Multiple sequence alignment - TraesCS7D01G133000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G133000 chr7D 100.000 2326 0 0 1 2326 84256376 84254051 0.000000e+00 4296.0
1 TraesCS7D01G133000 chr7B 88.595 1438 111 22 2 1404 33903684 33902265 0.000000e+00 1698.0
2 TraesCS7D01G133000 chr7A 82.955 1279 116 54 341 1589 85610579 85609373 0.000000e+00 1061.0
3 TraesCS7D01G133000 chr7A 81.132 212 17 8 72 279 85610862 85610670 5.180000e-32 148.0
4 TraesCS7D01G133000 chr1B 86.645 614 59 10 128 728 325985484 325984881 0.000000e+00 658.0
5 TraesCS7D01G133000 chr2A 87.541 305 29 4 454 752 710523949 710523648 6.150000e-91 344.0
6 TraesCS7D01G133000 chr4A 84.191 272 34 6 1 268 304540555 304540821 2.970000e-64 255.0
7 TraesCS7D01G133000 chr6B 91.111 90 7 1 1674 1763 552501498 552501410 1.130000e-23 121.0
8 TraesCS7D01G133000 chr3D 85.882 85 12 0 1679 1763 20554260 20554176 8.850000e-15 91.6
9 TraesCS7D01G133000 chr2D 93.023 43 3 0 1679 1721 21829396 21829438 1.930000e-06 63.9
10 TraesCS7D01G133000 chr2D 96.875 32 0 1 1741 1772 118366423 118366393 4.000000e-03 52.8
11 TraesCS7D01G133000 chr5B 91.304 46 3 1 1676 1720 249333944 249333989 6.940000e-06 62.1
12 TraesCS7D01G133000 chr1D 89.130 46 5 0 1675 1720 221010318 221010273 8.980000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G133000 chr7D 84254051 84256376 2325 True 4296.0 4296 100.0000 1 2326 1 chr7D.!!$R1 2325
1 TraesCS7D01G133000 chr7B 33902265 33903684 1419 True 1698.0 1698 88.5950 2 1404 1 chr7B.!!$R1 1402
2 TraesCS7D01G133000 chr7A 85609373 85610862 1489 True 604.5 1061 82.0435 72 1589 2 chr7A.!!$R1 1517
3 TraesCS7D01G133000 chr1B 325984881 325985484 603 True 658.0 658 86.6450 128 728 1 chr1B.!!$R1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 525 0.105709 TATGCGATCTGGGGTCTGGA 60.106 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2126 2235 0.036732 TAACACTGCAAGGCTCTGGG 59.963 55.0 0.0 0.0 39.3 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.238701 TGGGGGAAAGAGGGGAAGC 61.239 63.158 0.00 0.00 0.00 3.86
25 26 1.623542 AAAGAGGGGAAGCGCCGTAT 61.624 55.000 2.29 0.00 41.60 3.06
135 138 2.775960 TGCAGATGTGGGATTCAGAGAT 59.224 45.455 0.00 0.00 0.00 2.75
162 165 7.017645 GCATAGTTCAGTTAGAATGTTGTGTG 58.982 38.462 0.00 0.00 38.76 3.82
223 226 4.811024 GCTCCTTTGGGTTTCTTGAAAAAG 59.189 41.667 0.00 0.00 0.00 2.27
224 227 5.395214 GCTCCTTTGGGTTTCTTGAAAAAGA 60.395 40.000 0.00 0.00 0.00 2.52
287 326 2.846827 CCCTATGGAAGTTCAGGAACCT 59.153 50.000 8.90 0.00 42.06 3.50
290 329 1.518367 TGGAAGTTCAGGAACCTGGT 58.482 50.000 18.99 0.00 43.75 4.00
385 437 2.290367 TGGTGAAGCTTTCATGTTGACG 59.710 45.455 0.00 0.00 42.47 4.35
409 467 1.862827 GTGCGGTCTTTGTAGTTCGTT 59.137 47.619 0.00 0.00 0.00 3.85
410 468 1.862201 TGCGGTCTTTGTAGTTCGTTG 59.138 47.619 0.00 0.00 0.00 4.10
411 469 1.398071 GCGGTCTTTGTAGTTCGTTGC 60.398 52.381 0.00 0.00 0.00 4.17
412 470 1.862201 CGGTCTTTGTAGTTCGTTGCA 59.138 47.619 0.00 0.00 0.00 4.08
413 471 2.096909 CGGTCTTTGTAGTTCGTTGCAG 60.097 50.000 0.00 0.00 0.00 4.41
414 472 3.128349 GGTCTTTGTAGTTCGTTGCAGA 58.872 45.455 0.00 0.00 0.00 4.26
415 473 3.059800 GGTCTTTGTAGTTCGTTGCAGAC 60.060 47.826 0.00 0.00 0.00 3.51
416 474 3.802685 GTCTTTGTAGTTCGTTGCAGACT 59.197 43.478 0.00 0.00 0.00 3.24
417 475 4.270325 GTCTTTGTAGTTCGTTGCAGACTT 59.730 41.667 0.00 0.00 0.00 3.01
465 523 1.332195 TCTATGCGATCTGGGGTCTG 58.668 55.000 0.00 0.00 0.00 3.51
467 525 0.105709 TATGCGATCTGGGGTCTGGA 60.106 55.000 0.00 0.00 0.00 3.86
469 527 1.070445 GCGATCTGGGGTCTGGATG 59.930 63.158 0.00 0.00 0.00 3.51
497 555 3.119388 TGATGAAGCTGGCAATTTAGCAC 60.119 43.478 8.35 3.84 42.29 4.40
516 574 2.098117 CACCCTGCTTGCTAATACTTGC 59.902 50.000 0.00 0.00 0.00 4.01
595 653 5.541845 TGCTAGCATGTAACCATACTGATC 58.458 41.667 14.93 0.00 32.98 2.92
597 655 5.636965 GCTAGCATGTAACCATACTGATCTG 59.363 44.000 10.63 0.00 32.98 2.90
705 771 5.552870 AAGAGAAAGAGTAGCAGGTTCAA 57.447 39.130 0.00 0.00 0.00 2.69
712 778 8.103305 AGAAAGAGTAGCAGGTTCAATATTTGA 58.897 33.333 0.00 0.00 38.04 2.69
713 779 8.635765 AAAGAGTAGCAGGTTCAATATTTGAA 57.364 30.769 0.00 0.00 46.68 2.69
778 860 7.231317 AGCAGGATTCAGTTTAAGTTTGATTCA 59.769 33.333 0.00 0.00 0.00 2.57
790 872 4.546570 AGTTTGATTCAAGGCGTAAAAGC 58.453 39.130 0.00 0.00 0.00 3.51
792 874 2.418692 TGATTCAAGGCGTAAAAGCGA 58.581 42.857 0.00 0.00 38.18 4.93
850 932 2.456577 ACGGAAATGGGGAAAATCTGG 58.543 47.619 0.00 0.00 0.00 3.86
868 950 3.076621 CTGGTGAGATGCTTGTTGCTAA 58.923 45.455 0.00 0.00 43.37 3.09
879 967 5.860611 TGCTTGTTGCTAAGTTACCTTCTA 58.139 37.500 0.00 0.00 43.37 2.10
881 969 6.204108 TGCTTGTTGCTAAGTTACCTTCTAAC 59.796 38.462 0.00 0.00 43.37 2.34
962 1050 8.860088 GTGGCATTACCTATCCTGAATTAATTT 58.140 33.333 1.43 0.00 40.22 1.82
963 1051 9.077885 TGGCATTACCTATCCTGAATTAATTTC 57.922 33.333 1.43 0.00 40.22 2.17
1035 1123 0.034896 ACGCCTTAGTTGTCACTGGG 59.965 55.000 0.00 0.00 34.06 4.45
1111 1200 8.964476 AGTGAGTTTGTTTCTCATCTTTCTAA 57.036 30.769 0.00 0.00 42.63 2.10
1126 1215 6.920569 TCTTTCTAACACTGGTTGAGAAAC 57.079 37.500 0.00 0.00 37.88 2.78
1134 1223 5.710984 ACACTGGTTGAGAAACGTAGATAG 58.289 41.667 0.00 0.00 0.00 2.08
1137 1226 5.475909 ACTGGTTGAGAAACGTAGATAGACA 59.524 40.000 0.00 0.00 0.00 3.41
1141 1230 6.472808 GGTTGAGAAACGTAGATAGACATGTC 59.527 42.308 18.47 18.47 0.00 3.06
1158 1247 3.672447 CGTGTGCATTGGCTGGCA 61.672 61.111 0.00 0.00 41.91 4.92
1166 1255 2.004733 GCATTGGCTGGCATTTCTTTC 58.995 47.619 4.22 0.00 36.96 2.62
1220 1310 7.841222 AGGAAATCAAAGAACAGGCCTATTATT 59.159 33.333 3.98 0.00 0.00 1.40
1358 1448 8.702163 TTCCATCTTGTTTTCTCTTTGTTTTC 57.298 30.769 0.00 0.00 0.00 2.29
1359 1449 7.835822 TCCATCTTGTTTTCTCTTTGTTTTCA 58.164 30.769 0.00 0.00 0.00 2.69
1360 1450 7.975616 TCCATCTTGTTTTCTCTTTGTTTTCAG 59.024 33.333 0.00 0.00 0.00 3.02
1361 1451 7.761249 CCATCTTGTTTTCTCTTTGTTTTCAGT 59.239 33.333 0.00 0.00 0.00 3.41
1399 1497 2.084546 GTGAGTGGAACCCTGTAATGC 58.915 52.381 0.00 0.00 37.80 3.56
1402 1500 1.985159 AGTGGAACCCTGTAATGCTGA 59.015 47.619 0.00 0.00 37.80 4.26
1403 1501 2.578021 AGTGGAACCCTGTAATGCTGAT 59.422 45.455 0.00 0.00 37.80 2.90
1404 1502 3.010584 AGTGGAACCCTGTAATGCTGATT 59.989 43.478 0.00 0.00 37.80 2.57
1405 1503 3.763897 GTGGAACCCTGTAATGCTGATTT 59.236 43.478 0.00 0.00 0.00 2.17
1406 1504 4.947388 GTGGAACCCTGTAATGCTGATTTA 59.053 41.667 0.00 0.00 0.00 1.40
1407 1505 5.417580 GTGGAACCCTGTAATGCTGATTTAA 59.582 40.000 0.00 0.00 0.00 1.52
1408 1506 6.096846 GTGGAACCCTGTAATGCTGATTTAAT 59.903 38.462 0.00 0.00 0.00 1.40
1409 1507 7.284489 GTGGAACCCTGTAATGCTGATTTAATA 59.716 37.037 0.00 0.00 0.00 0.98
1410 1508 7.502226 TGGAACCCTGTAATGCTGATTTAATAG 59.498 37.037 0.00 0.00 0.00 1.73
1411 1509 6.884280 ACCCTGTAATGCTGATTTAATAGC 57.116 37.500 0.00 0.00 40.29 2.97
1412 1510 5.470098 ACCCTGTAATGCTGATTTAATAGCG 59.530 40.000 0.00 0.00 42.74 4.26
1413 1511 5.700832 CCCTGTAATGCTGATTTAATAGCGA 59.299 40.000 0.00 0.00 42.74 4.93
1414 1512 6.128445 CCCTGTAATGCTGATTTAATAGCGAG 60.128 42.308 0.00 0.00 42.74 5.03
1415 1513 6.128445 CCTGTAATGCTGATTTAATAGCGAGG 60.128 42.308 0.00 0.00 42.74 4.63
1416 1514 6.288294 TGTAATGCTGATTTAATAGCGAGGT 58.712 36.000 0.00 0.00 42.74 3.85
1417 1515 5.679734 AATGCTGATTTAATAGCGAGGTG 57.320 39.130 0.00 0.00 42.74 4.00
1418 1516 3.466836 TGCTGATTTAATAGCGAGGTGG 58.533 45.455 0.00 0.00 42.74 4.61
1419 1517 3.118408 TGCTGATTTAATAGCGAGGTGGT 60.118 43.478 0.00 0.00 42.74 4.16
1420 1518 3.248602 GCTGATTTAATAGCGAGGTGGTG 59.751 47.826 0.00 0.00 0.00 4.17
1425 1523 7.450074 TGATTTAATAGCGAGGTGGTGATAAT 58.550 34.615 0.00 0.00 0.00 1.28
1438 1536 1.457303 GTGATAATCGGCTCGTGATGC 59.543 52.381 0.00 0.00 0.00 3.91
1449 1547 4.465512 GTGATGCTGGGCAACGCG 62.466 66.667 3.53 3.53 43.62 6.01
1474 1575 2.729156 GCAGTGCATTAGCTTCGGTTTC 60.729 50.000 11.09 0.00 42.74 2.78
1491 1600 3.189287 GGTTTCAGGTGTTATGTGCAGAG 59.811 47.826 0.00 0.00 0.00 3.35
1508 1617 2.096565 CAGAGCACATGCATATGTACGC 60.097 50.000 6.86 0.94 45.53 4.42
1517 1626 3.855858 TGCATATGTACGCAGTTCTTCA 58.144 40.909 4.29 0.00 37.78 3.02
1522 1631 6.293081 GCATATGTACGCAGTTCTTCATGAAT 60.293 38.462 8.96 0.00 37.78 2.57
1527 1636 5.536554 ACGCAGTTCTTCATGAATTGTAG 57.463 39.130 8.96 0.00 37.78 2.74
1530 1639 4.397417 GCAGTTCTTCATGAATTGTAGGCT 59.603 41.667 8.96 0.00 42.24 4.58
1540 1649 5.801350 TGAATTGTAGGCTCTTTTGATCG 57.199 39.130 0.00 0.00 0.00 3.69
1545 1654 4.000988 TGTAGGCTCTTTTGATCGTTTCC 58.999 43.478 0.00 0.00 0.00 3.13
1559 1668 1.230324 GTTTCCTGTGCTCCAGTGAC 58.770 55.000 0.00 0.00 39.74 3.67
1568 1677 3.055819 TGTGCTCCAGTGACTATTCCTTC 60.056 47.826 0.00 0.00 0.00 3.46
1576 1685 3.008049 AGTGACTATTCCTTCCAAAGCGT 59.992 43.478 0.00 0.00 0.00 5.07
1635 1744 1.294857 AAATGTTGGGTTTGCGTTGC 58.705 45.000 0.00 0.00 0.00 4.17
1636 1745 0.463620 AATGTTGGGTTTGCGTTGCT 59.536 45.000 0.00 0.00 0.00 3.91
1637 1746 0.249405 ATGTTGGGTTTGCGTTGCTG 60.249 50.000 0.00 0.00 0.00 4.41
1638 1747 1.315981 TGTTGGGTTTGCGTTGCTGA 61.316 50.000 0.00 0.00 0.00 4.26
1639 1748 0.179124 GTTGGGTTTGCGTTGCTGAA 60.179 50.000 0.00 0.00 0.00 3.02
1640 1749 0.102120 TTGGGTTTGCGTTGCTGAAG 59.898 50.000 0.00 0.00 0.00 3.02
1641 1750 1.007387 GGGTTTGCGTTGCTGAAGG 60.007 57.895 0.00 0.00 0.00 3.46
1642 1751 1.733526 GGTTTGCGTTGCTGAAGGT 59.266 52.632 0.00 0.00 0.00 3.50
1643 1752 0.594796 GGTTTGCGTTGCTGAAGGTG 60.595 55.000 0.00 0.00 0.00 4.00
1644 1753 0.100503 GTTTGCGTTGCTGAAGGTGT 59.899 50.000 0.00 0.00 0.00 4.16
1645 1754 0.100325 TTTGCGTTGCTGAAGGTGTG 59.900 50.000 0.00 0.00 0.00 3.82
1646 1755 0.746204 TTGCGTTGCTGAAGGTGTGA 60.746 50.000 0.00 0.00 0.00 3.58
1647 1756 1.159713 TGCGTTGCTGAAGGTGTGAG 61.160 55.000 0.00 0.00 0.00 3.51
1648 1757 1.845809 GCGTTGCTGAAGGTGTGAGG 61.846 60.000 0.00 0.00 0.00 3.86
1649 1758 1.845809 CGTTGCTGAAGGTGTGAGGC 61.846 60.000 0.00 0.00 0.00 4.70
1650 1759 1.228245 TTGCTGAAGGTGTGAGGCC 60.228 57.895 0.00 0.00 0.00 5.19
1651 1760 1.993701 TTGCTGAAGGTGTGAGGCCA 61.994 55.000 5.01 0.00 0.00 5.36
1652 1761 1.001641 GCTGAAGGTGTGAGGCCAT 60.002 57.895 5.01 0.00 0.00 4.40
1653 1762 0.253044 GCTGAAGGTGTGAGGCCATA 59.747 55.000 5.01 0.00 0.00 2.74
1654 1763 1.340017 GCTGAAGGTGTGAGGCCATAA 60.340 52.381 5.01 0.00 0.00 1.90
1655 1764 2.879756 GCTGAAGGTGTGAGGCCATAAA 60.880 50.000 5.01 0.00 0.00 1.40
1656 1765 3.624777 CTGAAGGTGTGAGGCCATAAAT 58.375 45.455 5.01 0.00 0.00 1.40
1657 1766 3.355378 TGAAGGTGTGAGGCCATAAATG 58.645 45.455 5.01 0.00 0.00 2.32
1658 1767 3.010027 TGAAGGTGTGAGGCCATAAATGA 59.990 43.478 5.01 0.00 0.00 2.57
1659 1768 3.959495 AGGTGTGAGGCCATAAATGAT 57.041 42.857 5.01 0.00 0.00 2.45
1660 1769 5.104151 TGAAGGTGTGAGGCCATAAATGATA 60.104 40.000 5.01 0.00 0.00 2.15
1661 1770 4.718961 AGGTGTGAGGCCATAAATGATAC 58.281 43.478 5.01 0.00 0.00 2.24
1662 1771 4.413520 AGGTGTGAGGCCATAAATGATACT 59.586 41.667 5.01 0.00 0.00 2.12
1663 1772 4.757149 GGTGTGAGGCCATAAATGATACTC 59.243 45.833 5.01 0.00 0.00 2.59
1664 1773 4.757149 GTGTGAGGCCATAAATGATACTCC 59.243 45.833 5.01 0.00 0.00 3.85
1665 1774 4.202461 TGTGAGGCCATAAATGATACTCCC 60.202 45.833 5.01 0.00 0.00 4.30
1666 1775 4.042187 GTGAGGCCATAAATGATACTCCCT 59.958 45.833 5.01 0.00 0.00 4.20
1667 1776 4.287067 TGAGGCCATAAATGATACTCCCTC 59.713 45.833 5.01 0.00 37.45 4.30
1668 1777 3.589288 AGGCCATAAATGATACTCCCTCC 59.411 47.826 5.01 0.00 0.00 4.30
1669 1778 3.589288 GGCCATAAATGATACTCCCTCCT 59.411 47.826 0.00 0.00 0.00 3.69
1670 1779 4.043435 GGCCATAAATGATACTCCCTCCTT 59.957 45.833 0.00 0.00 0.00 3.36
1671 1780 5.458215 GGCCATAAATGATACTCCCTCCTTT 60.458 44.000 0.00 0.00 0.00 3.11
1672 1781 6.071320 GCCATAAATGATACTCCCTCCTTTT 58.929 40.000 0.00 0.00 0.00 2.27
1673 1782 6.207614 GCCATAAATGATACTCCCTCCTTTTC 59.792 42.308 0.00 0.00 0.00 2.29
1674 1783 7.290061 CCATAAATGATACTCCCTCCTTTTCA 58.710 38.462 0.00 0.00 0.00 2.69
1675 1784 7.946776 CCATAAATGATACTCCCTCCTTTTCAT 59.053 37.037 0.00 0.00 0.00 2.57
1678 1787 7.698163 AATGATACTCCCTCCTTTTCATACT 57.302 36.000 0.00 0.00 0.00 2.12
1679 1788 8.798975 AATGATACTCCCTCCTTTTCATACTA 57.201 34.615 0.00 0.00 0.00 1.82
1680 1789 7.598759 TGATACTCCCTCCTTTTCATACTAC 57.401 40.000 0.00 0.00 0.00 2.73
1681 1790 7.363031 TGATACTCCCTCCTTTTCATACTACT 58.637 38.462 0.00 0.00 0.00 2.57
1682 1791 7.506261 TGATACTCCCTCCTTTTCATACTACTC 59.494 40.741 0.00 0.00 0.00 2.59
1683 1792 4.963628 ACTCCCTCCTTTTCATACTACTCC 59.036 45.833 0.00 0.00 0.00 3.85
1684 1793 4.296056 TCCCTCCTTTTCATACTACTCCC 58.704 47.826 0.00 0.00 0.00 4.30
1685 1794 4.015541 TCCCTCCTTTTCATACTACTCCCT 60.016 45.833 0.00 0.00 0.00 4.20
1686 1795 4.345547 CCCTCCTTTTCATACTACTCCCTC 59.654 50.000 0.00 0.00 0.00 4.30
1687 1796 4.345547 CCTCCTTTTCATACTACTCCCTCC 59.654 50.000 0.00 0.00 0.00 4.30
1688 1797 5.212745 CTCCTTTTCATACTACTCCCTCCT 58.787 45.833 0.00 0.00 0.00 3.69
1689 1798 5.600749 TCCTTTTCATACTACTCCCTCCTT 58.399 41.667 0.00 0.00 0.00 3.36
1690 1799 6.030082 TCCTTTTCATACTACTCCCTCCTTT 58.970 40.000 0.00 0.00 0.00 3.11
1691 1800 6.504279 TCCTTTTCATACTACTCCCTCCTTTT 59.496 38.462 0.00 0.00 0.00 2.27
1692 1801 6.824196 CCTTTTCATACTACTCCCTCCTTTTC 59.176 42.308 0.00 0.00 0.00 2.29
1693 1802 7.311360 CCTTTTCATACTACTCCCTCCTTTTCT 60.311 40.741 0.00 0.00 0.00 2.52
1694 1803 8.674925 TTTTCATACTACTCCCTCCTTTTCTA 57.325 34.615 0.00 0.00 0.00 2.10
1695 1804 8.674925 TTTCATACTACTCCCTCCTTTTCTAA 57.325 34.615 0.00 0.00 0.00 2.10
1696 1805 8.674925 TTCATACTACTCCCTCCTTTTCTAAA 57.325 34.615 0.00 0.00 0.00 1.85
1697 1806 8.855804 TCATACTACTCCCTCCTTTTCTAAAT 57.144 34.615 0.00 0.00 0.00 1.40
1698 1807 9.947189 TCATACTACTCCCTCCTTTTCTAAATA 57.053 33.333 0.00 0.00 0.00 1.40
1724 1833 7.581213 ATGATGTTTTGGTAGTTCAAACTGA 57.419 32.000 5.66 0.00 40.07 3.41
1725 1834 7.397892 TGATGTTTTGGTAGTTCAAACTGAA 57.602 32.000 5.66 0.00 40.07 3.02
1739 1848 5.969741 TCAAACTGAACTATCAAAACGTCG 58.030 37.500 0.00 0.00 34.49 5.12
1740 1849 5.521010 TCAAACTGAACTATCAAAACGTCGT 59.479 36.000 0.00 0.00 34.49 4.34
1741 1850 6.696583 TCAAACTGAACTATCAAAACGTCGTA 59.303 34.615 0.00 0.00 34.49 3.43
1742 1851 6.443876 AACTGAACTATCAAAACGTCGTAC 57.556 37.500 0.00 0.00 34.49 3.67
1743 1852 5.522456 ACTGAACTATCAAAACGTCGTACA 58.478 37.500 0.00 0.00 34.49 2.90
1744 1853 6.154445 ACTGAACTATCAAAACGTCGTACAT 58.846 36.000 0.00 0.00 34.49 2.29
1745 1854 6.643770 ACTGAACTATCAAAACGTCGTACATT 59.356 34.615 0.00 0.00 34.49 2.71
1746 1855 7.170320 ACTGAACTATCAAAACGTCGTACATTT 59.830 33.333 0.00 0.00 34.49 2.32
1747 1856 8.518151 TGAACTATCAAAACGTCGTACATTTA 57.482 30.769 0.00 0.00 30.99 1.40
1748 1857 8.641155 TGAACTATCAAAACGTCGTACATTTAG 58.359 33.333 0.00 1.02 30.99 1.85
1749 1858 7.515957 ACTATCAAAACGTCGTACATTTAGG 57.484 36.000 0.00 0.00 0.00 2.69
1750 1859 7.315142 ACTATCAAAACGTCGTACATTTAGGA 58.685 34.615 0.00 0.00 0.00 2.94
1751 1860 7.814107 ACTATCAAAACGTCGTACATTTAGGAA 59.186 33.333 0.00 0.00 0.00 3.36
1752 1861 7.605410 ATCAAAACGTCGTACATTTAGGAAT 57.395 32.000 0.00 0.00 0.00 3.01
1753 1862 6.823531 TCAAAACGTCGTACATTTAGGAATG 58.176 36.000 0.00 0.00 46.47 2.67
1754 1863 5.789710 AAACGTCGTACATTTAGGAATGG 57.210 39.130 0.00 0.00 45.56 3.16
1755 1864 4.724074 ACGTCGTACATTTAGGAATGGA 57.276 40.909 0.00 0.00 45.56 3.41
1756 1865 4.679662 ACGTCGTACATTTAGGAATGGAG 58.320 43.478 0.00 0.00 45.56 3.86
1757 1866 4.049186 CGTCGTACATTTAGGAATGGAGG 58.951 47.826 4.39 1.68 45.56 4.30
1758 1867 4.377897 GTCGTACATTTAGGAATGGAGGG 58.622 47.826 4.39 0.00 45.56 4.30
1759 1868 4.100498 GTCGTACATTTAGGAATGGAGGGA 59.900 45.833 4.39 0.00 45.56 4.20
1760 1869 4.344102 TCGTACATTTAGGAATGGAGGGAG 59.656 45.833 4.39 0.00 45.56 4.30
1761 1870 4.101119 CGTACATTTAGGAATGGAGGGAGT 59.899 45.833 4.39 0.00 45.56 3.85
1762 1871 5.303589 CGTACATTTAGGAATGGAGGGAGTA 59.696 44.000 4.39 0.00 45.56 2.59
1763 1872 6.014499 CGTACATTTAGGAATGGAGGGAGTAT 60.014 42.308 4.39 0.00 45.56 2.12
1764 1873 7.177921 CGTACATTTAGGAATGGAGGGAGTATA 59.822 40.741 4.39 0.00 45.56 1.47
1765 1874 9.047947 GTACATTTAGGAATGGAGGGAGTATAT 57.952 37.037 4.39 0.00 45.56 0.86
1766 1875 8.525729 ACATTTAGGAATGGAGGGAGTATATT 57.474 34.615 4.39 0.00 45.56 1.28
1767 1876 9.629649 ACATTTAGGAATGGAGGGAGTATATTA 57.370 33.333 4.39 0.00 45.56 0.98
1773 1882 8.322091 AGGAATGGAGGGAGTATATTAATTTCG 58.678 37.037 0.00 0.00 0.00 3.46
1774 1883 8.101419 GGAATGGAGGGAGTATATTAATTTCGT 58.899 37.037 0.00 0.00 0.00 3.85
1797 1906 8.965172 TCGTATTAATTCGAACTTTATGAGAGC 58.035 33.333 13.89 0.00 33.13 4.09
1798 1907 8.215132 CGTATTAATTCGAACTTTATGAGAGCC 58.785 37.037 8.63 0.00 0.00 4.70
1799 1908 9.042008 GTATTAATTCGAACTTTATGAGAGCCA 57.958 33.333 0.00 0.00 0.00 4.75
1800 1909 7.915293 TTAATTCGAACTTTATGAGAGCCAA 57.085 32.000 0.00 0.00 0.00 4.52
1801 1910 8.506168 TTAATTCGAACTTTATGAGAGCCAAT 57.494 30.769 0.00 0.00 0.00 3.16
1802 1911 7.396540 AATTCGAACTTTATGAGAGCCAATT 57.603 32.000 0.00 0.00 0.00 2.32
1803 1912 6.817765 TTCGAACTTTATGAGAGCCAATTT 57.182 33.333 0.00 0.00 0.00 1.82
1804 1913 6.422776 TCGAACTTTATGAGAGCCAATTTC 57.577 37.500 0.00 0.00 0.00 2.17
1805 1914 6.173339 TCGAACTTTATGAGAGCCAATTTCT 58.827 36.000 0.00 0.00 0.00 2.52
1806 1915 7.327975 TCGAACTTTATGAGAGCCAATTTCTA 58.672 34.615 0.00 0.00 0.00 2.10
1807 1916 7.492669 TCGAACTTTATGAGAGCCAATTTCTAG 59.507 37.037 0.00 0.00 0.00 2.43
1808 1917 7.492669 CGAACTTTATGAGAGCCAATTTCTAGA 59.507 37.037 0.00 0.00 0.00 2.43
1809 1918 9.167311 GAACTTTATGAGAGCCAATTTCTAGAA 57.833 33.333 0.00 0.00 0.00 2.10
1810 1919 9.520515 AACTTTATGAGAGCCAATTTCTAGAAA 57.479 29.630 19.83 19.83 34.46 2.52
1811 1920 9.520515 ACTTTATGAGAGCCAATTTCTAGAAAA 57.479 29.630 21.26 5.97 33.56 2.29
1901 2010 8.964420 AAAAATGTTCCACAACGTATCTAATG 57.036 30.769 0.00 0.00 34.95 1.90
1902 2011 7.915293 AAATGTTCCACAACGTATCTAATGA 57.085 32.000 0.00 0.00 34.95 2.57
1903 2012 8.506168 AAATGTTCCACAACGTATCTAATGAT 57.494 30.769 0.00 0.00 34.95 2.45
1904 2013 9.607988 AAATGTTCCACAACGTATCTAATGATA 57.392 29.630 0.00 0.00 34.95 2.15
1905 2014 9.778741 AATGTTCCACAACGTATCTAATGATAT 57.221 29.630 0.00 0.00 37.48 1.63
1906 2015 9.778741 ATGTTCCACAACGTATCTAATGATATT 57.221 29.630 0.00 0.00 37.48 1.28
1907 2016 9.607988 TGTTCCACAACGTATCTAATGATATTT 57.392 29.630 0.00 0.00 37.48 1.40
1911 2020 9.663904 CCACAACGTATCTAATGATATTTTTGG 57.336 33.333 0.00 0.00 37.48 3.28
1930 2039 9.612066 ATTTTTGGTATTGTGAATGTTGTTTCT 57.388 25.926 0.00 0.00 0.00 2.52
1931 2040 9.442047 TTTTTGGTATTGTGAATGTTGTTTCTT 57.558 25.926 0.00 0.00 0.00 2.52
1932 2041 9.442047 TTTTGGTATTGTGAATGTTGTTTCTTT 57.558 25.926 0.00 0.00 0.00 2.52
1940 2049 9.796120 TTGTGAATGTTGTTTCTTTAAACCTAG 57.204 29.630 0.00 0.00 43.66 3.02
1941 2050 8.962679 TGTGAATGTTGTTTCTTTAAACCTAGT 58.037 29.630 0.00 0.00 43.66 2.57
1942 2051 9.447040 GTGAATGTTGTTTCTTTAAACCTAGTC 57.553 33.333 0.00 0.00 43.66 2.59
1943 2052 9.179909 TGAATGTTGTTTCTTTAAACCTAGTCA 57.820 29.630 0.00 0.00 43.66 3.41
1946 2055 9.797556 ATGTTGTTTCTTTAAACCTAGTCAAAC 57.202 29.630 0.00 0.00 43.66 2.93
1947 2056 9.016438 TGTTGTTTCTTTAAACCTAGTCAAACT 57.984 29.630 0.00 0.00 43.66 2.66
1948 2057 9.850628 GTTGTTTCTTTAAACCTAGTCAAACTT 57.149 29.630 0.00 0.00 43.66 2.66
1950 2059 9.233649 TGTTTCTTTAAACCTAGTCAAACTTCA 57.766 29.630 0.00 0.00 43.66 3.02
1951 2060 9.499585 GTTTCTTTAAACCTAGTCAAACTTCAC 57.500 33.333 0.00 0.00 39.29 3.18
1952 2061 9.457436 TTTCTTTAAACCTAGTCAAACTTCACT 57.543 29.630 0.00 0.00 0.00 3.41
1960 2069 8.974060 ACCTAGTCAAACTTCACTAATTTTGA 57.026 30.769 0.00 0.00 40.14 2.69
1961 2070 9.403583 ACCTAGTCAAACTTCACTAATTTTGAA 57.596 29.630 5.54 3.04 42.43 2.69
1962 2071 9.665264 CCTAGTCAAACTTCACTAATTTTGAAC 57.335 33.333 5.54 2.45 42.43 3.18
1966 2075 9.997482 GTCAAACTTCACTAATTTTGAACTACA 57.003 29.630 5.54 0.00 42.43 2.74
2003 2112 8.585471 ATGTGAAAATATGAAACAGATGGAGT 57.415 30.769 0.00 0.00 0.00 3.85
2004 2113 9.685276 ATGTGAAAATATGAAACAGATGGAGTA 57.315 29.630 0.00 0.00 0.00 2.59
2005 2114 8.946085 TGTGAAAATATGAAACAGATGGAGTAC 58.054 33.333 0.00 0.00 0.00 2.73
2006 2115 8.116753 GTGAAAATATGAAACAGATGGAGTACG 58.883 37.037 0.00 0.00 0.00 3.67
2007 2116 7.279981 TGAAAATATGAAACAGATGGAGTACGG 59.720 37.037 0.00 0.00 0.00 4.02
2008 2117 5.871396 ATATGAAACAGATGGAGTACGGT 57.129 39.130 0.00 0.00 0.00 4.83
2009 2118 6.971726 ATATGAAACAGATGGAGTACGGTA 57.028 37.500 0.00 0.00 0.00 4.02
2010 2119 5.670792 ATGAAACAGATGGAGTACGGTAA 57.329 39.130 0.00 0.00 0.00 2.85
2011 2120 5.471556 TGAAACAGATGGAGTACGGTAAA 57.528 39.130 0.00 0.00 0.00 2.01
2012 2121 5.856156 TGAAACAGATGGAGTACGGTAAAA 58.144 37.500 0.00 0.00 0.00 1.52
2013 2122 6.289834 TGAAACAGATGGAGTACGGTAAAAA 58.710 36.000 0.00 0.00 0.00 1.94
2014 2123 6.425721 TGAAACAGATGGAGTACGGTAAAAAG 59.574 38.462 0.00 0.00 0.00 2.27
2015 2124 5.479124 ACAGATGGAGTACGGTAAAAAGT 57.521 39.130 0.00 0.00 0.00 2.66
2016 2125 6.594788 ACAGATGGAGTACGGTAAAAAGTA 57.405 37.500 0.00 0.00 0.00 2.24
2017 2126 6.996509 ACAGATGGAGTACGGTAAAAAGTAA 58.003 36.000 0.00 0.00 0.00 2.24
2018 2127 7.444299 ACAGATGGAGTACGGTAAAAAGTAAA 58.556 34.615 0.00 0.00 0.00 2.01
2019 2128 7.933033 ACAGATGGAGTACGGTAAAAAGTAAAA 59.067 33.333 0.00 0.00 0.00 1.52
2020 2129 8.943002 CAGATGGAGTACGGTAAAAAGTAAAAT 58.057 33.333 0.00 0.00 0.00 1.82
2021 2130 8.943002 AGATGGAGTACGGTAAAAAGTAAAATG 58.057 33.333 0.00 0.00 0.00 2.32
2022 2131 8.851541 ATGGAGTACGGTAAAAAGTAAAATGA 57.148 30.769 0.00 0.00 0.00 2.57
2023 2132 8.851541 TGGAGTACGGTAAAAAGTAAAATGAT 57.148 30.769 0.00 0.00 0.00 2.45
2024 2133 8.938906 TGGAGTACGGTAAAAAGTAAAATGATC 58.061 33.333 0.00 0.00 0.00 2.92
2025 2134 8.938906 GGAGTACGGTAAAAAGTAAAATGATCA 58.061 33.333 0.00 0.00 0.00 2.92
2048 2157 9.965902 ATCATAATCAAGACTAAGAAGGTTTGT 57.034 29.630 0.00 0.00 0.00 2.83
2049 2158 9.793259 TCATAATCAAGACTAAGAAGGTTTGTT 57.207 29.630 0.00 0.00 0.00 2.83
2053 2162 8.974060 ATCAAGACTAAGAAGGTTTGTTAACA 57.026 30.769 3.59 3.59 35.92 2.41
2054 2163 8.433421 TCAAGACTAAGAAGGTTTGTTAACAG 57.567 34.615 8.56 0.00 35.92 3.16
2055 2164 8.044908 TCAAGACTAAGAAGGTTTGTTAACAGT 58.955 33.333 8.56 0.00 35.92 3.55
2056 2165 9.321562 CAAGACTAAGAAGGTTTGTTAACAGTA 57.678 33.333 8.56 0.00 35.92 2.74
2057 2166 8.883954 AGACTAAGAAGGTTTGTTAACAGTAC 57.116 34.615 8.56 10.75 35.92 2.73
2058 2167 8.702819 AGACTAAGAAGGTTTGTTAACAGTACT 58.297 33.333 8.56 5.41 35.92 2.73
2059 2168 9.971922 GACTAAGAAGGTTTGTTAACAGTACTA 57.028 33.333 8.56 0.00 35.92 1.82
2068 2177 8.748582 GGTTTGTTAACAGTACTATTTTGTTGC 58.251 33.333 8.56 0.00 36.52 4.17
2069 2178 9.511144 GTTTGTTAACAGTACTATTTTGTTGCT 57.489 29.630 8.56 0.00 36.52 3.91
2070 2179 9.724839 TTTGTTAACAGTACTATTTTGTTGCTC 57.275 29.630 8.56 0.00 36.52 4.26
2071 2180 8.671384 TGTTAACAGTACTATTTTGTTGCTCT 57.329 30.769 3.59 0.00 36.52 4.09
2072 2181 9.116067 TGTTAACAGTACTATTTTGTTGCTCTT 57.884 29.630 3.59 0.00 36.52 2.85
2105 2214 7.533289 TTTCTTAATTTAGTTTGGACAGGGG 57.467 36.000 0.00 0.00 0.00 4.79
2106 2215 6.457159 TCTTAATTTAGTTTGGACAGGGGA 57.543 37.500 0.00 0.00 0.00 4.81
2107 2216 6.481643 TCTTAATTTAGTTTGGACAGGGGAG 58.518 40.000 0.00 0.00 0.00 4.30
2108 2217 2.579410 TTTAGTTTGGACAGGGGAGC 57.421 50.000 0.00 0.00 0.00 4.70
2109 2218 1.742308 TTAGTTTGGACAGGGGAGCT 58.258 50.000 0.00 0.00 0.00 4.09
2110 2219 2.634639 TAGTTTGGACAGGGGAGCTA 57.365 50.000 0.00 0.00 0.00 3.32
2111 2220 1.280457 AGTTTGGACAGGGGAGCTAG 58.720 55.000 0.00 0.00 0.00 3.42
2112 2221 0.253327 GTTTGGACAGGGGAGCTAGG 59.747 60.000 0.00 0.00 0.00 3.02
2113 2222 0.178873 TTTGGACAGGGGAGCTAGGT 60.179 55.000 0.00 0.00 0.00 3.08
2114 2223 0.178873 TTGGACAGGGGAGCTAGGTT 60.179 55.000 0.00 0.00 0.00 3.50
2115 2224 0.178873 TGGACAGGGGAGCTAGGTTT 60.179 55.000 0.00 0.00 0.00 3.27
2116 2225 0.992695 GGACAGGGGAGCTAGGTTTT 59.007 55.000 0.00 0.00 0.00 2.43
2117 2226 2.193993 GGACAGGGGAGCTAGGTTTTA 58.806 52.381 0.00 0.00 0.00 1.52
2118 2227 2.093075 GGACAGGGGAGCTAGGTTTTAC 60.093 54.545 0.00 0.00 0.00 2.01
2119 2228 2.570302 GACAGGGGAGCTAGGTTTTACA 59.430 50.000 0.00 0.00 0.00 2.41
2120 2229 2.305052 ACAGGGGAGCTAGGTTTTACAC 59.695 50.000 0.00 0.00 0.00 2.90
2121 2230 2.572104 CAGGGGAGCTAGGTTTTACACT 59.428 50.000 0.00 0.00 0.00 3.55
2122 2231 2.572104 AGGGGAGCTAGGTTTTACACTG 59.428 50.000 0.00 0.00 0.00 3.66
2123 2232 2.570302 GGGGAGCTAGGTTTTACACTGA 59.430 50.000 0.00 0.00 0.00 3.41
2124 2233 3.200165 GGGGAGCTAGGTTTTACACTGAT 59.800 47.826 0.00 0.00 0.00 2.90
2125 2234 4.192317 GGGAGCTAGGTTTTACACTGATG 58.808 47.826 0.00 0.00 0.00 3.07
2126 2235 3.623510 GGAGCTAGGTTTTACACTGATGC 59.376 47.826 0.00 0.00 0.00 3.91
2127 2236 3.610911 AGCTAGGTTTTACACTGATGCC 58.389 45.455 0.00 0.00 0.00 4.40
2128 2237 2.683362 GCTAGGTTTTACACTGATGCCC 59.317 50.000 0.00 0.00 0.00 5.36
2129 2238 2.969821 AGGTTTTACACTGATGCCCA 57.030 45.000 0.00 0.00 0.00 5.36
2131 2240 2.375174 AGGTTTTACACTGATGCCCAGA 59.625 45.455 9.80 0.00 45.78 3.86
2132 2241 2.749621 GGTTTTACACTGATGCCCAGAG 59.250 50.000 9.80 4.95 45.78 3.35
2133 2242 2.113860 TTTACACTGATGCCCAGAGC 57.886 50.000 9.80 0.00 45.78 4.09
2134 2243 0.253044 TTACACTGATGCCCAGAGCC 59.747 55.000 9.80 0.00 45.78 4.70
2135 2244 0.618680 TACACTGATGCCCAGAGCCT 60.619 55.000 9.80 0.00 45.78 4.58
2136 2245 1.302285 CACTGATGCCCAGAGCCTT 59.698 57.895 9.80 0.00 45.78 4.35
2137 2246 1.030488 CACTGATGCCCAGAGCCTTG 61.030 60.000 9.80 0.00 45.78 3.61
2138 2247 2.044650 TGATGCCCAGAGCCTTGC 60.045 61.111 0.00 0.00 42.71 4.01
2139 2248 2.044650 GATGCCCAGAGCCTTGCA 60.045 61.111 0.00 0.00 42.71 4.08
2140 2249 2.044252 ATGCCCAGAGCCTTGCAG 60.044 61.111 0.00 0.00 42.71 4.41
2141 2250 2.833604 GATGCCCAGAGCCTTGCAGT 62.834 60.000 0.00 0.00 42.71 4.40
2142 2251 3.060615 GCCCAGAGCCTTGCAGTG 61.061 66.667 0.00 0.00 34.35 3.66
2143 2252 2.433446 CCCAGAGCCTTGCAGTGT 59.567 61.111 0.00 0.00 0.00 3.55
2144 2253 1.228367 CCCAGAGCCTTGCAGTGTT 60.228 57.895 0.00 0.00 0.00 3.32
2145 2254 0.036732 CCCAGAGCCTTGCAGTGTTA 59.963 55.000 0.00 0.00 0.00 2.41
2146 2255 1.340405 CCCAGAGCCTTGCAGTGTTAT 60.340 52.381 0.00 0.00 0.00 1.89
2147 2256 2.012673 CCAGAGCCTTGCAGTGTTATC 58.987 52.381 0.00 0.00 0.00 1.75
2148 2257 2.012673 CAGAGCCTTGCAGTGTTATCC 58.987 52.381 0.00 0.00 0.00 2.59
2149 2258 1.630369 AGAGCCTTGCAGTGTTATCCA 59.370 47.619 0.00 0.00 0.00 3.41
2150 2259 2.040278 AGAGCCTTGCAGTGTTATCCAA 59.960 45.455 0.00 0.00 0.00 3.53
2151 2260 3.019564 GAGCCTTGCAGTGTTATCCAAT 58.980 45.455 0.00 0.00 0.00 3.16
2152 2261 2.756760 AGCCTTGCAGTGTTATCCAATG 59.243 45.455 0.00 0.00 41.99 2.82
2153 2262 2.754552 GCCTTGCAGTGTTATCCAATGA 59.245 45.455 0.00 0.00 41.63 2.57
2154 2263 3.193267 GCCTTGCAGTGTTATCCAATGAA 59.807 43.478 0.00 0.00 41.63 2.57
2155 2264 4.142093 GCCTTGCAGTGTTATCCAATGAAT 60.142 41.667 0.00 0.00 41.63 2.57
2156 2265 5.585390 CCTTGCAGTGTTATCCAATGAATC 58.415 41.667 0.00 0.00 41.63 2.52
2157 2266 5.125900 CCTTGCAGTGTTATCCAATGAATCA 59.874 40.000 0.00 0.00 41.63 2.57
2158 2267 6.350361 CCTTGCAGTGTTATCCAATGAATCAA 60.350 38.462 0.00 0.00 41.63 2.57
2159 2268 6.198650 TGCAGTGTTATCCAATGAATCAAG 57.801 37.500 0.00 0.00 41.63 3.02
2160 2269 5.125900 TGCAGTGTTATCCAATGAATCAAGG 59.874 40.000 0.00 0.00 41.63 3.61
2161 2270 5.126061 GCAGTGTTATCCAATGAATCAAGGT 59.874 40.000 5.25 0.00 41.63 3.50
2162 2271 6.350445 GCAGTGTTATCCAATGAATCAAGGTT 60.350 38.462 5.25 0.79 41.63 3.50
2163 2272 7.148086 GCAGTGTTATCCAATGAATCAAGGTTA 60.148 37.037 5.25 0.00 41.63 2.85
2164 2273 8.400947 CAGTGTTATCCAATGAATCAAGGTTAG 58.599 37.037 5.25 0.00 41.63 2.34
2165 2274 8.328758 AGTGTTATCCAATGAATCAAGGTTAGA 58.671 33.333 5.25 0.00 0.00 2.10
2166 2275 8.956426 GTGTTATCCAATGAATCAAGGTTAGAA 58.044 33.333 5.25 0.00 0.00 2.10
2167 2276 8.956426 TGTTATCCAATGAATCAAGGTTAGAAC 58.044 33.333 5.25 2.63 0.00 3.01
2168 2277 8.956426 GTTATCCAATGAATCAAGGTTAGAACA 58.044 33.333 5.25 0.00 0.00 3.18
2169 2278 9.527157 TTATCCAATGAATCAAGGTTAGAACAA 57.473 29.630 5.25 0.00 0.00 2.83
2170 2279 7.214467 TCCAATGAATCAAGGTTAGAACAAC 57.786 36.000 5.25 0.00 0.00 3.32
2171 2280 6.208599 TCCAATGAATCAAGGTTAGAACAACC 59.791 38.462 5.25 0.00 40.58 3.77
2172 2281 6.389906 CAATGAATCAAGGTTAGAACAACCC 58.610 40.000 2.58 0.00 41.18 4.11
2173 2282 4.403734 TGAATCAAGGTTAGAACAACCCC 58.596 43.478 2.58 0.00 41.18 4.95
2174 2283 4.141135 TGAATCAAGGTTAGAACAACCCCA 60.141 41.667 2.58 0.00 41.18 4.96
2175 2284 3.502123 TCAAGGTTAGAACAACCCCAG 57.498 47.619 2.58 0.00 41.18 4.45
2176 2285 1.886542 CAAGGTTAGAACAACCCCAGC 59.113 52.381 2.58 0.00 41.18 4.85
2177 2286 1.446016 AGGTTAGAACAACCCCAGCT 58.554 50.000 2.58 0.00 41.18 4.24
2178 2287 2.627933 AGGTTAGAACAACCCCAGCTA 58.372 47.619 2.58 0.00 41.18 3.32
2179 2288 2.305052 AGGTTAGAACAACCCCAGCTAC 59.695 50.000 2.58 0.00 41.18 3.58
2180 2289 2.305052 GGTTAGAACAACCCCAGCTACT 59.695 50.000 0.00 0.00 34.26 2.57
2181 2290 3.335579 GTTAGAACAACCCCAGCTACTG 58.664 50.000 0.00 0.00 0.00 2.74
2182 2291 1.435256 AGAACAACCCCAGCTACTGT 58.565 50.000 0.00 0.00 0.00 3.55
2183 2292 2.616524 AGAACAACCCCAGCTACTGTA 58.383 47.619 0.00 0.00 0.00 2.74
2184 2293 3.182152 AGAACAACCCCAGCTACTGTAT 58.818 45.455 0.00 0.00 0.00 2.29
2185 2294 3.197983 AGAACAACCCCAGCTACTGTATC 59.802 47.826 0.00 0.00 0.00 2.24
2186 2295 1.838077 ACAACCCCAGCTACTGTATCC 59.162 52.381 0.00 0.00 0.00 2.59
2187 2296 1.141053 CAACCCCAGCTACTGTATCCC 59.859 57.143 0.00 0.00 0.00 3.85
2188 2297 0.642710 ACCCCAGCTACTGTATCCCT 59.357 55.000 0.00 0.00 0.00 4.20
2189 2298 1.864251 ACCCCAGCTACTGTATCCCTA 59.136 52.381 0.00 0.00 0.00 3.53
2190 2299 2.249214 ACCCCAGCTACTGTATCCCTAA 59.751 50.000 0.00 0.00 0.00 2.69
2191 2300 3.311103 ACCCCAGCTACTGTATCCCTAAA 60.311 47.826 0.00 0.00 0.00 1.85
2192 2301 3.910627 CCCCAGCTACTGTATCCCTAAAT 59.089 47.826 0.00 0.00 0.00 1.40
2193 2302 5.091552 CCCCAGCTACTGTATCCCTAAATA 58.908 45.833 0.00 0.00 0.00 1.40
2194 2303 5.546499 CCCCAGCTACTGTATCCCTAAATAA 59.454 44.000 0.00 0.00 0.00 1.40
2195 2304 6.043938 CCCCAGCTACTGTATCCCTAAATAAA 59.956 42.308 0.00 0.00 0.00 1.40
2196 2305 6.935208 CCCAGCTACTGTATCCCTAAATAAAC 59.065 42.308 0.00 0.00 0.00 2.01
2197 2306 7.202102 CCCAGCTACTGTATCCCTAAATAAACT 60.202 40.741 0.00 0.00 0.00 2.66
2198 2307 8.867097 CCAGCTACTGTATCCCTAAATAAACTA 58.133 37.037 0.00 0.00 0.00 2.24
2220 2329 9.979578 AACTATTGTTTATGAAAAGTTGATGCA 57.020 25.926 0.00 0.00 31.37 3.96
2221 2330 9.979578 ACTATTGTTTATGAAAAGTTGATGCAA 57.020 25.926 0.00 0.00 0.00 4.08
2229 2338 6.783892 TGAAAAGTTGATGCAAAAATAGCC 57.216 33.333 0.00 0.00 0.00 3.93
2230 2339 6.523840 TGAAAAGTTGATGCAAAAATAGCCT 58.476 32.000 0.00 0.00 0.00 4.58
2231 2340 6.991531 TGAAAAGTTGATGCAAAAATAGCCTT 59.008 30.769 0.00 0.00 0.00 4.35
2232 2341 7.171337 TGAAAAGTTGATGCAAAAATAGCCTTC 59.829 33.333 0.00 0.00 0.00 3.46
2233 2342 5.726980 AGTTGATGCAAAAATAGCCTTCA 57.273 34.783 0.00 0.00 0.00 3.02
2234 2343 6.100404 AGTTGATGCAAAAATAGCCTTCAA 57.900 33.333 0.00 0.00 33.52 2.69
2235 2344 5.928264 AGTTGATGCAAAAATAGCCTTCAAC 59.072 36.000 12.35 12.35 45.05 3.18
2236 2345 5.465532 TGATGCAAAAATAGCCTTCAACA 57.534 34.783 0.00 0.00 0.00 3.33
2237 2346 5.472148 TGATGCAAAAATAGCCTTCAACAG 58.528 37.500 0.00 0.00 0.00 3.16
2238 2347 3.652274 TGCAAAAATAGCCTTCAACAGC 58.348 40.909 0.00 0.00 0.00 4.40
2239 2348 3.321682 TGCAAAAATAGCCTTCAACAGCT 59.678 39.130 0.00 0.00 43.20 4.24
2240 2349 3.922850 GCAAAAATAGCCTTCAACAGCTC 59.077 43.478 0.00 0.00 40.56 4.09
2241 2350 4.321527 GCAAAAATAGCCTTCAACAGCTCT 60.322 41.667 0.00 0.00 40.56 4.09
2242 2351 5.397326 CAAAAATAGCCTTCAACAGCTCTC 58.603 41.667 0.00 0.00 40.56 3.20
2243 2352 2.593346 ATAGCCTTCAACAGCTCTCG 57.407 50.000 0.00 0.00 40.56 4.04
2244 2353 1.257743 TAGCCTTCAACAGCTCTCGT 58.742 50.000 0.00 0.00 40.56 4.18
2245 2354 1.257743 AGCCTTCAACAGCTCTCGTA 58.742 50.000 0.00 0.00 32.71 3.43
2246 2355 1.618837 AGCCTTCAACAGCTCTCGTAA 59.381 47.619 0.00 0.00 32.71 3.18
2247 2356 2.037251 AGCCTTCAACAGCTCTCGTAAA 59.963 45.455 0.00 0.00 32.71 2.01
2248 2357 2.413453 GCCTTCAACAGCTCTCGTAAAG 59.587 50.000 0.00 0.00 0.00 1.85
2249 2358 2.413453 CCTTCAACAGCTCTCGTAAAGC 59.587 50.000 0.00 0.00 40.14 3.51
2250 2359 2.080286 TCAACAGCTCTCGTAAAGCC 57.920 50.000 0.00 0.00 40.75 4.35
2251 2360 0.716108 CAACAGCTCTCGTAAAGCCG 59.284 55.000 0.00 0.00 40.75 5.52
2252 2361 0.389948 AACAGCTCTCGTAAAGCCGG 60.390 55.000 0.00 0.00 40.75 6.13
2253 2362 1.248785 ACAGCTCTCGTAAAGCCGGA 61.249 55.000 5.05 0.00 40.75 5.14
2254 2363 0.108804 CAGCTCTCGTAAAGCCGGAA 60.109 55.000 5.05 0.00 40.75 4.30
2255 2364 0.606604 AGCTCTCGTAAAGCCGGAAA 59.393 50.000 5.05 0.00 40.75 3.13
2256 2365 1.001633 AGCTCTCGTAAAGCCGGAAAA 59.998 47.619 5.05 0.00 40.75 2.29
2257 2366 1.802365 GCTCTCGTAAAGCCGGAAAAA 59.198 47.619 5.05 0.00 33.53 1.94
2258 2367 2.418976 GCTCTCGTAAAGCCGGAAAAAT 59.581 45.455 5.05 0.00 33.53 1.82
2259 2368 3.119955 GCTCTCGTAAAGCCGGAAAAATT 60.120 43.478 5.05 0.00 33.53 1.82
2260 2369 4.615223 GCTCTCGTAAAGCCGGAAAAATTT 60.615 41.667 5.05 0.00 33.53 1.82
2261 2370 5.391203 GCTCTCGTAAAGCCGGAAAAATTTA 60.391 40.000 5.05 0.00 33.53 1.40
2262 2371 5.930405 TCTCGTAAAGCCGGAAAAATTTAC 58.070 37.500 5.05 10.60 35.67 2.01
2271 2380 4.976224 CGGAAAAATTTACGGGATCCTT 57.024 40.909 12.58 1.34 40.71 3.36
2272 2381 4.916870 CGGAAAAATTTACGGGATCCTTC 58.083 43.478 12.58 3.91 40.71 3.46
2273 2382 4.495184 CGGAAAAATTTACGGGATCCTTCG 60.495 45.833 12.58 10.37 40.71 3.79
2274 2383 4.201980 GGAAAAATTTACGGGATCCTTCGG 60.202 45.833 12.58 1.44 0.00 4.30
2275 2384 3.918294 AAATTTACGGGATCCTTCGGA 57.082 42.857 12.58 0.64 35.55 4.55
2276 2385 3.470645 AATTTACGGGATCCTTCGGAG 57.529 47.619 12.58 0.00 34.05 4.63
2277 2386 1.856629 TTTACGGGATCCTTCGGAGT 58.143 50.000 12.58 5.39 34.05 3.85
2278 2387 1.856629 TTACGGGATCCTTCGGAGTT 58.143 50.000 12.58 0.00 34.05 3.01
2279 2388 2.734755 TACGGGATCCTTCGGAGTTA 57.265 50.000 12.58 0.00 34.05 2.24
2280 2389 1.109609 ACGGGATCCTTCGGAGTTAC 58.890 55.000 12.58 0.00 34.05 2.50
2281 2390 0.388294 CGGGATCCTTCGGAGTTACC 59.612 60.000 12.58 0.00 34.05 2.85
2282 2391 1.790818 GGGATCCTTCGGAGTTACCT 58.209 55.000 12.58 0.00 34.05 3.08
2283 2392 1.413077 GGGATCCTTCGGAGTTACCTG 59.587 57.143 12.58 0.00 34.05 4.00
2284 2393 1.413077 GGATCCTTCGGAGTTACCTGG 59.587 57.143 3.84 0.00 34.05 4.45
2285 2394 2.385803 GATCCTTCGGAGTTACCTGGA 58.614 52.381 0.00 0.00 34.05 3.86
2286 2395 1.848652 TCCTTCGGAGTTACCTGGAG 58.151 55.000 0.00 0.00 36.31 3.86
2287 2396 0.175989 CCTTCGGAGTTACCTGGAGC 59.824 60.000 0.00 0.00 36.31 4.70
2288 2397 0.175989 CTTCGGAGTTACCTGGAGCC 59.824 60.000 0.00 0.00 36.31 4.70
2289 2398 0.252103 TTCGGAGTTACCTGGAGCCT 60.252 55.000 0.00 0.00 36.31 4.58
2290 2399 0.683504 TCGGAGTTACCTGGAGCCTC 60.684 60.000 0.00 1.72 36.31 4.70
2291 2400 1.677637 CGGAGTTACCTGGAGCCTCC 61.678 65.000 2.98 2.98 38.65 4.30
2292 2401 1.338890 GGAGTTACCTGGAGCCTCCC 61.339 65.000 8.62 0.00 36.52 4.30
2293 2402 1.677637 GAGTTACCTGGAGCCTCCCG 61.678 65.000 8.62 0.87 35.03 5.14
2294 2403 2.365105 TTACCTGGAGCCTCCCGG 60.365 66.667 18.80 18.80 45.34 5.73
2313 2422 3.480133 CCCAGAACCCCCGGCTAG 61.480 72.222 0.00 0.00 0.00 3.42
2314 2423 4.176752 CCAGAACCCCCGGCTAGC 62.177 72.222 6.04 6.04 0.00 3.42
2315 2424 4.176752 CAGAACCCCCGGCTAGCC 62.177 72.222 24.75 24.75 0.00 3.93
2316 2425 4.416601 AGAACCCCCGGCTAGCCT 62.417 66.667 30.55 11.65 0.00 4.58
2317 2426 3.862991 GAACCCCCGGCTAGCCTC 61.863 72.222 30.55 16.70 0.00 4.70
2321 2430 3.866582 CCCCGGCTAGCCTCCAAG 61.867 72.222 30.55 14.94 0.00 3.61
2322 2431 4.554036 CCCGGCTAGCCTCCAAGC 62.554 72.222 30.55 3.41 38.03 4.01
2324 2433 2.586792 CGGCTAGCCTCCAAGCTT 59.413 61.111 30.55 0.00 41.41 3.74
2325 2434 1.078143 CGGCTAGCCTCCAAGCTTT 60.078 57.895 30.55 0.00 41.41 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.238701 GCTTCCCCTCTTTCCCCCA 61.239 63.158 0.00 0.00 0.00 4.96
4 5 2.438614 GGCGCTTCCCCTCTTTCC 60.439 66.667 7.64 0.00 0.00 3.13
5 6 2.234913 TACGGCGCTTCCCCTCTTTC 62.235 60.000 6.90 0.00 0.00 2.62
9 10 1.006454 GTATACGGCGCTTCCCCTC 60.006 63.158 6.90 0.00 0.00 4.30
15 16 0.663568 GCGATCTGTATACGGCGCTT 60.664 55.000 22.03 0.00 41.09 4.68
18 19 4.148230 GGCGATCTGTATACGGCG 57.852 61.111 4.80 4.80 41.89 6.46
87 89 1.517832 CTCCAACCGGTGCCTAGAG 59.482 63.158 8.52 6.53 0.00 2.43
95 97 2.203182 TGACCTCCTCCAACCGGT 59.797 61.111 0.00 0.00 0.00 5.28
135 138 7.228507 ACACAACATTCTAACTGAACTATGCAA 59.771 33.333 0.00 0.00 37.52 4.08
279 289 1.694150 TCTTCAGACACCAGGTTCCTG 59.306 52.381 11.52 11.52 0.00 3.86
287 326 3.869065 AGAAACGTTTCTTCAGACACCA 58.131 40.909 32.60 0.00 44.70 4.17
385 437 0.319297 ACTACAAAGACCGCACCGAC 60.319 55.000 0.00 0.00 0.00 4.79
411 469 1.066573 AGATCGAACCCTGCAAGTCTG 60.067 52.381 0.00 0.00 0.00 3.51
412 470 1.205893 GAGATCGAACCCTGCAAGTCT 59.794 52.381 0.00 0.00 0.00 3.24
413 471 1.205893 AGAGATCGAACCCTGCAAGTC 59.794 52.381 0.00 0.00 0.00 3.01
414 472 1.066573 CAGAGATCGAACCCTGCAAGT 60.067 52.381 0.00 0.00 0.00 3.16
415 473 1.066573 ACAGAGATCGAACCCTGCAAG 60.067 52.381 4.07 0.00 0.00 4.01
416 474 0.976641 ACAGAGATCGAACCCTGCAA 59.023 50.000 4.07 0.00 0.00 4.08
417 475 0.976641 AACAGAGATCGAACCCTGCA 59.023 50.000 4.07 0.00 0.00 4.41
465 523 3.999663 GCCAGCTTCATCACTATACATCC 59.000 47.826 0.00 0.00 0.00 3.51
467 525 4.694760 TGCCAGCTTCATCACTATACAT 57.305 40.909 0.00 0.00 0.00 2.29
469 527 6.382869 AAATTGCCAGCTTCATCACTATAC 57.617 37.500 0.00 0.00 0.00 1.47
497 555 2.648059 AGCAAGTATTAGCAAGCAGGG 58.352 47.619 0.00 0.00 0.00 4.45
516 574 2.028130 AGATCGGCAGAAGGACAGTAG 58.972 52.381 0.00 0.00 0.00 2.57
567 625 5.780282 AGTATGGTTACATGCTAGCATCCTA 59.220 40.000 27.34 16.05 46.34 2.94
571 629 5.551305 TCAGTATGGTTACATGCTAGCAT 57.449 39.130 24.67 24.67 46.45 3.79
640 706 2.769893 CCTGCCTTTGTCCCAAAAATG 58.230 47.619 0.00 0.00 0.00 2.32
660 726 1.210478 TGAAATCAGTAGAGGGCCTGC 59.790 52.381 12.95 2.21 0.00 4.85
662 728 5.667626 TCTTAATGAAATCAGTAGAGGGCCT 59.332 40.000 5.25 5.25 0.00 5.19
712 778 6.462067 CCCAGAAAGCAACAAGAGAAAGAATT 60.462 38.462 0.00 0.00 0.00 2.17
713 779 5.010415 CCCAGAAAGCAACAAGAGAAAGAAT 59.990 40.000 0.00 0.00 0.00 2.40
714 780 4.339247 CCCAGAAAGCAACAAGAGAAAGAA 59.661 41.667 0.00 0.00 0.00 2.52
715 781 3.885297 CCCAGAAAGCAACAAGAGAAAGA 59.115 43.478 0.00 0.00 0.00 2.52
716 782 3.633986 ACCCAGAAAGCAACAAGAGAAAG 59.366 43.478 0.00 0.00 0.00 2.62
717 783 3.631250 ACCCAGAAAGCAACAAGAGAAA 58.369 40.909 0.00 0.00 0.00 2.52
778 860 7.382759 TGATTTTAAATTTCGCTTTTACGCCTT 59.617 29.630 0.00 0.00 0.00 4.35
921 1009 7.128592 GGTAATGCCACAAAACCTCTGTTTTT 61.129 38.462 0.92 0.00 43.08 1.94
962 1050 6.959639 AACTGCCAAGATAAAAACAAGAGA 57.040 33.333 0.00 0.00 0.00 3.10
963 1051 7.428826 AGAAACTGCCAAGATAAAAACAAGAG 58.571 34.615 0.00 0.00 0.00 2.85
968 1056 9.308318 TGTTTTAGAAACTGCCAAGATAAAAAC 57.692 29.630 5.30 0.00 35.02 2.43
969 1057 9.877178 TTGTTTTAGAAACTGCCAAGATAAAAA 57.123 25.926 5.30 0.00 0.00 1.94
973 1061 8.296713 GTGATTGTTTTAGAAACTGCCAAGATA 58.703 33.333 5.30 0.00 0.00 1.98
980 1068 6.363357 GGACATGTGATTGTTTTAGAAACTGC 59.637 38.462 1.15 0.00 0.00 4.40
1035 1123 3.189287 CAGTACCAGCAAAGATCACCAAC 59.811 47.826 0.00 0.00 0.00 3.77
1111 1200 4.602340 ATCTACGTTTCTCAACCAGTGT 57.398 40.909 0.00 0.00 0.00 3.55
1126 1215 3.036633 GCACACGACATGTCTATCTACG 58.963 50.000 22.95 11.39 40.64 3.51
1134 1223 0.454957 GCCAATGCACACGACATGTC 60.455 55.000 16.21 16.21 40.64 3.06
1137 1226 1.588824 CCAGCCAATGCACACGACAT 61.589 55.000 0.00 0.00 41.13 3.06
1141 1230 2.495366 AATGCCAGCCAATGCACACG 62.495 55.000 0.00 0.00 40.88 4.49
1166 1255 7.284716 GGGGTAAGAAATGGATAAAGGTTACAG 59.715 40.741 0.00 0.00 0.00 2.74
1220 1310 1.442769 GCAGAGGCTTCGTTGAATCA 58.557 50.000 0.00 0.00 36.96 2.57
1358 1448 0.037975 GGTTTTCTGCATGCCCACTG 60.038 55.000 16.68 0.30 0.00 3.66
1359 1449 0.469705 TGGTTTTCTGCATGCCCACT 60.470 50.000 16.68 0.00 0.00 4.00
1360 1450 0.037975 CTGGTTTTCTGCATGCCCAC 60.038 55.000 16.68 4.31 0.00 4.61
1361 1451 0.469705 ACTGGTTTTCTGCATGCCCA 60.470 50.000 16.68 12.90 0.00 5.36
1399 1497 4.693283 TCACCACCTCGCTATTAAATCAG 58.307 43.478 0.00 0.00 0.00 2.90
1402 1500 6.590292 CGATTATCACCACCTCGCTATTAAAT 59.410 38.462 0.00 0.00 0.00 1.40
1403 1501 5.924254 CGATTATCACCACCTCGCTATTAAA 59.076 40.000 0.00 0.00 0.00 1.52
1404 1502 5.466819 CGATTATCACCACCTCGCTATTAA 58.533 41.667 0.00 0.00 0.00 1.40
1405 1503 4.082408 CCGATTATCACCACCTCGCTATTA 60.082 45.833 0.00 0.00 0.00 0.98
1406 1504 3.306088 CCGATTATCACCACCTCGCTATT 60.306 47.826 0.00 0.00 0.00 1.73
1407 1505 2.231478 CCGATTATCACCACCTCGCTAT 59.769 50.000 0.00 0.00 0.00 2.97
1408 1506 1.611977 CCGATTATCACCACCTCGCTA 59.388 52.381 0.00 0.00 0.00 4.26
1409 1507 0.389391 CCGATTATCACCACCTCGCT 59.611 55.000 0.00 0.00 0.00 4.93
1410 1508 1.222115 GCCGATTATCACCACCTCGC 61.222 60.000 0.00 0.00 0.00 5.03
1411 1509 0.389391 AGCCGATTATCACCACCTCG 59.611 55.000 0.00 0.00 0.00 4.63
1412 1510 1.603172 CGAGCCGATTATCACCACCTC 60.603 57.143 0.00 0.00 0.00 3.85
1413 1511 0.389391 CGAGCCGATTATCACCACCT 59.611 55.000 0.00 0.00 0.00 4.00
1414 1512 0.104304 ACGAGCCGATTATCACCACC 59.896 55.000 1.50 0.00 0.00 4.61
1415 1513 1.202371 TCACGAGCCGATTATCACCAC 60.202 52.381 1.50 0.00 0.00 4.16
1416 1514 1.107945 TCACGAGCCGATTATCACCA 58.892 50.000 1.50 0.00 0.00 4.17
1417 1515 2.061773 CATCACGAGCCGATTATCACC 58.938 52.381 1.50 0.00 0.00 4.02
1418 1516 1.457303 GCATCACGAGCCGATTATCAC 59.543 52.381 1.50 0.00 0.00 3.06
1419 1517 1.341209 AGCATCACGAGCCGATTATCA 59.659 47.619 1.50 0.00 0.00 2.15
1420 1518 1.723542 CAGCATCACGAGCCGATTATC 59.276 52.381 1.50 0.00 0.00 1.75
1425 1523 4.147449 CCCAGCATCACGAGCCGA 62.147 66.667 1.50 0.00 0.00 5.54
1449 1547 2.540361 CCGAAGCTAATGCACTGCAATC 60.540 50.000 8.03 0.00 43.62 2.67
1455 1553 2.744202 CTGAAACCGAAGCTAATGCACT 59.256 45.455 0.00 0.00 42.74 4.40
1459 1557 3.074412 ACACCTGAAACCGAAGCTAATG 58.926 45.455 0.00 0.00 0.00 1.90
1474 1575 1.812235 TGCTCTGCACATAACACCTG 58.188 50.000 0.00 0.00 31.71 4.00
1491 1600 1.599071 ACTGCGTACATATGCATGTGC 59.401 47.619 21.91 10.58 46.08 4.57
1504 1613 5.580691 CCTACAATTCATGAAGAACTGCGTA 59.419 40.000 14.54 6.31 36.97 4.42
1505 1614 4.393062 CCTACAATTCATGAAGAACTGCGT 59.607 41.667 14.54 5.55 36.97 5.24
1508 1617 5.879223 AGAGCCTACAATTCATGAAGAACTG 59.121 40.000 14.54 10.44 39.29 3.16
1517 1626 5.882557 ACGATCAAAAGAGCCTACAATTCAT 59.117 36.000 0.00 0.00 0.00 2.57
1522 1631 4.454504 GGAAACGATCAAAAGAGCCTACAA 59.545 41.667 0.00 0.00 0.00 2.41
1527 1636 2.814336 ACAGGAAACGATCAAAAGAGCC 59.186 45.455 0.00 0.00 0.00 4.70
1530 1639 3.476552 AGCACAGGAAACGATCAAAAGA 58.523 40.909 0.00 0.00 0.00 2.52
1559 1668 3.670627 GCACAACGCTTTGGAAGGAATAG 60.671 47.826 7.92 0.00 37.00 1.73
1614 1723 2.096657 GCAACGCAAACCCAACATTTTT 59.903 40.909 0.00 0.00 0.00 1.94
1615 1724 1.668237 GCAACGCAAACCCAACATTTT 59.332 42.857 0.00 0.00 0.00 1.82
1616 1725 1.134551 AGCAACGCAAACCCAACATTT 60.135 42.857 0.00 0.00 0.00 2.32
1617 1726 0.463620 AGCAACGCAAACCCAACATT 59.536 45.000 0.00 0.00 0.00 2.71
1618 1727 0.249405 CAGCAACGCAAACCCAACAT 60.249 50.000 0.00 0.00 0.00 2.71
1619 1728 1.140589 CAGCAACGCAAACCCAACA 59.859 52.632 0.00 0.00 0.00 3.33
1620 1729 0.179124 TTCAGCAACGCAAACCCAAC 60.179 50.000 0.00 0.00 0.00 3.77
1621 1730 0.102120 CTTCAGCAACGCAAACCCAA 59.898 50.000 0.00 0.00 0.00 4.12
1622 1731 1.732917 CTTCAGCAACGCAAACCCA 59.267 52.632 0.00 0.00 0.00 4.51
1623 1732 1.007387 CCTTCAGCAACGCAAACCC 60.007 57.895 0.00 0.00 0.00 4.11
1624 1733 0.594796 CACCTTCAGCAACGCAAACC 60.595 55.000 0.00 0.00 0.00 3.27
1625 1734 0.100503 ACACCTTCAGCAACGCAAAC 59.899 50.000 0.00 0.00 0.00 2.93
1626 1735 0.100325 CACACCTTCAGCAACGCAAA 59.900 50.000 0.00 0.00 0.00 3.68
1627 1736 0.746204 TCACACCTTCAGCAACGCAA 60.746 50.000 0.00 0.00 0.00 4.85
1628 1737 1.153269 TCACACCTTCAGCAACGCA 60.153 52.632 0.00 0.00 0.00 5.24
1629 1738 1.571460 CTCACACCTTCAGCAACGC 59.429 57.895 0.00 0.00 0.00 4.84
1630 1739 1.845809 GCCTCACACCTTCAGCAACG 61.846 60.000 0.00 0.00 0.00 4.10
1631 1740 1.518903 GGCCTCACACCTTCAGCAAC 61.519 60.000 0.00 0.00 0.00 4.17
1632 1741 1.228245 GGCCTCACACCTTCAGCAA 60.228 57.895 0.00 0.00 0.00 3.91
1633 1742 1.782201 ATGGCCTCACACCTTCAGCA 61.782 55.000 3.32 0.00 0.00 4.41
1634 1743 0.253044 TATGGCCTCACACCTTCAGC 59.747 55.000 3.32 0.00 0.00 4.26
1635 1744 2.787473 TTATGGCCTCACACCTTCAG 57.213 50.000 3.32 0.00 0.00 3.02
1636 1745 3.010027 TCATTTATGGCCTCACACCTTCA 59.990 43.478 3.32 0.00 0.00 3.02
1637 1746 3.620488 TCATTTATGGCCTCACACCTTC 58.380 45.455 3.32 0.00 0.00 3.46
1638 1747 3.737559 TCATTTATGGCCTCACACCTT 57.262 42.857 3.32 0.00 0.00 3.50
1639 1748 3.959495 ATCATTTATGGCCTCACACCT 57.041 42.857 3.32 0.00 0.00 4.00
1640 1749 4.718961 AGTATCATTTATGGCCTCACACC 58.281 43.478 3.32 0.00 0.00 4.16
1641 1750 4.757149 GGAGTATCATTTATGGCCTCACAC 59.243 45.833 3.32 0.00 36.25 3.82
1642 1751 4.202461 GGGAGTATCATTTATGGCCTCACA 60.202 45.833 3.32 0.00 36.25 3.58
1643 1752 4.042187 AGGGAGTATCATTTATGGCCTCAC 59.958 45.833 3.32 0.00 36.25 3.51
1644 1753 4.242811 AGGGAGTATCATTTATGGCCTCA 58.757 43.478 3.32 0.00 36.25 3.86
1645 1754 4.323868 GGAGGGAGTATCATTTATGGCCTC 60.324 50.000 3.32 0.00 36.25 4.70
1646 1755 3.589288 GGAGGGAGTATCATTTATGGCCT 59.411 47.826 3.32 0.00 36.25 5.19
1647 1756 3.589288 AGGAGGGAGTATCATTTATGGCC 59.411 47.826 0.00 0.00 36.25 5.36
1648 1757 4.917906 AGGAGGGAGTATCATTTATGGC 57.082 45.455 0.00 0.00 36.25 4.40
1649 1758 7.290061 TGAAAAGGAGGGAGTATCATTTATGG 58.710 38.462 0.00 0.00 36.25 2.74
1650 1759 8.930846 ATGAAAAGGAGGGAGTATCATTTATG 57.069 34.615 0.00 0.00 36.25 1.90
1652 1761 9.225682 AGTATGAAAAGGAGGGAGTATCATTTA 57.774 33.333 0.00 0.00 36.25 1.40
1653 1762 8.107196 AGTATGAAAAGGAGGGAGTATCATTT 57.893 34.615 0.00 0.00 36.25 2.32
1654 1763 7.698163 AGTATGAAAAGGAGGGAGTATCATT 57.302 36.000 0.00 0.00 36.25 2.57
1655 1764 8.013667 AGTAGTATGAAAAGGAGGGAGTATCAT 58.986 37.037 0.00 0.00 36.25 2.45
1656 1765 7.363031 AGTAGTATGAAAAGGAGGGAGTATCA 58.637 38.462 0.00 0.00 36.25 2.15
1657 1766 7.039574 GGAGTAGTATGAAAAGGAGGGAGTATC 60.040 44.444 0.00 0.00 0.00 2.24
1658 1767 6.783482 GGAGTAGTATGAAAAGGAGGGAGTAT 59.217 42.308 0.00 0.00 0.00 2.12
1659 1768 6.134754 GGAGTAGTATGAAAAGGAGGGAGTA 58.865 44.000 0.00 0.00 0.00 2.59
1660 1769 4.963628 GGAGTAGTATGAAAAGGAGGGAGT 59.036 45.833 0.00 0.00 0.00 3.85
1661 1770 4.345547 GGGAGTAGTATGAAAAGGAGGGAG 59.654 50.000 0.00 0.00 0.00 4.30
1662 1771 4.015541 AGGGAGTAGTATGAAAAGGAGGGA 60.016 45.833 0.00 0.00 0.00 4.20
1663 1772 4.299485 AGGGAGTAGTATGAAAAGGAGGG 58.701 47.826 0.00 0.00 0.00 4.30
1664 1773 4.345547 GGAGGGAGTAGTATGAAAAGGAGG 59.654 50.000 0.00 0.00 0.00 4.30
1665 1774 5.212745 AGGAGGGAGTAGTATGAAAAGGAG 58.787 45.833 0.00 0.00 0.00 3.69
1666 1775 5.222278 AGGAGGGAGTAGTATGAAAAGGA 57.778 43.478 0.00 0.00 0.00 3.36
1667 1776 5.959583 AAGGAGGGAGTAGTATGAAAAGG 57.040 43.478 0.00 0.00 0.00 3.11
1668 1777 7.625469 AGAAAAGGAGGGAGTAGTATGAAAAG 58.375 38.462 0.00 0.00 0.00 2.27
1669 1778 7.569599 AGAAAAGGAGGGAGTAGTATGAAAA 57.430 36.000 0.00 0.00 0.00 2.29
1670 1779 8.674925 TTAGAAAAGGAGGGAGTAGTATGAAA 57.325 34.615 0.00 0.00 0.00 2.69
1671 1780 8.674925 TTTAGAAAAGGAGGGAGTAGTATGAA 57.325 34.615 0.00 0.00 0.00 2.57
1672 1781 8.855804 ATTTAGAAAAGGAGGGAGTAGTATGA 57.144 34.615 0.00 0.00 0.00 2.15
1698 1807 9.295825 TCAGTTTGAACTACCAAAACATCATAT 57.704 29.630 0.00 0.00 37.72 1.78
1699 1808 8.684386 TCAGTTTGAACTACCAAAACATCATA 57.316 30.769 0.00 0.00 37.72 2.15
1700 1809 7.581213 TCAGTTTGAACTACCAAAACATCAT 57.419 32.000 0.00 0.00 37.72 2.45
1701 1810 7.397892 TTCAGTTTGAACTACCAAAACATCA 57.602 32.000 0.00 0.00 37.72 3.07
1715 1824 6.036300 ACGACGTTTTGATAGTTCAGTTTGAA 59.964 34.615 0.00 0.00 33.32 2.69
1716 1825 5.521010 ACGACGTTTTGATAGTTCAGTTTGA 59.479 36.000 0.00 0.00 32.27 2.69
1717 1826 5.734311 ACGACGTTTTGATAGTTCAGTTTG 58.266 37.500 0.00 0.00 32.27 2.93
1718 1827 5.978934 ACGACGTTTTGATAGTTCAGTTT 57.021 34.783 0.00 0.00 32.27 2.66
1719 1828 5.978919 TGTACGACGTTTTGATAGTTCAGTT 59.021 36.000 5.50 0.00 32.27 3.16
1720 1829 5.522456 TGTACGACGTTTTGATAGTTCAGT 58.478 37.500 5.50 0.00 32.27 3.41
1721 1830 6.627690 ATGTACGACGTTTTGATAGTTCAG 57.372 37.500 5.50 0.00 32.27 3.02
1722 1831 7.410800 AAATGTACGACGTTTTGATAGTTCA 57.589 32.000 5.50 0.00 33.87 3.18
1723 1832 8.106348 CCTAAATGTACGACGTTTTGATAGTTC 58.894 37.037 5.50 0.00 38.23 3.01
1724 1833 7.814107 TCCTAAATGTACGACGTTTTGATAGTT 59.186 33.333 5.50 0.00 38.23 2.24
1725 1834 7.315142 TCCTAAATGTACGACGTTTTGATAGT 58.685 34.615 5.50 0.00 38.23 2.12
1726 1835 7.745022 TCCTAAATGTACGACGTTTTGATAG 57.255 36.000 5.50 4.50 38.23 2.08
1727 1836 8.597227 CATTCCTAAATGTACGACGTTTTGATA 58.403 33.333 5.50 0.00 38.23 2.15
1728 1837 7.413657 CCATTCCTAAATGTACGACGTTTTGAT 60.414 37.037 5.50 0.00 40.63 2.57
1729 1838 6.128499 CCATTCCTAAATGTACGACGTTTTGA 60.128 38.462 5.50 0.00 40.63 2.69
1730 1839 6.019152 CCATTCCTAAATGTACGACGTTTTG 58.981 40.000 5.50 0.00 40.63 2.44
1731 1840 5.933463 TCCATTCCTAAATGTACGACGTTTT 59.067 36.000 5.50 3.41 40.63 2.43
1732 1841 5.481105 TCCATTCCTAAATGTACGACGTTT 58.519 37.500 5.50 0.00 40.63 3.60
1733 1842 5.075858 TCCATTCCTAAATGTACGACGTT 57.924 39.130 5.50 0.00 40.63 3.99
1734 1843 4.441079 CCTCCATTCCTAAATGTACGACGT 60.441 45.833 5.52 5.52 40.63 4.34
1735 1844 4.049186 CCTCCATTCCTAAATGTACGACG 58.951 47.826 0.00 0.00 40.63 5.12
1736 1845 4.100498 TCCCTCCATTCCTAAATGTACGAC 59.900 45.833 0.00 0.00 40.63 4.34
1737 1846 4.291792 TCCCTCCATTCCTAAATGTACGA 58.708 43.478 0.00 0.00 40.63 3.43
1738 1847 4.101119 ACTCCCTCCATTCCTAAATGTACG 59.899 45.833 0.00 0.00 40.63 3.67
1739 1848 5.632034 ACTCCCTCCATTCCTAAATGTAC 57.368 43.478 0.00 0.00 40.63 2.90
1740 1849 9.629649 AATATACTCCCTCCATTCCTAAATGTA 57.370 33.333 0.00 0.00 40.63 2.29
1741 1850 8.525729 AATATACTCCCTCCATTCCTAAATGT 57.474 34.615 0.00 0.00 40.63 2.71
1747 1856 8.322091 CGAAATTAATATACTCCCTCCATTCCT 58.678 37.037 0.00 0.00 0.00 3.36
1748 1857 8.101419 ACGAAATTAATATACTCCCTCCATTCC 58.899 37.037 0.00 0.00 0.00 3.01
1771 1880 8.965172 GCTCTCATAAAGTTCGAATTAATACGA 58.035 33.333 0.00 0.00 36.75 3.43
1772 1881 8.215132 GGCTCTCATAAAGTTCGAATTAATACG 58.785 37.037 0.00 0.00 0.00 3.06
1773 1882 9.042008 TGGCTCTCATAAAGTTCGAATTAATAC 57.958 33.333 0.00 0.00 0.00 1.89
1774 1883 9.607988 TTGGCTCTCATAAAGTTCGAATTAATA 57.392 29.630 0.00 0.00 0.00 0.98
1775 1884 8.506168 TTGGCTCTCATAAAGTTCGAATTAAT 57.494 30.769 0.00 0.00 0.00 1.40
1776 1885 7.915293 TTGGCTCTCATAAAGTTCGAATTAA 57.085 32.000 0.00 0.00 0.00 1.40
1777 1886 8.506168 AATTGGCTCTCATAAAGTTCGAATTA 57.494 30.769 0.00 0.00 0.00 1.40
1778 1887 7.396540 AATTGGCTCTCATAAAGTTCGAATT 57.603 32.000 0.00 0.00 0.00 2.17
1779 1888 7.337942 AGAAATTGGCTCTCATAAAGTTCGAAT 59.662 33.333 0.00 0.00 0.00 3.34
1780 1889 6.655003 AGAAATTGGCTCTCATAAAGTTCGAA 59.345 34.615 0.00 0.00 0.00 3.71
1781 1890 6.173339 AGAAATTGGCTCTCATAAAGTTCGA 58.827 36.000 0.00 0.00 0.00 3.71
1782 1891 6.428385 AGAAATTGGCTCTCATAAAGTTCG 57.572 37.500 0.00 0.00 0.00 3.95
1783 1892 8.723942 TCTAGAAATTGGCTCTCATAAAGTTC 57.276 34.615 0.00 0.00 0.00 3.01
1784 1893 9.520515 TTTCTAGAAATTGGCTCTCATAAAGTT 57.479 29.630 13.99 0.00 0.00 2.66
1785 1894 9.520515 TTTTCTAGAAATTGGCTCTCATAAAGT 57.479 29.630 18.37 0.00 0.00 2.66
1877 1986 8.956426 ATCATTAGATACGTTGTGGAACATTTT 58.044 29.630 0.00 0.00 38.88 1.82
1878 1987 8.506168 ATCATTAGATACGTTGTGGAACATTT 57.494 30.769 0.00 0.00 38.88 2.32
1879 1988 9.778741 ATATCATTAGATACGTTGTGGAACATT 57.221 29.630 0.00 0.00 42.63 2.71
1880 1989 9.778741 AATATCATTAGATACGTTGTGGAACAT 57.221 29.630 0.00 0.00 42.63 2.71
1881 1990 9.607988 AAATATCATTAGATACGTTGTGGAACA 57.392 29.630 0.00 0.00 41.89 3.18
1885 1994 9.663904 CCAAAAATATCATTAGATACGTTGTGG 57.336 33.333 0.00 0.00 39.43 4.17
1904 2013 9.612066 AGAAACAACATTCACAATACCAAAAAT 57.388 25.926 0.00 0.00 0.00 1.82
1905 2014 9.442047 AAGAAACAACATTCACAATACCAAAAA 57.558 25.926 0.00 0.00 0.00 1.94
1906 2015 9.442047 AAAGAAACAACATTCACAATACCAAAA 57.558 25.926 0.00 0.00 0.00 2.44
1914 2023 9.796120 CTAGGTTTAAAGAAACAACATTCACAA 57.204 29.630 3.23 0.00 45.78 3.33
1915 2024 8.962679 ACTAGGTTTAAAGAAACAACATTCACA 58.037 29.630 0.00 0.00 45.78 3.58
1916 2025 9.447040 GACTAGGTTTAAAGAAACAACATTCAC 57.553 33.333 0.00 0.00 45.78 3.18
1917 2026 9.179909 TGACTAGGTTTAAAGAAACAACATTCA 57.820 29.630 0.00 0.00 45.78 2.57
1920 2029 9.797556 GTTTGACTAGGTTTAAAGAAACAACAT 57.202 29.630 0.00 0.00 45.78 2.71
1921 2030 9.016438 AGTTTGACTAGGTTTAAAGAAACAACA 57.984 29.630 0.00 0.00 45.78 3.33
1922 2031 9.850628 AAGTTTGACTAGGTTTAAAGAAACAAC 57.149 29.630 0.00 0.00 45.78 3.32
1924 2033 9.233649 TGAAGTTTGACTAGGTTTAAAGAAACA 57.766 29.630 0.00 0.00 45.78 2.83
1925 2034 9.499585 GTGAAGTTTGACTAGGTTTAAAGAAAC 57.500 33.333 0.00 0.00 43.65 2.78
1926 2035 9.457436 AGTGAAGTTTGACTAGGTTTAAAGAAA 57.543 29.630 0.00 0.00 0.00 2.52
1934 2043 9.403583 TCAAAATTAGTGAAGTTTGACTAGGTT 57.596 29.630 8.69 0.00 46.92 3.50
1935 2044 8.974060 TCAAAATTAGTGAAGTTTGACTAGGT 57.026 30.769 8.69 0.00 46.92 3.08
1977 2086 9.685276 ACTCCATCTGTTTCATATTTTCACATA 57.315 29.630 0.00 0.00 0.00 2.29
1978 2087 8.585471 ACTCCATCTGTTTCATATTTTCACAT 57.415 30.769 0.00 0.00 0.00 3.21
1979 2088 8.946085 GTACTCCATCTGTTTCATATTTTCACA 58.054 33.333 0.00 0.00 0.00 3.58
1980 2089 8.116753 CGTACTCCATCTGTTTCATATTTTCAC 58.883 37.037 0.00 0.00 0.00 3.18
1981 2090 7.279981 CCGTACTCCATCTGTTTCATATTTTCA 59.720 37.037 0.00 0.00 0.00 2.69
1982 2091 7.280205 ACCGTACTCCATCTGTTTCATATTTTC 59.720 37.037 0.00 0.00 0.00 2.29
1983 2092 7.110155 ACCGTACTCCATCTGTTTCATATTTT 58.890 34.615 0.00 0.00 0.00 1.82
1984 2093 6.650120 ACCGTACTCCATCTGTTTCATATTT 58.350 36.000 0.00 0.00 0.00 1.40
1985 2094 6.235231 ACCGTACTCCATCTGTTTCATATT 57.765 37.500 0.00 0.00 0.00 1.28
1986 2095 5.871396 ACCGTACTCCATCTGTTTCATAT 57.129 39.130 0.00 0.00 0.00 1.78
1987 2096 6.778834 TTACCGTACTCCATCTGTTTCATA 57.221 37.500 0.00 0.00 0.00 2.15
1988 2097 5.670792 TTACCGTACTCCATCTGTTTCAT 57.329 39.130 0.00 0.00 0.00 2.57
1989 2098 5.471556 TTTACCGTACTCCATCTGTTTCA 57.528 39.130 0.00 0.00 0.00 2.69
1990 2099 6.426025 ACTTTTTACCGTACTCCATCTGTTTC 59.574 38.462 0.00 0.00 0.00 2.78
1991 2100 6.293698 ACTTTTTACCGTACTCCATCTGTTT 58.706 36.000 0.00 0.00 0.00 2.83
1992 2101 5.861727 ACTTTTTACCGTACTCCATCTGTT 58.138 37.500 0.00 0.00 0.00 3.16
1993 2102 5.479124 ACTTTTTACCGTACTCCATCTGT 57.521 39.130 0.00 0.00 0.00 3.41
1994 2103 7.894376 TTTACTTTTTACCGTACTCCATCTG 57.106 36.000 0.00 0.00 0.00 2.90
1995 2104 8.943002 CATTTTACTTTTTACCGTACTCCATCT 58.057 33.333 0.00 0.00 0.00 2.90
1996 2105 8.938906 TCATTTTACTTTTTACCGTACTCCATC 58.061 33.333 0.00 0.00 0.00 3.51
1997 2106 8.851541 TCATTTTACTTTTTACCGTACTCCAT 57.148 30.769 0.00 0.00 0.00 3.41
1998 2107 8.851541 ATCATTTTACTTTTTACCGTACTCCA 57.148 30.769 0.00 0.00 0.00 3.86
1999 2108 8.938906 TGATCATTTTACTTTTTACCGTACTCC 58.061 33.333 0.00 0.00 0.00 3.85
2022 2131 9.965902 ACAAACCTTCTTAGTCTTGATTATGAT 57.034 29.630 0.00 0.00 0.00 2.45
2023 2132 9.793259 AACAAACCTTCTTAGTCTTGATTATGA 57.207 29.630 0.00 0.00 0.00 2.15
2027 2136 9.403583 TGTTAACAAACCTTCTTAGTCTTGATT 57.596 29.630 5.64 0.00 0.00 2.57
2028 2137 8.974060 TGTTAACAAACCTTCTTAGTCTTGAT 57.026 30.769 5.64 0.00 0.00 2.57
2029 2138 8.044908 ACTGTTAACAAACCTTCTTAGTCTTGA 58.955 33.333 10.03 0.00 0.00 3.02
2030 2139 8.209917 ACTGTTAACAAACCTTCTTAGTCTTG 57.790 34.615 10.03 0.00 0.00 3.02
2031 2140 9.322773 GTACTGTTAACAAACCTTCTTAGTCTT 57.677 33.333 10.03 0.00 0.00 3.01
2032 2141 8.702819 AGTACTGTTAACAAACCTTCTTAGTCT 58.297 33.333 10.03 0.00 0.00 3.24
2033 2142 8.883954 AGTACTGTTAACAAACCTTCTTAGTC 57.116 34.615 10.03 0.00 0.00 2.59
2042 2151 8.748582 GCAACAAAATAGTACTGTTAACAAACC 58.251 33.333 10.03 0.13 32.16 3.27
2043 2152 9.511144 AGCAACAAAATAGTACTGTTAACAAAC 57.489 29.630 10.03 10.70 32.16 2.93
2044 2153 9.724839 GAGCAACAAAATAGTACTGTTAACAAA 57.275 29.630 10.03 0.00 32.16 2.83
2045 2154 9.116067 AGAGCAACAAAATAGTACTGTTAACAA 57.884 29.630 10.03 0.00 32.16 2.83
2046 2155 8.671384 AGAGCAACAAAATAGTACTGTTAACA 57.329 30.769 8.28 8.28 32.16 2.41
2079 2188 8.593679 CCCCTGTCCAAACTAAATTAAGAAAAT 58.406 33.333 0.00 0.00 0.00 1.82
2080 2189 7.785506 TCCCCTGTCCAAACTAAATTAAGAAAA 59.214 33.333 0.00 0.00 0.00 2.29
2081 2190 7.299134 TCCCCTGTCCAAACTAAATTAAGAAA 58.701 34.615 0.00 0.00 0.00 2.52
2082 2191 6.854578 TCCCCTGTCCAAACTAAATTAAGAA 58.145 36.000 0.00 0.00 0.00 2.52
2083 2192 6.457159 TCCCCTGTCCAAACTAAATTAAGA 57.543 37.500 0.00 0.00 0.00 2.10
2084 2193 5.125578 GCTCCCCTGTCCAAACTAAATTAAG 59.874 44.000 0.00 0.00 0.00 1.85
2085 2194 5.014202 GCTCCCCTGTCCAAACTAAATTAA 58.986 41.667 0.00 0.00 0.00 1.40
2086 2195 4.291249 AGCTCCCCTGTCCAAACTAAATTA 59.709 41.667 0.00 0.00 0.00 1.40
2087 2196 3.076032 AGCTCCCCTGTCCAAACTAAATT 59.924 43.478 0.00 0.00 0.00 1.82
2088 2197 2.649816 AGCTCCCCTGTCCAAACTAAAT 59.350 45.455 0.00 0.00 0.00 1.40
2089 2198 2.062636 AGCTCCCCTGTCCAAACTAAA 58.937 47.619 0.00 0.00 0.00 1.85
2090 2199 1.742308 AGCTCCCCTGTCCAAACTAA 58.258 50.000 0.00 0.00 0.00 2.24
2091 2200 2.467880 CTAGCTCCCCTGTCCAAACTA 58.532 52.381 0.00 0.00 0.00 2.24
2092 2201 1.280457 CTAGCTCCCCTGTCCAAACT 58.720 55.000 0.00 0.00 0.00 2.66
2093 2202 0.253327 CCTAGCTCCCCTGTCCAAAC 59.747 60.000 0.00 0.00 0.00 2.93
2094 2203 0.178873 ACCTAGCTCCCCTGTCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2095 2204 0.178873 AACCTAGCTCCCCTGTCCAA 60.179 55.000 0.00 0.00 0.00 3.53
2096 2205 0.178873 AAACCTAGCTCCCCTGTCCA 60.179 55.000 0.00 0.00 0.00 4.02
2097 2206 0.992695 AAAACCTAGCTCCCCTGTCC 59.007 55.000 0.00 0.00 0.00 4.02
2098 2207 2.570302 TGTAAAACCTAGCTCCCCTGTC 59.430 50.000 0.00 0.00 0.00 3.51
2099 2208 2.305052 GTGTAAAACCTAGCTCCCCTGT 59.695 50.000 0.00 0.00 0.00 4.00
2100 2209 2.572104 AGTGTAAAACCTAGCTCCCCTG 59.428 50.000 0.00 0.00 0.00 4.45
2101 2210 2.572104 CAGTGTAAAACCTAGCTCCCCT 59.428 50.000 0.00 0.00 0.00 4.79
2102 2211 2.570302 TCAGTGTAAAACCTAGCTCCCC 59.430 50.000 0.00 0.00 0.00 4.81
2103 2212 3.975168 TCAGTGTAAAACCTAGCTCCC 57.025 47.619 0.00 0.00 0.00 4.30
2104 2213 3.623510 GCATCAGTGTAAAACCTAGCTCC 59.376 47.826 0.00 0.00 0.00 4.70
2105 2214 3.623510 GGCATCAGTGTAAAACCTAGCTC 59.376 47.826 0.00 0.00 0.00 4.09
2106 2215 3.610911 GGCATCAGTGTAAAACCTAGCT 58.389 45.455 0.00 0.00 0.00 3.32
2107 2216 2.683362 GGGCATCAGTGTAAAACCTAGC 59.317 50.000 0.00 0.00 0.00 3.42
2108 2217 3.941483 CTGGGCATCAGTGTAAAACCTAG 59.059 47.826 0.00 0.00 38.64 3.02
2109 2218 3.585289 TCTGGGCATCAGTGTAAAACCTA 59.415 43.478 6.26 0.00 43.76 3.08
2110 2219 2.375174 TCTGGGCATCAGTGTAAAACCT 59.625 45.455 6.26 0.00 43.76 3.50
2111 2220 2.749621 CTCTGGGCATCAGTGTAAAACC 59.250 50.000 6.26 0.00 43.76 3.27
2112 2221 2.162408 GCTCTGGGCATCAGTGTAAAAC 59.838 50.000 0.00 0.00 43.76 2.43
2113 2222 2.436417 GCTCTGGGCATCAGTGTAAAA 58.564 47.619 0.00 0.00 43.76 1.52
2114 2223 1.340017 GGCTCTGGGCATCAGTGTAAA 60.340 52.381 0.21 0.00 43.76 2.01
2115 2224 0.253044 GGCTCTGGGCATCAGTGTAA 59.747 55.000 0.21 0.00 43.76 2.41
2116 2225 0.618680 AGGCTCTGGGCATCAGTGTA 60.619 55.000 0.21 0.00 43.76 2.90
2117 2226 1.495579 AAGGCTCTGGGCATCAGTGT 61.496 55.000 0.21 0.00 43.76 3.55
2118 2227 1.030488 CAAGGCTCTGGGCATCAGTG 61.030 60.000 0.21 5.40 43.76 3.66
2119 2228 1.302285 CAAGGCTCTGGGCATCAGT 59.698 57.895 0.21 0.00 43.76 3.41
2120 2229 2.119655 GCAAGGCTCTGGGCATCAG 61.120 63.158 0.21 0.43 44.01 2.90
2121 2230 2.044650 GCAAGGCTCTGGGCATCA 60.045 61.111 0.21 0.00 44.01 3.07
2122 2231 2.044650 TGCAAGGCTCTGGGCATC 60.045 61.111 0.21 0.00 44.01 3.91
2123 2232 2.044252 CTGCAAGGCTCTGGGCAT 60.044 61.111 0.21 0.00 44.01 4.40
2124 2233 3.573229 ACTGCAAGGCTCTGGGCA 61.573 61.111 0.21 0.00 44.01 5.36
2125 2234 3.060615 CACTGCAAGGCTCTGGGC 61.061 66.667 0.00 0.00 39.30 5.36
2126 2235 0.036732 TAACACTGCAAGGCTCTGGG 59.963 55.000 0.00 0.00 39.30 4.45
2127 2236 2.012673 GATAACACTGCAAGGCTCTGG 58.987 52.381 0.00 0.00 39.30 3.86
2128 2237 2.012673 GGATAACACTGCAAGGCTCTG 58.987 52.381 0.00 0.00 39.30 3.35
2129 2238 1.630369 TGGATAACACTGCAAGGCTCT 59.370 47.619 0.00 0.00 39.30 4.09
2130 2239 2.113860 TGGATAACACTGCAAGGCTC 57.886 50.000 0.00 0.00 39.30 4.70
2131 2240 2.584835 TTGGATAACACTGCAAGGCT 57.415 45.000 0.00 0.00 39.30 4.58
2132 2241 2.754552 TCATTGGATAACACTGCAAGGC 59.245 45.455 0.00 0.00 39.30 4.35
2133 2242 5.125900 TGATTCATTGGATAACACTGCAAGG 59.874 40.000 0.00 0.00 39.30 3.61
2134 2243 6.198650 TGATTCATTGGATAACACTGCAAG 57.801 37.500 0.00 0.00 42.29 4.01
2135 2244 6.350361 CCTTGATTCATTGGATAACACTGCAA 60.350 38.462 0.00 0.00 30.44 4.08
2136 2245 5.125900 CCTTGATTCATTGGATAACACTGCA 59.874 40.000 1.28 0.00 30.44 4.41
2137 2246 5.126061 ACCTTGATTCATTGGATAACACTGC 59.874 40.000 11.64 0.00 30.44 4.40
2138 2247 6.764308 ACCTTGATTCATTGGATAACACTG 57.236 37.500 11.64 0.00 0.00 3.66
2139 2248 8.328758 TCTAACCTTGATTCATTGGATAACACT 58.671 33.333 11.64 0.00 0.00 3.55
2140 2249 8.506168 TCTAACCTTGATTCATTGGATAACAC 57.494 34.615 11.64 0.00 0.00 3.32
2141 2250 8.956426 GTTCTAACCTTGATTCATTGGATAACA 58.044 33.333 11.64 0.00 0.00 2.41
2142 2251 8.956426 TGTTCTAACCTTGATTCATTGGATAAC 58.044 33.333 11.64 9.84 0.00 1.89
2143 2252 9.527157 TTGTTCTAACCTTGATTCATTGGATAA 57.473 29.630 11.64 0.00 0.00 1.75
2144 2253 8.956426 GTTGTTCTAACCTTGATTCATTGGATA 58.044 33.333 11.64 5.17 0.00 2.59
2145 2254 7.093771 GGTTGTTCTAACCTTGATTCATTGGAT 60.094 37.037 11.64 4.42 37.34 3.41
2146 2255 6.208599 GGTTGTTCTAACCTTGATTCATTGGA 59.791 38.462 11.64 0.00 37.34 3.53
2147 2256 6.389906 GGTTGTTCTAACCTTGATTCATTGG 58.610 40.000 1.70 5.10 37.34 3.16
2148 2257 6.389906 GGGTTGTTCTAACCTTGATTCATTG 58.610 40.000 8.55 0.00 40.15 2.82
2149 2258 5.480422 GGGGTTGTTCTAACCTTGATTCATT 59.520 40.000 8.55 0.00 40.15 2.57
2150 2259 5.016831 GGGGTTGTTCTAACCTTGATTCAT 58.983 41.667 8.55 0.00 40.15 2.57
2151 2260 4.141135 TGGGGTTGTTCTAACCTTGATTCA 60.141 41.667 8.55 0.00 40.15 2.57
2152 2261 4.403734 TGGGGTTGTTCTAACCTTGATTC 58.596 43.478 8.55 0.00 40.15 2.52
2153 2262 4.407365 CTGGGGTTGTTCTAACCTTGATT 58.593 43.478 8.55 0.00 40.15 2.57
2154 2263 3.814316 GCTGGGGTTGTTCTAACCTTGAT 60.814 47.826 8.55 0.00 40.15 2.57
2155 2264 2.488347 GCTGGGGTTGTTCTAACCTTGA 60.488 50.000 8.55 0.00 40.15 3.02
2156 2265 1.886542 GCTGGGGTTGTTCTAACCTTG 59.113 52.381 8.55 1.71 40.15 3.61
2157 2266 1.780919 AGCTGGGGTTGTTCTAACCTT 59.219 47.619 8.55 0.00 40.15 3.50
2158 2267 1.446016 AGCTGGGGTTGTTCTAACCT 58.554 50.000 8.55 0.00 40.15 3.50
2159 2268 2.305052 AGTAGCTGGGGTTGTTCTAACC 59.695 50.000 0.00 0.22 39.56 2.85
2160 2269 3.244457 ACAGTAGCTGGGGTTGTTCTAAC 60.244 47.826 0.00 0.00 35.51 2.34
2161 2270 2.976882 ACAGTAGCTGGGGTTGTTCTAA 59.023 45.455 0.00 0.00 35.51 2.10
2162 2271 2.616524 ACAGTAGCTGGGGTTGTTCTA 58.383 47.619 0.00 0.00 35.51 2.10
2163 2272 1.435256 ACAGTAGCTGGGGTTGTTCT 58.565 50.000 0.00 0.00 35.51 3.01
2164 2273 3.532542 GATACAGTAGCTGGGGTTGTTC 58.467 50.000 0.00 0.00 35.51 3.18
2165 2274 2.238898 GGATACAGTAGCTGGGGTTGTT 59.761 50.000 0.00 0.00 35.51 2.83
2166 2275 1.838077 GGATACAGTAGCTGGGGTTGT 59.162 52.381 0.00 0.00 35.51 3.32
2167 2276 1.141053 GGGATACAGTAGCTGGGGTTG 59.859 57.143 0.00 0.00 35.51 3.77
2168 2277 1.009675 AGGGATACAGTAGCTGGGGTT 59.990 52.381 0.00 0.00 35.51 4.11
2169 2278 0.642710 AGGGATACAGTAGCTGGGGT 59.357 55.000 0.00 0.00 35.51 4.95
2170 2279 2.696526 TAGGGATACAGTAGCTGGGG 57.303 55.000 0.00 0.00 35.51 4.96
2171 2280 6.681729 TTATTTAGGGATACAGTAGCTGGG 57.318 41.667 0.00 0.00 35.51 4.45
2172 2281 7.736893 AGTTTATTTAGGGATACAGTAGCTGG 58.263 38.462 0.00 0.00 35.51 4.85
2194 2303 9.979578 TGCATCAACTTTTCATAAACAATAGTT 57.020 25.926 0.00 0.00 40.40 2.24
2195 2304 9.979578 TTGCATCAACTTTTCATAAACAATAGT 57.020 25.926 0.00 0.00 0.00 2.12
2203 2312 8.934825 GGCTATTTTTGCATCAACTTTTCATAA 58.065 29.630 0.00 0.00 0.00 1.90
2204 2313 8.313292 AGGCTATTTTTGCATCAACTTTTCATA 58.687 29.630 0.00 0.00 0.00 2.15
2205 2314 7.163441 AGGCTATTTTTGCATCAACTTTTCAT 58.837 30.769 0.00 0.00 0.00 2.57
2206 2315 6.523840 AGGCTATTTTTGCATCAACTTTTCA 58.476 32.000 0.00 0.00 0.00 2.69
2207 2316 7.171337 TGAAGGCTATTTTTGCATCAACTTTTC 59.829 33.333 0.00 0.00 0.00 2.29
2208 2317 6.991531 TGAAGGCTATTTTTGCATCAACTTTT 59.008 30.769 0.00 0.00 0.00 2.27
2209 2318 6.523840 TGAAGGCTATTTTTGCATCAACTTT 58.476 32.000 0.00 0.00 0.00 2.66
2210 2319 6.100404 TGAAGGCTATTTTTGCATCAACTT 57.900 33.333 0.00 0.00 0.00 2.66
2211 2320 5.726980 TGAAGGCTATTTTTGCATCAACT 57.273 34.783 0.00 0.00 0.00 3.16
2212 2321 5.695816 TGTTGAAGGCTATTTTTGCATCAAC 59.304 36.000 19.75 19.75 46.61 3.18
2213 2322 5.851720 TGTTGAAGGCTATTTTTGCATCAA 58.148 33.333 0.00 0.00 36.32 2.57
2214 2323 5.465532 TGTTGAAGGCTATTTTTGCATCA 57.534 34.783 0.00 0.00 0.00 3.07
2215 2324 4.328169 GCTGTTGAAGGCTATTTTTGCATC 59.672 41.667 0.00 0.00 0.00 3.91
2216 2325 4.020839 AGCTGTTGAAGGCTATTTTTGCAT 60.021 37.500 0.00 0.00 37.00 3.96
2217 2326 3.321682 AGCTGTTGAAGGCTATTTTTGCA 59.678 39.130 0.00 0.00 37.00 4.08
2218 2327 3.917988 AGCTGTTGAAGGCTATTTTTGC 58.082 40.909 0.00 0.00 37.00 3.68
2219 2328 5.382618 AGAGCTGTTGAAGGCTATTTTTG 57.617 39.130 0.00 0.00 39.05 2.44
2220 2329 4.154918 CGAGAGCTGTTGAAGGCTATTTTT 59.845 41.667 0.00 0.00 39.05 1.94
2221 2330 3.686726 CGAGAGCTGTTGAAGGCTATTTT 59.313 43.478 0.00 0.00 39.05 1.82
2222 2331 3.265791 CGAGAGCTGTTGAAGGCTATTT 58.734 45.455 0.00 0.00 39.05 1.40
2223 2332 2.234908 ACGAGAGCTGTTGAAGGCTATT 59.765 45.455 4.85 0.00 39.05 1.73
2224 2333 1.827969 ACGAGAGCTGTTGAAGGCTAT 59.172 47.619 4.85 0.00 39.05 2.97
2225 2334 1.257743 ACGAGAGCTGTTGAAGGCTA 58.742 50.000 4.85 0.00 39.05 3.93
2226 2335 1.257743 TACGAGAGCTGTTGAAGGCT 58.742 50.000 4.85 0.00 41.88 4.58
2227 2336 2.080286 TTACGAGAGCTGTTGAAGGC 57.920 50.000 4.85 0.00 0.00 4.35
2228 2337 2.413453 GCTTTACGAGAGCTGTTGAAGG 59.587 50.000 4.85 0.00 37.18 3.46
2229 2338 2.413453 GGCTTTACGAGAGCTGTTGAAG 59.587 50.000 4.85 0.29 40.01 3.02
2230 2339 2.413837 GGCTTTACGAGAGCTGTTGAA 58.586 47.619 4.85 0.00 40.01 2.69
2231 2340 1.668919 CGGCTTTACGAGAGCTGTTGA 60.669 52.381 4.85 0.00 40.75 3.18
2232 2341 0.716108 CGGCTTTACGAGAGCTGTTG 59.284 55.000 0.00 0.00 40.75 3.33
2233 2342 0.389948 CCGGCTTTACGAGAGCTGTT 60.390 55.000 13.98 0.00 43.43 3.16
2234 2343 1.215647 CCGGCTTTACGAGAGCTGT 59.784 57.895 13.98 0.00 43.43 4.40
2235 2344 0.108804 TTCCGGCTTTACGAGAGCTG 60.109 55.000 0.00 10.03 44.32 4.24
2236 2345 0.606604 TTTCCGGCTTTACGAGAGCT 59.393 50.000 0.00 0.00 40.01 4.09
2237 2346 1.435577 TTTTCCGGCTTTACGAGAGC 58.564 50.000 0.00 0.00 39.41 4.09
2238 2347 4.680171 AATTTTTCCGGCTTTACGAGAG 57.320 40.909 0.00 0.00 35.47 3.20
2239 2348 5.930405 GTAAATTTTTCCGGCTTTACGAGA 58.070 37.500 0.00 0.00 35.47 4.04
2243 2352 4.082841 TCCCGTAAATTTTTCCGGCTTTAC 60.083 41.667 14.63 5.15 39.12 2.01
2244 2353 4.077822 TCCCGTAAATTTTTCCGGCTTTA 58.922 39.130 14.63 0.00 39.12 1.85
2245 2354 2.892215 TCCCGTAAATTTTTCCGGCTTT 59.108 40.909 14.63 0.00 39.12 3.51
2246 2355 2.516906 TCCCGTAAATTTTTCCGGCTT 58.483 42.857 14.63 0.00 39.12 4.35
2247 2356 2.203470 TCCCGTAAATTTTTCCGGCT 57.797 45.000 14.63 0.00 39.12 5.52
2248 2357 2.223641 GGATCCCGTAAATTTTTCCGGC 60.224 50.000 14.63 5.28 39.12 6.13
2249 2358 3.284617 AGGATCCCGTAAATTTTTCCGG 58.715 45.455 8.55 13.62 40.12 5.14
2250 2359 4.495184 CGAAGGATCCCGTAAATTTTTCCG 60.495 45.833 8.55 0.00 0.00 4.30
2251 2360 4.916870 CGAAGGATCCCGTAAATTTTTCC 58.083 43.478 8.55 0.00 0.00 3.13
2276 2385 2.732619 CCGGGAGGCTCCAGGTAAC 61.733 68.421 36.08 17.86 45.36 2.50
2277 2386 2.365105 CCGGGAGGCTCCAGGTAA 60.365 66.667 36.08 0.00 45.36 2.85
2296 2405 3.480133 CTAGCCGGGGGTTCTGGG 61.480 72.222 2.18 0.00 42.30 4.45
2297 2406 4.176752 GCTAGCCGGGGGTTCTGG 62.177 72.222 2.29 0.00 44.90 3.86
2298 2407 4.176752 GGCTAGCCGGGGGTTCTG 62.177 72.222 20.16 0.00 0.00 3.02
2299 2408 4.416601 AGGCTAGCCGGGGGTTCT 62.417 66.667 27.83 4.96 41.95 3.01
2300 2409 3.862991 GAGGCTAGCCGGGGGTTC 61.863 72.222 27.83 15.02 41.95 3.62
2304 2413 3.866582 CTTGGAGGCTAGCCGGGG 61.867 72.222 27.83 13.47 41.95 5.73
2305 2414 4.554036 GCTTGGAGGCTAGCCGGG 62.554 72.222 27.83 16.95 41.95 5.73
2306 2415 2.543067 AAAGCTTGGAGGCTAGCCGG 62.543 60.000 27.83 16.63 42.24 6.13
2307 2416 1.078143 AAAGCTTGGAGGCTAGCCG 60.078 57.895 27.83 14.40 42.24 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.