>input_sequence_83758
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-----------------------------------------------ATGTCCAAGGCACGCAACGCCTTAGTTGTCACT
GGGTTGGTGATCTTTGCTGGTACTGGCCTAGCATTTCCCTTCTACTTTGTGTAAGTGAGTTTGT-TTCTCATCTTTCTAA
CACTGGTTGAGAAACGTAGATAGACATGTCGTGTGCATTGGCTGGCATTTCTTTCTGTAACCTTTATCCATTTCTTACC-
CCCAGGAAATCAAAGAACAGGCCTATTATTGATTCAACGAAGCCTCTGCCACCGCAGGCTACTTTCCGAGGACCGTATGT
GAACACTGGATCGCGCGACATAGGGCCTGATCACACCGAGTACCCCAAGAAGTGA-------------------------
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>chr7D_1_TraesCS7D01G133000
TGGGGGAAAGAGGGGAAGCGCCGTATACAGATCGCCTTTGCTTGC-TGCAGCGCCGGCCGCCACAACGGCGCCGCCGCCG
GGCCCCTGCTCTAGGCACC-GGTTGGAGGAGGTCACTGCAGATGTGGGATTCAGAGATTGCATAGTTCAGTTAGAATGTT
GTGTGATCAGTTCCACTCATGAAAACGAAATTCGGGGCCTGTGCTCCTTTGGGTTTCTTGAAAAAGA--A--AAAAAAAG
TTCAGTTAGAATTGTTGAGATCCA---ATTTTCTTCCCTATGGAAGTTCAGG----------------------------
-AACCTGGTGT-----CTGAAGAAACGTTT------CTTCAGACTAAGCAAGTTACTTTACTTCTTACAGTTACAAGACT
TTGTTTCGAGCGATGGTGA--AGCTTTCATGTTGACG----TCGGTGCGGTCT--TTGTAGTTCGTTGCAGACTTGCAGG
GTTCGATCTCTGTTAATTATTCATCTATGCGATCTGGGGTCTGGATGTATAGTGATGAAGCTGGCAATTTAGCACCCTGC
TTGCTAATACTTGCTACTGTCCTTCTGCCGATCTGTTATTAGTTACTACTGTTATGGAGTATCCTAGGATGCTAGCATGT
AACCATACTGATCTGTATGGTGATAACATAACTTTTTTT-CAAC-------TAGTTTGTTTACTCCATTTTTGGGACAAA
GGCAGGCAGGCCCTCTACTGATTTCATTAAGAGAAAGAGTAGCAGGTTCAATATTTGAATTCT----TT-CTCTTGTTGC
TTTCTGGGTTTCAGAGTCTGGT-----------AGCAGGATTCAGTTTAAGTTTGATTCAAGGCGTAAAAGCGAAATTTA
AAATCAGCTTTTCCTTATTATCATTTACTTAACGGAAATGGGGAAAATCTGGTGAGATGCTTGTTGCTAAGT------TA
CCTTCTAACGGCCTAATGTGCCAATACTTTTCTATATCACGTTCAAAGAAAAACAGAGGTTTTGTGGCATTACCTATCCT
GAATTAATTTCTCTTGTTTTTATCTTGGCAGTTTCTAAAACAATCACATGTCCAAGGCACGCAACGCCTTAGTTGTCACT
GGGTTGGTGATCTTTGCTGGTACTGGCCTAGCATTTCCCTTCTACTTTGTGTAAGTGAGTTTGT-TTCTCATCTTTCTAA
CACTGGTTGAGAAACGTAGATAGACATGTCGTGTGCATTGGCTGGCATTTCTTTCTGTAACCTTTATCCATTTCTTACC-
CCCAGGAAATCAAAGAACAGGCCTATTATTGATTCAACGAAGCCTCTGCCACCGCAGGCTACTTTCCGAGGACCGTATGT
GAACACTGGATCGCGCGACATAGGGCCTGATCACACCGAGTACCCCAAGAAGTGATATGTATTTCCATCTTGTTTTCTCT
TTGTTTTCAGT-GGGCATGCAGAAAACCAG-------TGAGTGGAACCCTGTAATGCTGATTTAATAGCGAGGTGGTGAT
AATCGGCTCGTGATGCTGGGCAACGCGATTGCAGTGC---ATTAGCTTCGGTTTC--------AGGTGTTATGTGCAGAG
CACATGCATATGTACGCAGTTCTTCATGAATTGTAGGCTCTTTTGATCGTTTCCTGTGCTCCAGTGACTATTCCTTCCAA
AGCGTTGTGCCGCTATAGGCTATACCTATGTTAGGCAATAAAAAAAATGTTGGGTTTGCGTTGCTGAAGGTGTGAGGCCA
TAAATGATACTCCCTCCTTTTCATACTACTCCCTCCTTTTCTAAATATATGATGTTTTGGTAGTTCAAACTGAACTATCA
AAACGTCGTACATTTAGGAATGGAGGGAGTATATTAATTTCGTATTAATTCGAACTTTATGAGAGCCAATTTCTAGAAAA
AAAATATCAACATCTAAAGTACCAATAAATACAGTATGAAATTATGTTTTTTGCAGGAATATGAAAAAATGTTCCACAAC
GTATCTAATGATATTTTTGGTATTGTGAATGTTGTTTCTTTAAACCTAGTCAAACTTCACTAATTTTGAACTACAACAAA
ACTAATATGTGAAAATATGAAACAGATGGAGTACGGTAAAAAGTAAAATGATCATAATCAAGACTAAGAAGGTTTGTTAA
CAGTACTATTTTGTTGCTCTTATTAATATTTTCTTAATTTAGTTTGGACAGGGGAGCTAGGTTTTACACTGATGCCCAGA
GCCTTGCAGTGTTATCCAATGAATCAAGGTTAGAACAACCCCAGCTACTGTATCCCTAAATAAACTATTGTTTATGAAAA
GTTGATGCAAAAATAGCCTTCAACAGCTCTCGTAAAGCCGGAAAAATTTACGGGATCCTTCGGAGTTACCTGGAGCCTCC
CGGGCCCAGAACCCCCGGCTAGCCTCCAAGCTTT
>chr7B_2
GGGGA-AAATAGGGGCAGAGCCGTAGACAGATCGCCTTTGCTTGCCTGCAGCTCCGGTTGCCACAACAGCGGCGCCGCCG
GGCCCCTGTTCTAGGCGCC-GGTTGGAGGAGGTCACTGCAGATGTGGGATTCAGAGAATGCATAGTTCAGTTAGAATGTT
GTGTTATCAGTTCCACTCATGAAAATGAAATTAGGGGCCTGTGCTCCTTTGGGTTTCTTGAAAAAAGAGGGGAAAAAAAG
TTCAGTTAGGATTGTTGAGATCCA---GTTTTCTTCCGTATGGAAGTTTAGG----------------------------
-AACCCGGAGT-----CTGAAGAAACGTTT------CTTCAGACTAAGCGAGTTACTTTACTTCTTACAGTTACAAGGCT
TCATTTCGAGCGATGGTGATAAGCTTTCATGTTGACTGACATCAGTGCGATCT--TTGTAGTTCGTC--------GAAGG
GTTCGATCTCTGTTAATTATTCATATATGTGATCTGGGGTCTTGGTATATAGTGTTGAAGCTGGCAATTTAGCATCCTGC
TTCCTAATACTTGTTACTGTCCTTCTGCCGATCCATTGTTAGTTAGTACTGCTATGGAGTATCCAAGGGTGCTAGCATGT
AACCGTGCTGATTTTTATGGTGATAAGATGACCTT--TTTCAACTACTCCGTAGTTTGTTTACTCTATTTTGGGGGCCAA
GGCAGACGGGCACTCTACTGATTTCATTAAGAGAAAGAGTAGCAGGTTCAGTATTTGTCGAAAATTCTT-CTCTTGTTAC
TTTCTGGGTTTCAGAGTCTGGTGGACGCATGTCAGCAGGATTCAGTTTAAGTTTGATTCGAGGCGTAAAAGGGCAATTTA
AAATCAGATTTCGCTTATTATCATTTACTTAACGGAAATGGTGAAAATCTGTTGAGATGCTTGTCGCTG-GT------TA
CCTTCTGATGGCCTAATGTGTCCATGCTTTTCTATATCACGTTCGAAGGAAAACAGAGGTTTTGTGGCACTACCTATCCT
GAATTAATTCTTCTTC-----ATCTTGACAGTTTCTAAAACAATCACATGTCCAAGGCACGCAACGCCTTAGTTGTCACT
GGCTTGGTAATATTTGCTGGCTCTGGCCTAGCATTTCCCTTCTACTTTGTGTAAGT----TTGTTTTCTCATCTTTCTAG
CACTGGTTGAGAAAGGTAGATAAACGTGTTGTGTGCATTGGCTAGCGTTTTTTTGTGTAACCTTTGTCCATTTCTTACAT
CCCAGGAAATCAAAGAACAGGCCTATTATCGACTCAACGAAGCCTCTGCCACCGCAGGCTACTTTCCGAGGACCATATGT
GAACACTGGATCGCGCGACATAGGGCCTGATCACACCGAGTACCCCAAGAAGTGATATGTATTTTCATCTTGTTTTCTCT
TTGTTTTTCAACGGGCATGCAGAAAGCCAG-------TGAGTGGAAACCTGTAATGTTG-------------------AT
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>chr7A_72
------------------------------------------------------------------------CGCCGGCA
GCCCCCTGGTCTAGGCGCCGGGTTGGAGGAGGTCACTGCAGATGTGGGATTCAGAGAATGTATAGTTCAGTTAGAATGTT
GTGTT-----------TCATGAAAATGGAATTGGGGGCCTGCGCTCCTTT-----TCTCGAAAAATG-------AAATAG
TTCAGTTAGAATTGTTGAGATCCATTTAATTTTTTCCCTATGGAAGTTTTAGGAGCCCGGAGCCAGTGCACTGCCACCTC
TAACCCGGAGTCCGAACTGAAGAAACGTTTCTGTTCCTTCAGACTAAGTAAGTTAATT-----------GTTACAAGACT
TTGTTTCGAGCGATGGTGATAAGCTTTCATGTTTCACGTTGCTGTCAATGCCATCTTGTAGTTTGTC--------AGAGG
GTTCGATCTCCGTTAATTATTCATCTATGCTATCTGGGGTCTTGGTATATGGCGATGAAGCTGCCAATCTAGCATCCTGC
TTGCTAATACTTGTTACTGGCCTTCTGCCGATCTGTTATTAGTTACTGCTGTTATGG-----------------------
-----TACTGATTTTTATGGTCATAAGATAACTTT--TT-CAAC-------TAGTTTGTTTACTCTATTTTTGGGGCGAA
GGCAGACTGGCGCTCTACTGATTTCATTAAGAGAACGAGTAGCAGGTCCATTATTTATCCAAAATTCTTTCTCTTGTAAC
TTTCTGGGGTTCAGACTCATA----------TCAGCAGGATTCAGTTTAAGTTTAATTCGAGGCGTACAAGTGCAATTTA
AAATCAGCTTTTGCTTATTATCATTTACTTAATGGAAAAGGGGGAAACCTA-TGAGATGCTTGTTGCTA-GTTAGGAGTA
CCTTCTGATGGCCTAATGTGCCAATGCTTTGCTATATCACGTTCAAAGGAAAACAGAGGTTTTGTGGCACGACCTTACCT
GAATTAATTCTTCTTCCTTT-ATCTTGACAGTTTCTAAAACAATCACATGTCTAAGGCACGCAACGCCTTAGTTGTCACT
GGCTTGGTGATCTTTGCTGGTACCGGCCTAGCATTTCCCTTCTACTTTGTGTAAGTGAGTTTGTTTTCTCATCTTTCTAG
CACTGGTTG----------------------TGTGCATTGGCTGGCGTCTCTTTGCGTAACCTTTATCCATTTCTTACC-
CCCAGGAAATCAAAGAACAGGCCTATTATCGATTCAACGAAGCCTCTGCCACCGCAGGCTACTTTCCGAGGACCGTATGT
GAACACTGGATCGCGCGACATAGGGCCTGATCACACCGAGTACCCCAAGAAGTGATATGTATTTCCATCTTGTTTTCTCT
TTGTTTTTCAACGGGCATGCAGAAAACCAGTGAGTTCTGAGTGGAACCCTGTAATGTTG-------------------AT
AACCGGCTCGTGATGTTGGGCAACGCAATTGCTGTGGTAGATTAGCTTCGGTTTGAGCCTTTGAGGTGTTATGTGCAGAA
CACATGCATATGAGCGTAGTTCTTCCTGAACTGTAAGCGCTTTTGATCATTTCTTGTGCTCCAGTGATTATTCCTTGCAA
AGCGATGTGCTGCTGTA---------------------------------------------------------------
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>chr1B_128
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-------------------------------------------------TTCGGAGAATGCATAGTTCAGTTAGAATGTT
GTGTTGTCAGTTCCACTCATGAAAACGAAATTCGGGGCCTGTGCTCCTTTGGGTTTCCTGAAAAAAGATA--AAAGAAAG
TTCGGTTAGGATTGTTGAGATCCA---ATTTTCTTCTGAATGGAAGTTTAGG----------------------------
-AACCCGGAGT-----CTGAAGAAACGTTG------CTTCAGACTAAGAAAGTTAGTTTGCTTCTTACAGTTACAAGACT
TCATTTCGAGCAATGGTGATAAGCTTTCATGTTGACCGACATCAGTGCGATCT--TTGTAGTTTGTC--------GCAGG
GTTCGATCTCTGTTAATTATTCATATATGTGATCTGGGGTCTTGGTATATAGTGTTGAAGCCGGCGATTTAGCATCCTGC
TTCCTAATACTTGTTACTGTCCTTCTGCCGATCCATTGTTAGTTAGTACTGTTATGGAGCATCCGAGGGTGCTAGCCTGT
AACCATACTGATTTTTATGGTGATAAGATGACCTT--TTTCAAC-------TAGTTTGTTTACTCTGTTTTCAGGACAAA
GGCAGCA-GGTGCTCTACTGACCTCATTAAGATAAAGGGTAGCAGGTTCAGTATTTGTCGAAAATTCTTTCTCTTGTT--
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>SNPs
S---SS---S-----S--S------S--------------------------S----SS--------S---S--------
--------S-------S----------------------------------------S----------------------
----S------------------------------------------------------------SS-------------
------------------------------------------------S-------------------------------
-----S--S-----------------------------------------------------------------------
------------------------------------S-----------------------------SSSSSSSSS-----
------------------------------------------S-S-S---------------------------S-----
-------------S--------------------------------------------------S---S-----------
------------S-S-----------S--------SS----------------------------S--------------
-----S-S---S--------------------------------------S------SSSSSS---------------S-
-----------------------------------------------------------S-----------S-S------
------------S--------------------------------------S-----------------S----------
------S-S----------------S----------------------S--------------------S----------
---------SS----SS---S------S----------------------------------------------------
--S----------------------------------------------------------------------------S
--------------S-------S--S---S----------------S-------S-------------------------
-----------------------------S--------------------------------------------------
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-------SSSS---------------------------------------------S--SSSSSSSSSSSSSSSSSSS--
--S------------S----------S-----S---S-----------------S------------------------S
------------SS--S--------S----S----S--S---------S----S-------------S--------S---
----S-----S---S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_525
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-------------------------TATGCGATCTGGGGTCTGGA-----------------------------------
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>reverse_2235
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--------------------------------------------------------------------------CCCAGA
GCCTTGCAGTGTTA------------------------------------------------------------------
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