Multiple sequence alignment - TraesCS7D01G192000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G192000 chr7D 100.000 2594 0 0 1 2594 147580859 147578266 0.000000e+00 4791.0
1 TraesCS7D01G192000 chr7D 96.568 437 8 3 1 435 77504215 77504646 0.000000e+00 717.0
2 TraesCS7D01G192000 chr7D 95.092 326 3 4 1 326 88001118 88000806 3.850000e-138 501.0
3 TraesCS7D01G192000 chr7D 96.507 229 6 2 1246 1473 634158820 634159047 6.780000e-101 377.0
4 TraesCS7D01G192000 chr7D 86.878 221 18 6 217 435 105879811 105880022 1.200000e-58 237.0
5 TraesCS7D01G192000 chr7D 88.889 81 5 3 82 160 184642088 184642166 2.120000e-16 97.1
6 TraesCS7D01G192000 chr7D 93.548 62 4 0 2261 2322 182813670 182813731 2.750000e-15 93.5
7 TraesCS7D01G192000 chr7D 83.117 77 9 3 1342 1415 608450297 608450222 1.670000e-07 67.6
8 TraesCS7D01G192000 chr7D 88.235 51 6 0 1370 1420 607546445 607546395 7.750000e-06 62.1
9 TraesCS7D01G192000 chr7A 91.186 2133 90 43 476 2561 148833217 148831136 0.000000e+00 2808.0
10 TraesCS7D01G192000 chr7B 90.850 2153 97 45 476 2594 110353797 110351711 0.000000e+00 2793.0
11 TraesCS7D01G192000 chr7B 90.588 85 6 2 77 160 502670439 502670522 7.590000e-21 111.0
12 TraesCS7D01G192000 chr7B 84.946 93 6 7 76 168 673668027 673668111 1.280000e-13 87.9
13 TraesCS7D01G192000 chr2B 94.975 398 13 6 1 393 4571439 4571044 3.670000e-173 617.0
14 TraesCS7D01G192000 chr2B 81.081 185 16 12 1 168 87472535 87472353 2.090000e-26 130.0
15 TraesCS7D01G192000 chr2B 77.679 224 36 10 196 407 480147781 480148002 9.750000e-25 124.0
16 TraesCS7D01G192000 chr2B 76.400 250 37 9 203 436 37543094 37543337 5.870000e-22 115.0
17 TraesCS7D01G192000 chr2D 87.912 273 22 4 2294 2561 140491208 140491474 6.970000e-81 311.0
18 TraesCS7D01G192000 chr6A 83.841 328 41 10 1217 1541 543931346 543931664 4.200000e-78 302.0
19 TraesCS7D01G192000 chr6A 83.729 295 22 6 158 435 571279334 571279619 3.310000e-64 255.0
20 TraesCS7D01G192000 chr6D 83.436 326 40 11 1217 1541 397629794 397630106 9.080000e-75 291.0
21 TraesCS7D01G192000 chr6D 80.894 246 38 5 196 438 364892273 364892034 4.410000e-43 185.0
22 TraesCS7D01G192000 chr6D 91.667 96 2 6 2297 2387 157316787 157316693 7.530000e-26 128.0
23 TraesCS7D01G192000 chr6D 92.157 51 4 0 1370 1420 102261455 102261505 3.580000e-09 73.1
24 TraesCS7D01G192000 chr6B 82.883 333 41 10 1217 1544 594439617 594439938 4.220000e-73 285.0
25 TraesCS7D01G192000 chr6B 81.944 144 19 3 294 435 651229680 651229818 5.870000e-22 115.0
26 TraesCS7D01G192000 chr5D 86.441 236 24 3 203 435 260461023 260461253 4.290000e-63 252.0
27 TraesCS7D01G192000 chr3A 83.051 295 23 8 158 435 425585038 425584754 2.580000e-60 243.0
28 TraesCS7D01G192000 chr3A 82.432 296 24 8 158 435 91449110 91448825 1.550000e-57 233.0
29 TraesCS7D01G192000 chr3A 86.667 180 12 9 1 168 628891892 628891713 3.410000e-44 189.0
30 TraesCS7D01G192000 chr3A 84.783 184 12 3 1 168 696183627 696183444 1.230000e-38 171.0
31 TraesCS7D01G192000 chr1A 77.104 297 25 20 158 435 268384743 268384471 5.820000e-27 132.0
32 TraesCS7D01G192000 chr1A 83.200 125 7 6 158 269 11200393 11200516 4.570000e-18 102.0
33 TraesCS7D01G192000 chr2A 83.871 124 16 4 286 407 757372631 757372510 5.870000e-22 115.0
34 TraesCS7D01G192000 chr5A 87.654 81 6 3 82 160 705301097 705301175 9.890000e-15 91.6
35 TraesCS7D01G192000 chr4A 86.585 82 8 3 82 160 680351842 680351923 1.280000e-13 87.9
36 TraesCS7D01G192000 chr4B 100.000 34 0 0 2275 2308 14508671 14508704 2.160000e-06 63.9
37 TraesCS7D01G192000 chr4B 100.000 34 0 0 2275 2308 14509542 14509575 2.160000e-06 63.9
38 TraesCS7D01G192000 chr4B 100.000 34 0 0 2275 2308 14512394 14512427 2.160000e-06 63.9
39 TraesCS7D01G192000 chr4B 100.000 34 0 0 2275 2308 14512622 14512655 2.160000e-06 63.9
40 TraesCS7D01G192000 chr4B 100.000 34 0 0 2275 2308 14513503 14513536 2.160000e-06 63.9
41 TraesCS7D01G192000 chr4B 100.000 34 0 0 2275 2308 14513731 14513764 2.160000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G192000 chr7D 147578266 147580859 2593 True 4791 4791 100.000 1 2594 1 chr7D.!!$R2 2593
1 TraesCS7D01G192000 chr7A 148831136 148833217 2081 True 2808 2808 91.186 476 2561 1 chr7A.!!$R1 2085
2 TraesCS7D01G192000 chr7B 110351711 110353797 2086 True 2793 2793 90.850 476 2594 1 chr7B.!!$R1 2118

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 122 0.032815 GCAGCTTACTCGAGGGGATC 59.967 60.0 18.41 1.69 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1950 1997 3.788227 AAGGTAGGAAGTGTCATGCAA 57.212 42.857 0.0 0.0 0.0 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.200283 GCGTCGCCAGAGGAGGAG 62.200 72.222 5.75 0.00 34.40 3.69
18 19 3.522731 CGTCGCCAGAGGAGGAGG 61.523 72.222 0.00 0.00 34.40 4.30
19 20 3.844090 GTCGCCAGAGGAGGAGGC 61.844 72.222 0.00 0.00 44.89 4.70
23 24 3.465403 CCAGAGGAGGAGGCACCG 61.465 72.222 0.00 0.00 44.74 4.94
24 25 3.465403 CAGAGGAGGAGGCACCGG 61.465 72.222 0.00 0.00 44.74 5.28
41 42 4.760047 GCGGTGGCGGTGTGAGAT 62.760 66.667 0.00 0.00 0.00 2.75
42 43 2.509336 CGGTGGCGGTGTGAGATC 60.509 66.667 0.00 0.00 0.00 2.75
43 44 2.982130 GGTGGCGGTGTGAGATCT 59.018 61.111 0.00 0.00 0.00 2.75
44 45 1.448540 GGTGGCGGTGTGAGATCTG 60.449 63.158 0.00 0.00 0.00 2.90
45 46 1.448540 GTGGCGGTGTGAGATCTGG 60.449 63.158 0.00 0.00 0.00 3.86
46 47 2.187946 GGCGGTGTGAGATCTGGG 59.812 66.667 0.00 0.00 0.00 4.45
47 48 2.187946 GCGGTGTGAGATCTGGGG 59.812 66.667 0.00 0.00 0.00 4.96
48 49 2.359169 GCGGTGTGAGATCTGGGGA 61.359 63.158 0.00 0.00 0.00 4.81
49 50 1.690219 GCGGTGTGAGATCTGGGGAT 61.690 60.000 0.00 0.00 34.45 3.85
50 51 0.390860 CGGTGTGAGATCTGGGGATC 59.609 60.000 0.00 0.00 46.33 3.36
57 58 2.664825 GATCTGGGGATCTCGAGGG 58.335 63.158 13.56 0.00 43.55 4.30
58 59 0.902516 GATCTGGGGATCTCGAGGGG 60.903 65.000 13.56 0.00 43.55 4.79
59 60 1.372245 ATCTGGGGATCTCGAGGGGA 61.372 60.000 13.56 0.00 0.00 4.81
60 61 1.157276 CTGGGGATCTCGAGGGGAT 59.843 63.158 13.56 0.00 0.00 3.85
61 62 1.152247 TGGGGATCTCGAGGGGATG 60.152 63.158 13.56 0.00 0.00 3.51
62 63 1.915769 GGGGATCTCGAGGGGATGG 60.916 68.421 13.56 0.00 0.00 3.51
63 64 2.588201 GGGATCTCGAGGGGATGGC 61.588 68.421 13.56 0.00 0.00 4.40
64 65 2.653702 GATCTCGAGGGGATGGCG 59.346 66.667 13.56 0.00 0.00 5.69
65 66 2.919856 ATCTCGAGGGGATGGCGG 60.920 66.667 13.56 0.00 0.00 6.13
75 76 4.299316 GATGGCGGCGCAACGATC 62.299 66.667 34.36 22.48 35.47 3.69
76 77 4.838152 ATGGCGGCGCAACGATCT 62.838 61.111 34.36 3.25 35.47 2.75
80 81 3.315521 CGGCGCAACGATCTCGAG 61.316 66.667 10.83 5.93 43.02 4.04
81 82 2.956964 GGCGCAACGATCTCGAGG 60.957 66.667 13.56 0.00 43.02 4.63
82 83 2.956964 GCGCAACGATCTCGAGGG 60.957 66.667 13.56 5.06 43.02 4.30
83 84 2.798689 CGCAACGATCTCGAGGGA 59.201 61.111 13.56 0.00 43.02 4.20
84 85 1.138883 CGCAACGATCTCGAGGGAA 59.861 57.895 13.56 0.00 43.02 3.97
85 86 0.249073 CGCAACGATCTCGAGGGAAT 60.249 55.000 13.56 0.00 43.02 3.01
86 87 1.492720 GCAACGATCTCGAGGGAATC 58.507 55.000 13.56 7.54 43.02 2.52
113 114 3.248171 GGCGACGCAGCTTACTCG 61.248 66.667 23.09 0.00 37.29 4.18
114 115 2.202440 GCGACGCAGCTTACTCGA 60.202 61.111 16.42 0.00 0.00 4.04
115 116 2.218239 GCGACGCAGCTTACTCGAG 61.218 63.158 16.42 11.84 0.00 4.04
116 117 1.583967 CGACGCAGCTTACTCGAGG 60.584 63.158 18.41 0.00 0.00 4.63
117 118 1.226717 GACGCAGCTTACTCGAGGG 60.227 63.158 18.41 7.63 0.00 4.30
118 119 2.105128 CGCAGCTTACTCGAGGGG 59.895 66.667 18.41 7.26 0.00 4.79
119 120 2.415608 CGCAGCTTACTCGAGGGGA 61.416 63.158 18.41 0.00 0.00 4.81
120 121 1.739338 CGCAGCTTACTCGAGGGGAT 61.739 60.000 18.41 1.79 0.00 3.85
121 122 0.032815 GCAGCTTACTCGAGGGGATC 59.967 60.000 18.41 1.69 0.00 3.36
157 158 3.288290 CGACGGGAGGGGATCGAG 61.288 72.222 0.00 0.00 36.70 4.04
158 159 2.195139 GACGGGAGGGGATCGAGA 59.805 66.667 0.00 0.00 0.00 4.04
159 160 1.899534 GACGGGAGGGGATCGAGAG 60.900 68.421 0.00 0.00 0.00 3.20
160 161 2.196229 CGGGAGGGGATCGAGAGT 59.804 66.667 0.00 0.00 0.00 3.24
161 162 2.196925 CGGGAGGGGATCGAGAGTG 61.197 68.421 0.00 0.00 0.00 3.51
162 163 1.834822 GGGAGGGGATCGAGAGTGG 60.835 68.421 0.00 0.00 0.00 4.00
163 164 1.230497 GGAGGGGATCGAGAGTGGA 59.770 63.158 0.00 0.00 0.00 4.02
164 165 0.825840 GGAGGGGATCGAGAGTGGAG 60.826 65.000 0.00 0.00 0.00 3.86
165 166 0.825840 GAGGGGATCGAGAGTGGAGG 60.826 65.000 0.00 0.00 0.00 4.30
166 167 1.834822 GGGGATCGAGAGTGGAGGG 60.835 68.421 0.00 0.00 0.00 4.30
167 168 2.503382 GGGATCGAGAGTGGAGGGC 61.503 68.421 0.00 0.00 0.00 5.19
168 169 1.758514 GGATCGAGAGTGGAGGGCA 60.759 63.158 0.00 0.00 0.00 5.36
169 170 1.739049 GATCGAGAGTGGAGGGCAG 59.261 63.158 0.00 0.00 0.00 4.85
170 171 1.743321 GATCGAGAGTGGAGGGCAGG 61.743 65.000 0.00 0.00 0.00 4.85
171 172 2.230189 ATCGAGAGTGGAGGGCAGGA 62.230 60.000 0.00 0.00 0.00 3.86
172 173 2.422231 CGAGAGTGGAGGGCAGGAG 61.422 68.421 0.00 0.00 0.00 3.69
173 174 1.000993 GAGAGTGGAGGGCAGGAGA 59.999 63.158 0.00 0.00 0.00 3.71
174 175 1.001503 AGAGTGGAGGGCAGGAGAG 59.998 63.158 0.00 0.00 0.00 3.20
175 176 1.305718 GAGTGGAGGGCAGGAGAGT 60.306 63.158 0.00 0.00 0.00 3.24
176 177 1.305718 AGTGGAGGGCAGGAGAGTC 60.306 63.158 0.00 0.00 0.00 3.36
177 178 2.363018 TGGAGGGCAGGAGAGTCG 60.363 66.667 0.00 0.00 0.00 4.18
178 179 2.363147 GGAGGGCAGGAGAGTCGT 60.363 66.667 0.00 0.00 0.00 4.34
179 180 2.716017 GGAGGGCAGGAGAGTCGTG 61.716 68.421 0.00 0.00 35.54 4.35
183 184 2.807045 GCAGGAGAGTCGTGCGTG 60.807 66.667 5.90 0.62 46.20 5.34
184 185 2.807045 CAGGAGAGTCGTGCGTGC 60.807 66.667 0.00 0.00 0.00 5.34
185 186 4.406173 AGGAGAGTCGTGCGTGCG 62.406 66.667 0.00 0.00 0.00 5.34
186 187 4.400109 GGAGAGTCGTGCGTGCGA 62.400 66.667 0.00 0.00 38.68 5.10
187 188 2.202492 GAGAGTCGTGCGTGCGAT 60.202 61.111 6.72 0.00 43.07 4.58
188 189 1.801913 GAGAGTCGTGCGTGCGATT 60.802 57.895 6.72 3.05 43.07 3.34
189 190 2.002963 GAGAGTCGTGCGTGCGATTG 62.003 60.000 6.72 0.00 43.07 2.67
190 191 3.071459 GAGTCGTGCGTGCGATTGG 62.071 63.158 6.72 0.00 43.07 3.16
191 192 3.411351 GTCGTGCGTGCGATTGGT 61.411 61.111 6.72 0.00 43.07 3.67
192 193 2.663520 TCGTGCGTGCGATTGGTT 60.664 55.556 0.00 0.00 35.83 3.67
193 194 2.248135 TCGTGCGTGCGATTGGTTT 61.248 52.632 0.00 0.00 35.83 3.27
194 195 0.944788 TCGTGCGTGCGATTGGTTTA 60.945 50.000 0.00 0.00 35.83 2.01
195 196 0.518355 CGTGCGTGCGATTGGTTTAG 60.518 55.000 0.00 0.00 0.00 1.85
196 197 0.179200 GTGCGTGCGATTGGTTTAGG 60.179 55.000 0.00 0.00 0.00 2.69
197 198 0.604243 TGCGTGCGATTGGTTTAGGT 60.604 50.000 0.00 0.00 0.00 3.08
198 199 0.519961 GCGTGCGATTGGTTTAGGTT 59.480 50.000 0.00 0.00 0.00 3.50
199 200 1.068816 GCGTGCGATTGGTTTAGGTTT 60.069 47.619 0.00 0.00 0.00 3.27
200 201 2.606065 GCGTGCGATTGGTTTAGGTTTT 60.606 45.455 0.00 0.00 0.00 2.43
201 202 3.634283 CGTGCGATTGGTTTAGGTTTTT 58.366 40.909 0.00 0.00 0.00 1.94
224 225 5.874892 TTTTCGCTGGTTAATTTTCGTTG 57.125 34.783 0.00 0.00 0.00 4.10
225 226 3.546002 TCGCTGGTTAATTTTCGTTGG 57.454 42.857 0.00 0.00 0.00 3.77
226 227 2.879646 TCGCTGGTTAATTTTCGTTGGT 59.120 40.909 0.00 0.00 0.00 3.67
227 228 3.315749 TCGCTGGTTAATTTTCGTTGGTT 59.684 39.130 0.00 0.00 0.00 3.67
228 229 4.514441 TCGCTGGTTAATTTTCGTTGGTTA 59.486 37.500 0.00 0.00 0.00 2.85
229 230 5.008415 TCGCTGGTTAATTTTCGTTGGTTAA 59.992 36.000 0.00 0.00 0.00 2.01
230 231 5.859648 CGCTGGTTAATTTTCGTTGGTTAAT 59.140 36.000 0.00 0.00 0.00 1.40
231 232 6.363896 CGCTGGTTAATTTTCGTTGGTTAATT 59.636 34.615 0.00 0.00 0.00 1.40
232 233 7.095982 CGCTGGTTAATTTTCGTTGGTTAATTT 60.096 33.333 0.00 0.00 0.00 1.82
233 234 8.552865 GCTGGTTAATTTTCGTTGGTTAATTTT 58.447 29.630 0.00 0.00 0.00 1.82
235 236 8.753175 TGGTTAATTTTCGTTGGTTAATTTTCG 58.247 29.630 0.00 0.00 0.00 3.46
236 237 8.215792 GGTTAATTTTCGTTGGTTAATTTTCGG 58.784 33.333 0.00 0.00 0.00 4.30
237 238 8.966194 GTTAATTTTCGTTGGTTAATTTTCGGA 58.034 29.630 0.00 0.00 0.00 4.55
238 239 7.631915 AATTTTCGTTGGTTAATTTTCGGAG 57.368 32.000 0.00 0.00 0.00 4.63
239 240 4.752661 TTCGTTGGTTAATTTTCGGAGG 57.247 40.909 0.00 0.00 0.00 4.30
240 241 3.742385 TCGTTGGTTAATTTTCGGAGGT 58.258 40.909 0.00 0.00 0.00 3.85
241 242 4.136051 TCGTTGGTTAATTTTCGGAGGTT 58.864 39.130 0.00 0.00 0.00 3.50
242 243 4.579753 TCGTTGGTTAATTTTCGGAGGTTT 59.420 37.500 0.00 0.00 0.00 3.27
243 244 5.067544 TCGTTGGTTAATTTTCGGAGGTTTT 59.932 36.000 0.00 0.00 0.00 2.43
244 245 5.749588 CGTTGGTTAATTTTCGGAGGTTTTT 59.250 36.000 0.00 0.00 0.00 1.94
264 265 2.691409 TTCCTTCGCTTGTAGATGGG 57.309 50.000 0.00 0.00 34.71 4.00
265 266 1.568504 TCCTTCGCTTGTAGATGGGT 58.431 50.000 0.00 0.00 34.71 4.51
266 267 1.207089 TCCTTCGCTTGTAGATGGGTG 59.793 52.381 0.00 0.00 34.71 4.61
267 268 1.009829 CTTCGCTTGTAGATGGGTGC 58.990 55.000 0.00 0.00 0.00 5.01
268 269 0.739462 TTCGCTTGTAGATGGGTGCG 60.739 55.000 0.00 0.00 43.95 5.34
269 270 1.153647 CGCTTGTAGATGGGTGCGA 60.154 57.895 0.00 0.00 45.15 5.10
270 271 1.421410 CGCTTGTAGATGGGTGCGAC 61.421 60.000 0.00 0.00 45.15 5.19
271 272 1.421410 GCTTGTAGATGGGTGCGACG 61.421 60.000 0.00 0.00 0.00 5.12
272 273 0.108804 CTTGTAGATGGGTGCGACGT 60.109 55.000 0.00 0.00 0.00 4.34
273 274 0.319083 TTGTAGATGGGTGCGACGTT 59.681 50.000 0.00 0.00 0.00 3.99
274 275 1.175654 TGTAGATGGGTGCGACGTTA 58.824 50.000 0.00 0.00 0.00 3.18
275 276 1.133598 TGTAGATGGGTGCGACGTTAG 59.866 52.381 0.00 0.00 0.00 2.34
276 277 0.742505 TAGATGGGTGCGACGTTAGG 59.257 55.000 0.00 0.00 0.00 2.69
277 278 1.217244 GATGGGTGCGACGTTAGGT 59.783 57.895 0.00 0.00 0.00 3.08
278 279 1.079405 ATGGGTGCGACGTTAGGTG 60.079 57.895 0.00 0.00 0.00 4.00
279 280 3.116531 GGGTGCGACGTTAGGTGC 61.117 66.667 0.00 0.00 0.00 5.01
280 281 3.475774 GGTGCGACGTTAGGTGCG 61.476 66.667 0.00 0.00 0.00 5.34
281 282 3.475774 GTGCGACGTTAGGTGCGG 61.476 66.667 0.00 0.00 0.00 5.69
285 286 4.078516 GACGTTAGGTGCGGCCCT 62.079 66.667 13.39 13.39 38.26 5.19
286 287 4.388499 ACGTTAGGTGCGGCCCTG 62.388 66.667 17.08 6.17 38.26 4.45
288 289 3.712907 GTTAGGTGCGGCCCTGGA 61.713 66.667 17.08 6.00 38.26 3.86
289 290 3.712907 TTAGGTGCGGCCCTGGAC 61.713 66.667 17.08 0.00 38.26 4.02
290 291 4.715130 TAGGTGCGGCCCTGGACT 62.715 66.667 17.08 0.00 38.26 3.85
296 297 4.704833 CGGCCCTGGACTGTGTGG 62.705 72.222 0.00 0.00 0.00 4.17
297 298 4.351054 GGCCCTGGACTGTGTGGG 62.351 72.222 0.00 0.00 42.41 4.61
298 299 4.351054 GCCCTGGACTGTGTGGGG 62.351 72.222 0.00 7.54 39.99 4.96
299 300 3.650950 CCCTGGACTGTGTGGGGG 61.651 72.222 0.00 0.00 36.15 5.40
300 301 4.351054 CCTGGACTGTGTGGGGGC 62.351 72.222 0.00 0.00 0.00 5.80
301 302 3.569210 CTGGACTGTGTGGGGGCA 61.569 66.667 0.00 0.00 0.00 5.36
302 303 2.858476 TGGACTGTGTGGGGGCAT 60.858 61.111 0.00 0.00 0.00 4.40
303 304 2.044946 GGACTGTGTGGGGGCATC 60.045 66.667 0.00 0.00 0.00 3.91
304 305 2.436646 GACTGTGTGGGGGCATCG 60.437 66.667 0.00 0.00 0.00 3.84
305 306 4.722700 ACTGTGTGGGGGCATCGC 62.723 66.667 0.00 0.00 0.00 4.58
315 316 3.419759 GGCATCGCGACGTGGTTT 61.420 61.111 12.93 0.00 0.00 3.27
316 317 2.554272 GCATCGCGACGTGGTTTT 59.446 55.556 12.93 0.00 0.00 2.43
317 318 1.082366 GCATCGCGACGTGGTTTTT 60.082 52.632 12.93 0.00 0.00 1.94
336 337 4.485024 TTTTTATTTGACGCGGCTAACA 57.515 36.364 15.80 0.00 0.00 2.41
337 338 3.733024 TTTATTTGACGCGGCTAACAG 57.267 42.857 15.80 0.00 0.00 3.16
338 339 2.373540 TATTTGACGCGGCTAACAGT 57.626 45.000 15.80 0.00 0.00 3.55
339 340 0.796312 ATTTGACGCGGCTAACAGTG 59.204 50.000 15.80 0.00 0.00 3.66
340 341 0.249531 TTTGACGCGGCTAACAGTGA 60.250 50.000 15.80 0.00 0.00 3.41
341 342 0.666274 TTGACGCGGCTAACAGTGAG 60.666 55.000 15.80 0.00 0.00 3.51
342 343 1.805945 GACGCGGCTAACAGTGAGG 60.806 63.158 12.47 0.00 0.00 3.86
343 344 2.261671 CGCGGCTAACAGTGAGGT 59.738 61.111 0.00 0.00 0.00 3.85
344 345 2.094659 CGCGGCTAACAGTGAGGTG 61.095 63.158 0.00 0.00 0.00 4.00
345 346 1.741770 GCGGCTAACAGTGAGGTGG 60.742 63.158 0.00 0.00 0.00 4.61
346 347 1.079127 CGGCTAACAGTGAGGTGGG 60.079 63.158 0.00 0.00 0.00 4.61
347 348 1.541310 CGGCTAACAGTGAGGTGGGA 61.541 60.000 0.00 0.00 0.00 4.37
348 349 0.250513 GGCTAACAGTGAGGTGGGAG 59.749 60.000 0.00 0.00 0.00 4.30
349 350 0.391793 GCTAACAGTGAGGTGGGAGC 60.392 60.000 0.00 0.00 0.00 4.70
350 351 0.976641 CTAACAGTGAGGTGGGAGCA 59.023 55.000 0.00 0.00 0.00 4.26
351 352 0.976641 TAACAGTGAGGTGGGAGCAG 59.023 55.000 0.00 0.00 0.00 4.24
352 353 1.772819 AACAGTGAGGTGGGAGCAGG 61.773 60.000 0.00 0.00 0.00 4.85
353 354 2.205462 AGTGAGGTGGGAGCAGGT 59.795 61.111 0.00 0.00 0.00 4.00
354 355 0.904865 CAGTGAGGTGGGAGCAGGTA 60.905 60.000 0.00 0.00 0.00 3.08
355 356 0.043334 AGTGAGGTGGGAGCAGGTAT 59.957 55.000 0.00 0.00 0.00 2.73
356 357 0.466124 GTGAGGTGGGAGCAGGTATC 59.534 60.000 0.00 0.00 0.00 2.24
357 358 0.042581 TGAGGTGGGAGCAGGTATCA 59.957 55.000 0.00 0.00 0.00 2.15
358 359 1.204146 GAGGTGGGAGCAGGTATCAA 58.796 55.000 0.00 0.00 0.00 2.57
359 360 1.559682 GAGGTGGGAGCAGGTATCAAA 59.440 52.381 0.00 0.00 0.00 2.69
360 361 1.992557 AGGTGGGAGCAGGTATCAAAA 59.007 47.619 0.00 0.00 0.00 2.44
361 362 2.378547 AGGTGGGAGCAGGTATCAAAAA 59.621 45.455 0.00 0.00 0.00 1.94
378 379 2.597578 AAAACCATGGTAGGTGGGAC 57.402 50.000 20.12 0.00 42.25 4.46
379 380 0.326927 AAACCATGGTAGGTGGGACG 59.673 55.000 20.12 0.00 42.25 4.79
380 381 0.545787 AACCATGGTAGGTGGGACGA 60.546 55.000 20.12 0.00 42.25 4.20
381 382 0.545787 ACCATGGTAGGTGGGACGAA 60.546 55.000 18.10 0.00 41.30 3.85
382 383 0.616371 CCATGGTAGGTGGGACGAAA 59.384 55.000 2.57 0.00 32.98 3.46
383 384 1.003812 CCATGGTAGGTGGGACGAAAA 59.996 52.381 2.57 0.00 32.98 2.29
384 385 2.356741 CCATGGTAGGTGGGACGAAAAT 60.357 50.000 2.57 0.00 32.98 1.82
385 386 3.118186 CCATGGTAGGTGGGACGAAAATA 60.118 47.826 2.57 0.00 32.98 1.40
386 387 4.519213 CATGGTAGGTGGGACGAAAATAA 58.481 43.478 0.00 0.00 0.00 1.40
387 388 4.637387 TGGTAGGTGGGACGAAAATAAA 57.363 40.909 0.00 0.00 0.00 1.40
388 389 5.182169 TGGTAGGTGGGACGAAAATAAAT 57.818 39.130 0.00 0.00 0.00 1.40
389 390 5.187687 TGGTAGGTGGGACGAAAATAAATC 58.812 41.667 0.00 0.00 0.00 2.17
390 391 4.577693 GGTAGGTGGGACGAAAATAAATCC 59.422 45.833 0.00 0.00 0.00 3.01
391 392 3.275999 AGGTGGGACGAAAATAAATCCG 58.724 45.455 0.00 0.00 31.48 4.18
392 393 2.356695 GGTGGGACGAAAATAAATCCGG 59.643 50.000 0.00 0.00 31.48 5.14
393 394 3.272581 GTGGGACGAAAATAAATCCGGA 58.727 45.455 6.61 6.61 31.48 5.14
394 395 3.690628 GTGGGACGAAAATAAATCCGGAA 59.309 43.478 9.01 0.00 31.48 4.30
395 396 3.690628 TGGGACGAAAATAAATCCGGAAC 59.309 43.478 9.01 0.00 31.48 3.62
411 412 2.381911 GGAACGGAGACTACCATACCA 58.618 52.381 0.00 0.00 0.00 3.25
412 413 2.762327 GGAACGGAGACTACCATACCAA 59.238 50.000 0.00 0.00 0.00 3.67
413 414 3.429960 GGAACGGAGACTACCATACCAAC 60.430 52.174 0.00 0.00 0.00 3.77
414 415 3.097342 ACGGAGACTACCATACCAACT 57.903 47.619 0.00 0.00 0.00 3.16
415 416 4.240881 ACGGAGACTACCATACCAACTA 57.759 45.455 0.00 0.00 0.00 2.24
416 417 4.603131 ACGGAGACTACCATACCAACTAA 58.397 43.478 0.00 0.00 0.00 2.24
417 418 4.643784 ACGGAGACTACCATACCAACTAAG 59.356 45.833 0.00 0.00 0.00 2.18
418 419 4.885907 CGGAGACTACCATACCAACTAAGA 59.114 45.833 0.00 0.00 0.00 2.10
419 420 5.221009 CGGAGACTACCATACCAACTAAGAC 60.221 48.000 0.00 0.00 0.00 3.01
420 421 5.221009 GGAGACTACCATACCAACTAAGACG 60.221 48.000 0.00 0.00 0.00 4.18
421 422 5.259632 AGACTACCATACCAACTAAGACGT 58.740 41.667 0.00 0.00 0.00 4.34
422 423 5.713861 AGACTACCATACCAACTAAGACGTT 59.286 40.000 0.00 0.00 0.00 3.99
423 424 6.886459 AGACTACCATACCAACTAAGACGTTA 59.114 38.462 0.00 0.00 0.00 3.18
424 425 7.066766 AGACTACCATACCAACTAAGACGTTAG 59.933 40.741 0.00 0.00 41.45 2.34
425 426 6.886459 ACTACCATACCAACTAAGACGTTAGA 59.114 38.462 1.31 0.00 38.39 2.10
426 427 6.594788 ACCATACCAACTAAGACGTTAGAA 57.405 37.500 1.31 0.00 38.39 2.10
427 428 6.628185 ACCATACCAACTAAGACGTTAGAAG 58.372 40.000 1.31 0.00 38.39 2.85
428 429 6.210185 ACCATACCAACTAAGACGTTAGAAGT 59.790 38.462 1.31 0.00 38.39 3.01
429 430 7.394359 ACCATACCAACTAAGACGTTAGAAGTA 59.606 37.037 1.31 1.33 38.39 2.24
430 431 7.914346 CCATACCAACTAAGACGTTAGAAGTAG 59.086 40.741 1.31 0.00 38.39 2.57
431 432 8.671921 CATACCAACTAAGACGTTAGAAGTAGA 58.328 37.037 1.31 0.00 38.39 2.59
432 433 7.143514 ACCAACTAAGACGTTAGAAGTAGAG 57.856 40.000 1.31 0.00 38.39 2.43
433 434 6.939163 ACCAACTAAGACGTTAGAAGTAGAGA 59.061 38.462 1.31 0.00 38.39 3.10
434 435 7.611079 ACCAACTAAGACGTTAGAAGTAGAGAT 59.389 37.037 1.31 0.00 38.39 2.75
435 436 8.460428 CCAACTAAGACGTTAGAAGTAGAGATT 58.540 37.037 1.31 0.00 38.39 2.40
436 437 9.279904 CAACTAAGACGTTAGAAGTAGAGATTG 57.720 37.037 1.31 0.00 38.39 2.67
437 438 8.789825 ACTAAGACGTTAGAAGTAGAGATTGA 57.210 34.615 1.31 0.00 38.39 2.57
438 439 9.228949 ACTAAGACGTTAGAAGTAGAGATTGAA 57.771 33.333 1.31 0.00 38.39 2.69
479 480 1.387781 TCTGCATGGGATGGGGGAT 60.388 57.895 0.00 0.00 0.00 3.85
566 568 3.699038 GCTCTGTATCCTCACTGTTCTCT 59.301 47.826 0.00 0.00 0.00 3.10
604 608 0.472925 TCTGGCCACTGACAACCCTA 60.473 55.000 0.00 0.00 0.00 3.53
608 612 1.295423 CCACTGACAACCCTACCCG 59.705 63.158 0.00 0.00 0.00 5.28
722 728 3.941188 ACTGACACCTGTGCCCCG 61.941 66.667 0.00 0.00 0.00 5.73
739 745 4.589675 GAAACCACGGGCCCCACA 62.590 66.667 18.66 0.00 0.00 4.17
744 750 4.394712 CACGGGCCCCACAGACTC 62.395 72.222 18.66 0.00 0.00 3.36
749 755 3.775654 GCCCCACAGACTCCCGAG 61.776 72.222 0.00 0.00 0.00 4.63
750 756 2.037367 CCCCACAGACTCCCGAGA 59.963 66.667 0.00 0.00 0.00 4.04
751 757 2.055042 CCCCACAGACTCCCGAGAG 61.055 68.421 0.00 0.00 46.36 3.20
752 758 1.000771 CCCACAGACTCCCGAGAGA 60.001 63.158 0.00 0.00 43.39 3.10
753 759 1.034838 CCCACAGACTCCCGAGAGAG 61.035 65.000 0.00 0.00 43.39 3.20
754 760 0.034960 CCACAGACTCCCGAGAGAGA 60.035 60.000 0.00 0.00 43.39 3.10
755 761 1.614583 CCACAGACTCCCGAGAGAGAA 60.615 57.143 0.00 0.00 43.39 2.87
756 762 2.163509 CACAGACTCCCGAGAGAGAAA 58.836 52.381 0.00 0.00 43.39 2.52
757 763 2.163412 CACAGACTCCCGAGAGAGAAAG 59.837 54.545 0.00 0.00 43.39 2.62
758 764 1.134175 CAGACTCCCGAGAGAGAAAGC 59.866 57.143 0.00 0.00 43.39 3.51
759 765 0.458260 GACTCCCGAGAGAGAAAGCC 59.542 60.000 0.00 0.00 43.39 4.35
760 766 0.973496 ACTCCCGAGAGAGAAAGCCC 60.973 60.000 0.00 0.00 43.39 5.19
804 810 3.379445 GGTCACGAGGCGAAGGGA 61.379 66.667 0.00 0.00 0.00 4.20
809 815 1.762460 ACGAGGCGAAGGGATGGAT 60.762 57.895 0.00 0.00 0.00 3.41
1623 1656 2.747446 GCCAACCGATTCTTTTCTGCTA 59.253 45.455 0.00 0.00 0.00 3.49
1710 1743 1.224592 GGTGTCCATAGGCTGGTGG 59.775 63.158 12.95 12.95 46.08 4.61
1796 1835 6.699575 ACAGCAGTAGAACTCAATTTTGTT 57.300 33.333 0.00 0.00 0.00 2.83
1868 1908 5.250774 TGATCATCATCTCCCATCATCATGT 59.749 40.000 0.00 0.00 0.00 3.21
1937 1983 9.586150 CTGCAGTCGATGATATTACAAATTAAC 57.414 33.333 5.25 0.00 0.00 2.01
1938 1984 8.272866 TGCAGTCGATGATATTACAAATTAACG 58.727 33.333 0.00 0.00 0.00 3.18
1940 1986 9.567917 CAGTCGATGATATTACAAATTAACGTG 57.432 33.333 0.00 0.00 0.00 4.49
1941 1987 8.761497 AGTCGATGATATTACAAATTAACGTGG 58.239 33.333 0.00 0.00 0.00 4.94
1943 1989 9.747293 TCGATGATATTACAAATTAACGTGGTA 57.253 29.630 0.00 0.00 0.00 3.25
2060 2110 9.988815 CACTAATATAGATAGTCCAGCAACTTT 57.011 33.333 0.00 0.00 31.33 2.66
2079 2129 3.775654 GGTGGCGCCTCTGCTAGT 61.776 66.667 29.70 0.00 34.43 2.57
2128 2189 7.559590 AGCAAGAAATGGCAAGTACTAATAG 57.440 36.000 0.00 0.00 0.00 1.73
2159 2220 5.515270 GCAACTTAATTAAGACCGCAAATCC 59.485 40.000 27.92 4.37 37.08 3.01
2165 2226 2.435938 GACCGCAAATCCGCCAGA 60.436 61.111 0.00 0.00 0.00 3.86
2197 2258 1.830836 GGAAGATTCGGGGGAGGTC 59.169 63.158 0.00 0.00 0.00 3.85
2198 2259 0.981277 GGAAGATTCGGGGGAGGTCA 60.981 60.000 0.00 0.00 0.00 4.02
2200 2261 0.252742 AAGATTCGGGGGAGGTCACT 60.253 55.000 0.00 0.00 0.00 3.41
2269 2330 5.634439 CCGTGAGATGATGAGATCAGATTTC 59.366 44.000 0.00 0.00 43.53 2.17
2270 2331 5.342791 CGTGAGATGATGAGATCAGATTTCG 59.657 44.000 0.00 0.00 43.53 3.46
2351 2412 7.137426 GCACCTCATCATCAAGAATCAAATAC 58.863 38.462 0.00 0.00 0.00 1.89
2352 2413 7.350467 CACCTCATCATCAAGAATCAAATACG 58.650 38.462 0.00 0.00 0.00 3.06
2353 2414 7.225341 CACCTCATCATCAAGAATCAAATACGA 59.775 37.037 0.00 0.00 0.00 3.43
2354 2415 7.440556 ACCTCATCATCAAGAATCAAATACGAG 59.559 37.037 0.00 0.00 0.00 4.18
2355 2416 7.440556 CCTCATCATCAAGAATCAAATACGAGT 59.559 37.037 0.00 0.00 0.00 4.18
2356 2417 9.468532 CTCATCATCAAGAATCAAATACGAGTA 57.531 33.333 0.00 0.00 0.00 2.59
2368 2433 2.071844 TACGAGTATGCCGCTGCTCC 62.072 60.000 0.70 0.00 38.71 4.70
2407 2478 2.284625 ATGCTGGGTCTGGACGGA 60.285 61.111 0.00 0.00 0.00 4.69
2423 2494 2.637383 GGAGACCTCCGCTTGTCGT 61.637 63.158 0.00 0.00 40.36 4.34
2434 2505 1.917273 GCTTGTCGTACTGGCGATTA 58.083 50.000 0.00 0.00 43.07 1.75
2525 2596 2.290260 TGGGTTTACTCCTCGTCGTAGA 60.290 50.000 0.00 0.00 0.00 2.59
2533 2604 3.695060 ACTCCTCGTCGTAGATCAACAAT 59.305 43.478 0.00 0.00 40.67 2.71
2539 2610 4.619760 TCGTCGTAGATCAACAATTGACAC 59.380 41.667 13.59 0.00 43.48 3.67
2543 2614 5.408299 TCGTAGATCAACAATTGACACAAGG 59.592 40.000 13.59 0.00 43.48 3.61
2544 2615 5.390885 CGTAGATCAACAATTGACACAAGGG 60.391 44.000 13.59 0.00 43.48 3.95
2553 2624 0.394488 TGACACAAGGGTTCGCCAAA 60.394 50.000 0.00 0.00 39.65 3.28
2554 2625 0.741915 GACACAAGGGTTCGCCAAAA 59.258 50.000 0.00 0.00 39.65 2.44
2555 2626 1.135333 GACACAAGGGTTCGCCAAAAA 59.865 47.619 0.00 0.00 39.65 1.94
2556 2627 1.136110 ACACAAGGGTTCGCCAAAAAG 59.864 47.619 0.00 0.00 39.65 2.27
2560 2631 3.055747 ACAAGGGTTCGCCAAAAAGAAAA 60.056 39.130 0.00 0.00 39.65 2.29
2561 2632 3.452755 AGGGTTCGCCAAAAAGAAAAG 57.547 42.857 0.00 0.00 39.65 2.27
2567 2638 6.183360 GGGTTCGCCAAAAAGAAAAGAAAAAT 60.183 34.615 0.00 0.00 39.65 1.82
2568 2639 6.686679 GGTTCGCCAAAAAGAAAAGAAAAATG 59.313 34.615 0.00 0.00 37.19 2.32
2578 2649 7.486802 AAGAAAAGAAAAATGGCAGTTGATG 57.513 32.000 0.00 0.00 0.00 3.07
2582 2653 6.403866 AAGAAAAATGGCAGTTGATGTACA 57.596 33.333 0.00 0.00 0.00 2.90
2585 2656 7.444299 AGAAAAATGGCAGTTGATGTACAATT 58.556 30.769 0.00 0.00 40.76 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.200283 CTCCTCCTCTGGCGACGC 62.200 72.222 12.43 12.43 0.00 5.19
1 2 3.522731 CCTCCTCCTCTGGCGACG 61.523 72.222 0.00 0.00 0.00 5.12
2 3 3.844090 GCCTCCTCCTCTGGCGAC 61.844 72.222 0.00 0.00 37.11 5.19
5 6 3.791586 GGTGCCTCCTCCTCTGGC 61.792 72.222 0.00 0.00 46.26 4.85
6 7 3.465403 CGGTGCCTCCTCCTCTGG 61.465 72.222 0.00 0.00 0.00 3.86
7 8 3.465403 CCGGTGCCTCCTCCTCTG 61.465 72.222 0.00 0.00 0.00 3.35
24 25 4.760047 ATCTCACACCGCCACCGC 62.760 66.667 0.00 0.00 0.00 5.68
25 26 2.509336 GATCTCACACCGCCACCG 60.509 66.667 0.00 0.00 0.00 4.94
26 27 1.448540 CAGATCTCACACCGCCACC 60.449 63.158 0.00 0.00 0.00 4.61
27 28 1.448540 CCAGATCTCACACCGCCAC 60.449 63.158 0.00 0.00 0.00 5.01
28 29 2.659063 CCCAGATCTCACACCGCCA 61.659 63.158 0.00 0.00 0.00 5.69
29 30 2.187946 CCCAGATCTCACACCGCC 59.812 66.667 0.00 0.00 0.00 6.13
30 31 1.690219 ATCCCCAGATCTCACACCGC 61.690 60.000 0.00 0.00 0.00 5.68
31 32 0.390860 GATCCCCAGATCTCACACCG 59.609 60.000 0.00 0.00 44.78 4.94
40 41 1.157276 CCCCTCGAGATCCCCAGAT 59.843 63.158 15.71 0.00 34.57 2.90
41 42 1.372245 ATCCCCTCGAGATCCCCAGA 61.372 60.000 15.71 0.00 0.00 3.86
42 43 1.157276 ATCCCCTCGAGATCCCCAG 59.843 63.158 15.71 0.00 0.00 4.45
43 44 1.152247 CATCCCCTCGAGATCCCCA 60.152 63.158 15.71 0.00 0.00 4.96
44 45 1.915769 CCATCCCCTCGAGATCCCC 60.916 68.421 15.71 0.00 0.00 4.81
45 46 2.588201 GCCATCCCCTCGAGATCCC 61.588 68.421 15.71 0.00 0.00 3.85
46 47 2.936912 CGCCATCCCCTCGAGATCC 61.937 68.421 15.71 0.00 0.00 3.36
47 48 2.653702 CGCCATCCCCTCGAGATC 59.346 66.667 15.71 0.00 0.00 2.75
48 49 2.919856 CCGCCATCCCCTCGAGAT 60.920 66.667 15.71 0.00 0.00 2.75
58 59 4.299316 GATCGTTGCGCCGCCATC 62.299 66.667 6.63 0.00 0.00 3.51
59 60 4.838152 AGATCGTTGCGCCGCCAT 62.838 61.111 6.63 0.00 0.00 4.40
63 64 3.315521 CTCGAGATCGTTGCGCCG 61.316 66.667 6.58 1.29 40.80 6.46
64 65 2.956964 CCTCGAGATCGTTGCGCC 60.957 66.667 15.71 0.00 40.80 6.53
65 66 2.884087 TTCCCTCGAGATCGTTGCGC 62.884 60.000 15.71 0.00 40.80 6.09
66 67 0.249073 ATTCCCTCGAGATCGTTGCG 60.249 55.000 15.71 0.00 40.80 4.85
67 68 1.492720 GATTCCCTCGAGATCGTTGC 58.507 55.000 15.71 0.00 40.80 4.17
93 94 3.542742 GTAAGCTGCGTCGCCGTC 61.543 66.667 15.88 4.93 36.15 4.79
94 95 3.966026 GAGTAAGCTGCGTCGCCGT 62.966 63.158 15.88 0.70 36.15 5.68
95 96 3.248171 GAGTAAGCTGCGTCGCCG 61.248 66.667 15.88 9.86 37.07 6.46
96 97 3.248171 CGAGTAAGCTGCGTCGCC 61.248 66.667 15.88 0.00 0.00 5.54
97 98 2.202440 TCGAGTAAGCTGCGTCGC 60.202 61.111 11.10 11.10 32.41 5.19
98 99 1.583967 CCTCGAGTAAGCTGCGTCG 60.584 63.158 12.31 9.45 0.00 5.12
99 100 1.226717 CCCTCGAGTAAGCTGCGTC 60.227 63.158 12.31 0.00 0.00 5.19
100 101 2.711922 CCCCTCGAGTAAGCTGCGT 61.712 63.158 12.31 0.00 0.00 5.24
101 102 1.739338 ATCCCCTCGAGTAAGCTGCG 61.739 60.000 12.31 0.00 0.00 5.18
102 103 0.032815 GATCCCCTCGAGTAAGCTGC 59.967 60.000 12.31 0.00 0.00 5.25
113 114 2.203365 TCGGCTCTCGATCCCCTC 60.203 66.667 0.00 0.00 43.74 4.30
140 141 3.288290 CTCGATCCCCTCCCGTCG 61.288 72.222 0.00 0.00 35.55 5.12
141 142 1.899534 CTCTCGATCCCCTCCCGTC 60.900 68.421 0.00 0.00 0.00 4.79
142 143 2.196229 CTCTCGATCCCCTCCCGT 59.804 66.667 0.00 0.00 0.00 5.28
143 144 2.196229 ACTCTCGATCCCCTCCCG 59.804 66.667 0.00 0.00 0.00 5.14
144 145 1.834822 CCACTCTCGATCCCCTCCC 60.835 68.421 0.00 0.00 0.00 4.30
145 146 0.825840 CTCCACTCTCGATCCCCTCC 60.826 65.000 0.00 0.00 0.00 4.30
146 147 0.825840 CCTCCACTCTCGATCCCCTC 60.826 65.000 0.00 0.00 0.00 4.30
147 148 1.231641 CCTCCACTCTCGATCCCCT 59.768 63.158 0.00 0.00 0.00 4.79
148 149 1.834822 CCCTCCACTCTCGATCCCC 60.835 68.421 0.00 0.00 0.00 4.81
149 150 2.503382 GCCCTCCACTCTCGATCCC 61.503 68.421 0.00 0.00 0.00 3.85
150 151 1.743321 CTGCCCTCCACTCTCGATCC 61.743 65.000 0.00 0.00 0.00 3.36
151 152 1.739049 CTGCCCTCCACTCTCGATC 59.261 63.158 0.00 0.00 0.00 3.69
152 153 1.760086 CCTGCCCTCCACTCTCGAT 60.760 63.158 0.00 0.00 0.00 3.59
153 154 2.363018 CCTGCCCTCCACTCTCGA 60.363 66.667 0.00 0.00 0.00 4.04
154 155 2.363018 TCCTGCCCTCCACTCTCG 60.363 66.667 0.00 0.00 0.00 4.04
155 156 1.000993 TCTCCTGCCCTCCACTCTC 59.999 63.158 0.00 0.00 0.00 3.20
156 157 1.001503 CTCTCCTGCCCTCCACTCT 59.998 63.158 0.00 0.00 0.00 3.24
157 158 1.305718 ACTCTCCTGCCCTCCACTC 60.306 63.158 0.00 0.00 0.00 3.51
158 159 1.305718 GACTCTCCTGCCCTCCACT 60.306 63.158 0.00 0.00 0.00 4.00
159 160 2.716017 CGACTCTCCTGCCCTCCAC 61.716 68.421 0.00 0.00 0.00 4.02
160 161 2.363018 CGACTCTCCTGCCCTCCA 60.363 66.667 0.00 0.00 0.00 3.86
161 162 2.363147 ACGACTCTCCTGCCCTCC 60.363 66.667 0.00 0.00 0.00 4.30
162 163 2.888863 CACGACTCTCCTGCCCTC 59.111 66.667 0.00 0.00 0.00 4.30
163 164 3.386237 GCACGACTCTCCTGCCCT 61.386 66.667 0.00 0.00 0.00 5.19
164 165 4.803426 CGCACGACTCTCCTGCCC 62.803 72.222 0.00 0.00 0.00 5.36
165 166 4.057428 ACGCACGACTCTCCTGCC 62.057 66.667 0.00 0.00 0.00 4.85
166 167 2.807045 CACGCACGACTCTCCTGC 60.807 66.667 0.00 0.00 0.00 4.85
167 168 2.807045 GCACGCACGACTCTCCTG 60.807 66.667 0.00 0.00 0.00 3.86
168 169 4.406173 CGCACGCACGACTCTCCT 62.406 66.667 0.00 0.00 34.06 3.69
169 170 3.685214 ATCGCACGCACGACTCTCC 62.685 63.158 2.18 0.00 46.28 3.71
170 171 1.801913 AATCGCACGCACGACTCTC 60.802 57.895 2.18 0.00 46.28 3.20
171 172 2.088763 CAATCGCACGCACGACTCT 61.089 57.895 2.18 0.00 46.28 3.24
172 173 2.391821 CAATCGCACGCACGACTC 59.608 61.111 2.18 0.00 46.28 3.36
173 174 3.112075 CCAATCGCACGCACGACT 61.112 61.111 2.18 0.00 46.28 4.18
174 175 2.438385 AAACCAATCGCACGCACGAC 62.438 55.000 2.18 0.00 46.28 4.34
176 177 0.518355 CTAAACCAATCGCACGCACG 60.518 55.000 0.00 0.00 0.00 5.34
177 178 0.179200 CCTAAACCAATCGCACGCAC 60.179 55.000 0.00 0.00 0.00 5.34
178 179 0.604243 ACCTAAACCAATCGCACGCA 60.604 50.000 0.00 0.00 0.00 5.24
179 180 0.519961 AACCTAAACCAATCGCACGC 59.480 50.000 0.00 0.00 0.00 5.34
180 181 2.981400 AAACCTAAACCAATCGCACG 57.019 45.000 0.00 0.00 0.00 5.34
201 202 5.232414 CCAACGAAAATTAACCAGCGAAAAA 59.768 36.000 0.00 0.00 0.00 1.94
202 203 4.740695 CCAACGAAAATTAACCAGCGAAAA 59.259 37.500 0.00 0.00 0.00 2.29
203 204 4.202030 ACCAACGAAAATTAACCAGCGAAA 60.202 37.500 0.00 0.00 0.00 3.46
204 205 3.315749 ACCAACGAAAATTAACCAGCGAA 59.684 39.130 0.00 0.00 0.00 4.70
205 206 2.879646 ACCAACGAAAATTAACCAGCGA 59.120 40.909 0.00 0.00 0.00 4.93
206 207 3.276882 ACCAACGAAAATTAACCAGCG 57.723 42.857 0.00 0.00 0.00 5.18
207 208 7.646446 AATTAACCAACGAAAATTAACCAGC 57.354 32.000 0.00 0.00 0.00 4.85
209 210 8.753175 CGAAAATTAACCAACGAAAATTAACCA 58.247 29.630 0.00 0.00 0.00 3.67
210 211 8.215792 CCGAAAATTAACCAACGAAAATTAACC 58.784 33.333 0.00 0.00 0.00 2.85
211 212 8.966194 TCCGAAAATTAACCAACGAAAATTAAC 58.034 29.630 0.00 0.00 0.00 2.01
212 213 9.182933 CTCCGAAAATTAACCAACGAAAATTAA 57.817 29.630 0.00 0.00 0.00 1.40
213 214 7.808856 CCTCCGAAAATTAACCAACGAAAATTA 59.191 33.333 0.00 0.00 0.00 1.40
214 215 6.643360 CCTCCGAAAATTAACCAACGAAAATT 59.357 34.615 0.00 0.00 0.00 1.82
215 216 6.153756 CCTCCGAAAATTAACCAACGAAAAT 58.846 36.000 0.00 0.00 0.00 1.82
216 217 5.067544 ACCTCCGAAAATTAACCAACGAAAA 59.932 36.000 0.00 0.00 0.00 2.29
217 218 4.579753 ACCTCCGAAAATTAACCAACGAAA 59.420 37.500 0.00 0.00 0.00 3.46
218 219 4.136051 ACCTCCGAAAATTAACCAACGAA 58.864 39.130 0.00 0.00 0.00 3.85
219 220 3.742385 ACCTCCGAAAATTAACCAACGA 58.258 40.909 0.00 0.00 0.00 3.85
220 221 4.492791 AACCTCCGAAAATTAACCAACG 57.507 40.909 0.00 0.00 0.00 4.10
242 243 3.756434 CCCATCTACAAGCGAAGGAAAAA 59.244 43.478 0.00 0.00 0.00 1.94
243 244 3.244770 ACCCATCTACAAGCGAAGGAAAA 60.245 43.478 0.00 0.00 0.00 2.29
244 245 2.304761 ACCCATCTACAAGCGAAGGAAA 59.695 45.455 0.00 0.00 0.00 3.13
245 246 1.906574 ACCCATCTACAAGCGAAGGAA 59.093 47.619 0.00 0.00 0.00 3.36
246 247 1.207089 CACCCATCTACAAGCGAAGGA 59.793 52.381 0.00 0.00 0.00 3.36
247 248 1.656652 CACCCATCTACAAGCGAAGG 58.343 55.000 0.00 0.00 0.00 3.46
248 249 1.009829 GCACCCATCTACAAGCGAAG 58.990 55.000 0.00 0.00 0.00 3.79
249 250 3.153024 GCACCCATCTACAAGCGAA 57.847 52.632 0.00 0.00 0.00 4.70
250 251 4.932789 GCACCCATCTACAAGCGA 57.067 55.556 0.00 0.00 0.00 4.93
251 252 1.153647 TCGCACCCATCTACAAGCG 60.154 57.895 0.00 0.00 45.79 4.68
252 253 1.421410 CGTCGCACCCATCTACAAGC 61.421 60.000 0.00 0.00 0.00 4.01
253 254 0.108804 ACGTCGCACCCATCTACAAG 60.109 55.000 0.00 0.00 0.00 3.16
254 255 0.319083 AACGTCGCACCCATCTACAA 59.681 50.000 0.00 0.00 0.00 2.41
255 256 1.133598 CTAACGTCGCACCCATCTACA 59.866 52.381 0.00 0.00 0.00 2.74
256 257 1.535437 CCTAACGTCGCACCCATCTAC 60.535 57.143 0.00 0.00 0.00 2.59
257 258 0.742505 CCTAACGTCGCACCCATCTA 59.257 55.000 0.00 0.00 0.00 1.98
258 259 1.255667 ACCTAACGTCGCACCCATCT 61.256 55.000 0.00 0.00 0.00 2.90
259 260 1.082117 CACCTAACGTCGCACCCATC 61.082 60.000 0.00 0.00 0.00 3.51
260 261 1.079405 CACCTAACGTCGCACCCAT 60.079 57.895 0.00 0.00 0.00 4.00
261 262 2.340809 CACCTAACGTCGCACCCA 59.659 61.111 0.00 0.00 0.00 4.51
262 263 3.116531 GCACCTAACGTCGCACCC 61.117 66.667 0.00 0.00 0.00 4.61
263 264 3.475774 CGCACCTAACGTCGCACC 61.476 66.667 0.00 0.00 0.00 5.01
264 265 3.475774 CCGCACCTAACGTCGCAC 61.476 66.667 0.00 0.00 0.00 5.34
268 269 4.078516 AGGGCCGCACCTAACGTC 62.079 66.667 0.00 0.00 39.65 4.34
269 270 4.388499 CAGGGCCGCACCTAACGT 62.388 66.667 0.00 0.00 39.34 3.99
271 272 3.712907 TCCAGGGCCGCACCTAAC 61.713 66.667 0.00 0.00 39.34 2.34
272 273 3.712907 GTCCAGGGCCGCACCTAA 61.713 66.667 0.00 0.00 39.34 2.69
273 274 4.715130 AGTCCAGGGCCGCACCTA 62.715 66.667 0.00 0.00 39.34 3.08
279 280 4.704833 CCACACAGTCCAGGGCCG 62.705 72.222 0.00 0.00 0.00 6.13
280 281 4.351054 CCCACACAGTCCAGGGCC 62.351 72.222 0.00 0.00 33.91 5.80
281 282 4.351054 CCCCACACAGTCCAGGGC 62.351 72.222 0.00 0.00 40.07 5.19
282 283 3.650950 CCCCCACACAGTCCAGGG 61.651 72.222 0.00 0.00 41.12 4.45
283 284 4.351054 GCCCCCACACAGTCCAGG 62.351 72.222 0.00 0.00 0.00 4.45
284 285 2.826777 GATGCCCCCACACAGTCCAG 62.827 65.000 0.00 0.00 0.00 3.86
285 286 2.858476 ATGCCCCCACACAGTCCA 60.858 61.111 0.00 0.00 0.00 4.02
286 287 2.044946 GATGCCCCCACACAGTCC 60.045 66.667 0.00 0.00 0.00 3.85
287 288 2.436646 CGATGCCCCCACACAGTC 60.437 66.667 0.00 0.00 0.00 3.51
288 289 4.722700 GCGATGCCCCCACACAGT 62.723 66.667 0.00 0.00 0.00 3.55
298 299 2.452366 AAAAACCACGTCGCGATGCC 62.452 55.000 27.52 6.69 0.00 4.40
299 300 1.082366 AAAAACCACGTCGCGATGC 60.082 52.632 27.52 7.50 0.00 3.91
315 316 4.023878 ACTGTTAGCCGCGTCAAATAAAAA 60.024 37.500 4.92 0.00 0.00 1.94
316 317 3.499157 ACTGTTAGCCGCGTCAAATAAAA 59.501 39.130 4.92 0.00 0.00 1.52
317 318 3.068560 ACTGTTAGCCGCGTCAAATAAA 58.931 40.909 4.92 0.00 0.00 1.40
318 319 2.413796 CACTGTTAGCCGCGTCAAATAA 59.586 45.455 4.92 0.00 0.00 1.40
319 320 1.996898 CACTGTTAGCCGCGTCAAATA 59.003 47.619 4.92 0.00 0.00 1.40
320 321 0.796312 CACTGTTAGCCGCGTCAAAT 59.204 50.000 4.92 0.00 0.00 2.32
321 322 0.249531 TCACTGTTAGCCGCGTCAAA 60.250 50.000 4.92 0.00 0.00 2.69
322 323 0.666274 CTCACTGTTAGCCGCGTCAA 60.666 55.000 4.92 0.00 0.00 3.18
323 324 1.080772 CTCACTGTTAGCCGCGTCA 60.081 57.895 4.92 0.00 0.00 4.35
324 325 1.805945 CCTCACTGTTAGCCGCGTC 60.806 63.158 4.92 0.00 0.00 5.19
325 326 2.261671 CCTCACTGTTAGCCGCGT 59.738 61.111 4.92 0.00 0.00 6.01
326 327 2.094659 CACCTCACTGTTAGCCGCG 61.095 63.158 0.00 0.00 0.00 6.46
327 328 1.741770 CCACCTCACTGTTAGCCGC 60.742 63.158 0.00 0.00 0.00 6.53
328 329 1.079127 CCCACCTCACTGTTAGCCG 60.079 63.158 0.00 0.00 0.00 5.52
329 330 0.250513 CTCCCACCTCACTGTTAGCC 59.749 60.000 0.00 0.00 0.00 3.93
330 331 0.391793 GCTCCCACCTCACTGTTAGC 60.392 60.000 0.00 0.00 0.00 3.09
331 332 0.976641 TGCTCCCACCTCACTGTTAG 59.023 55.000 0.00 0.00 0.00 2.34
332 333 0.976641 CTGCTCCCACCTCACTGTTA 59.023 55.000 0.00 0.00 0.00 2.41
333 334 1.757306 CTGCTCCCACCTCACTGTT 59.243 57.895 0.00 0.00 0.00 3.16
334 335 2.219875 CCTGCTCCCACCTCACTGT 61.220 63.158 0.00 0.00 0.00 3.55
335 336 0.904865 TACCTGCTCCCACCTCACTG 60.905 60.000 0.00 0.00 0.00 3.66
336 337 0.043334 ATACCTGCTCCCACCTCACT 59.957 55.000 0.00 0.00 0.00 3.41
337 338 0.466124 GATACCTGCTCCCACCTCAC 59.534 60.000 0.00 0.00 0.00 3.51
338 339 0.042581 TGATACCTGCTCCCACCTCA 59.957 55.000 0.00 0.00 0.00 3.86
339 340 1.204146 TTGATACCTGCTCCCACCTC 58.796 55.000 0.00 0.00 0.00 3.85
340 341 1.668826 TTTGATACCTGCTCCCACCT 58.331 50.000 0.00 0.00 0.00 4.00
341 342 2.507407 TTTTGATACCTGCTCCCACC 57.493 50.000 0.00 0.00 0.00 4.61
358 359 2.816337 CGTCCCACCTACCATGGTTTTT 60.816 50.000 25.38 4.16 38.45 1.94
359 360 1.271707 CGTCCCACCTACCATGGTTTT 60.272 52.381 25.38 4.57 38.45 2.43
360 361 0.326927 CGTCCCACCTACCATGGTTT 59.673 55.000 25.38 4.98 38.45 3.27
361 362 0.545787 TCGTCCCACCTACCATGGTT 60.546 55.000 25.38 1.14 38.45 3.67
362 363 0.545787 TTCGTCCCACCTACCATGGT 60.546 55.000 23.55 23.55 41.77 3.55
363 364 0.616371 TTTCGTCCCACCTACCATGG 59.384 55.000 11.19 11.19 36.94 3.66
364 365 2.483014 TTTTCGTCCCACCTACCATG 57.517 50.000 0.00 0.00 0.00 3.66
365 366 4.847990 TTATTTTCGTCCCACCTACCAT 57.152 40.909 0.00 0.00 0.00 3.55
366 367 4.637387 TTTATTTTCGTCCCACCTACCA 57.363 40.909 0.00 0.00 0.00 3.25
367 368 4.577693 GGATTTATTTTCGTCCCACCTACC 59.422 45.833 0.00 0.00 0.00 3.18
368 369 4.271776 CGGATTTATTTTCGTCCCACCTAC 59.728 45.833 0.00 0.00 0.00 3.18
369 370 4.444536 CGGATTTATTTTCGTCCCACCTA 58.555 43.478 0.00 0.00 0.00 3.08
370 371 3.275999 CGGATTTATTTTCGTCCCACCT 58.724 45.455 0.00 0.00 0.00 4.00
371 372 2.356695 CCGGATTTATTTTCGTCCCACC 59.643 50.000 0.00 0.00 0.00 4.61
372 373 3.272581 TCCGGATTTATTTTCGTCCCAC 58.727 45.455 0.00 0.00 0.00 4.61
373 374 3.630892 TCCGGATTTATTTTCGTCCCA 57.369 42.857 0.00 0.00 0.00 4.37
374 375 3.242511 CGTTCCGGATTTATTTTCGTCCC 60.243 47.826 4.15 0.00 0.00 4.46
375 376 3.931824 CGTTCCGGATTTATTTTCGTCC 58.068 45.455 4.15 0.00 0.00 4.79
390 391 1.336125 GGTATGGTAGTCTCCGTTCCG 59.664 57.143 0.00 0.00 0.00 4.30
391 392 2.381911 TGGTATGGTAGTCTCCGTTCC 58.618 52.381 0.00 0.00 35.41 3.62
392 393 3.446516 AGTTGGTATGGTAGTCTCCGTTC 59.553 47.826 0.00 0.00 0.00 3.95
393 394 3.438183 AGTTGGTATGGTAGTCTCCGTT 58.562 45.455 0.00 0.00 0.00 4.44
394 395 3.097342 AGTTGGTATGGTAGTCTCCGT 57.903 47.619 0.00 0.00 0.00 4.69
395 396 4.885907 TCTTAGTTGGTATGGTAGTCTCCG 59.114 45.833 0.00 0.00 0.00 4.63
396 397 5.221009 CGTCTTAGTTGGTATGGTAGTCTCC 60.221 48.000 0.00 0.00 0.00 3.71
397 398 5.356470 ACGTCTTAGTTGGTATGGTAGTCTC 59.644 44.000 0.00 0.00 0.00 3.36
398 399 5.259632 ACGTCTTAGTTGGTATGGTAGTCT 58.740 41.667 0.00 0.00 0.00 3.24
399 400 5.573337 ACGTCTTAGTTGGTATGGTAGTC 57.427 43.478 0.00 0.00 0.00 2.59
400 401 5.990120 AACGTCTTAGTTGGTATGGTAGT 57.010 39.130 0.00 0.00 32.39 2.73
401 402 7.325660 TCTAACGTCTTAGTTGGTATGGTAG 57.674 40.000 0.00 0.00 34.73 3.18
402 403 7.394359 ACTTCTAACGTCTTAGTTGGTATGGTA 59.606 37.037 0.00 0.00 34.73 3.25
403 404 6.210185 ACTTCTAACGTCTTAGTTGGTATGGT 59.790 38.462 0.00 0.00 34.73 3.55
404 405 6.628185 ACTTCTAACGTCTTAGTTGGTATGG 58.372 40.000 0.00 0.00 34.73 2.74
405 406 8.671921 TCTACTTCTAACGTCTTAGTTGGTATG 58.328 37.037 0.00 0.00 34.73 2.39
406 407 8.798859 TCTACTTCTAACGTCTTAGTTGGTAT 57.201 34.615 0.00 0.00 34.73 2.73
407 408 8.097038 TCTCTACTTCTAACGTCTTAGTTGGTA 58.903 37.037 0.00 0.00 34.73 3.25
408 409 6.939163 TCTCTACTTCTAACGTCTTAGTTGGT 59.061 38.462 0.00 0.00 34.73 3.67
409 410 7.375106 TCTCTACTTCTAACGTCTTAGTTGG 57.625 40.000 0.00 0.00 35.70 3.77
410 411 9.279904 CAATCTCTACTTCTAACGTCTTAGTTG 57.720 37.037 0.00 0.00 35.70 3.16
411 412 9.228949 TCAATCTCTACTTCTAACGTCTTAGTT 57.771 33.333 0.00 0.00 38.07 2.24
412 413 8.789825 TCAATCTCTACTTCTAACGTCTTAGT 57.210 34.615 0.00 0.00 32.45 2.24
455 456 2.181975 CCCATCCCATGCAGAGTTTTT 58.818 47.619 0.00 0.00 0.00 1.94
456 457 1.620524 CCCCATCCCATGCAGAGTTTT 60.621 52.381 0.00 0.00 0.00 2.43
457 458 0.032813 CCCCATCCCATGCAGAGTTT 60.033 55.000 0.00 0.00 0.00 2.66
458 459 1.616921 CCCCATCCCATGCAGAGTT 59.383 57.895 0.00 0.00 0.00 3.01
459 460 2.389449 CCCCCATCCCATGCAGAGT 61.389 63.158 0.00 0.00 0.00 3.24
460 461 1.432852 ATCCCCCATCCCATGCAGAG 61.433 60.000 0.00 0.00 0.00 3.35
461 462 1.387781 ATCCCCCATCCCATGCAGA 60.388 57.895 0.00 0.00 0.00 4.26
462 463 1.228769 CATCCCCCATCCCATGCAG 60.229 63.158 0.00 0.00 0.00 4.41
463 464 2.781300 CCATCCCCCATCCCATGCA 61.781 63.158 0.00 0.00 0.00 3.96
464 465 2.118951 CCATCCCCCATCCCATGC 59.881 66.667 0.00 0.00 0.00 4.06
465 466 2.856360 CCCATCCCCCATCCCATG 59.144 66.667 0.00 0.00 0.00 3.66
466 467 2.455122 CCCCATCCCCCATCCCAT 60.455 66.667 0.00 0.00 0.00 4.00
467 468 4.881381 CCCCCATCCCCCATCCCA 62.881 72.222 0.00 0.00 0.00 4.37
468 469 3.855831 ATCCCCCATCCCCCATCCC 62.856 68.421 0.00 0.00 0.00 3.85
469 470 2.120854 ATCCCCCATCCCCCATCC 60.121 66.667 0.00 0.00 0.00 3.51
470 471 2.551413 CCATCCCCCATCCCCCATC 61.551 68.421 0.00 0.00 0.00 3.51
471 472 2.455122 CCATCCCCCATCCCCCAT 60.455 66.667 0.00 0.00 0.00 4.00
492 494 1.880027 GGGTATGATTCGTTGGATGGC 59.120 52.381 0.00 0.00 0.00 4.40
566 568 3.503839 GTTGTGGGGGTGGGTCCA 61.504 66.667 0.00 0.00 38.11 4.02
722 728 4.589675 TGTGGGGCCCGTGGTTTC 62.590 66.667 19.83 0.00 0.00 2.78
739 745 1.470051 GCTTTCTCTCTCGGGAGTCT 58.530 55.000 13.10 0.00 40.29 3.24
743 749 1.686110 GGGGCTTTCTCTCTCGGGA 60.686 63.158 0.00 0.00 0.00 5.14
744 750 1.990060 TGGGGCTTTCTCTCTCGGG 60.990 63.158 0.00 0.00 0.00 5.14
745 751 1.219393 GTGGGGCTTTCTCTCTCGG 59.781 63.158 0.00 0.00 0.00 4.63
746 752 1.219393 GGTGGGGCTTTCTCTCTCG 59.781 63.158 0.00 0.00 0.00 4.04
747 753 0.035915 GTGGTGGGGCTTTCTCTCTC 60.036 60.000 0.00 0.00 0.00 3.20
748 754 1.492993 GGTGGTGGGGCTTTCTCTCT 61.493 60.000 0.00 0.00 0.00 3.10
749 755 1.002011 GGTGGTGGGGCTTTCTCTC 60.002 63.158 0.00 0.00 0.00 3.20
750 756 1.774217 TGGTGGTGGGGCTTTCTCT 60.774 57.895 0.00 0.00 0.00 3.10
751 757 1.603739 GTGGTGGTGGGGCTTTCTC 60.604 63.158 0.00 0.00 0.00 2.87
752 758 2.520968 GTGGTGGTGGGGCTTTCT 59.479 61.111 0.00 0.00 0.00 2.52
753 759 2.983592 CGTGGTGGTGGGGCTTTC 60.984 66.667 0.00 0.00 0.00 2.62
804 810 1.155323 ACTGCCATCCATCCATCCAT 58.845 50.000 0.00 0.00 0.00 3.41
809 815 1.307309 CCCAACTGCCATCCATCCA 59.693 57.895 0.00 0.00 0.00 3.41
949 970 0.243636 TCTTGAAGAGCGATGCGTGA 59.756 50.000 0.00 0.00 0.00 4.35
963 984 2.616842 GTTGGCCGAAACTCTTTCTTGA 59.383 45.455 0.00 0.00 37.52 3.02
1796 1835 7.676004 TCTGGACAAATTCTGTGACTATTACA 58.324 34.615 0.00 0.00 38.84 2.41
1950 1997 3.788227 AAGGTAGGAAGTGTCATGCAA 57.212 42.857 0.00 0.00 0.00 4.08
2100 2150 5.070001 AGTACTTGCCATTTCTTGCTTGTA 58.930 37.500 0.00 0.00 0.00 2.41
2105 2155 7.281100 ACTCTATTAGTACTTGCCATTTCTTGC 59.719 37.037 0.00 0.00 36.36 4.01
2128 2189 5.063564 CGGTCTTAATTAAGTTGCTGGACTC 59.936 44.000 21.69 7.23 34.93 3.36
2197 2258 2.502510 GCGGTTGCAATGCGAGTG 60.503 61.111 0.59 0.00 42.15 3.51
2351 2412 2.659897 GGAGCAGCGGCATACTCG 60.660 66.667 12.44 0.00 44.61 4.18
2352 2413 2.659897 CGGAGCAGCGGCATACTC 60.660 66.667 12.44 5.57 44.61 2.59
2353 2414 2.521958 AAACGGAGCAGCGGCATACT 62.522 55.000 12.44 0.00 44.61 2.12
2354 2415 1.644786 AAAACGGAGCAGCGGCATAC 61.645 55.000 12.44 1.84 44.61 2.39
2355 2416 0.958382 AAAAACGGAGCAGCGGCATA 60.958 50.000 12.44 0.00 44.61 3.14
2356 2417 2.268076 AAAAACGGAGCAGCGGCAT 61.268 52.632 12.44 0.00 44.61 4.40
2381 2446 0.322277 AGACCCAGCATGCAGTTCAG 60.322 55.000 21.98 4.57 31.97 3.02
2407 2478 0.608582 AGTACGACAAGCGGAGGTCT 60.609 55.000 0.00 0.00 46.49 3.85
2423 2494 1.134521 CAGGCTTGGTAATCGCCAGTA 60.135 52.381 2.12 0.00 46.14 2.74
2434 2505 1.597027 CCGAACGAACAGGCTTGGT 60.597 57.895 0.00 0.00 0.00 3.67
2525 2596 4.261572 CGAACCCTTGTGTCAATTGTTGAT 60.262 41.667 5.13 0.00 42.47 2.57
2533 2604 0.394488 TTGGCGAACCCTTGTGTCAA 60.394 50.000 0.00 0.00 33.59 3.18
2539 2610 2.880963 TTCTTTTTGGCGAACCCTTG 57.119 45.000 0.00 0.00 33.59 3.61
2543 2614 5.788055 TTTTCTTTTCTTTTTGGCGAACC 57.212 34.783 0.00 0.00 0.00 3.62
2544 2615 6.686679 CCATTTTTCTTTTCTTTTTGGCGAAC 59.313 34.615 0.00 0.00 0.00 3.95
2553 2624 7.553760 ACATCAACTGCCATTTTTCTTTTCTTT 59.446 29.630 0.00 0.00 0.00 2.52
2554 2625 7.049754 ACATCAACTGCCATTTTTCTTTTCTT 58.950 30.769 0.00 0.00 0.00 2.52
2555 2626 6.585416 ACATCAACTGCCATTTTTCTTTTCT 58.415 32.000 0.00 0.00 0.00 2.52
2556 2627 6.849588 ACATCAACTGCCATTTTTCTTTTC 57.150 33.333 0.00 0.00 0.00 2.29
2560 2631 6.403866 TTGTACATCAACTGCCATTTTTCT 57.596 33.333 0.00 0.00 0.00 2.52
2561 2632 7.599998 AGAATTGTACATCAACTGCCATTTTTC 59.400 33.333 0.00 0.00 38.97 2.29
2567 2638 5.769662 AGAAAGAATTGTACATCAACTGCCA 59.230 36.000 0.00 0.00 38.97 4.92
2568 2639 6.259550 AGAAAGAATTGTACATCAACTGCC 57.740 37.500 0.00 0.00 38.97 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.