Multiple sequence alignment - TraesCS7D01G151100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G151100 chr7D 100.000 2615 0 0 1 2615 100300770 100298156 0.000000e+00 4830.0
1 TraesCS7D01G151100 chr7D 82.341 504 38 20 500 978 63047650 63048127 8.770000e-105 390.0
2 TraesCS7D01G151100 chr7D 100.000 185 0 0 2431 2615 100291369 100291185 2.490000e-90 342.0
3 TraesCS7D01G151100 chr7D 100.000 185 0 0 2431 2615 177932889 177933073 2.490000e-90 342.0
4 TraesCS7D01G151100 chr7D 96.078 204 6 2 2413 2615 80157400 80157198 5.390000e-87 331.0
5 TraesCS7D01G151100 chr7D 90.476 126 12 0 1044 1169 100284857 100284732 1.610000e-37 167.0
6 TraesCS7D01G151100 chr7D 92.045 88 6 1 430 516 63047534 63047621 3.530000e-24 122.0
7 TraesCS7D01G151100 chr7D 83.178 107 18 0 1080 1186 100283865 100283759 5.960000e-17 99.0
8 TraesCS7D01G151100 chr7B 85.213 1481 139 36 996 2430 55857397 55855951 0.000000e+00 1448.0
9 TraesCS7D01G151100 chr7B 89.868 227 11 6 81 295 55858349 55858123 5.510000e-72 281.0
10 TraesCS7D01G151100 chr7B 81.395 344 36 14 359 691 55858126 55857800 3.340000e-64 255.0
11 TraesCS7D01G151100 chr7B 97.561 82 1 1 1 82 55858553 55858473 3.510000e-29 139.0
12 TraesCS7D01G151100 chr7B 96.875 32 1 0 687 718 55857773 55857742 1.000000e-03 54.7
13 TraesCS7D01G151100 chr7A 93.188 367 15 5 1250 1607 102540024 102539659 4.960000e-147 531.0
14 TraesCS7D01G151100 chr7A 85.468 406 25 14 753 1157 102540421 102540049 2.440000e-105 392.0
15 TraesCS7D01G151100 chr7A 91.146 192 13 4 335 526 102541098 102540911 9.290000e-65 257.0
16 TraesCS7D01G151100 chr7A 89.831 118 9 3 595 712 102540782 102540668 5.830000e-32 148.0
17 TraesCS7D01G151100 chr5B 84.154 467 66 8 1805 2267 553702085 553702547 1.850000e-121 446.0
18 TraesCS7D01G151100 chr6A 79.968 624 105 11 1809 2419 509556814 509557430 2.390000e-120 442.0
19 TraesCS7D01G151100 chr6A 83.795 469 65 9 1790 2252 97310379 97309916 4.000000e-118 435.0
20 TraesCS7D01G151100 chr6D 82.600 477 80 3 1826 2301 368735376 368735850 4.030000e-113 418.0
21 TraesCS7D01G151100 chr6D 82.906 468 69 10 1791 2252 80662778 80662316 6.740000e-111 411.0
22 TraesCS7D01G151100 chr6D 98.462 195 2 1 2422 2615 277275085 277275279 2.490000e-90 342.0
23 TraesCS7D01G151100 chr6D 97.436 195 4 1 2422 2615 88759179 88758985 5.390000e-87 331.0
24 TraesCS7D01G151100 chrUn 81.445 512 80 11 1764 2271 293011611 293011111 3.130000e-109 405.0
25 TraesCS7D01G151100 chrUn 81.445 512 80 11 1764 2271 320239686 320239186 3.130000e-109 405.0
26 TraesCS7D01G151100 chr1D 82.553 470 69 11 1790 2252 483406562 483407025 4.050000e-108 401.0
27 TraesCS7D01G151100 chr1D 98.429 191 1 2 2426 2615 455141380 455141191 4.170000e-88 335.0
28 TraesCS7D01G151100 chr4D 99.462 186 0 1 2431 2615 74379920 74379735 1.160000e-88 337.0
29 TraesCS7D01G151100 chr5D 98.429 191 2 1 2426 2615 326434675 326434485 4.170000e-88 335.0
30 TraesCS7D01G151100 chr5D 97.927 193 3 1 2424 2615 489992734 489992926 1.500000e-87 333.0
31 TraesCS7D01G151100 chr2D 79.302 430 69 15 2014 2427 15776792 15777217 1.530000e-72 283.0
32 TraesCS7D01G151100 chr5A 78.125 96 11 7 1648 1735 659502693 659502786 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G151100 chr7D 100298156 100300770 2614 True 4830.00 4830 100.00000 1 2615 1 chr7D.!!$R3 2614
1 TraesCS7D01G151100 chr7D 63047534 63048127 593 False 256.00 390 87.19300 430 978 2 chr7D.!!$F2 548
2 TraesCS7D01G151100 chr7B 55855951 55858553 2602 True 435.54 1448 90.18240 1 2430 5 chr7B.!!$R1 2429
3 TraesCS7D01G151100 chr7A 102539659 102541098 1439 True 332.00 531 89.90825 335 1607 4 chr7A.!!$R1 1272
4 TraesCS7D01G151100 chr6A 509556814 509557430 616 False 442.00 442 79.96800 1809 2419 1 chr6A.!!$F1 610
5 TraesCS7D01G151100 chrUn 293011111 293011611 500 True 405.00 405 81.44500 1764 2271 1 chrUn.!!$R1 507
6 TraesCS7D01G151100 chrUn 320239186 320239686 500 True 405.00 405 81.44500 1764 2271 1 chrUn.!!$R2 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
593 783 0.251653 TCAAGCACGTACTCCCTCCT 60.252 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2556 3090 0.036306 ACTCCATCAACCCCGTTCAC 59.964 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 236 5.116882 GTCTGTCAATACACCCTTCATACC 58.883 45.833 0.00 0.00 0.00 2.73
131 257 9.586435 CATACCGCATTACATCTCTTGATATAA 57.414 33.333 0.00 0.00 0.00 0.98
186 312 3.945285 GGATTTCGGGTGTACAACATCAT 59.055 43.478 14.02 0.00 28.66 2.45
222 360 4.608948 AAGAAACTACCCAGAGAGTGTG 57.391 45.455 0.00 0.00 0.00 3.82
291 429 3.084039 CTGGAAGCTATTGCAACCTTCA 58.916 45.455 25.24 16.06 42.74 3.02
292 430 2.819608 TGGAAGCTATTGCAACCTTCAC 59.180 45.455 25.24 18.61 42.74 3.18
293 431 2.164422 GGAAGCTATTGCAACCTTCACC 59.836 50.000 25.24 13.82 42.74 4.02
294 432 2.584835 AGCTATTGCAACCTTCACCA 57.415 45.000 0.00 0.00 42.74 4.17
295 433 3.091633 AGCTATTGCAACCTTCACCAT 57.908 42.857 0.00 0.00 42.74 3.55
296 434 2.756760 AGCTATTGCAACCTTCACCATG 59.243 45.455 0.00 0.00 42.74 3.66
297 435 2.159198 GCTATTGCAACCTTCACCATGG 60.159 50.000 11.19 11.19 39.41 3.66
298 436 2.014010 ATTGCAACCTTCACCATGGT 57.986 45.000 13.00 13.00 38.35 3.55
299 437 1.039068 TTGCAACCTTCACCATGGTG 58.961 50.000 35.00 35.00 46.64 4.17
308 446 4.101448 ACCATGGTGAGGCCTCGC 62.101 66.667 34.02 34.02 39.26 5.03
309 447 3.790437 CCATGGTGAGGCCTCGCT 61.790 66.667 38.00 22.12 39.85 4.93
310 448 2.270205 CATGGTGAGGCCTCGCTT 59.730 61.111 38.00 25.93 39.85 4.68
311 449 1.377725 CATGGTGAGGCCTCGCTTT 60.378 57.895 38.00 25.61 39.85 3.51
312 450 0.962356 CATGGTGAGGCCTCGCTTTT 60.962 55.000 38.00 23.40 39.85 2.27
313 451 0.618458 ATGGTGAGGCCTCGCTTTTA 59.382 50.000 38.00 24.61 39.85 1.52
314 452 0.618458 TGGTGAGGCCTCGCTTTTAT 59.382 50.000 38.00 0.00 39.85 1.40
315 453 1.834896 TGGTGAGGCCTCGCTTTTATA 59.165 47.619 38.00 18.93 39.85 0.98
316 454 2.438021 TGGTGAGGCCTCGCTTTTATAT 59.562 45.455 38.00 0.00 39.85 0.86
317 455 3.118038 TGGTGAGGCCTCGCTTTTATATT 60.118 43.478 38.00 0.00 39.85 1.28
318 456 3.251004 GGTGAGGCCTCGCTTTTATATTG 59.749 47.826 38.00 0.00 39.85 1.90
319 457 3.877508 GTGAGGCCTCGCTTTTATATTGT 59.122 43.478 34.32 0.00 37.16 2.71
320 458 3.876914 TGAGGCCTCGCTTTTATATTGTG 59.123 43.478 27.43 0.00 0.00 3.33
321 459 2.618709 AGGCCTCGCTTTTATATTGTGC 59.381 45.455 0.00 0.00 0.00 4.57
322 460 2.357637 GGCCTCGCTTTTATATTGTGCA 59.642 45.455 0.00 0.00 0.00 4.57
323 461 3.004734 GGCCTCGCTTTTATATTGTGCAT 59.995 43.478 0.00 0.00 0.00 3.96
324 462 3.976942 GCCTCGCTTTTATATTGTGCATG 59.023 43.478 0.00 0.00 0.00 4.06
325 463 4.498009 GCCTCGCTTTTATATTGTGCATGT 60.498 41.667 0.00 0.00 0.00 3.21
326 464 4.971830 CCTCGCTTTTATATTGTGCATGTG 59.028 41.667 0.00 0.00 0.00 3.21
327 465 5.220835 CCTCGCTTTTATATTGTGCATGTGA 60.221 40.000 0.00 0.00 0.00 3.58
328 466 6.188400 TCGCTTTTATATTGTGCATGTGAA 57.812 33.333 0.00 0.00 0.00 3.18
329 467 6.794374 TCGCTTTTATATTGTGCATGTGAAT 58.206 32.000 0.00 0.00 0.00 2.57
330 468 7.257003 TCGCTTTTATATTGTGCATGTGAATT 58.743 30.769 0.00 0.00 0.00 2.17
331 469 7.431960 TCGCTTTTATATTGTGCATGTGAATTC 59.568 33.333 0.00 0.00 0.00 2.17
332 470 7.549649 GCTTTTATATTGTGCATGTGAATTCG 58.450 34.615 0.04 0.00 0.00 3.34
333 471 7.448588 TTTTATATTGTGCATGTGAATTCGC 57.551 32.000 12.17 12.17 0.00 4.70
343 481 2.020720 TGTGAATTCGCACAAGTGGTT 58.979 42.857 17.57 0.00 45.08 3.67
356 494 5.812127 GCACAAGTGGTTTTCTTCTGAATTT 59.188 36.000 2.00 0.00 31.56 1.82
405 548 3.795877 CAGCACTGGAACCAACAAAAAT 58.204 40.909 0.00 0.00 0.00 1.82
407 550 4.034279 CAGCACTGGAACCAACAAAAATTG 59.966 41.667 0.00 0.00 0.00 2.32
420 563 8.268823 CCAACAAAAATTGGTCGATTATATCG 57.731 34.615 2.80 2.80 45.70 2.92
465 608 2.288666 GATCCTTTGCCAATCGTAGCA 58.711 47.619 0.00 0.00 37.18 3.49
564 754 2.234300 TCTCGGTGTTGGTTCAGTTC 57.766 50.000 0.00 0.00 0.00 3.01
581 771 3.743396 CAGTTCTCTGGTAAGTCAAGCAC 59.257 47.826 0.00 0.00 37.97 4.40
593 783 0.251653 TCAAGCACGTACTCCCTCCT 60.252 55.000 0.00 0.00 0.00 3.69
617 840 1.392510 GTCCGGAATTAGTTGTCGTGC 59.607 52.381 5.23 0.00 0.00 5.34
619 842 1.393539 CCGGAATTAGTTGTCGTGCAG 59.606 52.381 0.00 0.00 0.00 4.41
750 1004 1.672356 CAAGCTCCCGTGGAACCTG 60.672 63.158 0.00 0.00 0.00 4.00
836 1311 5.840940 GGCACGAGTATGGAAATATGTAC 57.159 43.478 0.00 0.00 0.00 2.90
853 1328 2.827921 TGTACCCGGAAAAGTCTAGTCC 59.172 50.000 0.73 0.00 0.00 3.85
856 1331 2.707257 ACCCGGAAAAGTCTAGTCCAAA 59.293 45.455 0.73 0.00 0.00 3.28
859 1334 5.191124 ACCCGGAAAAGTCTAGTCCAAATAT 59.809 40.000 0.73 0.00 0.00 1.28
860 1335 5.758784 CCCGGAAAAGTCTAGTCCAAATATC 59.241 44.000 0.73 0.00 0.00 1.63
905 1385 2.997897 GGTCGCTGGTGGAGGAGT 60.998 66.667 0.00 0.00 0.00 3.85
911 1391 2.429610 TCGCTGGTGGAGGAGTTTATAC 59.570 50.000 0.00 0.00 0.00 1.47
946 1426 2.613977 CGAATGGACAGAAGCAAGGAGT 60.614 50.000 0.00 0.00 0.00 3.85
1162 1648 1.215647 CGGCTTCTGCTCCGTAAGT 59.784 57.895 0.00 0.00 40.72 2.24
1165 1651 1.203994 GGCTTCTGCTCCGTAAGTACA 59.796 52.381 0.00 0.00 39.59 2.90
1167 1653 2.352421 GCTTCTGCTCCGTAAGTACACA 60.352 50.000 0.00 0.00 36.03 3.72
1168 1654 3.859627 GCTTCTGCTCCGTAAGTACACAA 60.860 47.826 0.00 0.00 36.03 3.33
1169 1655 3.570926 TCTGCTCCGTAAGTACACAAG 57.429 47.619 0.00 0.00 0.00 3.16
1170 1656 3.151554 TCTGCTCCGTAAGTACACAAGA 58.848 45.455 0.00 0.00 0.00 3.02
1171 1657 3.762288 TCTGCTCCGTAAGTACACAAGAT 59.238 43.478 0.00 0.00 0.00 2.40
1172 1658 4.945543 TCTGCTCCGTAAGTACACAAGATA 59.054 41.667 0.00 0.00 0.00 1.98
1173 1659 4.990257 TGCTCCGTAAGTACACAAGATAC 58.010 43.478 0.00 0.00 0.00 2.24
1175 1661 4.797349 GCTCCGTAAGTACACAAGATACAC 59.203 45.833 0.00 0.00 0.00 2.90
1176 1662 5.392811 GCTCCGTAAGTACACAAGATACACT 60.393 44.000 0.00 0.00 0.00 3.55
1177 1663 6.187125 TCCGTAAGTACACAAGATACACTC 57.813 41.667 0.00 0.00 0.00 3.51
1179 1665 5.798934 CCGTAAGTACACAAGATACACTCAC 59.201 44.000 0.00 0.00 0.00 3.51
1180 1666 5.507180 CGTAAGTACACAAGATACACTCACG 59.493 44.000 0.00 0.00 0.00 4.35
1181 1667 3.834610 AGTACACAAGATACACTCACGC 58.165 45.455 0.00 0.00 0.00 5.34
1182 1668 3.506455 AGTACACAAGATACACTCACGCT 59.494 43.478 0.00 0.00 0.00 5.07
1184 1670 2.296190 ACACAAGATACACTCACGCTCA 59.704 45.455 0.00 0.00 0.00 4.26
1185 1671 2.663602 CACAAGATACACTCACGCTCAC 59.336 50.000 0.00 0.00 0.00 3.51
1187 1673 0.179161 AGATACACTCACGCTCACGC 60.179 55.000 0.00 0.00 45.53 5.34
1188 1674 0.179161 GATACACTCACGCTCACGCT 60.179 55.000 0.00 0.00 45.53 5.07
1189 1675 0.179161 ATACACTCACGCTCACGCTC 60.179 55.000 0.00 0.00 45.53 5.03
1190 1676 2.508755 TACACTCACGCTCACGCTCG 62.509 60.000 0.00 0.00 45.53 5.03
1191 1677 3.661131 ACTCACGCTCACGCTCGT 61.661 61.111 0.00 0.00 45.53 4.18
1192 1678 2.429236 CTCACGCTCACGCTCGTT 60.429 61.111 0.00 0.00 45.53 3.85
1193 1679 2.710971 CTCACGCTCACGCTCGTTG 61.711 63.158 0.00 0.00 45.53 4.10
1194 1680 3.767230 CACGCTCACGCTCGTTGG 61.767 66.667 0.00 0.00 45.53 3.77
1205 1691 2.435234 TCGTTGGCGAAATCCCCG 60.435 61.111 0.00 0.00 44.92 5.73
1206 1692 2.744709 CGTTGGCGAAATCCCCGT 60.745 61.111 0.00 0.00 41.33 5.28
1207 1693 2.874751 GTTGGCGAAATCCCCGTG 59.125 61.111 0.00 0.00 0.00 4.94
1229 1715 0.871722 TGTTTCGTTTCCTCCATGCG 59.128 50.000 0.00 0.00 0.00 4.73
1233 1719 2.324330 CGTTTCCTCCATGCGTGCA 61.324 57.895 0.00 0.00 0.00 4.57
1234 1720 1.647545 CGTTTCCTCCATGCGTGCAT 61.648 55.000 0.51 0.51 37.08 3.96
1235 1721 0.099436 GTTTCCTCCATGCGTGCATC 59.901 55.000 3.96 0.00 33.90 3.91
1242 1741 0.027194 CCATGCGTGCATCTCTTTCG 59.973 55.000 3.96 0.00 33.90 3.46
1244 1743 0.742281 ATGCGTGCATCTCTTTCGCT 60.742 50.000 15.25 0.73 45.69 4.93
1245 1744 1.059994 GCGTGCATCTCTTTCGCTG 59.940 57.895 8.19 0.00 42.88 5.18
1414 1914 0.390472 CGGAACTGCCTCACCTTCTC 60.390 60.000 0.00 0.00 0.00 2.87
1446 1946 0.108615 CCTCGTCGCATTCCTCAACT 60.109 55.000 0.00 0.00 0.00 3.16
1554 2063 0.677731 ATGCCGTGTGGATTGTCAGG 60.678 55.000 0.00 0.00 37.49 3.86
1684 2195 5.414765 AGGGTGAATTCTAGCTTAAAAACGG 59.585 40.000 7.05 0.00 0.00 4.44
1690 2201 5.545658 TTCTAGCTTAAAAACGGAGCATG 57.454 39.130 0.00 0.00 0.00 4.06
1696 2207 4.382754 GCTTAAAAACGGAGCATGAAAGTG 59.617 41.667 0.00 0.00 0.00 3.16
1706 2218 6.767902 ACGGAGCATGAAAGTGATATACAATT 59.232 34.615 0.00 0.00 38.47 2.32
1712 2224 8.344831 GCATGAAAGTGATATACAATTAGCACA 58.655 33.333 0.00 0.00 40.17 4.57
1713 2225 9.655769 CATGAAAGTGATATACAATTAGCACAC 57.344 33.333 0.00 0.00 40.17 3.82
1737 2260 1.004927 CGGTCTTTGCATAGTTAGCGC 60.005 52.381 0.00 0.00 33.85 5.92
1739 2262 2.678336 GGTCTTTGCATAGTTAGCGCTT 59.322 45.455 18.68 0.00 33.85 4.68
1744 2267 1.934463 CATAGTTAGCGCTTGCCCG 59.066 57.895 18.68 0.00 40.41 6.13
1755 2278 1.668628 CGCTTGCCCGTAAATTTGCTT 60.669 47.619 0.00 0.00 0.00 3.91
1757 2280 2.352715 GCTTGCCCGTAAATTTGCTTCT 60.353 45.455 0.00 0.00 0.00 2.85
1762 2285 4.461081 TGCCCGTAAATTTGCTTCTACATT 59.539 37.500 0.00 0.00 0.00 2.71
1768 2291 5.957842 AAATTTGCTTCTACATTCGTCCA 57.042 34.783 0.00 0.00 0.00 4.02
1812 2335 1.665679 CATCCAACACTGACCGCATAC 59.334 52.381 0.00 0.00 0.00 2.39
1824 2347 3.160545 GACCGCATACATTTCAAACACG 58.839 45.455 0.00 0.00 0.00 4.49
1838 2361 4.008330 TCAAACACGGTTTCAACTAACCA 58.992 39.130 6.37 0.00 46.43 3.67
1842 2365 5.217978 ACACGGTTTCAACTAACCAGATA 57.782 39.130 6.37 0.00 46.43 1.98
1845 2368 6.713450 ACACGGTTTCAACTAACCAGATAAAT 59.287 34.615 6.37 0.00 46.43 1.40
1880 2403 4.508861 ACGACGGATTTTCATATAAACCGG 59.491 41.667 0.00 0.00 36.69 5.28
1890 2413 4.055360 TCATATAAACCGGAGCACATTCG 58.945 43.478 9.46 0.00 0.00 3.34
1900 2423 3.670203 GGAGCACATTCGTTACAATTCG 58.330 45.455 0.00 0.00 0.00 3.34
1901 2424 3.485216 GGAGCACATTCGTTACAATTCGG 60.485 47.826 0.00 0.00 0.00 4.30
1924 2448 6.183360 CGGACATTTTTCATTAAAGAAGCAGC 60.183 38.462 0.00 0.00 0.00 5.25
2006 2530 1.911357 TGACCACATTCTCCATCTGCT 59.089 47.619 0.00 0.00 0.00 4.24
2009 2533 1.408405 CCACATTCTCCATCTGCTGCT 60.408 52.381 0.00 0.00 0.00 4.24
2052 2576 3.118334 TCAAAACCCGTGAAGTGAAGGTA 60.118 43.478 0.00 0.00 0.00 3.08
2202 2726 0.455815 CGTGAGGTCGATGATGGACA 59.544 55.000 9.75 0.00 36.12 4.02
2225 2749 2.852180 CGGTCCGTCACTGTCCACA 61.852 63.158 2.08 0.00 0.00 4.17
2257 2781 0.036765 CCCCGAAAGTTGGACGATGA 60.037 55.000 0.00 0.00 0.00 2.92
2267 2791 1.099295 TGGACGATGACGCGTAGGAT 61.099 55.000 13.97 4.36 45.72 3.24
2274 2798 1.456296 TGACGCGTAGGATGTGTAGT 58.544 50.000 13.97 0.00 0.00 2.73
2281 2805 2.094182 CGTAGGATGTGTAGTTGGCAGT 60.094 50.000 0.00 0.00 0.00 4.40
2283 2807 0.804989 GGATGTGTAGTTGGCAGTGC 59.195 55.000 6.55 6.55 0.00 4.40
2285 2809 1.466167 GATGTGTAGTTGGCAGTGCTG 59.534 52.381 16.11 0.00 0.00 4.41
2287 2811 1.073025 TGTAGTTGGCAGTGCTGGG 59.927 57.895 16.11 0.00 0.00 4.45
2293 2817 4.052518 GGCAGTGCTGGGGTCCAT 62.053 66.667 16.11 0.00 30.82 3.41
2343 2877 4.996113 CGACTGCGTTTGCTTTGT 57.004 50.000 0.00 0.00 43.34 2.83
2347 2881 2.258755 GACTGCGTTTGCTTTGTGTTT 58.741 42.857 0.00 0.00 43.34 2.83
2356 2890 0.303493 GCTTTGTGTTTCGAGCGACA 59.697 50.000 0.00 0.00 0.00 4.35
2436 2970 3.443045 GCTCATGGCGGTGTTGGG 61.443 66.667 0.00 0.00 0.00 4.12
2437 2971 2.751436 CTCATGGCGGTGTTGGGG 60.751 66.667 0.00 0.00 0.00 4.96
2438 2972 3.253061 TCATGGCGGTGTTGGGGA 61.253 61.111 0.00 0.00 0.00 4.81
2439 2973 2.044053 CATGGCGGTGTTGGGGAT 60.044 61.111 0.00 0.00 0.00 3.85
2440 2974 2.120909 CATGGCGGTGTTGGGGATC 61.121 63.158 0.00 0.00 0.00 3.36
2441 2975 3.697439 ATGGCGGTGTTGGGGATCG 62.697 63.158 0.00 0.00 0.00 3.69
2442 2976 4.404098 GGCGGTGTTGGGGATCGT 62.404 66.667 0.00 0.00 0.00 3.73
2443 2977 2.359478 GCGGTGTTGGGGATCGTT 60.359 61.111 0.00 0.00 0.00 3.85
2444 2978 2.686816 GCGGTGTTGGGGATCGTTG 61.687 63.158 0.00 0.00 0.00 4.10
2445 2979 2.686816 CGGTGTTGGGGATCGTTGC 61.687 63.158 0.00 0.00 0.00 4.17
2446 2980 1.602323 GGTGTTGGGGATCGTTGCA 60.602 57.895 0.00 0.00 0.00 4.08
2447 2981 1.586154 GGTGTTGGGGATCGTTGCAG 61.586 60.000 0.00 0.00 0.00 4.41
2448 2982 0.605319 GTGTTGGGGATCGTTGCAGA 60.605 55.000 0.00 0.00 0.00 4.26
2449 2983 0.109532 TGTTGGGGATCGTTGCAGAA 59.890 50.000 0.00 0.00 0.00 3.02
2450 2984 1.243902 GTTGGGGATCGTTGCAGAAA 58.756 50.000 0.00 0.00 0.00 2.52
2451 2985 1.818674 GTTGGGGATCGTTGCAGAAAT 59.181 47.619 0.00 0.00 0.00 2.17
2452 2986 2.214376 TGGGGATCGTTGCAGAAATT 57.786 45.000 0.00 0.00 0.00 1.82
2453 2987 3.358111 TGGGGATCGTTGCAGAAATTA 57.642 42.857 0.00 0.00 0.00 1.40
2454 2988 3.691575 TGGGGATCGTTGCAGAAATTAA 58.308 40.909 0.00 0.00 0.00 1.40
2455 2989 4.082845 TGGGGATCGTTGCAGAAATTAAA 58.917 39.130 0.00 0.00 0.00 1.52
2456 2990 4.524714 TGGGGATCGTTGCAGAAATTAAAA 59.475 37.500 0.00 0.00 0.00 1.52
2457 2991 5.186797 TGGGGATCGTTGCAGAAATTAAAAT 59.813 36.000 0.00 0.00 0.00 1.82
2458 2992 6.106003 GGGGATCGTTGCAGAAATTAAAATT 58.894 36.000 0.00 0.00 0.00 1.82
2459 2993 6.593770 GGGGATCGTTGCAGAAATTAAAATTT 59.406 34.615 0.37 0.37 41.06 1.82
2460 2994 7.119116 GGGGATCGTTGCAGAAATTAAAATTTT 59.881 33.333 8.75 8.75 38.64 1.82
2461 2995 8.168626 GGGATCGTTGCAGAAATTAAAATTTTC 58.831 33.333 6.72 0.00 38.64 2.29
2462 2996 8.925700 GGATCGTTGCAGAAATTAAAATTTTCT 58.074 29.630 6.72 0.00 38.64 2.52
2465 2999 8.897809 TCGTTGCAGAAATTAAAATTTTCTACG 58.102 29.630 6.72 9.14 38.64 3.51
2466 3000 7.678428 CGTTGCAGAAATTAAAATTTTCTACGC 59.322 33.333 6.72 3.58 38.64 4.42
2467 3001 8.484008 GTTGCAGAAATTAAAATTTTCTACGCA 58.516 29.630 6.72 6.02 38.64 5.24
2468 3002 8.755696 TGCAGAAATTAAAATTTTCTACGCAT 57.244 26.923 6.72 0.00 38.64 4.73
2469 3003 8.859156 TGCAGAAATTAAAATTTTCTACGCATC 58.141 29.630 6.72 0.00 38.64 3.91
2470 3004 8.859156 GCAGAAATTAAAATTTTCTACGCATCA 58.141 29.630 6.72 0.00 38.64 3.07
2472 3006 9.353999 AGAAATTAAAATTTTCTACGCATCACC 57.646 29.630 6.72 0.00 38.64 4.02
2473 3007 9.134734 GAAATTAAAATTTTCTACGCATCACCA 57.865 29.630 6.72 0.00 38.64 4.17
2474 3008 9.482627 AAATTAAAATTTTCTACGCATCACCAA 57.517 25.926 6.72 0.00 35.16 3.67
2475 3009 8.687824 ATTAAAATTTTCTACGCATCACCAAG 57.312 30.769 6.72 0.00 0.00 3.61
2476 3010 5.957842 AAATTTTCTACGCATCACCAAGA 57.042 34.783 0.00 0.00 0.00 3.02
2477 3011 6.515272 AAATTTTCTACGCATCACCAAGAT 57.485 33.333 0.00 0.00 37.48 2.40
2478 3012 5.741388 ATTTTCTACGCATCACCAAGATC 57.259 39.130 0.00 0.00 33.72 2.75
2479 3013 3.885724 TTCTACGCATCACCAAGATCA 57.114 42.857 0.00 0.00 33.72 2.92
2480 3014 3.885724 TCTACGCATCACCAAGATCAA 57.114 42.857 0.00 0.00 33.72 2.57
2481 3015 4.406648 TCTACGCATCACCAAGATCAAT 57.593 40.909 0.00 0.00 33.72 2.57
2482 3016 4.371786 TCTACGCATCACCAAGATCAATC 58.628 43.478 0.00 0.00 33.72 2.67
2483 3017 3.272574 ACGCATCACCAAGATCAATCT 57.727 42.857 0.00 0.00 39.22 2.40
2484 3018 4.406648 ACGCATCACCAAGATCAATCTA 57.593 40.909 0.00 0.00 35.76 1.98
2485 3019 4.965814 ACGCATCACCAAGATCAATCTAT 58.034 39.130 0.00 0.00 35.76 1.98
2486 3020 4.753610 ACGCATCACCAAGATCAATCTATG 59.246 41.667 0.00 0.00 35.76 2.23
2487 3021 4.153655 CGCATCACCAAGATCAATCTATGG 59.846 45.833 14.46 14.46 39.18 2.74
2488 3022 5.311265 GCATCACCAAGATCAATCTATGGA 58.689 41.667 19.34 6.96 37.92 3.41
2489 3023 5.411977 GCATCACCAAGATCAATCTATGGAG 59.588 44.000 19.34 14.57 37.92 3.86
2490 3024 6.531923 CATCACCAAGATCAATCTATGGAGT 58.468 40.000 19.34 8.56 37.92 3.85
2491 3025 6.166984 TCACCAAGATCAATCTATGGAGTC 57.833 41.667 19.34 0.00 37.92 3.36
2492 3026 5.662657 TCACCAAGATCAATCTATGGAGTCA 59.337 40.000 19.34 3.88 37.92 3.41
2493 3027 6.328410 TCACCAAGATCAATCTATGGAGTCAT 59.672 38.462 19.34 0.00 37.92 3.06
2494 3028 6.649973 CACCAAGATCAATCTATGGAGTCATC 59.350 42.308 19.34 0.00 37.92 2.92
2495 3029 6.558014 ACCAAGATCAATCTATGGAGTCATCT 59.442 38.462 19.34 0.00 37.92 2.90
2496 3030 7.732140 ACCAAGATCAATCTATGGAGTCATCTA 59.268 37.037 19.34 0.00 37.92 1.98
2497 3031 8.252417 CCAAGATCAATCTATGGAGTCATCTAG 58.748 40.741 0.00 0.00 37.31 2.43
2498 3032 7.408756 AGATCAATCTATGGAGTCATCTAGC 57.591 40.000 0.00 0.00 34.85 3.42
2499 3033 6.952938 AGATCAATCTATGGAGTCATCTAGCA 59.047 38.462 0.00 0.00 34.85 3.49
2500 3034 6.983906 TCAATCTATGGAGTCATCTAGCAA 57.016 37.500 0.00 0.00 34.96 3.91
2501 3035 6.753180 TCAATCTATGGAGTCATCTAGCAAC 58.247 40.000 0.00 0.00 34.96 4.17
2502 3036 4.837896 TCTATGGAGTCATCTAGCAACG 57.162 45.455 0.00 0.00 34.96 4.10
2503 3037 4.461198 TCTATGGAGTCATCTAGCAACGA 58.539 43.478 0.00 0.00 34.96 3.85
2504 3038 3.724508 ATGGAGTCATCTAGCAACGAG 57.275 47.619 0.00 0.00 0.00 4.18
2505 3039 2.723273 TGGAGTCATCTAGCAACGAGA 58.277 47.619 0.00 0.00 0.00 4.04
2506 3040 2.685388 TGGAGTCATCTAGCAACGAGAG 59.315 50.000 0.00 0.00 0.00 3.20
2507 3041 2.946329 GGAGTCATCTAGCAACGAGAGA 59.054 50.000 0.00 0.00 0.00 3.10
2508 3042 3.003275 GGAGTCATCTAGCAACGAGAGAG 59.997 52.174 0.00 0.00 0.00 3.20
2509 3043 3.874543 GAGTCATCTAGCAACGAGAGAGA 59.125 47.826 0.00 0.00 0.00 3.10
2510 3044 3.876914 AGTCATCTAGCAACGAGAGAGAG 59.123 47.826 0.00 0.00 0.00 3.20
2511 3045 3.003275 GTCATCTAGCAACGAGAGAGAGG 59.997 52.174 0.00 0.00 0.00 3.69
2512 3046 3.118223 TCATCTAGCAACGAGAGAGAGGA 60.118 47.826 0.00 0.00 0.00 3.71
2513 3047 2.912771 TCTAGCAACGAGAGAGAGGAG 58.087 52.381 0.00 0.00 0.00 3.69
2514 3048 2.237643 TCTAGCAACGAGAGAGAGGAGT 59.762 50.000 0.00 0.00 0.00 3.85
2515 3049 1.173043 AGCAACGAGAGAGAGGAGTG 58.827 55.000 0.00 0.00 0.00 3.51
2516 3050 0.457681 GCAACGAGAGAGAGGAGTGC 60.458 60.000 0.00 0.00 0.00 4.40
2517 3051 0.884514 CAACGAGAGAGAGGAGTGCA 59.115 55.000 0.00 0.00 0.00 4.57
2518 3052 1.476085 CAACGAGAGAGAGGAGTGCAT 59.524 52.381 0.00 0.00 0.00 3.96
2519 3053 1.388547 ACGAGAGAGAGGAGTGCATC 58.611 55.000 0.00 0.00 0.00 3.91
2520 3054 1.064758 ACGAGAGAGAGGAGTGCATCT 60.065 52.381 0.00 0.00 37.98 2.90
2521 3055 2.171659 ACGAGAGAGAGGAGTGCATCTA 59.828 50.000 0.00 0.00 34.88 1.98
2522 3056 2.548057 CGAGAGAGAGGAGTGCATCTAC 59.452 54.545 0.00 0.00 34.88 2.59
2523 3057 3.550820 GAGAGAGAGGAGTGCATCTACA 58.449 50.000 0.00 0.00 34.88 2.74
2524 3058 4.144297 GAGAGAGAGGAGTGCATCTACAT 58.856 47.826 0.00 0.00 34.88 2.29
2525 3059 5.312895 GAGAGAGAGGAGTGCATCTACATA 58.687 45.833 0.00 0.00 34.88 2.29
2526 3060 5.070001 AGAGAGAGGAGTGCATCTACATAC 58.930 45.833 0.00 0.00 34.88 2.39
2527 3061 4.148838 AGAGAGGAGTGCATCTACATACC 58.851 47.826 0.00 0.00 34.88 2.73
2528 3062 3.235200 AGAGGAGTGCATCTACATACCC 58.765 50.000 0.00 0.00 32.55 3.69
2529 3063 3.116939 AGAGGAGTGCATCTACATACCCT 60.117 47.826 0.00 0.00 32.55 4.34
2530 3064 3.643792 GAGGAGTGCATCTACATACCCTT 59.356 47.826 0.00 0.00 0.00 3.95
2531 3065 3.389329 AGGAGTGCATCTACATACCCTTG 59.611 47.826 0.00 0.00 0.00 3.61
2532 3066 3.134804 GGAGTGCATCTACATACCCTTGT 59.865 47.826 0.00 0.00 0.00 3.16
2533 3067 4.344102 GGAGTGCATCTACATACCCTTGTA 59.656 45.833 0.00 0.00 0.00 2.41
2534 3068 5.509840 GGAGTGCATCTACATACCCTTGTAG 60.510 48.000 5.47 5.47 46.85 2.74
2540 3074 2.795175 ACATACCCTTGTAGATCGCG 57.205 50.000 0.00 0.00 0.00 5.87
2541 3075 2.304092 ACATACCCTTGTAGATCGCGA 58.696 47.619 13.09 13.09 0.00 5.87
2542 3076 2.293677 ACATACCCTTGTAGATCGCGAG 59.706 50.000 16.66 0.00 0.00 5.03
2543 3077 0.666913 TACCCTTGTAGATCGCGAGC 59.333 55.000 18.21 18.21 0.00 5.03
2544 3078 1.658717 CCCTTGTAGATCGCGAGCG 60.659 63.158 19.77 11.64 41.35 5.03
2545 3079 1.658717 CCTTGTAGATCGCGAGCGG 60.659 63.158 19.77 9.89 40.25 5.52
2546 3080 1.355563 CTTGTAGATCGCGAGCGGA 59.644 57.895 19.77 8.43 40.25 5.54
2547 3081 0.248498 CTTGTAGATCGCGAGCGGAA 60.248 55.000 19.77 11.67 40.25 4.30
2548 3082 0.248498 TTGTAGATCGCGAGCGGAAG 60.248 55.000 19.77 0.00 40.25 3.46
2569 3103 1.670791 GTTCAAGTGAACGGGGTTGA 58.329 50.000 8.34 0.00 43.97 3.18
2570 3104 2.227194 GTTCAAGTGAACGGGGTTGAT 58.773 47.619 8.34 0.00 43.97 2.57
2571 3105 1.890876 TCAAGTGAACGGGGTTGATG 58.109 50.000 0.00 0.00 0.00 3.07
2572 3106 0.881118 CAAGTGAACGGGGTTGATGG 59.119 55.000 0.00 0.00 0.00 3.51
2573 3107 0.768622 AAGTGAACGGGGTTGATGGA 59.231 50.000 0.00 0.00 0.00 3.41
2574 3108 0.324943 AGTGAACGGGGTTGATGGAG 59.675 55.000 0.00 0.00 0.00 3.86
2575 3109 0.036306 GTGAACGGGGTTGATGGAGT 59.964 55.000 0.00 0.00 0.00 3.85
2576 3110 0.323629 TGAACGGGGTTGATGGAGTC 59.676 55.000 0.00 0.00 0.00 3.36
2577 3111 0.739813 GAACGGGGTTGATGGAGTCG 60.740 60.000 0.00 0.00 0.00 4.18
2578 3112 1.477685 AACGGGGTTGATGGAGTCGT 61.478 55.000 0.00 0.00 0.00 4.34
2579 3113 0.612732 ACGGGGTTGATGGAGTCGTA 60.613 55.000 0.00 0.00 0.00 3.43
2580 3114 0.179119 CGGGGTTGATGGAGTCGTAC 60.179 60.000 0.00 0.00 0.00 3.67
2581 3115 1.192428 GGGGTTGATGGAGTCGTACT 58.808 55.000 0.00 0.00 0.00 2.73
2582 3116 1.136500 GGGGTTGATGGAGTCGTACTC 59.864 57.143 6.50 6.50 44.32 2.59
2583 3117 1.202268 GGGTTGATGGAGTCGTACTCG 60.202 57.143 8.33 0.00 45.96 4.18
2584 3118 1.471684 GGTTGATGGAGTCGTACTCGT 59.528 52.381 8.33 1.85 45.96 4.18
2585 3119 2.477525 GGTTGATGGAGTCGTACTCGTC 60.478 54.545 8.33 9.13 45.96 4.20
2586 3120 1.004595 TGATGGAGTCGTACTCGTCG 58.995 55.000 8.33 0.00 45.96 5.12
2587 3121 1.005340 GATGGAGTCGTACTCGTCGT 58.995 55.000 8.33 0.00 45.96 4.34
2588 3122 0.725686 ATGGAGTCGTACTCGTCGTG 59.274 55.000 8.33 0.00 45.96 4.35
2589 3123 0.319813 TGGAGTCGTACTCGTCGTGA 60.320 55.000 0.56 0.00 45.96 4.35
2590 3124 1.005340 GGAGTCGTACTCGTCGTGAT 58.995 55.000 0.56 0.00 45.96 3.06
2591 3125 1.005137 GGAGTCGTACTCGTCGTGATC 60.005 57.143 0.56 0.00 45.96 2.92
2592 3126 1.005137 GAGTCGTACTCGTCGTGATCC 60.005 57.143 0.56 0.00 35.28 3.36
2593 3127 0.723414 GTCGTACTCGTCGTGATCCA 59.277 55.000 0.56 0.00 38.33 3.41
2594 3128 1.129251 GTCGTACTCGTCGTGATCCAA 59.871 52.381 0.56 0.00 38.33 3.53
2595 3129 1.805943 TCGTACTCGTCGTGATCCAAA 59.194 47.619 0.56 0.00 38.33 3.28
2596 3130 2.421073 TCGTACTCGTCGTGATCCAAAT 59.579 45.455 0.56 0.00 38.33 2.32
2597 3131 2.782192 CGTACTCGTCGTGATCCAAATC 59.218 50.000 0.56 0.00 0.00 2.17
2598 3132 3.729762 CGTACTCGTCGTGATCCAAATCA 60.730 47.826 0.56 0.00 39.63 2.57
2599 3133 7.861595 TCGTACTCGTCGTGATCCAAATCAC 62.862 48.000 8.20 8.20 45.52 3.06
2607 3141 2.917933 TGATCCAAATCACCGATGACC 58.082 47.619 0.00 0.00 37.79 4.02
2608 3142 1.867233 GATCCAAATCACCGATGACCG 59.133 52.381 0.00 0.00 37.79 4.79
2609 3143 0.899019 TCCAAATCACCGATGACCGA 59.101 50.000 0.00 0.00 41.76 4.69
2610 3144 1.134818 TCCAAATCACCGATGACCGAG 60.135 52.381 0.00 0.00 41.76 4.63
2611 3145 0.652592 CAAATCACCGATGACCGAGC 59.347 55.000 0.00 0.00 41.76 5.03
2612 3146 0.806102 AAATCACCGATGACCGAGCG 60.806 55.000 0.00 0.00 41.76 5.03
2613 3147 3.774959 ATCACCGATGACCGAGCGC 62.775 63.158 0.00 0.00 41.76 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 257 3.191371 GGAGGAATTGCGTTCTCATTTGT 59.809 43.478 0.00 0.00 37.01 2.83
186 312 5.888982 AGTTTCTTACCCAGAGAGTTGAA 57.111 39.130 0.00 0.00 31.12 2.69
215 341 0.470833 ACTGTCTCCAGCCACACTCT 60.471 55.000 0.00 0.00 42.81 3.24
217 343 0.839946 AAACTGTCTCCAGCCACACT 59.160 50.000 0.00 0.00 42.81 3.55
218 344 2.543777 TAAACTGTCTCCAGCCACAC 57.456 50.000 0.00 0.00 42.81 3.82
222 360 3.674997 TCATGTTAAACTGTCTCCAGCC 58.325 45.455 0.00 0.00 42.81 4.85
269 407 1.467920 AGGTTGCAATAGCTTCCAGC 58.532 50.000 0.59 0.00 42.84 4.85
278 416 3.168035 ACCATGGTGAAGGTTGCAATA 57.832 42.857 18.99 0.00 33.39 1.90
291 429 4.101448 GCGAGGCCTCACCATGGT 62.101 66.667 31.67 13.00 43.14 3.55
292 430 2.826777 AAAGCGAGGCCTCACCATGG 62.827 60.000 31.67 15.56 43.14 3.66
293 431 0.962356 AAAAGCGAGGCCTCACCATG 60.962 55.000 31.67 16.29 43.14 3.66
294 432 0.618458 TAAAAGCGAGGCCTCACCAT 59.382 50.000 31.67 15.64 43.14 3.55
295 433 0.618458 ATAAAAGCGAGGCCTCACCA 59.382 50.000 31.67 10.87 43.14 4.17
296 434 2.614829 TATAAAAGCGAGGCCTCACC 57.385 50.000 31.67 21.21 39.61 4.02
297 435 3.877508 ACAATATAAAAGCGAGGCCTCAC 59.122 43.478 31.67 23.10 0.00 3.51
298 436 3.876914 CACAATATAAAAGCGAGGCCTCA 59.123 43.478 31.67 12.23 0.00 3.86
299 437 3.304057 GCACAATATAAAAGCGAGGCCTC 60.304 47.826 23.79 23.79 0.00 4.70
300 438 2.618709 GCACAATATAAAAGCGAGGCCT 59.381 45.455 3.86 3.86 0.00 5.19
301 439 2.357637 TGCACAATATAAAAGCGAGGCC 59.642 45.455 0.00 0.00 0.00 5.19
302 440 3.691049 TGCACAATATAAAAGCGAGGC 57.309 42.857 0.00 0.00 0.00 4.70
303 441 4.971830 CACATGCACAATATAAAAGCGAGG 59.028 41.667 0.00 0.00 0.00 4.63
304 442 5.809464 TCACATGCACAATATAAAAGCGAG 58.191 37.500 0.00 0.00 0.00 5.03
305 443 5.809719 TCACATGCACAATATAAAAGCGA 57.190 34.783 0.00 0.00 0.00 4.93
306 444 7.453980 AATTCACATGCACAATATAAAAGCG 57.546 32.000 0.00 0.00 0.00 4.68
307 445 7.549649 CGAATTCACATGCACAATATAAAAGC 58.450 34.615 6.22 0.00 0.00 3.51
308 446 7.220491 TGCGAATTCACATGCACAATATAAAAG 59.780 33.333 6.22 0.00 31.31 2.27
309 447 7.031975 TGCGAATTCACATGCACAATATAAAA 58.968 30.769 6.22 0.00 31.31 1.52
310 448 6.558909 TGCGAATTCACATGCACAATATAAA 58.441 32.000 6.22 0.00 31.31 1.40
311 449 6.129053 TGCGAATTCACATGCACAATATAA 57.871 33.333 6.22 0.00 31.31 0.98
312 450 5.747951 TGCGAATTCACATGCACAATATA 57.252 34.783 6.22 0.00 31.31 0.86
313 451 4.635833 TGCGAATTCACATGCACAATAT 57.364 36.364 6.22 0.00 31.31 1.28
319 457 1.608109 ACTTGTGCGAATTCACATGCA 59.392 42.857 6.22 3.95 45.26 3.96
320 458 1.980844 CACTTGTGCGAATTCACATGC 59.019 47.619 6.22 1.10 45.26 4.06
321 459 2.030893 ACCACTTGTGCGAATTCACATG 60.031 45.455 6.22 8.59 45.26 3.21
322 460 2.229792 ACCACTTGTGCGAATTCACAT 58.770 42.857 6.22 0.00 45.26 3.21
323 461 1.674359 ACCACTTGTGCGAATTCACA 58.326 45.000 6.22 0.00 44.39 3.58
324 462 2.774439 AACCACTTGTGCGAATTCAC 57.226 45.000 6.22 0.00 37.48 3.18
325 463 3.380004 AGAAAACCACTTGTGCGAATTCA 59.620 39.130 6.22 0.00 0.00 2.57
326 464 3.964909 AGAAAACCACTTGTGCGAATTC 58.035 40.909 0.00 0.00 0.00 2.17
327 465 4.097892 AGAAGAAAACCACTTGTGCGAATT 59.902 37.500 0.00 0.00 0.00 2.17
328 466 3.632145 AGAAGAAAACCACTTGTGCGAAT 59.368 39.130 0.00 0.00 0.00 3.34
329 467 3.013921 AGAAGAAAACCACTTGTGCGAA 58.986 40.909 0.00 0.00 0.00 4.70
330 468 2.354510 CAGAAGAAAACCACTTGTGCGA 59.645 45.455 0.00 0.00 33.35 5.10
331 469 2.354510 TCAGAAGAAAACCACTTGTGCG 59.645 45.455 0.00 0.00 38.13 5.34
332 470 4.370364 TTCAGAAGAAAACCACTTGTGC 57.630 40.909 0.00 0.00 38.13 4.57
333 471 7.832503 AAAATTCAGAAGAAAACCACTTGTG 57.167 32.000 0.00 0.00 39.10 3.33
343 481 7.013846 ACGGATGTTGGTAAAATTCAGAAGAAA 59.986 33.333 0.00 0.00 37.29 2.52
415 558 8.429641 ACTCAATCCATTTGTTACTACCGATAT 58.570 33.333 0.00 0.00 36.65 1.63
420 563 8.573035 TCAAAACTCAATCCATTTGTTACTACC 58.427 33.333 0.00 0.00 36.65 3.18
437 580 4.321156 CGATTGGCAAAGGATCAAAACTCA 60.321 41.667 3.01 0.00 0.00 3.41
438 581 4.168760 CGATTGGCAAAGGATCAAAACTC 58.831 43.478 3.01 0.00 0.00 3.01
465 608 2.224281 TGCAGGATTTCGTGTCTGACTT 60.224 45.455 9.51 0.00 34.50 3.01
564 754 2.440539 ACGTGCTTGACTTACCAGAG 57.559 50.000 0.00 0.00 0.00 3.35
581 771 1.382692 GGACGGAAGGAGGGAGTACG 61.383 65.000 0.00 0.00 0.00 3.67
617 840 3.059884 CGTCCGGAATTACATCCATCTG 58.940 50.000 5.23 0.00 39.61 2.90
619 842 2.036733 TCCGTCCGGAATTACATCCATC 59.963 50.000 5.23 0.00 42.05 3.51
813 1288 3.390135 ACATATTTCCATACTCGTGCCG 58.610 45.455 0.00 0.00 0.00 5.69
814 1289 4.689345 GGTACATATTTCCATACTCGTGCC 59.311 45.833 0.00 0.00 0.00 5.01
815 1290 4.689345 GGGTACATATTTCCATACTCGTGC 59.311 45.833 0.00 0.00 0.00 5.34
816 1291 4.921515 CGGGTACATATTTCCATACTCGTG 59.078 45.833 0.00 0.00 36.88 4.35
817 1292 4.021719 CCGGGTACATATTTCCATACTCGT 60.022 45.833 0.00 0.00 39.37 4.18
818 1293 4.219070 TCCGGGTACATATTTCCATACTCG 59.781 45.833 0.00 0.00 40.43 4.18
819 1294 5.733620 TCCGGGTACATATTTCCATACTC 57.266 43.478 0.00 0.00 0.00 2.59
820 1295 6.503560 TTTCCGGGTACATATTTCCATACT 57.496 37.500 0.00 0.00 0.00 2.12
821 1296 6.769341 ACTTTTCCGGGTACATATTTCCATAC 59.231 38.462 0.00 0.00 0.00 2.39
822 1297 6.902408 ACTTTTCCGGGTACATATTTCCATA 58.098 36.000 0.00 0.00 0.00 2.74
823 1298 5.762279 ACTTTTCCGGGTACATATTTCCAT 58.238 37.500 0.00 0.00 0.00 3.41
824 1299 5.045432 AGACTTTTCCGGGTACATATTTCCA 60.045 40.000 0.00 0.00 0.00 3.53
825 1300 5.434408 AGACTTTTCCGGGTACATATTTCC 58.566 41.667 0.00 0.00 0.00 3.13
826 1301 7.270779 ACTAGACTTTTCCGGGTACATATTTC 58.729 38.462 0.00 0.00 0.00 2.17
827 1302 7.191593 ACTAGACTTTTCCGGGTACATATTT 57.808 36.000 0.00 0.00 0.00 1.40
828 1303 6.183360 GGACTAGACTTTTCCGGGTACATATT 60.183 42.308 0.00 0.00 0.00 1.28
829 1304 5.303845 GGACTAGACTTTTCCGGGTACATAT 59.696 44.000 0.00 0.00 0.00 1.78
830 1305 4.646492 GGACTAGACTTTTCCGGGTACATA 59.354 45.833 0.00 0.00 0.00 2.29
831 1306 3.450096 GGACTAGACTTTTCCGGGTACAT 59.550 47.826 0.00 0.00 0.00 2.29
832 1307 2.827921 GGACTAGACTTTTCCGGGTACA 59.172 50.000 0.00 0.00 0.00 2.90
833 1308 2.827921 TGGACTAGACTTTTCCGGGTAC 59.172 50.000 0.00 0.00 31.38 3.34
834 1309 3.173953 TGGACTAGACTTTTCCGGGTA 57.826 47.619 0.00 0.00 31.38 3.69
835 1310 2.019807 TGGACTAGACTTTTCCGGGT 57.980 50.000 0.00 0.00 31.38 5.28
836 1311 3.412237 TTTGGACTAGACTTTTCCGGG 57.588 47.619 0.00 0.00 31.38 5.73
898 1378 3.036819 ACGGAAGGGTATAAACTCCTCC 58.963 50.000 0.00 0.00 0.00 4.30
905 1385 2.093553 CGGTGGAACGGAAGGGTATAAA 60.094 50.000 0.00 0.00 39.89 1.40
946 1426 1.556911 GAGGAAAGGACTGATGGAGCA 59.443 52.381 0.00 0.00 0.00 4.26
1043 1529 0.825840 GTCTCCATCTCCTCCTCCGG 60.826 65.000 0.00 0.00 0.00 5.14
1044 1530 1.169661 CGTCTCCATCTCCTCCTCCG 61.170 65.000 0.00 0.00 0.00 4.63
1162 1648 3.504520 TGAGCGTGAGTGTATCTTGTGTA 59.495 43.478 0.00 0.00 0.00 2.90
1165 1651 2.668556 CGTGAGCGTGAGTGTATCTTGT 60.669 50.000 0.00 0.00 0.00 3.16
1167 1653 2.264109 CGTGAGCGTGAGTGTATCTT 57.736 50.000 0.00 0.00 0.00 2.40
1168 1654 3.998924 CGTGAGCGTGAGTGTATCT 57.001 52.632 0.00 0.00 0.00 1.98
1193 1679 2.828549 ATGCACGGGGATTTCGCC 60.829 61.111 3.66 3.66 44.62 5.54
1194 1680 1.933115 AACATGCACGGGGATTTCGC 61.933 55.000 0.00 0.00 0.00 4.70
1195 1681 0.525761 AAACATGCACGGGGATTTCG 59.474 50.000 0.00 0.00 0.00 3.46
1196 1682 1.467374 CGAAACATGCACGGGGATTTC 60.467 52.381 0.00 0.00 0.00 2.17
1197 1683 0.525761 CGAAACATGCACGGGGATTT 59.474 50.000 0.00 0.00 0.00 2.17
1198 1684 0.608035 ACGAAACATGCACGGGGATT 60.608 50.000 0.00 0.00 0.00 3.01
1199 1685 0.608035 AACGAAACATGCACGGGGAT 60.608 50.000 10.50 0.00 0.00 3.85
1200 1686 0.820074 AAACGAAACATGCACGGGGA 60.820 50.000 10.50 0.00 0.00 4.81
1201 1687 0.386731 GAAACGAAACATGCACGGGG 60.387 55.000 10.50 0.00 0.00 5.73
1202 1688 0.386731 GGAAACGAAACATGCACGGG 60.387 55.000 10.50 0.00 0.00 5.28
1203 1689 0.591170 AGGAAACGAAACATGCACGG 59.409 50.000 10.50 0.00 0.00 4.94
1204 1690 1.399727 GGAGGAAACGAAACATGCACG 60.400 52.381 0.00 0.00 0.00 5.34
1205 1691 1.606668 TGGAGGAAACGAAACATGCAC 59.393 47.619 0.00 0.00 0.00 4.57
1206 1692 1.974265 TGGAGGAAACGAAACATGCA 58.026 45.000 0.00 0.00 0.00 3.96
1207 1693 2.867429 CATGGAGGAAACGAAACATGC 58.133 47.619 0.00 0.00 30.78 4.06
1229 1715 1.023513 AGCCAGCGAAAGAGATGCAC 61.024 55.000 0.00 0.00 0.00 4.57
1233 1719 2.093288 TGAATCAGCCAGCGAAAGAGAT 60.093 45.455 0.00 0.00 0.00 2.75
1234 1720 1.276138 TGAATCAGCCAGCGAAAGAGA 59.724 47.619 0.00 0.00 0.00 3.10
1235 1721 1.396301 GTGAATCAGCCAGCGAAAGAG 59.604 52.381 0.00 0.00 0.00 2.85
1414 1914 0.389166 GACGAGGAGCAAGACACAGG 60.389 60.000 0.00 0.00 0.00 4.00
1554 2063 2.099098 CCCAAATAATCTCGTTGTGGGC 59.901 50.000 0.00 0.00 0.00 5.36
1664 2175 5.703592 TGCTCCGTTTTTAAGCTAGAATTCA 59.296 36.000 8.44 0.00 0.00 2.57
1670 2181 5.545658 TTCATGCTCCGTTTTTAAGCTAG 57.454 39.130 0.00 0.00 0.00 3.42
1684 2195 8.777413 TGCTAATTGTATATCACTTTCATGCTC 58.223 33.333 0.00 0.00 0.00 4.26
1690 2201 8.122952 GGTGTGTGCTAATTGTATATCACTTTC 58.877 37.037 0.00 0.00 0.00 2.62
1696 2207 4.451096 CCGGGTGTGTGCTAATTGTATATC 59.549 45.833 0.00 0.00 0.00 1.63
1706 2218 0.250124 CAAAGACCGGGTGTGTGCTA 60.250 55.000 3.30 0.00 0.00 3.49
1712 2224 0.690762 ACTATGCAAAGACCGGGTGT 59.309 50.000 3.30 0.00 0.00 4.16
1713 2225 1.821216 AACTATGCAAAGACCGGGTG 58.179 50.000 3.30 0.00 0.00 4.61
1737 2260 3.575965 AGAAGCAAATTTACGGGCAAG 57.424 42.857 0.00 0.00 0.00 4.01
1739 2262 3.413327 TGTAGAAGCAAATTTACGGGCA 58.587 40.909 0.00 0.00 0.00 5.36
1744 2267 6.837992 TGGACGAATGTAGAAGCAAATTTAC 58.162 36.000 0.00 0.00 0.00 2.01
1768 2291 3.074985 CCAACTCCCATATCCATGTCCAT 59.925 47.826 0.00 0.00 0.00 3.41
1800 2323 3.818210 TGTTTGAAATGTATGCGGTCAGT 59.182 39.130 0.00 0.00 0.00 3.41
1804 2327 2.095466 CCGTGTTTGAAATGTATGCGGT 60.095 45.455 0.00 0.00 32.99 5.68
1812 2335 6.020201 GGTTAGTTGAAACCGTGTTTGAAATG 60.020 38.462 10.18 0.00 39.62 2.32
1838 2361 5.794945 CGTCGTGTTTGCATGAAATTTATCT 59.205 36.000 0.00 0.00 41.74 1.98
1842 2365 3.049206 CCGTCGTGTTTGCATGAAATTT 58.951 40.909 0.00 0.00 41.74 1.82
1845 2368 1.300481 TCCGTCGTGTTTGCATGAAA 58.700 45.000 0.00 0.00 41.74 2.69
1880 2403 3.369756 TCCGAATTGTAACGAATGTGCTC 59.630 43.478 0.00 0.00 0.00 4.26
1900 2423 6.091305 GGCTGCTTCTTTAATGAAAAATGTCC 59.909 38.462 0.00 0.34 0.00 4.02
1901 2424 6.183360 CGGCTGCTTCTTTAATGAAAAATGTC 60.183 38.462 0.00 0.00 0.00 3.06
1917 2440 1.025113 GTTTAGGGTCCGGCTGCTTC 61.025 60.000 0.00 0.00 0.00 3.86
1924 2448 2.098618 AGGATAGGTTTAGGGTCCGG 57.901 55.000 0.00 0.00 34.19 5.14
1993 2517 1.562942 TGGAAGCAGCAGATGGAGAAT 59.437 47.619 0.00 0.00 0.00 2.40
2006 2530 2.125552 CCGTCGCTCATGGAAGCA 60.126 61.111 7.14 0.00 42.62 3.91
2009 2533 2.125552 CTGCCGTCGCTCATGGAA 60.126 61.111 0.00 0.00 31.73 3.53
2052 2576 2.282958 TTCCTCGCCGGAGACTGT 60.283 61.111 5.05 0.00 44.28 3.55
2071 2595 3.181495 CGGTCTGTCTCTCATGTTCTACC 60.181 52.174 0.00 0.00 0.00 3.18
2108 2632 4.459089 GGAGGCGACAGGGCACTC 62.459 72.222 0.00 0.00 45.36 3.51
2257 2781 1.135199 CCAACTACACATCCTACGCGT 60.135 52.381 19.17 19.17 0.00 6.01
2267 2791 0.534877 CCAGCACTGCCAACTACACA 60.535 55.000 0.00 0.00 0.00 3.72
2274 2798 4.284550 GGACCCCAGCACTGCCAA 62.285 66.667 0.00 0.00 0.00 4.52
2330 2854 1.135660 TCGAAACACAAAGCAAACGCA 60.136 42.857 0.00 0.00 0.00 5.24
2340 2874 0.179094 AGGTGTCGCTCGAAACACAA 60.179 50.000 20.47 0.00 45.99 3.33
2343 2877 0.103390 TCAAGGTGTCGCTCGAAACA 59.897 50.000 13.76 0.00 34.16 2.83
2347 2881 2.258591 GCTCAAGGTGTCGCTCGA 59.741 61.111 0.00 0.00 0.00 4.04
2387 2921 0.947244 AACTTCTTTGTGGAGCAGCG 59.053 50.000 0.00 0.00 0.00 5.18
2420 2954 2.556840 ATCCCCAACACCGCCATGAG 62.557 60.000 0.00 0.00 0.00 2.90
2430 2964 0.109532 TTCTGCAACGATCCCCAACA 59.890 50.000 0.00 0.00 0.00 3.33
2431 2965 1.243902 TTTCTGCAACGATCCCCAAC 58.756 50.000 0.00 0.00 0.00 3.77
2432 2966 2.214376 ATTTCTGCAACGATCCCCAA 57.786 45.000 0.00 0.00 0.00 4.12
2433 2967 2.214376 AATTTCTGCAACGATCCCCA 57.786 45.000 0.00 0.00 0.00 4.96
2434 2968 4.712122 TTTAATTTCTGCAACGATCCCC 57.288 40.909 0.00 0.00 0.00 4.81
2435 2969 7.595311 AAATTTTAATTTCTGCAACGATCCC 57.405 32.000 0.00 0.00 33.54 3.85
2436 2970 8.925700 AGAAAATTTTAATTTCTGCAACGATCC 58.074 29.630 2.75 0.00 43.56 3.36
2439 2973 8.897809 CGTAGAAAATTTTAATTTCTGCAACGA 58.102 29.630 13.55 0.00 44.63 3.85
2440 2974 7.678428 GCGTAGAAAATTTTAATTTCTGCAACG 59.322 33.333 14.47 14.26 44.63 4.10
2441 2975 8.484008 TGCGTAGAAAATTTTAATTTCTGCAAC 58.516 29.630 14.47 8.76 44.63 4.17
2442 2976 8.581057 TGCGTAGAAAATTTTAATTTCTGCAA 57.419 26.923 14.47 4.02 44.63 4.08
2443 2977 8.755696 ATGCGTAGAAAATTTTAATTTCTGCA 57.244 26.923 14.47 13.84 44.63 4.41
2444 2978 8.859156 TGATGCGTAGAAAATTTTAATTTCTGC 58.141 29.630 2.75 9.37 44.55 4.26
2446 2980 9.353999 GGTGATGCGTAGAAAATTTTAATTTCT 57.646 29.630 2.75 7.50 46.11 2.52
2447 2981 9.134734 TGGTGATGCGTAGAAAATTTTAATTTC 57.865 29.630 2.75 0.00 37.62 2.17
2448 2982 9.482627 TTGGTGATGCGTAGAAAATTTTAATTT 57.517 25.926 2.75 0.00 40.15 1.82
2449 2983 9.139174 CTTGGTGATGCGTAGAAAATTTTAATT 57.861 29.630 2.75 0.00 0.00 1.40
2450 2984 8.519526 TCTTGGTGATGCGTAGAAAATTTTAAT 58.480 29.630 2.75 0.00 0.00 1.40
2451 2985 7.877003 TCTTGGTGATGCGTAGAAAATTTTAA 58.123 30.769 2.75 0.00 0.00 1.52
2452 2986 7.441890 TCTTGGTGATGCGTAGAAAATTTTA 57.558 32.000 2.75 0.00 0.00 1.52
2453 2987 6.325919 TCTTGGTGATGCGTAGAAAATTTT 57.674 33.333 2.28 2.28 0.00 1.82
2454 2988 5.957842 TCTTGGTGATGCGTAGAAAATTT 57.042 34.783 0.00 0.00 0.00 1.82
2455 2989 5.647658 TGATCTTGGTGATGCGTAGAAAATT 59.352 36.000 0.00 0.00 35.14 1.82
2456 2990 5.185454 TGATCTTGGTGATGCGTAGAAAAT 58.815 37.500 0.00 0.00 35.14 1.82
2457 2991 4.574892 TGATCTTGGTGATGCGTAGAAAA 58.425 39.130 0.00 0.00 35.14 2.29
2458 2992 4.200838 TGATCTTGGTGATGCGTAGAAA 57.799 40.909 0.00 0.00 35.14 2.52
2459 2993 3.885724 TGATCTTGGTGATGCGTAGAA 57.114 42.857 0.00 0.00 35.14 2.10
2460 2994 3.885724 TTGATCTTGGTGATGCGTAGA 57.114 42.857 0.00 0.00 35.14 2.59
2461 2995 4.375272 AGATTGATCTTGGTGATGCGTAG 58.625 43.478 0.00 0.00 35.14 3.51
2462 2996 4.406648 AGATTGATCTTGGTGATGCGTA 57.593 40.909 0.00 0.00 35.14 4.42
2463 2997 3.272574 AGATTGATCTTGGTGATGCGT 57.727 42.857 0.00 0.00 35.14 5.24
2464 2998 4.153655 CCATAGATTGATCTTGGTGATGCG 59.846 45.833 0.00 0.00 38.32 4.73
2465 2999 5.311265 TCCATAGATTGATCTTGGTGATGC 58.689 41.667 15.48 0.00 38.32 3.91
2466 3000 6.531923 ACTCCATAGATTGATCTTGGTGATG 58.468 40.000 19.38 10.22 38.32 3.07
2467 3001 6.328410 TGACTCCATAGATTGATCTTGGTGAT 59.672 38.462 19.38 10.95 38.32 3.06
2468 3002 5.662657 TGACTCCATAGATTGATCTTGGTGA 59.337 40.000 19.38 6.63 38.32 4.02
2469 3003 5.922053 TGACTCCATAGATTGATCTTGGTG 58.078 41.667 15.48 15.28 38.32 4.17
2470 3004 6.558014 AGATGACTCCATAGATTGATCTTGGT 59.442 38.462 15.48 4.75 38.32 3.67
2471 3005 7.006865 AGATGACTCCATAGATTGATCTTGG 57.993 40.000 0.00 7.19 38.32 3.61
2472 3006 7.760794 GCTAGATGACTCCATAGATTGATCTTG 59.239 40.741 0.00 0.00 38.32 3.02
2473 3007 7.454066 TGCTAGATGACTCCATAGATTGATCTT 59.546 37.037 0.00 0.00 38.32 2.40
2474 3008 6.952938 TGCTAGATGACTCCATAGATTGATCT 59.047 38.462 0.00 0.00 40.86 2.75
2475 3009 7.167924 TGCTAGATGACTCCATAGATTGATC 57.832 40.000 0.00 0.00 32.09 2.92
2476 3010 7.385267 GTTGCTAGATGACTCCATAGATTGAT 58.615 38.462 0.00 0.00 32.09 2.57
2477 3011 6.515696 CGTTGCTAGATGACTCCATAGATTGA 60.516 42.308 0.00 0.00 32.09 2.57
2478 3012 5.632764 CGTTGCTAGATGACTCCATAGATTG 59.367 44.000 0.00 0.00 32.09 2.67
2479 3013 5.536538 TCGTTGCTAGATGACTCCATAGATT 59.463 40.000 0.00 0.00 32.09 2.40
2480 3014 5.073428 TCGTTGCTAGATGACTCCATAGAT 58.927 41.667 0.00 0.00 32.09 1.98
2481 3015 4.461198 TCGTTGCTAGATGACTCCATAGA 58.539 43.478 0.00 0.00 32.09 1.98
2482 3016 4.517075 TCTCGTTGCTAGATGACTCCATAG 59.483 45.833 0.00 0.00 32.09 2.23
2483 3017 4.461198 TCTCGTTGCTAGATGACTCCATA 58.539 43.478 0.00 0.00 32.09 2.74
2484 3018 3.291584 TCTCGTTGCTAGATGACTCCAT 58.708 45.455 0.00 0.00 35.29 3.41
2485 3019 2.685388 CTCTCGTTGCTAGATGACTCCA 59.315 50.000 0.00 0.00 0.00 3.86
2486 3020 2.946329 TCTCTCGTTGCTAGATGACTCC 59.054 50.000 0.00 0.00 0.00 3.85
2487 3021 3.874543 TCTCTCTCGTTGCTAGATGACTC 59.125 47.826 0.00 0.00 0.00 3.36
2488 3022 3.876914 CTCTCTCTCGTTGCTAGATGACT 59.123 47.826 0.00 0.00 0.00 3.41
2489 3023 3.003275 CCTCTCTCTCGTTGCTAGATGAC 59.997 52.174 0.00 0.00 0.00 3.06
2490 3024 3.118223 TCCTCTCTCTCGTTGCTAGATGA 60.118 47.826 0.00 0.00 0.00 2.92
2491 3025 3.210227 TCCTCTCTCTCGTTGCTAGATG 58.790 50.000 0.00 0.00 0.00 2.90
2492 3026 3.118038 ACTCCTCTCTCTCGTTGCTAGAT 60.118 47.826 0.00 0.00 0.00 1.98
2493 3027 2.237643 ACTCCTCTCTCTCGTTGCTAGA 59.762 50.000 0.00 0.00 0.00 2.43
2494 3028 2.354510 CACTCCTCTCTCTCGTTGCTAG 59.645 54.545 0.00 0.00 0.00 3.42
2495 3029 2.360844 CACTCCTCTCTCTCGTTGCTA 58.639 52.381 0.00 0.00 0.00 3.49
2496 3030 1.173043 CACTCCTCTCTCTCGTTGCT 58.827 55.000 0.00 0.00 0.00 3.91
2497 3031 0.457681 GCACTCCTCTCTCTCGTTGC 60.458 60.000 0.00 0.00 0.00 4.17
2498 3032 0.884514 TGCACTCCTCTCTCTCGTTG 59.115 55.000 0.00 0.00 0.00 4.10
2499 3033 1.748493 GATGCACTCCTCTCTCTCGTT 59.252 52.381 0.00 0.00 0.00 3.85
2500 3034 1.064758 AGATGCACTCCTCTCTCTCGT 60.065 52.381 0.00 0.00 0.00 4.18
2501 3035 1.679139 AGATGCACTCCTCTCTCTCG 58.321 55.000 0.00 0.00 0.00 4.04
2502 3036 3.550820 TGTAGATGCACTCCTCTCTCTC 58.449 50.000 0.00 0.00 0.00 3.20
2503 3037 3.660970 TGTAGATGCACTCCTCTCTCT 57.339 47.619 0.00 0.00 0.00 3.10
2504 3038 4.217550 GGTATGTAGATGCACTCCTCTCTC 59.782 50.000 0.00 0.00 0.00 3.20
2505 3039 4.148838 GGTATGTAGATGCACTCCTCTCT 58.851 47.826 0.00 0.00 0.00 3.10
2506 3040 3.257127 GGGTATGTAGATGCACTCCTCTC 59.743 52.174 0.00 0.00 0.00 3.20
2507 3041 3.116939 AGGGTATGTAGATGCACTCCTCT 60.117 47.826 0.00 0.00 0.00 3.69
2508 3042 3.235200 AGGGTATGTAGATGCACTCCTC 58.765 50.000 0.00 0.00 0.00 3.71
2509 3043 3.336509 AGGGTATGTAGATGCACTCCT 57.663 47.619 0.00 0.00 0.00 3.69
2510 3044 3.134804 ACAAGGGTATGTAGATGCACTCC 59.865 47.826 0.00 0.00 25.83 3.85
2511 3045 4.408182 ACAAGGGTATGTAGATGCACTC 57.592 45.455 0.00 0.00 25.83 3.51
2520 3054 3.479489 TCGCGATCTACAAGGGTATGTA 58.521 45.455 3.71 0.00 34.75 2.29
2521 3055 2.293677 CTCGCGATCTACAAGGGTATGT 59.706 50.000 10.36 0.00 37.32 2.29
2522 3056 2.922758 GCTCGCGATCTACAAGGGTATG 60.923 54.545 10.36 0.00 0.00 2.39
2523 3057 1.269998 GCTCGCGATCTACAAGGGTAT 59.730 52.381 10.36 0.00 0.00 2.73
2524 3058 0.666913 GCTCGCGATCTACAAGGGTA 59.333 55.000 10.36 0.00 0.00 3.69
2525 3059 1.437986 GCTCGCGATCTACAAGGGT 59.562 57.895 10.36 0.00 0.00 4.34
2526 3060 1.658717 CGCTCGCGATCTACAAGGG 60.659 63.158 10.36 0.00 42.83 3.95
2527 3061 1.658717 CCGCTCGCGATCTACAAGG 60.659 63.158 10.36 0.00 42.83 3.61
2528 3062 0.248498 TTCCGCTCGCGATCTACAAG 60.248 55.000 10.36 0.00 42.83 3.16
2529 3063 0.248498 CTTCCGCTCGCGATCTACAA 60.248 55.000 10.36 0.00 42.83 2.41
2530 3064 1.355563 CTTCCGCTCGCGATCTACA 59.644 57.895 10.36 0.00 42.83 2.74
2531 3065 2.011881 GCTTCCGCTCGCGATCTAC 61.012 63.158 10.36 0.00 42.83 2.59
2532 3066 2.331805 GCTTCCGCTCGCGATCTA 59.668 61.111 10.36 0.00 42.83 1.98
2538 3072 3.354499 CTTGAACGCTTCCGCTCGC 62.354 63.158 0.00 0.00 38.22 5.03
2539 3073 2.022129 ACTTGAACGCTTCCGCTCG 61.022 57.895 0.00 0.00 38.22 5.03
2540 3074 0.944311 TCACTTGAACGCTTCCGCTC 60.944 55.000 0.00 0.00 38.22 5.03
2541 3075 0.531974 TTCACTTGAACGCTTCCGCT 60.532 50.000 0.00 0.00 38.22 5.52
2542 3076 0.384353 GTTCACTTGAACGCTTCCGC 60.384 55.000 6.36 0.00 43.97 5.54
2543 3077 3.729004 GTTCACTTGAACGCTTCCG 57.271 52.632 6.36 0.00 43.97 4.30
2551 3085 2.226330 CATCAACCCCGTTCACTTGAA 58.774 47.619 0.00 0.00 0.00 2.69
2552 3086 1.544537 CCATCAACCCCGTTCACTTGA 60.545 52.381 0.00 0.00 0.00 3.02
2553 3087 0.881118 CCATCAACCCCGTTCACTTG 59.119 55.000 0.00 0.00 0.00 3.16
2554 3088 0.768622 TCCATCAACCCCGTTCACTT 59.231 50.000 0.00 0.00 0.00 3.16
2555 3089 0.324943 CTCCATCAACCCCGTTCACT 59.675 55.000 0.00 0.00 0.00 3.41
2556 3090 0.036306 ACTCCATCAACCCCGTTCAC 59.964 55.000 0.00 0.00 0.00 3.18
2557 3091 0.323629 GACTCCATCAACCCCGTTCA 59.676 55.000 0.00 0.00 0.00 3.18
2558 3092 0.739813 CGACTCCATCAACCCCGTTC 60.740 60.000 0.00 0.00 0.00 3.95
2559 3093 1.295423 CGACTCCATCAACCCCGTT 59.705 57.895 0.00 0.00 0.00 4.44
2560 3094 0.612732 TACGACTCCATCAACCCCGT 60.613 55.000 0.00 0.00 0.00 5.28
2561 3095 0.179119 GTACGACTCCATCAACCCCG 60.179 60.000 0.00 0.00 0.00 5.73
2562 3096 1.136500 GAGTACGACTCCATCAACCCC 59.864 57.143 0.00 0.00 39.28 4.95
2563 3097 1.202268 CGAGTACGACTCCATCAACCC 60.202 57.143 8.73 0.00 42.12 4.11
2564 3098 1.471684 ACGAGTACGACTCCATCAACC 59.528 52.381 8.73 0.00 42.12 3.77
2565 3099 2.783333 GACGAGTACGACTCCATCAAC 58.217 52.381 8.73 0.00 42.12 3.18
2566 3100 1.395954 CGACGAGTACGACTCCATCAA 59.604 52.381 8.73 0.00 42.12 2.57
2567 3101 1.004595 CGACGAGTACGACTCCATCA 58.995 55.000 8.73 0.00 42.12 3.07
2568 3102 1.005340 ACGACGAGTACGACTCCATC 58.995 55.000 0.00 6.63 42.12 3.51
2569 3103 0.725686 CACGACGAGTACGACTCCAT 59.274 55.000 0.00 0.00 42.12 3.41
2570 3104 0.319813 TCACGACGAGTACGACTCCA 60.320 55.000 0.00 0.00 42.12 3.86
2571 3105 1.005137 GATCACGACGAGTACGACTCC 60.005 57.143 0.00 0.00 42.12 3.85
2572 3106 1.005137 GGATCACGACGAGTACGACTC 60.005 57.143 0.00 0.00 41.71 3.36
2573 3107 1.005340 GGATCACGACGAGTACGACT 58.995 55.000 0.00 0.00 42.66 4.18
2574 3108 0.723414 TGGATCACGACGAGTACGAC 59.277 55.000 0.00 0.00 42.66 4.34
2575 3109 1.441738 TTGGATCACGACGAGTACGA 58.558 50.000 0.00 0.00 42.66 3.43
2576 3110 2.251869 TTTGGATCACGACGAGTACG 57.748 50.000 0.00 0.00 45.75 3.67
2577 3111 3.766151 TGATTTGGATCACGACGAGTAC 58.234 45.455 0.00 0.00 37.37 2.73
2587 3121 2.741553 CGGTCATCGGTGATTTGGATCA 60.742 50.000 0.00 0.00 36.60 2.92
2588 3122 1.867233 CGGTCATCGGTGATTTGGATC 59.133 52.381 0.00 0.00 36.60 3.36
2589 3123 1.484653 TCGGTCATCGGTGATTTGGAT 59.515 47.619 0.00 0.00 39.77 3.41
2590 3124 0.899019 TCGGTCATCGGTGATTTGGA 59.101 50.000 0.00 0.00 39.77 3.53
2591 3125 1.290203 CTCGGTCATCGGTGATTTGG 58.710 55.000 0.00 0.00 39.77 3.28
2592 3126 0.652592 GCTCGGTCATCGGTGATTTG 59.347 55.000 0.00 0.00 39.77 2.32
2593 3127 0.806102 CGCTCGGTCATCGGTGATTT 60.806 55.000 0.00 0.00 39.77 2.17
2594 3128 1.226974 CGCTCGGTCATCGGTGATT 60.227 57.895 0.00 0.00 39.77 2.57
2595 3129 2.413351 CGCTCGGTCATCGGTGAT 59.587 61.111 0.00 0.00 39.77 3.06
2596 3130 4.492160 GCGCTCGGTCATCGGTGA 62.492 66.667 0.00 0.00 39.77 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.