>input_sequence_74086
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---------------------------------------CCGGCGACCGCGTG------CTGCACCGGGGACAGCGGCAC
CCACCGGACCGGAGGAGGAGATGGAGACGGCGCCGGGTTCGCGCTGCCGCCGGTGCCTGGAGACCCTGTGCGCCGTCCTC
CTCCCGCCGCTCGGCGTCTACCTCCGCCACGGCTTCTGCTCCGTAAGTACACAAGATACACTCACGCTCACGCTCGTTGG
CGAAATCCCCGTGCATGTTTCGTTTCCTCCATGCGTGCATCT-------------CTTTCGCTGGCTGATTCACCCGATG
CATGCTGCCGCTCACTCTTT-CTTGCCGCTTGGTGCCGGAGCAGATGCGGTTCTTGATCAGCGTGCTGCGCACCATCATC
GGCTACTACTTTTGCCTTCTCTTCGTTATTCAAGCCCCCGTCATGGGTTACGTGCGGAACTGCCTCACCTTCTCCTGTGT
CTTGCTCCTCGTCGCATTCCTCAACTGCCCCAGTAATGGCGCTAACGACGACGT---------CGACGACTCCGCCACCG
CCGCCTCCTACGTCCTGGTCGCCTGACCGTGTTTGAAGATTCCATGCCGTGTGGATTGTCAGGCCCACAACGAGATTATT
TG-GGCGAGGTCTTGTCACTGTACCAAAATTGAGTTGACCCACT------------------------------------
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>chr7D_1_TraesCS7D01G151100
TGTATTGTAGAACCTTGTTCATGATAGATATTTATCTGTGAGAATAGTGCATCATGTGCCCCTTTTTTCCCCTTCCGAAA
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---------------------------------------------TAGTATGGTCTGTCAATACACCCTTCATACCGCAT
TACATCTCTTGATATAACAAATGAGAACGCAATTCCTCCTTATGTTCCAGGATTTCGGGTGTACAACATCATTCAACTCT
CTGGGTAAGAAACTACCCAGAGAGT------------GTGGCTGGAGACAGTTTAACATGATTTATTGTTATGAAATGAA
CAGTAGGCTGGAAGCTATTGCAACCTTCACCATGGTGAGGCCTCGCTTTTATATTGTGCATGTGAATTCGCACAAGTGGT
TTTCTTCTGAATTTTACCAACATCCGTGTTTGTGCAGTGTCCAGCACTGGAACCAACAA-----AAATTGGTCGATTATA
TCGGTAGTAACAAATGGATTGAGTTTTGATCCTTTGCCAATCGTAGCAAGTCAGA-CACGAAATCCTGCATATTGCTATC
CTGGTGTGTGGTATCATTTTTTGTT----------------------------------------------CTTTGAGGG
GATGTAGTATCAGATCTCGGTGTTGGTTCAGTTCTCTGGTAAGTCAAGCACGTACTCCCTCCTTCCGTCCGGAA------
---------------------------TTAGTTGTCGTGCAGATGGATGTAATTCCGGACGGAGGTAAATCAGGGTGTGA
TTGTGATGCCGTGGTGTGCCAGTTGCAGGG-------------------------------TTGCTCATTTGTAGCTCAA
GTTCAAGGGGCATCATGCTTTCTCGCAAGCTCCCGTGGAACCTGG-----------------------------------
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------------------CGACGG--------GACGGGTCTAACTTTGCAACCCTGGTCTAAAATCTGCAAGTTGCAACT
GGCACAGCGGCACGAGTATGGAAATATGTACCCGGAAAAGTCTAGTCCAAATATCA-----TGACACGAGTCAGCGCACG
CGCGGTCGGTCGCTGGTGGAGGAGTTTATACCCTTCCGTTCCACCGAATGGACAGAAGCAAGGAGTGCTCCATCAGTCCT
TTCCTCGTCCCACCCCCGCTTCCGCTTCCGCTTCCGCTTCCGGCGACCGCGTG------CTGCACCGGGGACAGCGGCAC
CCACCGGACCGGAGGAGGAGATGGAGACGGCGCCGGGTTCGCGCTGCCGCCGGTGCCTGGAGACCCTGTGCGCCGTCCTC
CTCCCGCCGCTCGGCGTCTACCTCCGCCACGGCTTCTGCTCCGTAAGTACACAAGATACACTCACGCTCACGCTCGTTGG
CGAAATCCCCGTGCATGTTTCGTTTCCTCCATGCGTGCATCT-------------CTTTCGCTGGCTGATTCACCCGATG
CATGCTGCCGCTCACTCTTT-CTTGCCGCTTGGTGCCGGAGCAGATGCGGTTCTTGATCAGCGTGCTGCGCACCATCATC
GGCTACTACTTTTGCCTTCTCTTCGTTATTCAAGCCCCCGTCATGGGTTACGTGCGGAACTGCCTCACCTTCTCCTGTGT
CTTGCTCCTCGTCGCATTCCTCAACTGCCCCAGTAATGGCGCTAACGACGACGT---------CGACGACTCCGCCACCG
CCGCCTCCTACGTCCTGGTCGCCTGACCGTGTTTGAAGATTCCATGCCGTGTGGATTGTCAGGCCCACAACGAGATTATT
TG-GGCGAGGTCTTGTCACTGTACCAAAATTGAGTTGACCCACTTAAATCCAACCTCCTTATTGTGCCTCCTT-GTGTTT
TTTTTACAAAAGGGTGAATTCTAGCTTAAAAACGGAGCATGAAAGTG-ATATACAATTAGCACACACCCGGTCTTTGCAT
AGTTAG-----------CGCTTGCCCGTAAATTTGCTTCTACATTCGTCCATGGACATGGATATGGGAGTTGGCCATCCA
ACACTGACCGCATACATTTCAAACACGGTTTCAACTAACCAGATAAATTTCATGCAAACACGACGGATTTTCATATAAAC
CGGAGCACATTCGTTACAATTCGGACATTTTTCATTAAAGAA-GCAGCCGGACCCTAAACCTATCCTACGGCGGCGCCCG
TCGTCCACTTCCTTTGTATTCCGCATCGGTGACCACATTCTCCATCTGCTGCTTCCATGAGCGACGGCAGGGTTCAAAAC
CCGTGAAGTGAAGGTACAGTCTCCGGCGAGGAAGGGTAGAACATGAGAGACAGACCGGCCCACTTGGGACAGAGTGCCCT
GTCGCCTCCCATGCCCTACTCATCCTCAGAGGAGTCCCCGACCTGTCCGTCGCCAGTGCCAGTGGACGTGAGGTCGATGA
TGGACATGGACGGTCCGTCACTGTCCACATGCCACATGCGCCCCCGAAAGTTGGACGATGACGCGTAGGATGTGTAGTTG
GCAGTGCTGGGGTCCATGACCGCCTGCGCCGCCAGTGCTTGTGCGGGCACGACTGCGTTTGCT----------TTGTGTT
TCGAGCGACACCTTGAGCACGCGTGGCCTCGTAGAGCGCCCGCTGCTCCACAAAGAAGTTCGGGTTCGCCGCGCTCATGG
CGGTGTTGGGGATCGTTGCAGAAATTAAAATTTTCTACGCATCACCAAGATCAATCTATGGAGTCATCTAGCAACGAGAG
AGAGGAGTGCATCTACATACCCTTGTAGATCGCGAGCGGAAGCGTTCAAGTGAACGGGGTTGATGGAGTCGTACTCGTCG
TGATCCAAATCACCGATGACCGAGCGCC
>chr7B_1
TGTATTGTAGAACCTCGTTCATGATAGATATTTATCTGTGAGAATAGTGCATCATGTG-CCCTTTTTTCCCCTTCCGAAA
TACTCCCTCCGTCCGAAAATAGTTGTCATCAAAATGGATAAAAGGGGATGTATTTAGACATATTTCCGTTCTAGATACAT
CTCTCTTTATTCATTTTGATGACAAGTATTTCCGGATGGAGGGAGTAGTATGGTCTGTCAATACACCCTTCATACTGCAT
TACATCTCTTGATATAGCAAATGAGAACGCAATTCCTCCTTATGTTCCAGGATTTCGGGTGTACAACATCAGTCAACTCT
CTGGGTAAGAAACTACCCAGGGTATCCTATTGCTCGCGTAGCTGGAGACAGTTAAATACGATTTATTGTTATGAAATGAA
CAGTAGACTGGAAGCGATTCCAACCTTC----------------------------------------------------
---------------ACCAACATCCGTGTTTCTGTAGTGTCCAGCACTGGAACCAAAAACAAAAAAAACAGGTGATTGTA
TCAGTAGTAACAAATGGGTGAGGTTTTGATCCTTTGCCAACCGTAGCGAGTCAGA-CACAAAATCCTGCATATTGCTATC
CTGGTGTGTGGTATCAGTTTTTGTTT-----TTCTGTTTTTTG--------------------TTTTTTGTTTTTGAGGG
GATGTTGT------------------TTCAGTTTTCTGGTAAGTCAAGCAAGTACTCCCTCCGTCCGGA-----------
------------------------------------ATGGAAATTGATGTAATTTCGGACGGAGATAAATCAGGATGTGA
TTGTGATGCCGTGATGTGCCAGTTGCAGGGCTGTATTGTATTTGCAGCTCGGCTCACCCGGTTGCTCATTTGTAGCTCAA
GTTCAAGTGGCCTTTTGTCCTCGACGTCGGCAT---------------------------------------------CG
TCAAATGGTTTCATCCTTGGCCGATCGTAGTGACTAGTGACTAGTGAGCCATACACGAAATCTGTGTTACGATCATCCAC
AAAACCGGTTTCAAAAAAGAAAAGAAAAAATCATCTACAAAACCTCGACCCGGTTGGTCTCTAGCATAGGAGAAAAGAGA
TCCGCTCCTGCCGAAACTCGACTCGACGGGTCGACGGGTCAAACTTGACAACCCTGGCCCAAAATATGCAAGTTGTAACT
GGCACAG------------------------CCGGAAAAGTCTAGTCTAATAAATACTGTATGTA---------------
--------------------------TATATCCTTCCGTTCCACCAAATGATCAGAAGCAAGGAGCGCT-----------
--------------------------------------TCCGGCGACCGCGAGCTGCACCTGCACCGGAGACAGCAGCAT
CCACCGGA--GGAGGAGGAGATGGAGACGGGGCCGGGTTCGCGCTGCCGCCGGTGCCTGGAGATCCTGTGCGCCGTCCTC
CTCCCGCCGCTCCGCGTCTACCTCCGCCACGGCTTCTGCTCCGTAAGCACCCGCCGACGAGCGAACACCC----------
-------------CATGTTTCCTTTCCTCCATGCATATGCATGCATACCTTTCGACTTTCACCAGCTGATTCACCCG---
-ATGCTGCCGCTCACTCTTTTCTTGCCGCTTGGTGCCGGAGCAGATGCGGTTCTTGATCAGCGTGCTGCGCACCATCATC
GGCTACTACTTTTGCCTTCTCTTCGTTATTCAAGCCCCCGTCACGGGTTACGTGCGGAACTACCTCGCCGTCTTCTATGT
CTTGCTCCTCGTCGCA---CTCAACCGCCCCAGTAATGGCGACAACGACGACGTCGACGAAGATGACGACTCCGCCACCG
CCGCCTCCTACGTCTTCGTCGCCTGACCGTGTTTGATGATTCCATGCCGTGTGGACTGTCAGTCCCCCAACAAGATTATT
TGTGGCGAGGTCTTGTCACTGTACCAAAATTGAGTTGACCCACTTAAATCCAACCTCCTTATTGTGCCTCCTTTGTGTTT
TTTTTACAAAAGGGCGAATTTTAGCTTAAAAACGAAGCATCAAAGTATATATACAATGAGCACGTACCCGGTCTTTGCAT
AGTTAGGGCATCTTCAACGTTGGCCCATAAATTTGCTCCCACATCCGTCCGTGGATACAGATATAGAAGTTGGCCATCCA
ATGCTGTCCGCATATATTTCAAACACTATTTCAACTAATTGGACGAAATTCATGCAAACATGGCGGATATTCATATAAAT
CAAAGCACATTCATTATAATTCAAACATTTTTATTAAAAAAAAGCAGTTGGACCCTAAACATATCCTACCGCGGTGCCTG
TCGTCCACTTCCTTTGTATTCCGCATCGGTGACCACGTTCTCCATCTGCCGCCTCCATGAGCAGTAGCGGGGTTCAAAAC
TCGTGAAGTGAAGGTGCAGTCTCCGGCGAGGAAGAGTAGAACATGAGAGACAGACTGGCCCACTTGGGACACAATGCCAT
GTCGCCTCCCACGCCCTACTCATCCTCGAAGGAGTCCCCGACCTGTTCGTCGCCAGCGCCGGTGAACATGAGGTCGATGA
TGGATGTGGACGGTCCGTCACTGTCCACCTGCCACATGCACCCTCGAAAGTTGGATGGCGGCGCATAGGACGCATAGCTG
GCGGCGTCAGAGTTCACGACCGTCTGCGCCGCCAGTCCTTGTGCGACCACAGCCGCGTTTGCT----------CTGCGTT
CCGAGCGACGCCTTGAGCACGCATGGCCTCATAGAGCGCCTGCTGCCCCGCAAAGAAGTTCGATTTCGCCGCGGTCATGG
CGG-----------------------------------------------------------------------------
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>chr7A_335
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-----------------------------------------------------------------------ACAAGTGGT
GTTCTTCTGAATTCTACCAACATCCGTGTTTGTGCAGTGTCCAGCACTGGAAT------CAAAAAAACTAGTCGATTGTA
TCAGTAGTAACAAATGGATGAAG--TTGATCCTTTGCCAATCGTAGCGAGTCAGA-CACGAAATCCTGCATATTGCTATC
CTGATTTGTGGTATCAGTTTTTGTTTTTCTCTTTTGTTTATTG--------------------TTTTTGTTTTCTGAGGG
GATGTAGTATCAGGTTTCGGTGTTGGTTCAGTTTTCTGGTAAGTCGAGCAATTACTCTCTTTGTCCGTCCGGAATTAGTC
GTCGTGCAAATAGACGTCCGTCCGGAATTAGTTGTCGTGGAAATGGATGTAATTCCGGACGGAGGTAAATGAGGGTGTGA
TTGTGACGCCGTGATGTGCCAGTTGCAGGGCTGTATT-----GGCAGCTCGGTTCACCCGGTTGCTATCGTTTGCCGGTG
TGTGCCGCGTACGTAGCAGATGAAGTTCTGGATAAGCATGTTGCTCACCATCCTCTGCTACATCGGCCCCCGTCAGGACG
TCAAATGGTTTCATCCTTGGCCGATCGTAGTGAT-------TAGTGAGCCAGACACGAAATCTGTGTTACGATCATCTAC
AAAACCGGTTTCAAAAAACAAAA---AAGATCATCTCCAAAACCTCGACCCAGCTGGT----------------------
----CTCCTGCCGAAACTCGACTG--------GACGGGTCTAACTTCGCAACCCTGGTCTAAAATTT-CAAGTTGCAACT
GGCACAG------------------------TCGGAAATGTCTAGTCTAATCTAAATATTGTGACACGAGTCAGCGCGCG
CGCGGTCGGTCGCTGGTCGAGGAG-TTTATACCCTTCGTTCCACCGAATGGACAGAAGCAAGGAGCGCTCCGTCAGTCCT
TTCCTCGCCCCACCCCCGCC------------TCCGCTTCCGGCGACCGCGAGCAGCACCTGCACCGGGGACAGCGGCAT
CCACC-----GGAGGAGGAGATGGAGACGGCGCCGGGCTCGCGGTGCCGCCGGTGCCTGGAGATCCTGTGCGCCGTCCTC
CTCCCGCCGCTCCGCGTCTACCTCCGCCACGGCTTCTGCTCC--------------------------------------
--------------ATGTTTGGTTTCCTCCATGCATGC-----------------------------GATTCAGCCGATG
CATGCTGTCGCTCACTCTTT-CTTGCCGCTTGGTGCCGGATCAGATGCGGTTCTTGATCAGCGTGCTGCGCACCATCATC
GGCTACTACTTTTGCCTTCTCTTCGTTATTCAAGCCCCCGTCATGGGTTACGTGCGGAACTGCCTCACCTTCTTCTGCGT
CTTGCTCCTCGTCGCATTCCTCAACCGCCCCAGTAATGGCGATGACGACGACGCCGACGAAGACGACGACTCCGCCACCG
CCGCCTCCTACGTCTTGGTCGCCTGACCGTGTTTGAAGATTCCATGCCGTGTGGATTGTCAGTTCCACAACGAGATTATT
TG-GGCGAGGCCTTGCCATTGTATCAAATTGAGTT---------------------------------------------
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>chr7D_430
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-----------AAATGGATGAAGTTTTGATCCGTTGCCAATCGTAACGAGTCAAGGCACGAAATCCTGCATATTGCTATC
CTGGTGTGTGGTATCATTTCCCCACAAAAAAAGAAAAGAAAAATAAAGGTGTGTGGTATCATTTTTTTGTTCTTTGAGGG
GATGTAGTATCAGATCTCGGTGTTAGTACAGTTTTCTGATAAGTCAAGCAAGTACTCCCTCCGTCCGTCCGGAA------
---------------------------TTGGTTGTCATGGAAATGGATGTAATTCCGGAAGGAGGTAAATCGGGATGTGA
TTGTGATGTCGTGGTGTGCCAGTTGCAGGGCTGTATT-----TGCAGATCGGCTCACCCGGTT--TCATTTGTAGCTCAA
GTTCAAGGGGCATCATGCTTTCTCGCAAGCTCCCGTGGAACCTCG-----------------------------------
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------------------CGACGG--------GACAGGTCTAACTTTGCAACTCTCGTCTAAAATCTGCAAGCTGCAACT
GGCACAG------------------------CCGGAAAAGTCTAGTCTAACTACTGCGACAC------AGTCAGTGCCCG
CGCGGTCGGTCGCTAGTCGAGGAG-TTATATCCTTCCGTTCCACCAAATGATCAGAAGCAAGGATCGCTCCATCCATCCT
TTGCTCGTCACACCCCC---------------------------------------------------------------
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>chrUn_1764
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---------------------------------------------CGTCCGCGGACATGAATGCGAGAGCTGTCCATCCA
ACGCTGTTTGCATATATTTCAAACACTGTTTCTACTAACCGGATGAAATTTATACAAACACGATGAATTTTCATATAAAC
CGAAGCACGTTCATCAGAATTCAAACATTTTTCATTAAAAAAAGCCGGAC--CCCAAAACCTATCCTAT---GGCGCCCG
TCGTTCACTTCCTTTATATTCCGCATCGGCGACCACGTCCTCCATCTGACGTCTCCATGAACAATGATAGTGTTCAAGAC
CTGTAAAGTGGAGGTTAGGTCTCCGGCGAGAAAAAATAGAAGATGGGAGACAGACCGACCTAGTAGGGACACAATGCCCT
GCTGCCTCCCATGCCCTACTCATCCTCAGAG---TCCGCGACCTATCTGTCGCTTGTGCCGGTAGATGTGAGGTCGATGA
TGGACGTGGACAGTCCGTCAATGTCCACCTACCACATGTGCCCCCAAAAGATGGACGATAGCGCGTAGGAGGTG------
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>chrUn_1764
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---------------------------------------------CGTCCGCGGACATGAATGCGAGAGCTGTCCATCCA
ACGCTGTTTGCATATATTTCAAACACTGTTTCTACTAACCGGATGAAATTTATACAAACACGATGAATTTTCATATAAAC
CGAAGCACGTTCATCAGAATTCAAACATTTTTCATTAAAAAAAGCCGGAC--CCCAAAACCTATCCTAT---GGCGCCCG
TCGTTCACTTCCTTTATATTCCGCATCGGCGACCACGTCCTCCATCTGACGTCTCCATGAACAATGATAGTGTTCAAGAC
CTGTAAAGTGGAGGTTAGGTCTCCGGCGAGAAAAAATAGAAGATGGGAGACAGACCGACCTAGTAGGGACACAATGCCCT
GCTGCCTCCCATGCCCTACTCATCCTCAGAG---TCCGCGACCTATCTGTCGCTTGTGCCGGTAGATGTGAGGTCGATGA
TGGACGTGGACAGTCCGTCAATGTCCACCTACCACATGTGCCCCCAAAAGATGGACGATAGCGCGTAGGAGGTG------
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>chr6A_1809
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----------CATATATTTCGAACTAAGTTTTAACTAACCGGACGAAATTCATGCAAACACGACGGATTTTCATATAAAC
CATACAAAATTTATTACATTTTAAACATTTTTTATTAAAAAG-GGTGACCGGACCTGAAGCTATCCTATGGCGGCGCCCG
TCGTTCACTTCCTTTGTATTCGGCATTGGCGACCACGTCCTCCATCTACCGTGTTCATGACTGGCGGCGGGGTTCAAGAC
CCGTGAAGTGGAGGTGTAGTCTCCGGCGAGAAAAAGTAGAACATGGGAGATAGATCGGCCCACTAGGGACACAATGCCCT
ACCGCCTCACATGCCCTAGTCATCCTCGAAGGAGTCCGCGACCTATCCGTCGA---TGCCAGTAGATGTGAGGTTGATGA
TGGACGTGGACGGTCCATCACTGTCCACCTACCACATGCGCCCC-AAAAGTTGGACGACGGCGTGTAAGACGCGTAGCTG
GCAGCGTTTTCATCCTCGACCGCCTACGCTGCCAGCGCTTGTGCGGCTGCGTCCGCGTCCAACTGCGCCATCACTGAGTT
GTGAGCGACGCGTTGAGCACGCGCGGCCTCGTAGAGCGTCTGCTACTCCACAATGAAGTTCGGGTTCGTCGC--------
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>SNPs
---------------S------------------------------------------S---------------------
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---------------------------------------------------------------------------S----
----------------S------------------------------------------------------S--------
--------------------S-SS---------------S-------------S--S-S---------------------
------S--------S---S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
S------------S------------------------------------------S----------S-S-------S--
--S----------------SS--------------------------S--------------------------------
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---------------------------------S----------------S-----------S-----------------
---------------------------------------S-S--------------------------------------
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-------------------------------------------S------------------------------------
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-------SSSSSSSSSSSSSSSSSSSSSSSS----------------S--S--SS----------------------S--
-----------------S------S-----S----------------------------------S--------------
-------------------SSSSSSSSSSSSS-------------------S---------------------------S
--------SS-----------------------------------------------------S----------------
------------S----------------------------------S--S-SSSSSSS-SSS-SSSS-SSSSSSSSSSS
SSSSSSSSSSSSS---------------------S---SSS-------------------S-SS----------------
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-------------------------------------------------------------------------S------
-------------------------S---------------S--------------------------------------
--------------S-----------------------------------------------S-----------------
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--------------S-----S-------------S-----S-----S----------S-----SS---------------
-------------------S-S----S----------S-S----S-----S-----------------------------
--S---S-------S-----------S-------------S---S--S--------------------------------
--S---------S---------SS---------------S-------S--------------------------------
------------------------------------S------------S--S---------------------------
---------------S------------------S------------------------------------S-S------
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-----S----------------------S-------------------------------S---------S------S--
----S-S-S-S-----S-----------------------------S----S-S-------------------S--S---
S--------S------------------------------S--------------------------------S------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_783
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-------------------------------------------TCAAGCACGTACTCCCTCCT-----------------
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>reverse_3090
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-------------------------------------------------GTGAACGGGGTTGATGGAGT-----------
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