Multiple sequence alignment - TraesCS7D01G132700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G132700 chr7D 100.000 1725 0 0 1 1725 83867304 83869028 0.000000e+00 3186.0
1 TraesCS7D01G132700 chr7D 100.000 740 0 0 1957 2696 83869260 83869999 0.000000e+00 1367.0
2 TraesCS7D01G132700 chr7D 97.143 35 1 0 448 482 83867686 83867720 2.900000e-05 60.2
3 TraesCS7D01G132700 chr7D 97.143 35 1 0 383 417 83867751 83867785 2.900000e-05 60.2
4 TraesCS7D01G132700 chr7B 94.141 1007 35 11 722 1714 33597278 33598274 0.000000e+00 1511.0
5 TraesCS7D01G132700 chr7B 92.500 360 18 6 1960 2317 33598288 33598640 8.610000e-140 507.0
6 TraesCS7D01G132700 chr7B 87.395 357 25 10 2331 2686 33598709 33599046 2.520000e-105 392.0
7 TraesCS7D01G132700 chr7B 90.805 87 6 2 645 729 33596816 33596902 6.100000e-22 115.0
8 TraesCS7D01G132700 chr7A 91.049 1106 58 24 640 1725 85437060 85438144 0.000000e+00 1456.0
9 TraesCS7D01G132700 chr7A 85.981 749 59 23 1957 2696 85438151 85438862 0.000000e+00 760.0
10 TraesCS7D01G132700 chr5B 86.207 58 6 2 585 641 594687204 594687260 8.060000e-06 62.1
11 TraesCS7D01G132700 chr2D 77.885 104 16 7 542 642 579381082 579380983 1.040000e-04 58.4
12 TraesCS7D01G132700 chr2D 100.000 29 0 0 614 642 579378077 579378049 1.000000e-03 54.7
13 TraesCS7D01G132700 chr2A 77.885 104 16 7 542 642 717006675 717006576 1.040000e-04 58.4
14 TraesCS7D01G132700 chr5D 90.476 42 4 0 614 655 456591518 456591559 3.750000e-04 56.5
15 TraesCS7D01G132700 chr5A 100.000 28 0 0 614 641 338391510 338391537 5.000000e-03 52.8
16 TraesCS7D01G132700 chr5A 96.774 31 1 0 611 641 419678656 419678686 5.000000e-03 52.8
17 TraesCS7D01G132700 chr1A 100.000 28 0 0 615 642 114063793 114063766 5.000000e-03 52.8
18 TraesCS7D01G132700 chr1A 100.000 28 0 0 614 641 308950468 308950441 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G132700 chr7D 83867304 83869999 2695 False 1168.35 3186 98.57150 1 2696 4 chr7D.!!$F1 2695
1 TraesCS7D01G132700 chr7B 33596816 33599046 2230 False 631.25 1511 91.21025 645 2686 4 chr7B.!!$F1 2041
2 TraesCS7D01G132700 chr7A 85437060 85438862 1802 False 1108.00 1456 88.51500 640 2696 2 chr7A.!!$F1 2056

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.034337 TCGGGAAGTTGAAACCTCGG 59.966 55.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1957 2367 0.030705 TCTGATCTCTGGGAAGGGGG 60.031 60.0 0.0 0.0 0.0 5.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.151308 TGGATGTGTTTTTGATGTTTATGACC 58.849 34.615 0.00 0.00 0.00 4.02
26 27 7.151308 GGATGTGTTTTTGATGTTTATGACCA 58.849 34.615 0.00 0.00 0.00 4.02
27 28 7.655328 GGATGTGTTTTTGATGTTTATGACCAA 59.345 33.333 0.00 0.00 0.00 3.67
28 29 8.954950 ATGTGTTTTTGATGTTTATGACCAAA 57.045 26.923 0.00 0.00 0.00 3.28
29 30 8.190888 TGTGTTTTTGATGTTTATGACCAAAC 57.809 30.769 0.00 0.00 38.60 2.93
34 35 6.471233 TTGATGTTTATGACCAAACACCAA 57.529 33.333 4.74 4.74 45.41 3.67
35 36 7.060383 TTGATGTTTATGACCAAACACCAAT 57.940 32.000 4.74 0.00 43.67 3.16
36 37 7.151308 TTGATGTTTATGACCAAACACCAATC 58.849 34.615 4.74 0.44 43.67 2.67
37 38 5.114785 TGTTTATGACCAAACACCAATCG 57.885 39.130 0.00 0.00 42.08 3.34
38 39 4.580995 TGTTTATGACCAAACACCAATCGT 59.419 37.500 0.00 0.00 42.08 3.73
39 40 5.763698 TGTTTATGACCAAACACCAATCGTA 59.236 36.000 0.00 0.00 42.08 3.43
40 41 6.431543 TGTTTATGACCAAACACCAATCGTAT 59.568 34.615 0.00 0.00 42.08 3.06
41 42 7.606839 TGTTTATGACCAAACACCAATCGTATA 59.393 33.333 0.00 0.00 42.08 1.47
42 43 8.617809 GTTTATGACCAAACACCAATCGTATAT 58.382 33.333 0.00 0.00 38.13 0.86
43 44 9.833917 TTTATGACCAAACACCAATCGTATATA 57.166 29.630 0.00 0.00 0.00 0.86
44 45 7.724305 ATGACCAAACACCAATCGTATATAC 57.276 36.000 2.53 2.53 0.00 1.47
45 46 6.880484 TGACCAAACACCAATCGTATATACT 58.120 36.000 11.05 0.00 0.00 2.12
46 47 6.982141 TGACCAAACACCAATCGTATATACTC 59.018 38.462 11.05 0.00 0.00 2.59
47 48 6.285990 ACCAAACACCAATCGTATATACTCC 58.714 40.000 11.05 0.00 0.00 3.85
48 49 6.126997 ACCAAACACCAATCGTATATACTCCA 60.127 38.462 11.05 0.00 0.00 3.86
49 50 6.934645 CCAAACACCAATCGTATATACTCCAT 59.065 38.462 11.05 0.00 0.00 3.41
50 51 8.092068 CCAAACACCAATCGTATATACTCCATA 58.908 37.037 11.05 0.00 0.00 2.74
51 52 9.653287 CAAACACCAATCGTATATACTCCATAT 57.347 33.333 11.05 0.00 34.14 1.78
52 53 9.871238 AAACACCAATCGTATATACTCCATATC 57.129 33.333 11.05 0.00 31.96 1.63
53 54 8.824756 ACACCAATCGTATATACTCCATATCT 57.175 34.615 11.05 0.00 31.96 1.98
54 55 9.256228 ACACCAATCGTATATACTCCATATCTT 57.744 33.333 11.05 0.00 31.96 2.40
68 69 8.388484 ACTCCATATCTTTGTATGAATTGAGC 57.612 34.615 0.00 0.00 34.67 4.26
69 70 8.216423 ACTCCATATCTTTGTATGAATTGAGCT 58.784 33.333 0.00 0.00 34.67 4.09
70 71 9.716531 CTCCATATCTTTGTATGAATTGAGCTA 57.283 33.333 0.00 0.00 34.67 3.32
71 72 9.716531 TCCATATCTTTGTATGAATTGAGCTAG 57.283 33.333 0.00 0.00 34.67 3.42
72 73 8.944029 CCATATCTTTGTATGAATTGAGCTAGG 58.056 37.037 0.00 0.00 34.67 3.02
73 74 9.499479 CATATCTTTGTATGAATTGAGCTAGGT 57.501 33.333 0.00 0.00 34.67 3.08
75 76 7.849804 TCTTTGTATGAATTGAGCTAGGTTC 57.150 36.000 0.00 0.00 0.00 3.62
76 77 7.394016 TCTTTGTATGAATTGAGCTAGGTTCA 58.606 34.615 8.90 8.90 35.33 3.18
77 78 8.049117 TCTTTGTATGAATTGAGCTAGGTTCAT 58.951 33.333 18.30 18.30 42.24 2.57
78 79 8.579850 TTTGTATGAATTGAGCTAGGTTCATT 57.420 30.769 19.04 5.86 40.59 2.57
79 80 8.579850 TTGTATGAATTGAGCTAGGTTCATTT 57.420 30.769 19.04 6.66 40.59 2.32
80 81 8.579850 TGTATGAATTGAGCTAGGTTCATTTT 57.420 30.769 19.04 5.33 40.59 1.82
81 82 9.023962 TGTATGAATTGAGCTAGGTTCATTTTT 57.976 29.630 19.04 5.06 40.59 1.94
100 101 4.957684 TTTTTCTCTCTCTCGGGAAGTT 57.042 40.909 0.00 0.00 0.00 2.66
101 102 3.944055 TTTCTCTCTCTCGGGAAGTTG 57.056 47.619 0.00 0.00 0.00 3.16
102 103 2.881111 TCTCTCTCTCGGGAAGTTGA 57.119 50.000 0.00 0.00 0.00 3.18
103 104 3.156288 TCTCTCTCTCGGGAAGTTGAA 57.844 47.619 0.00 0.00 0.00 2.69
104 105 3.497332 TCTCTCTCTCGGGAAGTTGAAA 58.503 45.455 0.00 0.00 0.00 2.69
105 106 3.256136 TCTCTCTCTCGGGAAGTTGAAAC 59.744 47.826 0.00 0.00 0.00 2.78
106 107 2.299297 TCTCTCTCGGGAAGTTGAAACC 59.701 50.000 0.00 0.00 0.00 3.27
107 108 2.300437 CTCTCTCGGGAAGTTGAAACCT 59.700 50.000 0.00 0.00 0.00 3.50
108 109 2.299297 TCTCTCGGGAAGTTGAAACCTC 59.701 50.000 0.00 0.00 0.00 3.85
109 110 1.000506 TCTCGGGAAGTTGAAACCTCG 59.999 52.381 0.00 0.00 0.00 4.63
110 111 0.034337 TCGGGAAGTTGAAACCTCGG 59.966 55.000 0.00 0.00 0.00 4.63
111 112 0.250166 CGGGAAGTTGAAACCTCGGT 60.250 55.000 0.00 0.00 0.00 4.69
112 113 1.001181 CGGGAAGTTGAAACCTCGGTA 59.999 52.381 0.00 0.00 0.00 4.02
113 114 2.420642 GGGAAGTTGAAACCTCGGTAC 58.579 52.381 0.00 0.00 0.00 3.34
114 115 2.038164 GGGAAGTTGAAACCTCGGTACT 59.962 50.000 0.00 0.00 0.00 2.73
115 116 3.064931 GGAAGTTGAAACCTCGGTACTG 58.935 50.000 0.00 0.00 0.00 2.74
116 117 2.833631 AGTTGAAACCTCGGTACTGG 57.166 50.000 0.85 0.31 0.00 4.00
117 118 2.322658 AGTTGAAACCTCGGTACTGGA 58.677 47.619 0.85 0.00 0.00 3.86
118 119 2.299297 AGTTGAAACCTCGGTACTGGAG 59.701 50.000 0.85 4.78 0.00 3.86
119 120 2.005370 TGAAACCTCGGTACTGGAGT 57.995 50.000 0.85 0.00 0.00 3.85
120 121 2.322658 TGAAACCTCGGTACTGGAGTT 58.677 47.619 0.85 3.29 0.00 3.01
121 122 2.298163 TGAAACCTCGGTACTGGAGTTC 59.702 50.000 0.85 6.42 0.00 3.01
122 123 2.005370 AACCTCGGTACTGGAGTTCA 57.995 50.000 0.85 0.00 0.00 3.18
123 124 2.005370 ACCTCGGTACTGGAGTTCAA 57.995 50.000 0.85 0.00 0.00 2.69
124 125 1.893801 ACCTCGGTACTGGAGTTCAAG 59.106 52.381 0.85 0.00 0.00 3.02
125 126 1.893801 CCTCGGTACTGGAGTTCAAGT 59.106 52.381 0.85 0.00 0.00 3.16
126 127 2.299297 CCTCGGTACTGGAGTTCAAGTT 59.701 50.000 0.85 0.00 0.00 2.66
127 128 3.508793 CCTCGGTACTGGAGTTCAAGTTA 59.491 47.826 0.85 0.00 0.00 2.24
128 129 4.159879 CCTCGGTACTGGAGTTCAAGTTAT 59.840 45.833 0.85 0.00 0.00 1.89
129 130 5.359009 CCTCGGTACTGGAGTTCAAGTTATA 59.641 44.000 0.85 0.00 0.00 0.98
130 131 6.040616 CCTCGGTACTGGAGTTCAAGTTATAT 59.959 42.308 0.85 0.00 0.00 0.86
131 132 7.230108 CCTCGGTACTGGAGTTCAAGTTATATA 59.770 40.741 0.85 0.00 0.00 0.86
132 133 7.934457 TCGGTACTGGAGTTCAAGTTATATAC 58.066 38.462 0.85 0.00 0.00 1.47
133 134 7.776969 TCGGTACTGGAGTTCAAGTTATATACT 59.223 37.037 0.85 0.00 39.32 2.12
137 138 8.494016 ACTGGAGTTCAAGTTATATACTTTGC 57.506 34.615 0.00 0.00 44.73 3.68
138 139 8.100791 ACTGGAGTTCAAGTTATATACTTTGCA 58.899 33.333 0.00 0.00 44.73 4.08
139 140 9.113838 CTGGAGTTCAAGTTATATACTTTGCAT 57.886 33.333 0.00 0.00 44.73 3.96
140 141 8.892723 TGGAGTTCAAGTTATATACTTTGCATG 58.107 33.333 0.00 0.00 44.73 4.06
141 142 9.109393 GGAGTTCAAGTTATATACTTTGCATGA 57.891 33.333 0.00 0.00 44.73 3.07
143 144 9.672673 AGTTCAAGTTATATACTTTGCATGAGT 57.327 29.630 0.00 8.16 44.73 3.41
144 145 9.708222 GTTCAAGTTATATACTTTGCATGAGTG 57.292 33.333 12.17 0.00 44.73 3.51
145 146 7.919690 TCAAGTTATATACTTTGCATGAGTGC 58.080 34.615 12.17 0.00 44.73 4.40
147 148 7.721286 AGTTATATACTTTGCATGAGTGCTC 57.279 36.000 12.17 0.00 42.60 4.26
148 149 6.708054 AGTTATATACTTTGCATGAGTGCTCC 59.292 38.462 12.17 0.00 42.60 4.70
149 150 7.419518 AGTTATATACTTTGCATGAGTGCTCCT 60.420 37.037 12.17 0.83 42.60 3.69
156 157 2.886862 CATGAGTGCTCCTACTCCAG 57.113 55.000 0.00 0.00 45.07 3.86
157 158 2.106566 CATGAGTGCTCCTACTCCAGT 58.893 52.381 0.00 0.00 45.07 4.00
158 159 1.550327 TGAGTGCTCCTACTCCAGTG 58.450 55.000 0.00 0.00 45.07 3.66
159 160 0.820871 GAGTGCTCCTACTCCAGTGG 59.179 60.000 1.40 1.40 40.92 4.00
160 161 0.409876 AGTGCTCCTACTCCAGTGGA 59.590 55.000 12.40 12.40 0.00 4.02
161 162 1.007721 AGTGCTCCTACTCCAGTGGAT 59.992 52.381 13.56 5.85 0.00 3.41
162 163 1.834263 GTGCTCCTACTCCAGTGGATT 59.166 52.381 13.56 10.11 0.00 3.01
163 164 2.237392 GTGCTCCTACTCCAGTGGATTT 59.763 50.000 13.56 5.45 0.00 2.17
164 165 2.237143 TGCTCCTACTCCAGTGGATTTG 59.763 50.000 13.56 8.18 0.00 2.32
165 166 2.501723 GCTCCTACTCCAGTGGATTTGA 59.498 50.000 13.56 6.78 0.00 2.69
166 167 3.055094 GCTCCTACTCCAGTGGATTTGAA 60.055 47.826 13.56 0.00 0.00 2.69
167 168 4.384647 GCTCCTACTCCAGTGGATTTGAAT 60.385 45.833 13.56 0.00 0.00 2.57
168 169 5.102953 TCCTACTCCAGTGGATTTGAATG 57.897 43.478 13.56 1.12 0.00 2.67
169 170 4.080356 TCCTACTCCAGTGGATTTGAATGG 60.080 45.833 13.56 8.47 0.00 3.16
170 171 3.814504 ACTCCAGTGGATTTGAATGGT 57.185 42.857 13.56 1.01 32.68 3.55
171 172 3.424703 ACTCCAGTGGATTTGAATGGTG 58.575 45.455 13.56 0.00 32.68 4.17
172 173 3.074390 ACTCCAGTGGATTTGAATGGTGA 59.926 43.478 13.56 0.00 32.68 4.02
173 174 4.264083 ACTCCAGTGGATTTGAATGGTGAT 60.264 41.667 13.56 0.00 32.68 3.06
174 175 4.676109 TCCAGTGGATTTGAATGGTGATT 58.324 39.130 8.12 0.00 32.68 2.57
175 176 4.706476 TCCAGTGGATTTGAATGGTGATTC 59.294 41.667 8.12 0.00 38.85 2.52
176 177 4.708421 CCAGTGGATTTGAATGGTGATTCT 59.292 41.667 1.68 0.00 39.10 2.40
177 178 5.393787 CCAGTGGATTTGAATGGTGATTCTG 60.394 44.000 1.68 0.00 39.10 3.02
178 179 5.184479 CAGTGGATTTGAATGGTGATTCTGT 59.816 40.000 0.00 0.00 39.10 3.41
179 180 5.184479 AGTGGATTTGAATGGTGATTCTGTG 59.816 40.000 0.00 0.00 39.10 3.66
180 181 4.463539 TGGATTTGAATGGTGATTCTGTGG 59.536 41.667 0.00 0.00 39.10 4.17
181 182 4.706476 GGATTTGAATGGTGATTCTGTGGA 59.294 41.667 0.00 0.00 39.10 4.02
182 183 5.361857 GGATTTGAATGGTGATTCTGTGGAT 59.638 40.000 0.00 0.00 39.10 3.41
183 184 5.902613 TTTGAATGGTGATTCTGTGGATC 57.097 39.130 0.00 0.00 39.10 3.36
184 185 4.849813 TGAATGGTGATTCTGTGGATCT 57.150 40.909 0.00 0.00 39.10 2.75
185 186 4.774124 TGAATGGTGATTCTGTGGATCTC 58.226 43.478 0.00 0.00 39.10 2.75
186 187 4.225717 TGAATGGTGATTCTGTGGATCTCA 59.774 41.667 0.00 0.00 39.10 3.27
187 188 4.849813 ATGGTGATTCTGTGGATCTCAA 57.150 40.909 0.00 0.00 0.00 3.02
188 189 4.212143 TGGTGATTCTGTGGATCTCAAG 57.788 45.455 0.00 0.00 0.00 3.02
189 190 3.840078 TGGTGATTCTGTGGATCTCAAGA 59.160 43.478 0.00 0.00 0.00 3.02
190 191 4.472470 TGGTGATTCTGTGGATCTCAAGAT 59.528 41.667 0.00 0.00 37.51 2.40
191 192 5.045359 TGGTGATTCTGTGGATCTCAAGATT 60.045 40.000 0.00 0.00 34.37 2.40
192 193 5.884792 GGTGATTCTGTGGATCTCAAGATTT 59.115 40.000 0.00 0.00 34.37 2.17
193 194 7.050377 GGTGATTCTGTGGATCTCAAGATTTA 58.950 38.462 0.00 0.00 34.37 1.40
194 195 7.718753 GGTGATTCTGTGGATCTCAAGATTTAT 59.281 37.037 0.00 0.00 34.37 1.40
195 196 9.118300 GTGATTCTGTGGATCTCAAGATTTATT 57.882 33.333 0.00 0.00 34.37 1.40
196 197 9.117183 TGATTCTGTGGATCTCAAGATTTATTG 57.883 33.333 0.00 0.00 34.37 1.90
197 198 9.334947 GATTCTGTGGATCTCAAGATTTATTGA 57.665 33.333 0.00 0.00 37.60 2.57
198 199 8.498054 TTCTGTGGATCTCAAGATTTATTGAC 57.502 34.615 0.00 0.00 35.40 3.18
199 200 7.855375 TCTGTGGATCTCAAGATTTATTGACT 58.145 34.615 0.00 0.00 35.40 3.41
200 201 7.984050 TCTGTGGATCTCAAGATTTATTGACTC 59.016 37.037 0.00 0.00 35.40 3.36
201 202 6.758416 TGTGGATCTCAAGATTTATTGACTCG 59.242 38.462 0.00 0.00 35.40 4.18
202 203 6.201806 GTGGATCTCAAGATTTATTGACTCGG 59.798 42.308 0.00 0.00 35.40 4.63
203 204 6.098266 TGGATCTCAAGATTTATTGACTCGGA 59.902 38.462 0.00 0.00 35.40 4.55
204 205 6.644592 GGATCTCAAGATTTATTGACTCGGAG 59.355 42.308 2.83 2.83 35.40 4.63
205 206 6.531503 TCTCAAGATTTATTGACTCGGAGT 57.468 37.500 11.09 11.09 35.40 3.85
206 207 6.565234 TCTCAAGATTTATTGACTCGGAGTC 58.435 40.000 27.22 27.22 45.26 3.36
207 208 6.378564 TCTCAAGATTTATTGACTCGGAGTCT 59.621 38.462 31.68 19.09 45.27 3.24
208 209 6.565234 TCAAGATTTATTGACTCGGAGTCTC 58.435 40.000 31.68 21.77 45.27 3.36
209 210 6.152831 TCAAGATTTATTGACTCGGAGTCTCA 59.847 38.462 31.68 21.50 45.27 3.27
210 211 6.142818 AGATTTATTGACTCGGAGTCTCAG 57.857 41.667 31.68 0.00 45.27 3.35
211 212 5.888724 AGATTTATTGACTCGGAGTCTCAGA 59.111 40.000 31.68 17.19 45.27 3.27
212 213 4.966965 TTATTGACTCGGAGTCTCAGAC 57.033 45.455 31.68 11.61 45.27 3.51
213 214 2.570415 TTGACTCGGAGTCTCAGACT 57.430 50.000 31.68 7.17 45.27 3.24
227 228 6.586344 AGTCTCAGACTCTTGAAAATGTTCA 58.414 36.000 0.00 0.00 38.71 3.18
228 229 7.222872 AGTCTCAGACTCTTGAAAATGTTCAT 58.777 34.615 0.00 0.00 39.97 2.57
229 230 8.370940 AGTCTCAGACTCTTGAAAATGTTCATA 58.629 33.333 0.00 0.00 39.97 2.15
230 231 8.655092 GTCTCAGACTCTTGAAAATGTTCATAG 58.345 37.037 0.00 3.32 43.29 2.23
231 232 7.821359 TCTCAGACTCTTGAAAATGTTCATAGG 59.179 37.037 0.00 0.00 43.29 2.57
232 233 6.881065 TCAGACTCTTGAAAATGTTCATAGGG 59.119 38.462 0.00 3.07 43.29 3.53
233 234 6.094603 CAGACTCTTGAAAATGTTCATAGGGG 59.905 42.308 0.00 0.00 43.29 4.79
234 235 4.706962 ACTCTTGAAAATGTTCATAGGGGC 59.293 41.667 0.00 0.00 43.29 5.80
235 236 4.671831 TCTTGAAAATGTTCATAGGGGCA 58.328 39.130 0.00 0.00 43.29 5.36
236 237 5.271598 TCTTGAAAATGTTCATAGGGGCAT 58.728 37.500 0.00 0.00 43.29 4.40
237 238 5.127519 TCTTGAAAATGTTCATAGGGGCATG 59.872 40.000 0.00 0.00 43.29 4.06
238 239 4.608269 TGAAAATGTTCATAGGGGCATGA 58.392 39.130 0.00 0.00 38.88 3.07
239 240 5.210430 TGAAAATGTTCATAGGGGCATGAT 58.790 37.500 0.00 0.00 38.88 2.45
240 241 6.372104 TGAAAATGTTCATAGGGGCATGATA 58.628 36.000 0.00 0.00 38.88 2.15
241 242 6.265196 TGAAAATGTTCATAGGGGCATGATAC 59.735 38.462 0.00 0.00 38.88 2.24
242 243 3.401033 TGTTCATAGGGGCATGATACG 57.599 47.619 0.00 0.00 34.95 3.06
243 244 2.703536 TGTTCATAGGGGCATGATACGT 59.296 45.455 0.00 0.00 34.95 3.57
244 245 3.135712 TGTTCATAGGGGCATGATACGTT 59.864 43.478 0.00 0.00 34.95 3.99
245 246 3.401033 TCATAGGGGCATGATACGTTG 57.599 47.619 0.00 0.00 29.93 4.10
246 247 2.038426 TCATAGGGGCATGATACGTTGG 59.962 50.000 0.00 0.00 29.93 3.77
247 248 0.762418 TAGGGGCATGATACGTTGGG 59.238 55.000 0.00 0.00 0.00 4.12
248 249 0.986019 AGGGGCATGATACGTTGGGA 60.986 55.000 0.00 0.00 0.00 4.37
249 250 0.106918 GGGGCATGATACGTTGGGAA 60.107 55.000 0.00 0.00 0.00 3.97
250 251 1.478654 GGGGCATGATACGTTGGGAAT 60.479 52.381 0.00 0.00 0.00 3.01
251 252 2.306847 GGGCATGATACGTTGGGAATT 58.693 47.619 0.00 0.00 0.00 2.17
252 253 2.034558 GGGCATGATACGTTGGGAATTG 59.965 50.000 0.00 0.00 0.00 2.32
253 254 2.034558 GGCATGATACGTTGGGAATTGG 59.965 50.000 0.00 0.00 0.00 3.16
254 255 2.948979 GCATGATACGTTGGGAATTGGA 59.051 45.455 0.00 0.00 0.00 3.53
255 256 3.003689 GCATGATACGTTGGGAATTGGAG 59.996 47.826 0.00 0.00 0.00 3.86
256 257 2.639065 TGATACGTTGGGAATTGGAGC 58.361 47.619 0.00 0.00 0.00 4.70
257 258 2.026729 TGATACGTTGGGAATTGGAGCA 60.027 45.455 0.00 0.00 0.00 4.26
258 259 2.799126 TACGTTGGGAATTGGAGCAT 57.201 45.000 0.00 0.00 0.00 3.79
259 260 1.176527 ACGTTGGGAATTGGAGCATG 58.823 50.000 0.00 0.00 0.00 4.06
260 261 1.176527 CGTTGGGAATTGGAGCATGT 58.823 50.000 0.00 0.00 0.00 3.21
261 262 1.133025 CGTTGGGAATTGGAGCATGTC 59.867 52.381 0.00 0.00 0.00 3.06
262 263 2.170166 GTTGGGAATTGGAGCATGTCA 58.830 47.619 0.00 0.00 0.00 3.58
263 264 2.762327 GTTGGGAATTGGAGCATGTCAT 59.238 45.455 0.00 0.00 0.00 3.06
264 265 3.104519 TGGGAATTGGAGCATGTCATT 57.895 42.857 0.00 0.00 0.00 2.57
265 266 3.025978 TGGGAATTGGAGCATGTCATTC 58.974 45.455 0.00 0.00 0.00 2.67
266 267 3.025978 GGGAATTGGAGCATGTCATTCA 58.974 45.455 0.00 0.00 0.00 2.57
267 268 3.640029 GGGAATTGGAGCATGTCATTCAT 59.360 43.478 0.00 0.00 37.22 2.57
268 269 4.828939 GGGAATTGGAGCATGTCATTCATA 59.171 41.667 0.00 0.00 34.67 2.15
269 270 5.302568 GGGAATTGGAGCATGTCATTCATAA 59.697 40.000 0.00 0.00 34.67 1.90
270 271 6.183360 GGGAATTGGAGCATGTCATTCATAAA 60.183 38.462 0.00 0.00 34.67 1.40
271 272 7.267128 GGAATTGGAGCATGTCATTCATAAAA 58.733 34.615 0.00 0.00 34.67 1.52
272 273 7.437267 GGAATTGGAGCATGTCATTCATAAAAG 59.563 37.037 0.00 0.00 34.67 2.27
273 274 6.839124 TTGGAGCATGTCATTCATAAAAGT 57.161 33.333 0.00 0.00 34.67 2.66
274 275 6.839124 TGGAGCATGTCATTCATAAAAGTT 57.161 33.333 0.00 0.00 34.67 2.66
275 276 6.623486 TGGAGCATGTCATTCATAAAAGTTG 58.377 36.000 0.00 0.00 34.67 3.16
276 277 6.433716 TGGAGCATGTCATTCATAAAAGTTGA 59.566 34.615 0.00 0.00 34.67 3.18
277 278 6.971184 GGAGCATGTCATTCATAAAAGTTGAG 59.029 38.462 0.00 0.00 34.67 3.02
278 279 7.362401 GGAGCATGTCATTCATAAAAGTTGAGT 60.362 37.037 0.00 0.00 34.67 3.41
279 280 7.310664 AGCATGTCATTCATAAAAGTTGAGTG 58.689 34.615 0.00 0.00 34.67 3.51
280 281 7.040201 AGCATGTCATTCATAAAAGTTGAGTGT 60.040 33.333 0.00 0.00 33.82 3.55
281 282 8.236586 GCATGTCATTCATAAAAGTTGAGTGTA 58.763 33.333 0.00 0.00 33.82 2.90
282 283 9.546909 CATGTCATTCATAAAAGTTGAGTGTAC 57.453 33.333 0.00 0.00 33.82 2.90
283 284 8.669946 TGTCATTCATAAAAGTTGAGTGTACA 57.330 30.769 0.00 0.00 33.82 2.90
284 285 9.283768 TGTCATTCATAAAAGTTGAGTGTACAT 57.716 29.630 0.00 0.00 33.82 2.29
285 286 9.546909 GTCATTCATAAAAGTTGAGTGTACATG 57.453 33.333 0.00 0.00 33.82 3.21
286 287 9.283768 TCATTCATAAAAGTTGAGTGTACATGT 57.716 29.630 2.69 2.69 33.82 3.21
287 288 9.333497 CATTCATAAAAGTTGAGTGTACATGTG 57.667 33.333 9.11 0.00 0.00 3.21
288 289 8.445275 TTCATAAAAGTTGAGTGTACATGTGT 57.555 30.769 9.11 0.00 0.00 3.72
289 290 9.549078 TTCATAAAAGTTGAGTGTACATGTGTA 57.451 29.630 9.11 0.00 0.00 2.90
290 291 9.719355 TCATAAAAGTTGAGTGTACATGTGTAT 57.281 29.630 9.11 0.00 32.54 2.29
294 295 7.801716 AAGTTGAGTGTACATGTGTATTTGT 57.198 32.000 9.11 0.00 32.54 2.83
295 296 7.189693 AGTTGAGTGTACATGTGTATTTGTG 57.810 36.000 9.11 0.00 32.54 3.33
296 297 6.989759 AGTTGAGTGTACATGTGTATTTGTGA 59.010 34.615 9.11 0.00 32.54 3.58
297 298 7.171508 AGTTGAGTGTACATGTGTATTTGTGAG 59.828 37.037 9.11 0.00 32.54 3.51
298 299 5.408299 TGAGTGTACATGTGTATTTGTGAGC 59.592 40.000 9.11 0.00 32.54 4.26
299 300 5.304778 AGTGTACATGTGTATTTGTGAGCA 58.695 37.500 9.11 0.00 32.54 4.26
300 301 5.939883 AGTGTACATGTGTATTTGTGAGCAT 59.060 36.000 9.11 0.00 32.54 3.79
301 302 6.023435 GTGTACATGTGTATTTGTGAGCATG 58.977 40.000 9.11 0.00 39.43 4.06
302 303 5.704978 TGTACATGTGTATTTGTGAGCATGT 59.295 36.000 9.11 11.76 45.63 3.21
303 304 6.876257 TGTACATGTGTATTTGTGAGCATGTA 59.124 34.615 9.11 10.06 43.14 2.29
304 305 6.182039 ACATGTGTATTTGTGAGCATGTAC 57.818 37.500 0.00 0.00 43.14 2.90
305 306 5.939883 ACATGTGTATTTGTGAGCATGTACT 59.060 36.000 0.00 0.00 43.14 2.73
306 307 6.092670 ACATGTGTATTTGTGAGCATGTACTC 59.907 38.462 0.00 0.00 43.14 2.59
307 308 4.625311 TGTGTATTTGTGAGCATGTACTCG 59.375 41.667 0.00 0.00 39.68 4.18
308 309 4.625742 GTGTATTTGTGAGCATGTACTCGT 59.374 41.667 0.00 0.00 39.68 4.18
309 310 4.625311 TGTATTTGTGAGCATGTACTCGTG 59.375 41.667 0.00 0.00 39.68 4.35
310 311 2.812358 TTGTGAGCATGTACTCGTGT 57.188 45.000 0.00 0.00 39.68 4.49
311 312 3.926821 TTGTGAGCATGTACTCGTGTA 57.073 42.857 0.00 0.00 39.68 2.90
312 313 3.211803 TGTGAGCATGTACTCGTGTAC 57.788 47.619 18.46 18.46 46.74 2.90
313 314 2.817844 TGTGAGCATGTACTCGTGTACT 59.182 45.455 23.73 7.89 46.70 2.73
314 315 3.119955 TGTGAGCATGTACTCGTGTACTC 60.120 47.826 23.73 15.29 46.70 2.59
315 316 2.422479 TGAGCATGTACTCGTGTACTCC 59.578 50.000 23.73 13.94 46.70 3.85
316 317 1.400846 AGCATGTACTCGTGTACTCCG 59.599 52.381 23.73 14.84 46.70 4.63
317 318 1.131883 GCATGTACTCGTGTACTCCGT 59.868 52.381 23.73 8.76 46.70 4.69
318 319 2.782163 CATGTACTCGTGTACTCCGTG 58.218 52.381 23.73 14.95 46.70 4.94
319 320 1.882912 TGTACTCGTGTACTCCGTGT 58.117 50.000 23.73 14.35 46.70 4.49
320 321 2.221169 TGTACTCGTGTACTCCGTGTT 58.779 47.619 23.73 4.41 46.70 3.32
321 322 2.618241 TGTACTCGTGTACTCCGTGTTT 59.382 45.455 23.73 0.00 46.70 2.83
322 323 2.877043 ACTCGTGTACTCCGTGTTTT 57.123 45.000 7.19 0.00 0.00 2.43
323 324 3.988379 ACTCGTGTACTCCGTGTTTTA 57.012 42.857 7.19 0.00 0.00 1.52
324 325 4.305989 ACTCGTGTACTCCGTGTTTTAA 57.694 40.909 7.19 0.00 0.00 1.52
325 326 4.681744 ACTCGTGTACTCCGTGTTTTAAA 58.318 39.130 7.19 0.00 0.00 1.52
326 327 5.108517 ACTCGTGTACTCCGTGTTTTAAAA 58.891 37.500 0.00 0.00 0.00 1.52
327 328 5.005682 ACTCGTGTACTCCGTGTTTTAAAAC 59.994 40.000 21.66 21.66 39.33 2.43
328 329 4.026968 TCGTGTACTCCGTGTTTTAAAACG 60.027 41.667 22.57 14.40 41.74 3.60
341 342 7.992143 CGTGTTTTAAAACGGTTTTAATAGTGC 59.008 33.333 29.18 19.97 42.68 4.40
342 343 8.268052 GTGTTTTAAAACGGTTTTAATAGTGCC 58.732 33.333 29.18 17.38 42.68 5.01
343 344 7.437565 TGTTTTAAAACGGTTTTAATAGTGCCC 59.562 33.333 29.18 17.12 42.68 5.36
344 345 4.524316 AAAACGGTTTTAATAGTGCCCC 57.476 40.909 16.71 0.00 0.00 5.80
345 346 2.133281 ACGGTTTTAATAGTGCCCCC 57.867 50.000 0.00 0.00 0.00 5.40
346 347 1.637035 ACGGTTTTAATAGTGCCCCCT 59.363 47.619 0.00 0.00 0.00 4.79
347 348 2.042026 ACGGTTTTAATAGTGCCCCCTT 59.958 45.455 0.00 0.00 0.00 3.95
348 349 2.425668 CGGTTTTAATAGTGCCCCCTTG 59.574 50.000 0.00 0.00 0.00 3.61
349 350 3.703921 GGTTTTAATAGTGCCCCCTTGA 58.296 45.455 0.00 0.00 0.00 3.02
350 351 4.286707 GGTTTTAATAGTGCCCCCTTGAT 58.713 43.478 0.00 0.00 0.00 2.57
351 352 4.714802 GGTTTTAATAGTGCCCCCTTGATT 59.285 41.667 0.00 0.00 0.00 2.57
352 353 5.163447 GGTTTTAATAGTGCCCCCTTGATTC 60.163 44.000 0.00 0.00 0.00 2.52
353 354 4.871871 TTAATAGTGCCCCCTTGATTCA 57.128 40.909 0.00 0.00 0.00 2.57
354 355 2.736670 ATAGTGCCCCCTTGATTCAC 57.263 50.000 0.00 0.00 0.00 3.18
355 356 1.367346 TAGTGCCCCCTTGATTCACA 58.633 50.000 0.00 0.00 0.00 3.58
356 357 0.251341 AGTGCCCCCTTGATTCACAC 60.251 55.000 0.00 0.00 0.00 3.82
357 358 1.303236 TGCCCCCTTGATTCACACG 60.303 57.895 0.00 0.00 0.00 4.49
358 359 1.002624 GCCCCCTTGATTCACACGA 60.003 57.895 0.00 0.00 0.00 4.35
359 360 0.394352 GCCCCCTTGATTCACACGAT 60.394 55.000 0.00 0.00 0.00 3.73
360 361 1.955208 GCCCCCTTGATTCACACGATT 60.955 52.381 0.00 0.00 0.00 3.34
361 362 2.446435 CCCCCTTGATTCACACGATTT 58.554 47.619 0.00 0.00 0.00 2.17
362 363 2.164219 CCCCCTTGATTCACACGATTTG 59.836 50.000 0.00 0.00 0.00 2.32
363 364 2.819608 CCCCTTGATTCACACGATTTGT 59.180 45.455 0.00 0.00 39.97 2.83
364 365 4.006989 CCCCTTGATTCACACGATTTGTA 58.993 43.478 0.00 0.00 35.67 2.41
365 366 4.457603 CCCCTTGATTCACACGATTTGTAA 59.542 41.667 0.00 0.00 35.67 2.41
366 367 5.391950 CCCCTTGATTCACACGATTTGTAAG 60.392 44.000 0.00 0.00 35.67 2.34
367 368 5.411361 CCCTTGATTCACACGATTTGTAAGA 59.589 40.000 0.00 0.00 35.67 2.10
368 369 6.094048 CCCTTGATTCACACGATTTGTAAGAT 59.906 38.462 0.00 0.00 35.67 2.40
369 370 6.963242 CCTTGATTCACACGATTTGTAAGATG 59.037 38.462 0.00 0.00 35.67 2.90
370 371 5.868257 TGATTCACACGATTTGTAAGATGC 58.132 37.500 0.00 0.00 35.67 3.91
371 372 5.411053 TGATTCACACGATTTGTAAGATGCA 59.589 36.000 0.00 0.00 35.67 3.96
372 373 4.926860 TCACACGATTTGTAAGATGCAG 57.073 40.909 0.00 0.00 35.67 4.41
373 374 3.684305 TCACACGATTTGTAAGATGCAGG 59.316 43.478 0.00 0.00 35.67 4.85
374 375 3.684305 CACACGATTTGTAAGATGCAGGA 59.316 43.478 0.00 0.00 35.67 3.86
375 376 4.154015 CACACGATTTGTAAGATGCAGGAA 59.846 41.667 0.00 0.00 35.67 3.36
376 377 4.154195 ACACGATTTGTAAGATGCAGGAAC 59.846 41.667 0.00 0.00 36.32 3.62
377 378 4.154015 CACGATTTGTAAGATGCAGGAACA 59.846 41.667 0.00 0.00 0.00 3.18
378 379 4.943705 ACGATTTGTAAGATGCAGGAACAT 59.056 37.500 0.00 0.00 0.00 2.71
379 380 5.163723 ACGATTTGTAAGATGCAGGAACATG 60.164 40.000 0.00 0.00 0.00 3.21
380 381 5.065090 CGATTTGTAAGATGCAGGAACATGA 59.935 40.000 0.00 0.00 0.00 3.07
381 382 6.403527 CGATTTGTAAGATGCAGGAACATGAA 60.404 38.462 0.00 0.00 0.00 2.57
382 383 6.647334 TTTGTAAGATGCAGGAACATGAAA 57.353 33.333 0.00 0.00 0.00 2.69
383 384 6.647334 TTGTAAGATGCAGGAACATGAAAA 57.353 33.333 0.00 0.00 0.00 2.29
384 385 6.647334 TGTAAGATGCAGGAACATGAAAAA 57.353 33.333 0.00 0.00 0.00 1.94
385 386 7.230849 TGTAAGATGCAGGAACATGAAAAAT 57.769 32.000 0.00 0.00 0.00 1.82
386 387 8.347004 TGTAAGATGCAGGAACATGAAAAATA 57.653 30.769 0.00 0.00 0.00 1.40
387 388 8.801299 TGTAAGATGCAGGAACATGAAAAATAA 58.199 29.630 0.00 0.00 0.00 1.40
388 389 9.076596 GTAAGATGCAGGAACATGAAAAATAAC 57.923 33.333 0.00 0.00 0.00 1.89
389 390 7.230849 AGATGCAGGAACATGAAAAATAACA 57.769 32.000 0.00 0.00 0.00 2.41
390 391 7.844009 AGATGCAGGAACATGAAAAATAACAT 58.156 30.769 0.00 0.00 0.00 2.71
391 392 8.970020 AGATGCAGGAACATGAAAAATAACATA 58.030 29.630 0.00 0.00 0.00 2.29
392 393 9.241317 GATGCAGGAACATGAAAAATAACATAG 57.759 33.333 0.00 0.00 0.00 2.23
393 394 8.121305 TGCAGGAACATGAAAAATAACATAGT 57.879 30.769 0.00 0.00 0.00 2.12
394 395 8.028354 TGCAGGAACATGAAAAATAACATAGTG 58.972 33.333 0.00 0.00 0.00 2.74
395 396 8.243426 GCAGGAACATGAAAAATAACATAGTGA 58.757 33.333 0.00 0.00 0.00 3.41
409 410 9.981114 AATAACATAGTGATATGTCATGTTCGA 57.019 29.630 11.70 0.00 39.54 3.71
439 440 6.570672 ATGATTAGCATGCCTGTTTGATAG 57.429 37.500 15.66 0.00 35.42 2.08
440 441 5.439721 TGATTAGCATGCCTGTTTGATAGT 58.560 37.500 15.66 0.00 0.00 2.12
441 442 5.297527 TGATTAGCATGCCTGTTTGATAGTG 59.702 40.000 15.66 0.00 0.00 2.74
442 443 1.747355 AGCATGCCTGTTTGATAGTGC 59.253 47.619 15.66 0.00 0.00 4.40
443 444 1.473677 GCATGCCTGTTTGATAGTGCA 59.526 47.619 6.36 0.00 0.00 4.57
444 445 2.733227 GCATGCCTGTTTGATAGTGCAC 60.733 50.000 9.40 9.40 0.00 4.57
445 446 2.268762 TGCCTGTTTGATAGTGCACA 57.731 45.000 21.04 5.47 0.00 4.57
446 447 2.153645 TGCCTGTTTGATAGTGCACAG 58.846 47.619 21.04 4.59 37.07 3.66
447 448 2.224499 TGCCTGTTTGATAGTGCACAGA 60.224 45.455 21.04 6.79 39.25 3.41
448 449 2.813754 GCCTGTTTGATAGTGCACAGAA 59.186 45.455 21.04 4.13 39.25 3.02
449 450 3.253188 GCCTGTTTGATAGTGCACAGAAA 59.747 43.478 21.04 8.87 39.25 2.52
450 451 4.082571 GCCTGTTTGATAGTGCACAGAAAT 60.083 41.667 21.04 6.66 39.25 2.17
451 452 5.123820 GCCTGTTTGATAGTGCACAGAAATA 59.876 40.000 21.04 8.96 39.25 1.40
452 453 6.349280 GCCTGTTTGATAGTGCACAGAAATAA 60.349 38.462 21.04 3.47 39.25 1.40
453 454 7.023575 CCTGTTTGATAGTGCACAGAAATAAC 58.976 38.462 21.04 15.02 39.25 1.89
454 455 7.308529 CCTGTTTGATAGTGCACAGAAATAACA 60.309 37.037 21.04 18.31 39.25 2.41
455 456 8.109705 TGTTTGATAGTGCACAGAAATAACAT 57.890 30.769 21.04 0.00 0.00 2.71
456 457 9.225436 TGTTTGATAGTGCACAGAAATAACATA 57.775 29.630 21.04 0.00 0.00 2.29
457 458 9.708222 GTTTGATAGTGCACAGAAATAACATAG 57.292 33.333 21.04 0.00 0.00 2.23
458 459 9.448438 TTTGATAGTGCACAGAAATAACATAGT 57.552 29.630 21.04 0.00 0.00 2.12
459 460 8.424274 TGATAGTGCACAGAAATAACATAGTG 57.576 34.615 21.04 0.00 0.00 2.74
460 461 8.257306 TGATAGTGCACAGAAATAACATAGTGA 58.743 33.333 21.04 0.00 0.00 3.41
461 462 9.265901 GATAGTGCACAGAAATAACATAGTGAT 57.734 33.333 21.04 0.00 0.00 3.06
464 465 9.049523 AGTGCACAGAAATAACATAGTGATATG 57.950 33.333 21.04 0.00 0.00 1.78
465 466 8.830580 GTGCACAGAAATAACATAGTGATATGT 58.169 33.333 13.17 0.00 42.00 2.29
466 467 9.045223 TGCACAGAAATAACATAGTGATATGTC 57.955 33.333 1.63 0.00 39.54 3.06
467 468 9.045223 GCACAGAAATAACATAGTGATATGTCA 57.955 33.333 1.63 0.00 39.54 3.58
474 475 9.981114 AATAACATAGTGATATGTCATGTTCGA 57.019 29.630 11.70 0.00 39.54 3.71
476 477 7.880059 ACATAGTGATATGTCATGTTCGATG 57.120 36.000 0.00 0.00 35.97 3.84
477 478 7.436933 ACATAGTGATATGTCATGTTCGATGT 58.563 34.615 0.00 0.00 35.97 3.06
478 479 7.928167 ACATAGTGATATGTCATGTTCGATGTT 59.072 33.333 0.00 0.00 35.97 2.71
479 480 9.410556 CATAGTGATATGTCATGTTCGATGTTA 57.589 33.333 0.00 0.00 36.60 2.41
480 481 7.700322 AGTGATATGTCATGTTCGATGTTAC 57.300 36.000 0.00 0.00 36.60 2.50
481 482 7.264947 AGTGATATGTCATGTTCGATGTTACA 58.735 34.615 0.00 0.00 36.60 2.41
482 483 7.436376 AGTGATATGTCATGTTCGATGTTACAG 59.564 37.037 0.00 0.00 36.60 2.74
483 484 6.701400 TGATATGTCATGTTCGATGTTACAGG 59.299 38.462 0.00 0.00 0.00 4.00
484 485 4.529109 TGTCATGTTCGATGTTACAGGA 57.471 40.909 0.00 0.00 33.23 3.86
485 486 4.494484 TGTCATGTTCGATGTTACAGGAG 58.506 43.478 2.78 0.00 35.96 3.69
486 487 4.021456 TGTCATGTTCGATGTTACAGGAGT 60.021 41.667 2.78 0.00 35.96 3.85
487 488 5.184287 TGTCATGTTCGATGTTACAGGAGTA 59.816 40.000 2.78 0.00 35.96 2.59
488 489 5.515626 GTCATGTTCGATGTTACAGGAGTAC 59.484 44.000 2.78 0.00 35.96 2.73
489 490 5.417894 TCATGTTCGATGTTACAGGAGTACT 59.582 40.000 0.00 0.00 30.98 2.73
490 491 5.717078 TGTTCGATGTTACAGGAGTACTT 57.283 39.130 0.00 0.00 0.00 2.24
491 492 6.822667 TGTTCGATGTTACAGGAGTACTTA 57.177 37.500 0.00 0.00 0.00 2.24
492 493 6.849502 TGTTCGATGTTACAGGAGTACTTAG 58.150 40.000 0.00 0.00 0.00 2.18
493 494 6.432162 TGTTCGATGTTACAGGAGTACTTAGT 59.568 38.462 0.00 0.00 0.00 2.24
494 495 7.607607 TGTTCGATGTTACAGGAGTACTTAGTA 59.392 37.037 0.00 0.00 0.00 1.82
495 496 7.783090 TCGATGTTACAGGAGTACTTAGTAG 57.217 40.000 0.00 0.00 0.00 2.57
496 497 7.559486 TCGATGTTACAGGAGTACTTAGTAGA 58.441 38.462 0.00 0.00 0.00 2.59
497 498 8.209584 TCGATGTTACAGGAGTACTTAGTAGAT 58.790 37.037 0.00 0.00 0.00 1.98
498 499 8.497554 CGATGTTACAGGAGTACTTAGTAGATC 58.502 40.741 0.00 5.84 0.00 2.75
499 500 9.339850 GATGTTACAGGAGTACTTAGTAGATCA 57.660 37.037 0.00 3.12 0.00 2.92
500 501 9.696572 ATGTTACAGGAGTACTTAGTAGATCAA 57.303 33.333 0.00 0.00 0.00 2.57
501 502 9.524496 TGTTACAGGAGTACTTAGTAGATCAAA 57.476 33.333 0.00 0.00 0.00 2.69
505 506 9.310449 ACAGGAGTACTTAGTAGATCAAAAAGA 57.690 33.333 0.00 0.00 0.00 2.52
528 529 9.944376 AAGATTTCTATGAAAACTAGCAGTACA 57.056 29.630 0.00 0.00 0.00 2.90
529 530 9.944376 AGATTTCTATGAAAACTAGCAGTACAA 57.056 29.630 0.00 0.00 0.00 2.41
532 533 8.896320 TTCTATGAAAACTAGCAGTACAAACA 57.104 30.769 0.00 0.00 0.00 2.83
533 534 8.896320 TCTATGAAAACTAGCAGTACAAACAA 57.104 30.769 0.00 0.00 0.00 2.83
534 535 9.332502 TCTATGAAAACTAGCAGTACAAACAAA 57.667 29.630 0.00 0.00 0.00 2.83
537 538 7.422399 TGAAAACTAGCAGTACAAACAAATCC 58.578 34.615 0.00 0.00 0.00 3.01
538 539 5.959618 AACTAGCAGTACAAACAAATCCC 57.040 39.130 0.00 0.00 0.00 3.85
539 540 4.980573 ACTAGCAGTACAAACAAATCCCA 58.019 39.130 0.00 0.00 0.00 4.37
540 541 5.381757 ACTAGCAGTACAAACAAATCCCAA 58.618 37.500 0.00 0.00 0.00 4.12
541 542 4.853924 AGCAGTACAAACAAATCCCAAG 57.146 40.909 0.00 0.00 0.00 3.61
542 543 4.469657 AGCAGTACAAACAAATCCCAAGA 58.530 39.130 0.00 0.00 0.00 3.02
543 544 5.079643 AGCAGTACAAACAAATCCCAAGAT 58.920 37.500 0.00 0.00 0.00 2.40
544 545 5.539955 AGCAGTACAAACAAATCCCAAGATT 59.460 36.000 0.00 0.00 44.86 2.40
545 546 6.719370 AGCAGTACAAACAAATCCCAAGATTA 59.281 34.615 0.00 0.00 42.03 1.75
546 547 7.397192 AGCAGTACAAACAAATCCCAAGATTAT 59.603 33.333 0.00 0.00 42.03 1.28
547 548 8.682710 GCAGTACAAACAAATCCCAAGATTATA 58.317 33.333 0.00 0.00 42.03 0.98
577 578 5.922546 CGATTCAAACAATCGTTACAAGGA 58.077 37.500 8.28 0.00 43.10 3.36
578 579 6.367421 CGATTCAAACAATCGTTACAAGGAA 58.633 36.000 8.28 0.00 43.10 3.36
579 580 6.853872 CGATTCAAACAATCGTTACAAGGAAA 59.146 34.615 8.28 0.00 43.10 3.13
580 581 7.377397 CGATTCAAACAATCGTTACAAGGAAAA 59.623 33.333 8.28 0.00 43.10 2.29
581 582 8.934507 ATTCAAACAATCGTTACAAGGAAAAA 57.065 26.923 0.00 0.00 33.99 1.94
643 644 2.978156 TGAATCAAAGAGGCCCTTGT 57.022 45.000 0.00 0.00 34.79 3.16
644 645 3.243359 TGAATCAAAGAGGCCCTTGTT 57.757 42.857 0.00 0.00 34.79 2.83
645 646 3.157087 TGAATCAAAGAGGCCCTTGTTC 58.843 45.455 0.00 9.02 34.79 3.18
646 647 3.181429 TGAATCAAAGAGGCCCTTGTTCT 60.181 43.478 0.00 0.00 34.79 3.01
647 648 3.532641 ATCAAAGAGGCCCTTGTTCTT 57.467 42.857 0.00 0.00 34.79 2.52
648 649 3.312736 TCAAAGAGGCCCTTGTTCTTT 57.687 42.857 10.35 10.35 40.70 2.52
653 654 0.261696 AGGCCCTTGTTCTTTGGTGT 59.738 50.000 0.00 0.00 0.00 4.16
658 659 1.956477 CCTTGTTCTTTGGTGTGAGGG 59.044 52.381 0.00 0.00 0.00 4.30
664 665 0.184933 CTTTGGTGTGAGGGGTGGAA 59.815 55.000 0.00 0.00 0.00 3.53
673 674 5.258051 GTGTGAGGGGTGGAAAATAATACA 58.742 41.667 0.00 0.00 0.00 2.29
682 683 7.763985 GGGGTGGAAAATAATACAAGAAATGTG 59.236 37.037 0.00 0.00 43.77 3.21
774 1158 4.393155 ACGATCGGGCAGCAGCAA 62.393 61.111 20.98 0.00 44.61 3.91
775 1159 3.869272 CGATCGGGCAGCAGCAAC 61.869 66.667 7.38 0.00 44.61 4.17
776 1160 2.437359 GATCGGGCAGCAGCAACT 60.437 61.111 2.65 0.00 44.61 3.16
777 1161 2.749044 ATCGGGCAGCAGCAACTG 60.749 61.111 2.65 1.82 44.61 3.16
796 1181 2.358193 GAACCAACCAACCAACCGCC 62.358 60.000 0.00 0.00 0.00 6.13
843 1228 4.286291 TCTTCTTCCCCTTCTTTACTCACC 59.714 45.833 0.00 0.00 0.00 4.02
847 1232 0.392595 CCCTTCTTTACTCACCCCGC 60.393 60.000 0.00 0.00 0.00 6.13
951 1343 2.032528 CCAACTCTTGCGCTCCCA 59.967 61.111 9.73 0.00 0.00 4.37
953 1346 2.032681 AACTCTTGCGCTCCCACC 59.967 61.111 9.73 0.00 0.00 4.61
954 1347 2.520536 AACTCTTGCGCTCCCACCT 61.521 57.895 9.73 0.00 0.00 4.00
964 1357 3.618780 CTCCCACCTCCACAGCAGC 62.619 68.421 0.00 0.00 0.00 5.25
965 1358 3.644606 CCCACCTCCACAGCAGCT 61.645 66.667 0.00 0.00 0.00 4.24
996 1391 2.669569 GCAAAGAGCCAGCGTCCA 60.670 61.111 0.00 0.00 37.23 4.02
1172 1573 2.766229 GGTGGAGGAGAGGGAGGC 60.766 72.222 0.00 0.00 0.00 4.70
1617 2027 2.580470 CGAGTGCCGCGACATGATC 61.580 63.158 8.23 0.97 0.00 2.92
1630 2040 3.182472 ATGATCCGCCTCGTCGACG 62.182 63.158 31.30 31.30 41.45 5.12
1718 2128 0.911525 CACCTCCACCTCCACTCCAT 60.912 60.000 0.00 0.00 0.00 3.41
1975 2390 2.537600 CCCCCTTCCCAGAGATCAG 58.462 63.158 0.00 0.00 0.00 2.90
2007 2422 1.066587 GGATTCTGCGAGTCCGAGG 59.933 63.158 4.81 0.00 38.22 4.63
2081 2496 2.671396 CGAAGAACCCACTAATCAACCG 59.329 50.000 0.00 0.00 0.00 4.44
2182 2602 4.090761 TGCTGATCAACTTGGTTTCTCT 57.909 40.909 0.00 0.00 0.00 3.10
2194 2614 3.779444 TGGTTTCTCTTCTCCTCTGCTA 58.221 45.455 0.00 0.00 0.00 3.49
2205 2625 4.600062 TCTCCTCTGCTATGTTACTGACA 58.400 43.478 0.00 0.00 43.71 3.58
2266 2687 2.552315 GTCGGCTGGTGAAAATGAAGAA 59.448 45.455 0.00 0.00 0.00 2.52
2274 2695 4.821805 TGGTGAAAATGAAGAACTCACTCC 59.178 41.667 0.00 0.00 36.69 3.85
2287 2712 6.112058 AGAACTCACTCCATGCTTAAGAATC 58.888 40.000 6.67 0.00 0.00 2.52
2310 2735 2.292569 CTCTGTTGCTGTGCTTGTGAAT 59.707 45.455 0.00 0.00 0.00 2.57
2313 2738 2.166050 TGTTGCTGTGCTTGTGAATTGT 59.834 40.909 0.00 0.00 0.00 2.71
2317 2742 3.119209 TGCTGTGCTTGTGAATTGTTCAA 60.119 39.130 0.00 0.00 42.15 2.69
2320 2745 3.803231 TGTGCTTGTGAATTGTTCAATGC 59.197 39.130 0.00 0.00 42.15 3.56
2323 2748 4.508492 TGCTTGTGAATTGTTCAATGCTTG 59.492 37.500 5.30 0.00 42.15 4.01
2324 2749 4.084223 GCTTGTGAATTGTTCAATGCTTGG 60.084 41.667 5.30 0.00 42.15 3.61
2327 2752 6.154203 TGTGAATTGTTCAATGCTTGGTTA 57.846 33.333 5.30 0.00 42.15 2.85
2328 2753 6.215121 TGTGAATTGTTCAATGCTTGGTTAG 58.785 36.000 5.30 0.00 42.15 2.34
2404 2884 3.507622 ACTTGTCCATTAAGAAAGCCAGC 59.492 43.478 0.00 0.00 0.00 4.85
2416 2900 2.656947 AAGCCAGCAAGAAAGTACCA 57.343 45.000 0.00 0.00 0.00 3.25
2417 2901 2.656947 AGCCAGCAAGAAAGTACCAA 57.343 45.000 0.00 0.00 0.00 3.67
2419 2903 2.158608 AGCCAGCAAGAAAGTACCAACT 60.159 45.455 0.00 0.00 37.65 3.16
2420 2904 2.030805 GCCAGCAAGAAAGTACCAACTG 60.031 50.000 0.00 0.00 35.62 3.16
2421 2905 2.030805 CCAGCAAGAAAGTACCAACTGC 60.031 50.000 0.00 0.00 35.62 4.40
2422 2906 2.030805 CAGCAAGAAAGTACCAACTGCC 60.031 50.000 0.00 0.00 35.62 4.85
2423 2907 2.158608 AGCAAGAAAGTACCAACTGCCT 60.159 45.455 0.00 0.00 35.62 4.75
2425 2909 3.068165 GCAAGAAAGTACCAACTGCCTTT 59.932 43.478 0.00 0.00 35.62 3.11
2426 2910 4.610945 CAAGAAAGTACCAACTGCCTTTG 58.389 43.478 0.00 0.00 35.62 2.77
2427 2911 3.898482 AGAAAGTACCAACTGCCTTTGT 58.102 40.909 0.00 0.00 35.62 2.83
2428 2912 3.632145 AGAAAGTACCAACTGCCTTTGTG 59.368 43.478 0.00 0.00 35.62 3.33
2429 2913 2.729028 AGTACCAACTGCCTTTGTGT 57.271 45.000 0.00 0.00 33.57 3.72
2430 2914 3.849563 AGTACCAACTGCCTTTGTGTA 57.150 42.857 0.00 0.00 33.57 2.90
2431 2915 3.473625 AGTACCAACTGCCTTTGTGTAC 58.526 45.455 12.95 12.95 35.51 2.90
2432 2916 2.428544 ACCAACTGCCTTTGTGTACA 57.571 45.000 0.00 0.00 0.00 2.90
2433 2917 2.729194 ACCAACTGCCTTTGTGTACAA 58.271 42.857 0.00 0.00 0.00 2.41
2434 2918 2.687935 ACCAACTGCCTTTGTGTACAAG 59.312 45.455 0.00 0.00 37.15 3.16
2435 2919 2.687935 CCAACTGCCTTTGTGTACAAGT 59.312 45.455 0.00 0.00 37.15 3.16
2436 2920 3.880490 CCAACTGCCTTTGTGTACAAGTA 59.120 43.478 0.00 0.00 37.15 2.24
2437 2921 4.261031 CCAACTGCCTTTGTGTACAAGTAC 60.261 45.833 0.00 3.47 37.15 2.73
2438 2922 4.145365 ACTGCCTTTGTGTACAAGTACA 57.855 40.909 8.88 8.88 43.14 2.90
2439 2923 4.519213 ACTGCCTTTGTGTACAAGTACAA 58.481 39.130 14.08 0.00 46.33 2.41
2479 2963 2.742053 GCCATCTTACGCTGTCAAAAGA 59.258 45.455 0.00 0.00 32.85 2.52
2504 2988 9.436957 GAAAAATTTACATCTGGAGACTGAGTA 57.563 33.333 0.00 0.00 41.91 2.59
2508 2993 6.701145 TTACATCTGGAGACTGAGTATGTC 57.299 41.667 0.14 0.00 41.91 3.06
2512 2997 6.489700 ACATCTGGAGACTGAGTATGTCTATG 59.510 42.308 0.00 0.00 43.88 2.23
2525 3010 6.570692 AGTATGTCTATGGACTTTTGTACCG 58.429 40.000 10.82 0.00 42.54 4.02
2534 3019 4.141981 TGGACTTTTGTACCGTGTGTTCTA 60.142 41.667 0.00 0.00 30.36 2.10
2537 3022 6.147864 ACTTTTGTACCGTGTGTTCTAGTA 57.852 37.500 0.00 0.00 0.00 1.82
2538 3023 6.211515 ACTTTTGTACCGTGTGTTCTAGTAG 58.788 40.000 0.00 0.00 0.00 2.57
2539 3024 5.772825 TTTGTACCGTGTGTTCTAGTAGT 57.227 39.130 0.00 0.00 0.00 2.73
2540 3025 5.772825 TTGTACCGTGTGTTCTAGTAGTT 57.227 39.130 0.00 0.00 0.00 2.24
2547 3033 6.257193 ACCGTGTGTTCTAGTAGTTTTTGAAG 59.743 38.462 0.00 0.00 0.00 3.02
2584 3070 0.868406 CGCAGTTGAGTGGGTCTTTC 59.132 55.000 0.00 0.00 0.00 2.62
2638 3124 3.069443 GGGAAAGAACAAATTCACCAGCA 59.931 43.478 0.00 0.00 37.29 4.41
2640 3126 3.733443 AAGAACAAATTCACCAGCACC 57.267 42.857 0.00 0.00 37.29 5.01
2648 3134 0.465460 TTCACCAGCACCAACCTGAC 60.465 55.000 0.00 0.00 32.03 3.51
2656 3142 2.034558 AGCACCAACCTGACAAAAATCG 59.965 45.455 0.00 0.00 0.00 3.34
2689 3175 6.319658 ACAAAATATTGAGATGTAGGCCTGTG 59.680 38.462 17.99 0.00 38.94 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.151308 TGGTCATAAACATCAAAAACACATCC 58.849 34.615 0.00 0.00 0.00 3.51
2 3 8.586570 TTGGTCATAAACATCAAAAACACATC 57.413 30.769 0.00 0.00 0.00 3.06
5 6 8.190888 TGTTTGGTCATAAACATCAAAAACAC 57.809 30.769 0.00 0.00 43.46 3.32
15 16 4.580995 ACGATTGGTGTTTGGTCATAAACA 59.419 37.500 0.00 0.00 45.41 2.83
16 17 5.116069 ACGATTGGTGTTTGGTCATAAAC 57.884 39.130 0.00 0.00 40.18 2.01
17 18 8.740123 ATATACGATTGGTGTTTGGTCATAAA 57.260 30.769 0.00 0.00 0.00 1.40
18 19 9.263538 GTATATACGATTGGTGTTTGGTCATAA 57.736 33.333 0.00 0.00 0.00 1.90
19 20 8.644216 AGTATATACGATTGGTGTTTGGTCATA 58.356 33.333 7.23 0.00 0.00 2.15
20 21 7.506114 AGTATATACGATTGGTGTTTGGTCAT 58.494 34.615 7.23 0.00 0.00 3.06
21 22 6.880484 AGTATATACGATTGGTGTTTGGTCA 58.120 36.000 7.23 0.00 0.00 4.02
22 23 6.423001 GGAGTATATACGATTGGTGTTTGGTC 59.577 42.308 7.23 0.00 0.00 4.02
23 24 6.126997 TGGAGTATATACGATTGGTGTTTGGT 60.127 38.462 7.23 0.00 0.00 3.67
24 25 6.285224 TGGAGTATATACGATTGGTGTTTGG 58.715 40.000 7.23 0.00 0.00 3.28
25 26 7.962964 ATGGAGTATATACGATTGGTGTTTG 57.037 36.000 7.23 0.00 0.00 2.93
26 27 9.871238 GATATGGAGTATATACGATTGGTGTTT 57.129 33.333 7.23 0.00 32.09 2.83
27 28 9.256228 AGATATGGAGTATATACGATTGGTGTT 57.744 33.333 7.23 0.00 32.09 3.32
28 29 8.824756 AGATATGGAGTATATACGATTGGTGT 57.175 34.615 7.23 0.00 32.09 4.16
42 43 9.494271 GCTCAATTCATACAAAGATATGGAGTA 57.506 33.333 0.00 0.00 33.96 2.59
43 44 8.216423 AGCTCAATTCATACAAAGATATGGAGT 58.784 33.333 0.00 0.00 33.96 3.85
44 45 8.618702 AGCTCAATTCATACAAAGATATGGAG 57.381 34.615 0.00 0.00 33.96 3.86
45 46 9.716531 CTAGCTCAATTCATACAAAGATATGGA 57.283 33.333 0.00 0.00 33.96 3.41
46 47 8.944029 CCTAGCTCAATTCATACAAAGATATGG 58.056 37.037 0.00 0.00 33.96 2.74
47 48 9.499479 ACCTAGCTCAATTCATACAAAGATATG 57.501 33.333 0.00 0.00 34.39 1.78
49 50 9.547753 GAACCTAGCTCAATTCATACAAAGATA 57.452 33.333 0.00 0.00 0.00 1.98
50 51 8.049117 TGAACCTAGCTCAATTCATACAAAGAT 58.951 33.333 0.00 0.00 0.00 2.40
51 52 7.394016 TGAACCTAGCTCAATTCATACAAAGA 58.606 34.615 0.00 0.00 0.00 2.52
52 53 7.615582 TGAACCTAGCTCAATTCATACAAAG 57.384 36.000 0.00 0.00 0.00 2.77
53 54 8.579850 AATGAACCTAGCTCAATTCATACAAA 57.420 30.769 15.70 0.00 40.13 2.83
54 55 8.579850 AAATGAACCTAGCTCAATTCATACAA 57.420 30.769 15.70 0.00 40.13 2.41
55 56 8.579850 AAAATGAACCTAGCTCAATTCATACA 57.420 30.769 15.70 0.00 40.13 2.29
79 80 4.344102 TCAACTTCCCGAGAGAGAGAAAAA 59.656 41.667 0.00 0.00 0.00 1.94
80 81 3.895656 TCAACTTCCCGAGAGAGAGAAAA 59.104 43.478 0.00 0.00 0.00 2.29
81 82 3.497332 TCAACTTCCCGAGAGAGAGAAA 58.503 45.455 0.00 0.00 0.00 2.52
82 83 3.156288 TCAACTTCCCGAGAGAGAGAA 57.844 47.619 0.00 0.00 0.00 2.87
83 84 2.881111 TCAACTTCCCGAGAGAGAGA 57.119 50.000 0.00 0.00 0.00 3.10
84 85 3.580731 GTTTCAACTTCCCGAGAGAGAG 58.419 50.000 0.00 0.00 0.00 3.20
85 86 2.299297 GGTTTCAACTTCCCGAGAGAGA 59.701 50.000 0.00 0.00 0.00 3.10
86 87 2.300437 AGGTTTCAACTTCCCGAGAGAG 59.700 50.000 0.00 0.00 0.00 3.20
87 88 2.299297 GAGGTTTCAACTTCCCGAGAGA 59.701 50.000 0.00 0.00 0.00 3.10
88 89 2.689646 GAGGTTTCAACTTCCCGAGAG 58.310 52.381 0.00 0.00 0.00 3.20
89 90 1.000506 CGAGGTTTCAACTTCCCGAGA 59.999 52.381 0.00 0.00 31.96 4.04
90 91 1.429463 CGAGGTTTCAACTTCCCGAG 58.571 55.000 0.00 0.00 31.96 4.63
91 92 0.034337 CCGAGGTTTCAACTTCCCGA 59.966 55.000 0.00 0.00 31.96 5.14
92 93 0.250166 ACCGAGGTTTCAACTTCCCG 60.250 55.000 0.00 0.00 31.96 5.14
93 94 2.038164 AGTACCGAGGTTTCAACTTCCC 59.962 50.000 0.00 0.00 31.96 3.97
94 95 3.064931 CAGTACCGAGGTTTCAACTTCC 58.935 50.000 0.00 0.00 31.96 3.46
95 96 3.064931 CCAGTACCGAGGTTTCAACTTC 58.935 50.000 0.00 0.00 0.00 3.01
96 97 2.701951 TCCAGTACCGAGGTTTCAACTT 59.298 45.455 0.00 0.00 0.00 2.66
97 98 2.299297 CTCCAGTACCGAGGTTTCAACT 59.701 50.000 0.00 0.00 0.00 3.16
98 99 2.036862 ACTCCAGTACCGAGGTTTCAAC 59.963 50.000 0.00 0.00 0.00 3.18
99 100 2.322658 ACTCCAGTACCGAGGTTTCAA 58.677 47.619 0.00 0.00 0.00 2.69
100 101 2.005370 ACTCCAGTACCGAGGTTTCA 57.995 50.000 0.00 0.00 0.00 2.69
101 102 2.298163 TGAACTCCAGTACCGAGGTTTC 59.702 50.000 0.00 7.76 0.00 2.78
102 103 2.322658 TGAACTCCAGTACCGAGGTTT 58.677 47.619 0.00 0.00 0.00 3.27
103 104 2.005370 TGAACTCCAGTACCGAGGTT 57.995 50.000 0.00 2.87 0.00 3.50
104 105 1.893801 CTTGAACTCCAGTACCGAGGT 59.106 52.381 11.23 5.34 0.00 3.85
105 106 1.893801 ACTTGAACTCCAGTACCGAGG 59.106 52.381 11.23 2.02 0.00 4.63
106 107 3.662247 AACTTGAACTCCAGTACCGAG 57.338 47.619 6.11 6.11 0.00 4.63
107 108 7.776969 AGTATATAACTTGAACTCCAGTACCGA 59.223 37.037 0.00 0.00 33.35 4.69
108 109 7.938715 AGTATATAACTTGAACTCCAGTACCG 58.061 38.462 0.00 0.00 33.35 4.02
137 138 2.106566 ACTGGAGTAGGAGCACTCATG 58.893 52.381 5.69 0.00 45.64 3.07
138 139 2.106566 CACTGGAGTAGGAGCACTCAT 58.893 52.381 5.69 0.00 45.64 2.90
139 140 1.550327 CACTGGAGTAGGAGCACTCA 58.450 55.000 5.69 0.00 45.64 3.41
140 141 0.820871 CCACTGGAGTAGGAGCACTC 59.179 60.000 0.00 0.00 43.55 3.51
141 142 0.409876 TCCACTGGAGTAGGAGCACT 59.590 55.000 0.00 0.00 0.00 4.40
142 143 1.490574 ATCCACTGGAGTAGGAGCAC 58.509 55.000 3.62 0.00 34.05 4.40
143 144 2.237143 CAAATCCACTGGAGTAGGAGCA 59.763 50.000 3.62 0.00 34.05 4.26
144 145 2.501723 TCAAATCCACTGGAGTAGGAGC 59.498 50.000 3.62 0.00 34.05 4.70
145 146 4.826274 TTCAAATCCACTGGAGTAGGAG 57.174 45.455 3.62 0.00 34.05 3.69
146 147 4.080356 CCATTCAAATCCACTGGAGTAGGA 60.080 45.833 3.62 0.14 34.05 2.94
147 148 4.202441 CCATTCAAATCCACTGGAGTAGG 58.798 47.826 3.62 0.00 34.05 3.18
148 149 4.637534 CACCATTCAAATCCACTGGAGTAG 59.362 45.833 3.62 0.00 34.05 2.57
149 150 4.288366 TCACCATTCAAATCCACTGGAGTA 59.712 41.667 3.62 0.00 34.05 2.59
150 151 3.074390 TCACCATTCAAATCCACTGGAGT 59.926 43.478 3.62 0.00 34.05 3.85
151 152 3.689347 TCACCATTCAAATCCACTGGAG 58.311 45.455 3.62 0.00 34.05 3.86
152 153 3.805066 TCACCATTCAAATCCACTGGA 57.195 42.857 0.00 0.00 35.55 3.86
153 154 4.708421 AGAATCACCATTCAAATCCACTGG 59.292 41.667 0.00 0.00 41.03 4.00
154 155 5.184479 ACAGAATCACCATTCAAATCCACTG 59.816 40.000 0.00 0.00 41.03 3.66
155 156 5.184479 CACAGAATCACCATTCAAATCCACT 59.816 40.000 0.00 0.00 41.03 4.00
156 157 5.404946 CACAGAATCACCATTCAAATCCAC 58.595 41.667 0.00 0.00 41.03 4.02
157 158 4.463539 CCACAGAATCACCATTCAAATCCA 59.536 41.667 0.00 0.00 41.03 3.41
158 159 4.706476 TCCACAGAATCACCATTCAAATCC 59.294 41.667 0.00 0.00 41.03 3.01
159 160 5.902613 TCCACAGAATCACCATTCAAATC 57.097 39.130 0.00 0.00 41.03 2.17
160 161 6.192773 AGATCCACAGAATCACCATTCAAAT 58.807 36.000 0.00 0.00 41.03 2.32
161 162 5.573219 AGATCCACAGAATCACCATTCAAA 58.427 37.500 0.00 0.00 41.03 2.69
162 163 5.183530 AGATCCACAGAATCACCATTCAA 57.816 39.130 0.00 0.00 41.03 2.69
163 164 4.225717 TGAGATCCACAGAATCACCATTCA 59.774 41.667 0.00 0.00 41.03 2.57
164 165 4.774124 TGAGATCCACAGAATCACCATTC 58.226 43.478 0.00 0.00 39.10 2.67
165 166 4.849813 TGAGATCCACAGAATCACCATT 57.150 40.909 0.00 0.00 0.00 3.16
166 167 4.472470 TCTTGAGATCCACAGAATCACCAT 59.528 41.667 0.00 0.00 0.00 3.55
167 168 3.840078 TCTTGAGATCCACAGAATCACCA 59.160 43.478 0.00 0.00 0.00 4.17
168 169 4.478206 TCTTGAGATCCACAGAATCACC 57.522 45.455 0.00 0.00 0.00 4.02
169 170 6.998968 AAATCTTGAGATCCACAGAATCAC 57.001 37.500 0.00 0.00 32.75 3.06
170 171 9.117183 CAATAAATCTTGAGATCCACAGAATCA 57.883 33.333 0.00 0.00 32.75 2.57
171 172 9.334947 TCAATAAATCTTGAGATCCACAGAATC 57.665 33.333 0.00 0.00 32.75 2.52
172 173 9.118300 GTCAATAAATCTTGAGATCCACAGAAT 57.882 33.333 0.00 0.00 35.88 2.40
173 174 8.324306 AGTCAATAAATCTTGAGATCCACAGAA 58.676 33.333 0.00 0.00 35.88 3.02
174 175 7.855375 AGTCAATAAATCTTGAGATCCACAGA 58.145 34.615 0.00 0.00 35.88 3.41
175 176 7.042858 CGAGTCAATAAATCTTGAGATCCACAG 60.043 40.741 0.00 0.00 35.88 3.66
176 177 6.758416 CGAGTCAATAAATCTTGAGATCCACA 59.242 38.462 0.00 0.00 35.88 4.17
177 178 6.201806 CCGAGTCAATAAATCTTGAGATCCAC 59.798 42.308 0.00 0.00 35.88 4.02
178 179 6.098266 TCCGAGTCAATAAATCTTGAGATCCA 59.902 38.462 0.00 0.00 35.88 3.41
179 180 6.516718 TCCGAGTCAATAAATCTTGAGATCC 58.483 40.000 0.00 0.00 35.88 3.36
180 181 7.206687 ACTCCGAGTCAATAAATCTTGAGATC 58.793 38.462 0.00 0.00 35.88 2.75
181 182 7.118496 ACTCCGAGTCAATAAATCTTGAGAT 57.882 36.000 0.00 0.00 35.88 2.75
182 183 6.531503 ACTCCGAGTCAATAAATCTTGAGA 57.468 37.500 0.00 0.00 35.88 3.27
183 184 6.820470 GACTCCGAGTCAATAAATCTTGAG 57.180 41.667 21.47 0.00 44.45 3.02
201 202 8.166606 TGAACATTTTCAAGAGTCTGAGACTCC 61.167 40.741 32.57 18.31 46.05 3.85
202 203 6.703607 TGAACATTTTCAAGAGTCTGAGACTC 59.296 38.462 30.16 30.16 45.70 3.36
203 204 6.586344 TGAACATTTTCAAGAGTCTGAGACT 58.414 36.000 16.14 16.14 41.16 3.24
204 205 6.851222 TGAACATTTTCAAGAGTCTGAGAC 57.149 37.500 3.98 3.98 38.87 3.36
205 206 7.821359 CCTATGAACATTTTCAAGAGTCTGAGA 59.179 37.037 0.00 0.00 45.01 3.27
206 207 7.065563 CCCTATGAACATTTTCAAGAGTCTGAG 59.934 40.741 0.00 0.00 45.01 3.35
207 208 6.881065 CCCTATGAACATTTTCAAGAGTCTGA 59.119 38.462 0.00 0.00 45.01 3.27
208 209 6.094603 CCCCTATGAACATTTTCAAGAGTCTG 59.905 42.308 0.00 0.00 45.01 3.51
209 210 6.183347 CCCCTATGAACATTTTCAAGAGTCT 58.817 40.000 0.00 0.00 45.01 3.24
210 211 5.163612 GCCCCTATGAACATTTTCAAGAGTC 60.164 44.000 0.00 0.00 45.01 3.36
211 212 4.706962 GCCCCTATGAACATTTTCAAGAGT 59.293 41.667 0.00 0.00 45.01 3.24
212 213 4.706476 TGCCCCTATGAACATTTTCAAGAG 59.294 41.667 0.00 0.00 45.01 2.85
213 214 4.671831 TGCCCCTATGAACATTTTCAAGA 58.328 39.130 0.00 0.00 45.01 3.02
214 215 5.127519 TCATGCCCCTATGAACATTTTCAAG 59.872 40.000 0.00 0.00 45.01 3.02
215 216 5.022122 TCATGCCCCTATGAACATTTTCAA 58.978 37.500 0.00 0.00 45.01 2.69
216 217 4.608269 TCATGCCCCTATGAACATTTTCA 58.392 39.130 0.00 0.00 45.93 2.69
217 218 5.796424 ATCATGCCCCTATGAACATTTTC 57.204 39.130 0.00 0.00 40.21 2.29
218 219 5.241506 CGTATCATGCCCCTATGAACATTTT 59.758 40.000 0.00 0.00 40.21 1.82
219 220 4.761739 CGTATCATGCCCCTATGAACATTT 59.238 41.667 0.00 0.00 40.21 2.32
220 221 4.202461 ACGTATCATGCCCCTATGAACATT 60.202 41.667 0.00 0.00 40.21 2.71
221 222 3.327757 ACGTATCATGCCCCTATGAACAT 59.672 43.478 0.00 0.00 40.21 2.71
222 223 2.703536 ACGTATCATGCCCCTATGAACA 59.296 45.455 0.00 0.00 40.21 3.18
223 224 3.402628 ACGTATCATGCCCCTATGAAC 57.597 47.619 0.00 0.00 40.21 3.18
224 225 3.495983 CCAACGTATCATGCCCCTATGAA 60.496 47.826 0.00 0.00 40.21 2.57
225 226 2.038426 CCAACGTATCATGCCCCTATGA 59.962 50.000 0.00 0.00 41.00 2.15
226 227 2.426522 CCAACGTATCATGCCCCTATG 58.573 52.381 0.00 0.00 0.00 2.23
227 228 1.351017 CCCAACGTATCATGCCCCTAT 59.649 52.381 0.00 0.00 0.00 2.57
228 229 0.762418 CCCAACGTATCATGCCCCTA 59.238 55.000 0.00 0.00 0.00 3.53
229 230 0.986019 TCCCAACGTATCATGCCCCT 60.986 55.000 0.00 0.00 0.00 4.79
230 231 0.106918 TTCCCAACGTATCATGCCCC 60.107 55.000 0.00 0.00 0.00 5.80
231 232 1.981256 ATTCCCAACGTATCATGCCC 58.019 50.000 0.00 0.00 0.00 5.36
232 233 2.034558 CCAATTCCCAACGTATCATGCC 59.965 50.000 0.00 0.00 0.00 4.40
233 234 2.948979 TCCAATTCCCAACGTATCATGC 59.051 45.455 0.00 0.00 0.00 4.06
234 235 3.003689 GCTCCAATTCCCAACGTATCATG 59.996 47.826 0.00 0.00 0.00 3.07
235 236 3.214328 GCTCCAATTCCCAACGTATCAT 58.786 45.455 0.00 0.00 0.00 2.45
236 237 2.026729 TGCTCCAATTCCCAACGTATCA 60.027 45.455 0.00 0.00 0.00 2.15
237 238 2.639065 TGCTCCAATTCCCAACGTATC 58.361 47.619 0.00 0.00 0.00 2.24
238 239 2.799126 TGCTCCAATTCCCAACGTAT 57.201 45.000 0.00 0.00 0.00 3.06
239 240 2.290641 ACATGCTCCAATTCCCAACGTA 60.291 45.455 0.00 0.00 0.00 3.57
240 241 1.176527 CATGCTCCAATTCCCAACGT 58.823 50.000 0.00 0.00 0.00 3.99
241 242 1.133025 GACATGCTCCAATTCCCAACG 59.867 52.381 0.00 0.00 0.00 4.10
242 243 2.170166 TGACATGCTCCAATTCCCAAC 58.830 47.619 0.00 0.00 0.00 3.77
243 244 2.601240 TGACATGCTCCAATTCCCAA 57.399 45.000 0.00 0.00 0.00 4.12
244 245 2.832643 ATGACATGCTCCAATTCCCA 57.167 45.000 0.00 0.00 0.00 4.37
245 246 3.025978 TGAATGACATGCTCCAATTCCC 58.974 45.455 0.00 0.00 0.00 3.97
246 247 4.931661 ATGAATGACATGCTCCAATTCC 57.068 40.909 0.00 0.00 37.87 3.01
247 248 7.977853 ACTTTTATGAATGACATGCTCCAATTC 59.022 33.333 0.00 0.00 39.77 2.17
248 249 7.844009 ACTTTTATGAATGACATGCTCCAATT 58.156 30.769 0.00 0.00 39.77 2.32
249 250 7.414222 ACTTTTATGAATGACATGCTCCAAT 57.586 32.000 0.00 0.00 39.77 3.16
250 251 6.839124 ACTTTTATGAATGACATGCTCCAA 57.161 33.333 0.00 0.00 39.77 3.53
251 252 6.433716 TCAACTTTTATGAATGACATGCTCCA 59.566 34.615 0.00 0.00 39.77 3.86
252 253 6.855836 TCAACTTTTATGAATGACATGCTCC 58.144 36.000 0.00 0.00 39.77 4.70
253 254 7.484007 CACTCAACTTTTATGAATGACATGCTC 59.516 37.037 0.00 0.00 39.77 4.26
254 255 7.040201 ACACTCAACTTTTATGAATGACATGCT 60.040 33.333 0.00 0.00 39.77 3.79
255 256 7.086376 ACACTCAACTTTTATGAATGACATGC 58.914 34.615 0.00 0.00 39.77 4.06
256 257 9.546909 GTACACTCAACTTTTATGAATGACATG 57.453 33.333 0.00 0.00 39.77 3.21
257 258 9.283768 TGTACACTCAACTTTTATGAATGACAT 57.716 29.630 0.00 0.00 42.39 3.06
258 259 8.669946 TGTACACTCAACTTTTATGAATGACA 57.330 30.769 0.00 0.00 29.27 3.58
259 260 9.546909 CATGTACACTCAACTTTTATGAATGAC 57.453 33.333 0.00 0.00 29.27 3.06
260 261 9.283768 ACATGTACACTCAACTTTTATGAATGA 57.716 29.630 0.00 0.00 29.27 2.57
261 262 9.333497 CACATGTACACTCAACTTTTATGAATG 57.667 33.333 0.00 0.00 30.78 2.67
262 263 9.066892 ACACATGTACACTCAACTTTTATGAAT 57.933 29.630 0.00 0.00 0.00 2.57
263 264 8.445275 ACACATGTACACTCAACTTTTATGAA 57.555 30.769 0.00 0.00 0.00 2.57
264 265 9.719355 ATACACATGTACACTCAACTTTTATGA 57.281 29.630 0.00 0.00 32.72 2.15
268 269 8.682710 ACAAATACACATGTACACTCAACTTTT 58.317 29.630 0.00 0.00 32.72 2.27
269 270 8.128582 CACAAATACACATGTACACTCAACTTT 58.871 33.333 0.00 0.00 32.72 2.66
270 271 7.497579 TCACAAATACACATGTACACTCAACTT 59.502 33.333 0.00 0.00 32.72 2.66
271 272 6.989759 TCACAAATACACATGTACACTCAACT 59.010 34.615 0.00 0.00 32.72 3.16
272 273 7.184800 TCACAAATACACATGTACACTCAAC 57.815 36.000 0.00 0.00 32.72 3.18
273 274 6.073276 GCTCACAAATACACATGTACACTCAA 60.073 38.462 0.00 0.00 32.72 3.02
274 275 5.408299 GCTCACAAATACACATGTACACTCA 59.592 40.000 0.00 0.00 32.72 3.41
275 276 5.408299 TGCTCACAAATACACATGTACACTC 59.592 40.000 0.00 0.00 32.72 3.51
276 277 5.304778 TGCTCACAAATACACATGTACACT 58.695 37.500 0.00 0.00 32.72 3.55
277 278 5.605564 TGCTCACAAATACACATGTACAC 57.394 39.130 0.00 0.00 32.72 2.90
278 279 5.704978 ACATGCTCACAAATACACATGTACA 59.295 36.000 0.00 0.00 44.49 2.90
279 280 6.182039 ACATGCTCACAAATACACATGTAC 57.818 37.500 0.00 0.00 44.49 2.90
280 281 7.102993 AGTACATGCTCACAAATACACATGTA 58.897 34.615 0.00 9.01 44.49 2.29
281 282 5.939883 AGTACATGCTCACAAATACACATGT 59.060 36.000 10.80 10.80 46.97 3.21
282 283 6.426980 AGTACATGCTCACAAATACACATG 57.573 37.500 0.00 0.00 40.48 3.21
283 284 5.291858 CGAGTACATGCTCACAAATACACAT 59.708 40.000 0.00 0.00 35.33 3.21
284 285 4.625311 CGAGTACATGCTCACAAATACACA 59.375 41.667 0.00 0.00 35.33 3.72
285 286 4.625742 ACGAGTACATGCTCACAAATACAC 59.374 41.667 0.00 0.00 35.33 2.90
286 287 4.625311 CACGAGTACATGCTCACAAATACA 59.375 41.667 0.00 0.00 35.33 2.29
287 288 4.625742 ACACGAGTACATGCTCACAAATAC 59.374 41.667 0.00 0.00 35.33 1.89
288 289 4.816392 ACACGAGTACATGCTCACAAATA 58.184 39.130 0.00 0.00 35.33 1.40
289 290 3.664107 ACACGAGTACATGCTCACAAAT 58.336 40.909 0.00 0.00 35.33 2.32
290 291 3.106242 ACACGAGTACATGCTCACAAA 57.894 42.857 0.00 0.00 35.33 2.83
291 292 2.812358 ACACGAGTACATGCTCACAA 57.188 45.000 0.00 0.00 35.33 3.33
301 302 7.772812 GTTTTAAAACACGGAGTACACGAGTAC 60.773 40.741 23.12 14.41 41.61 2.73
302 303 3.988379 AAAACACGGAGTACACGAGTA 57.012 42.857 15.49 0.00 41.61 2.59
303 304 2.877043 AAAACACGGAGTACACGAGT 57.123 45.000 15.49 11.16 41.61 4.18
304 305 5.426240 GTTTTAAAACACGGAGTACACGAG 58.574 41.667 23.12 10.58 41.61 4.18
305 306 4.026968 CGTTTTAAAACACGGAGTACACGA 60.027 41.667 26.24 0.00 41.61 4.35
306 307 4.195606 CGTTTTAAAACACGGAGTACACG 58.804 43.478 26.24 8.67 41.61 4.49
315 316 7.992143 GCACTATTAAAACCGTTTTAAAACACG 59.008 33.333 25.49 18.68 45.18 4.49
316 317 8.268052 GGCACTATTAAAACCGTTTTAAAACAC 58.732 33.333 25.49 16.50 45.18 3.32
317 318 7.437565 GGGCACTATTAAAACCGTTTTAAAACA 59.562 33.333 25.49 15.87 45.18 2.83
318 319 7.095691 GGGGCACTATTAAAACCGTTTTAAAAC 60.096 37.037 25.49 19.15 45.18 2.43
319 320 6.927936 GGGGCACTATTAAAACCGTTTTAAAA 59.072 34.615 25.49 12.18 45.18 1.52
320 321 6.453943 GGGGCACTATTAAAACCGTTTTAAA 58.546 36.000 25.49 16.49 45.18 1.52
321 322 5.047448 GGGGGCACTATTAAAACCGTTTTAA 60.047 40.000 24.45 24.45 45.84 1.52
322 323 4.462132 GGGGGCACTATTAAAACCGTTTTA 59.538 41.667 11.63 11.63 34.19 1.52
323 324 3.258872 GGGGGCACTATTAAAACCGTTTT 59.741 43.478 13.58 13.58 36.67 2.43
324 325 2.827322 GGGGGCACTATTAAAACCGTTT 59.173 45.455 0.00 0.00 0.00 3.60
325 326 2.042026 AGGGGGCACTATTAAAACCGTT 59.958 45.455 0.00 0.00 0.00 4.44
326 327 1.637035 AGGGGGCACTATTAAAACCGT 59.363 47.619 0.00 0.00 0.00 4.83
327 328 2.425668 CAAGGGGGCACTATTAAAACCG 59.574 50.000 0.00 0.00 0.00 4.44
328 329 3.703921 TCAAGGGGGCACTATTAAAACC 58.296 45.455 0.00 0.00 0.00 3.27
329 330 5.420739 TGAATCAAGGGGGCACTATTAAAAC 59.579 40.000 0.00 0.00 0.00 2.43
330 331 5.420739 GTGAATCAAGGGGGCACTATTAAAA 59.579 40.000 0.00 0.00 0.00 1.52
331 332 4.953579 GTGAATCAAGGGGGCACTATTAAA 59.046 41.667 0.00 0.00 0.00 1.52
332 333 4.017958 TGTGAATCAAGGGGGCACTATTAA 60.018 41.667 0.00 0.00 0.00 1.40
333 334 3.525609 TGTGAATCAAGGGGGCACTATTA 59.474 43.478 0.00 0.00 0.00 0.98
334 335 2.311542 TGTGAATCAAGGGGGCACTATT 59.688 45.455 0.00 0.00 0.00 1.73
335 336 1.922447 TGTGAATCAAGGGGGCACTAT 59.078 47.619 0.00 0.00 0.00 2.12
336 337 1.004277 GTGTGAATCAAGGGGGCACTA 59.996 52.381 0.00 0.00 0.00 2.74
337 338 0.251341 GTGTGAATCAAGGGGGCACT 60.251 55.000 0.00 0.00 0.00 4.40
338 339 1.586154 CGTGTGAATCAAGGGGGCAC 61.586 60.000 0.00 0.00 0.00 5.01
339 340 1.303236 CGTGTGAATCAAGGGGGCA 60.303 57.895 0.00 0.00 0.00 5.36
340 341 0.394352 ATCGTGTGAATCAAGGGGGC 60.394 55.000 0.00 0.00 0.00 5.80
341 342 2.128771 AATCGTGTGAATCAAGGGGG 57.871 50.000 0.00 0.00 0.00 5.40
342 343 2.819608 ACAAATCGTGTGAATCAAGGGG 59.180 45.455 0.00 0.00 39.72 4.79
343 344 5.411361 TCTTACAAATCGTGTGAATCAAGGG 59.589 40.000 0.00 0.00 41.89 3.95
344 345 6.480524 TCTTACAAATCGTGTGAATCAAGG 57.519 37.500 0.00 0.00 41.89 3.61
345 346 6.467047 GCATCTTACAAATCGTGTGAATCAAG 59.533 38.462 0.00 0.00 41.89 3.02
346 347 6.072783 TGCATCTTACAAATCGTGTGAATCAA 60.073 34.615 0.00 0.00 41.89 2.57
347 348 5.411053 TGCATCTTACAAATCGTGTGAATCA 59.589 36.000 0.00 0.00 41.89 2.57
348 349 5.868257 TGCATCTTACAAATCGTGTGAATC 58.132 37.500 0.00 0.00 41.89 2.52
349 350 5.163723 CCTGCATCTTACAAATCGTGTGAAT 60.164 40.000 0.00 0.00 41.89 2.57
350 351 4.154015 CCTGCATCTTACAAATCGTGTGAA 59.846 41.667 0.00 0.00 41.89 3.18
351 352 3.684305 CCTGCATCTTACAAATCGTGTGA 59.316 43.478 0.00 0.00 41.89 3.58
352 353 3.684305 TCCTGCATCTTACAAATCGTGTG 59.316 43.478 0.00 0.00 41.89 3.82
353 354 3.937814 TCCTGCATCTTACAAATCGTGT 58.062 40.909 0.00 0.00 44.82 4.49
354 355 4.154015 TGTTCCTGCATCTTACAAATCGTG 59.846 41.667 0.00 0.00 0.00 4.35
355 356 4.323417 TGTTCCTGCATCTTACAAATCGT 58.677 39.130 0.00 0.00 0.00 3.73
356 357 4.944962 TGTTCCTGCATCTTACAAATCG 57.055 40.909 0.00 0.00 0.00 3.34
357 358 6.441093 TCATGTTCCTGCATCTTACAAATC 57.559 37.500 0.00 0.00 0.00 2.17
358 359 6.839124 TTCATGTTCCTGCATCTTACAAAT 57.161 33.333 0.00 0.00 0.00 2.32
359 360 6.647334 TTTCATGTTCCTGCATCTTACAAA 57.353 33.333 0.00 0.00 0.00 2.83
360 361 6.647334 TTTTCATGTTCCTGCATCTTACAA 57.353 33.333 0.00 0.00 0.00 2.41
361 362 6.647334 TTTTTCATGTTCCTGCATCTTACA 57.353 33.333 0.00 0.00 0.00 2.41
362 363 9.076596 GTTATTTTTCATGTTCCTGCATCTTAC 57.923 33.333 0.00 0.00 0.00 2.34
363 364 8.801299 TGTTATTTTTCATGTTCCTGCATCTTA 58.199 29.630 0.00 0.00 0.00 2.10
364 365 7.669427 TGTTATTTTTCATGTTCCTGCATCTT 58.331 30.769 0.00 0.00 0.00 2.40
365 366 7.230849 TGTTATTTTTCATGTTCCTGCATCT 57.769 32.000 0.00 0.00 0.00 2.90
366 367 9.241317 CTATGTTATTTTTCATGTTCCTGCATC 57.759 33.333 0.00 0.00 0.00 3.91
367 368 8.752187 ACTATGTTATTTTTCATGTTCCTGCAT 58.248 29.630 0.00 0.00 0.00 3.96
368 369 8.028354 CACTATGTTATTTTTCATGTTCCTGCA 58.972 33.333 0.00 0.00 0.00 4.41
369 370 8.243426 TCACTATGTTATTTTTCATGTTCCTGC 58.757 33.333 0.00 0.00 0.00 4.85
383 384 9.981114 TCGAACATGACATATCACTATGTTATT 57.019 29.630 0.00 0.00 46.28 1.40
416 417 6.016527 CACTATCAAACAGGCATGCTAATCAT 60.017 38.462 18.92 4.22 35.31 2.45
417 418 5.297527 CACTATCAAACAGGCATGCTAATCA 59.702 40.000 18.92 0.00 0.00 2.57
418 419 5.755813 CACTATCAAACAGGCATGCTAATC 58.244 41.667 18.92 0.00 0.00 1.75
419 420 4.037208 GCACTATCAAACAGGCATGCTAAT 59.963 41.667 18.92 0.76 0.00 1.73
420 421 3.378112 GCACTATCAAACAGGCATGCTAA 59.622 43.478 18.92 0.00 0.00 3.09
421 422 2.945008 GCACTATCAAACAGGCATGCTA 59.055 45.455 18.92 0.00 0.00 3.49
422 423 1.747355 GCACTATCAAACAGGCATGCT 59.253 47.619 18.92 0.11 0.00 3.79
423 424 1.473677 TGCACTATCAAACAGGCATGC 59.526 47.619 9.90 9.90 0.00 4.06
424 425 2.488937 TGTGCACTATCAAACAGGCATG 59.511 45.455 19.41 0.00 33.43 4.06
425 426 2.751259 CTGTGCACTATCAAACAGGCAT 59.249 45.455 19.41 0.00 37.08 4.40
426 427 2.153645 CTGTGCACTATCAAACAGGCA 58.846 47.619 19.41 0.00 37.08 4.75
427 428 2.426522 TCTGTGCACTATCAAACAGGC 58.573 47.619 19.41 0.00 40.34 4.85
428 429 5.633830 ATTTCTGTGCACTATCAAACAGG 57.366 39.130 19.41 0.00 40.34 4.00
429 430 7.584108 TGTTATTTCTGTGCACTATCAAACAG 58.416 34.615 19.41 4.30 41.11 3.16
430 431 7.503521 TGTTATTTCTGTGCACTATCAAACA 57.496 32.000 19.41 16.84 0.00 2.83
431 432 9.708222 CTATGTTATTTCTGTGCACTATCAAAC 57.292 33.333 19.41 14.67 0.00 2.93
432 433 9.448438 ACTATGTTATTTCTGTGCACTATCAAA 57.552 29.630 19.41 11.29 0.00 2.69
433 434 8.882736 CACTATGTTATTTCTGTGCACTATCAA 58.117 33.333 19.41 6.12 0.00 2.57
434 435 8.257306 TCACTATGTTATTTCTGTGCACTATCA 58.743 33.333 19.41 7.27 0.00 2.15
435 436 8.648557 TCACTATGTTATTTCTGTGCACTATC 57.351 34.615 19.41 1.56 0.00 2.08
438 439 9.049523 CATATCACTATGTTATTTCTGTGCACT 57.950 33.333 19.41 0.00 31.76 4.40
439 440 8.830580 ACATATCACTATGTTATTTCTGTGCAC 58.169 33.333 10.75 10.75 44.42 4.57
440 441 8.962884 ACATATCACTATGTTATTTCTGTGCA 57.037 30.769 0.00 0.00 44.42 4.57
441 442 9.045223 TGACATATCACTATGTTATTTCTGTGC 57.955 33.333 0.23 0.00 46.28 4.57
448 449 9.981114 TCGAACATGACATATCACTATGTTATT 57.019 29.630 0.00 0.00 46.28 1.40
450 451 9.410556 CATCGAACATGACATATCACTATGTTA 57.589 33.333 0.00 0.00 46.28 2.41
451 452 7.928167 ACATCGAACATGACATATCACTATGTT 59.072 33.333 0.00 0.00 46.28 2.71
453 454 7.880059 ACATCGAACATGACATATCACTATG 57.120 36.000 0.00 0.00 37.79 2.23
454 455 9.411801 GTAACATCGAACATGACATATCACTAT 57.588 33.333 0.00 0.00 37.79 2.12
455 456 8.410141 TGTAACATCGAACATGACATATCACTA 58.590 33.333 0.00 0.00 37.79 2.74
456 457 7.264947 TGTAACATCGAACATGACATATCACT 58.735 34.615 0.00 0.00 37.79 3.41
457 458 7.306807 CCTGTAACATCGAACATGACATATCAC 60.307 40.741 0.00 0.00 37.79 3.06
458 459 6.701400 CCTGTAACATCGAACATGACATATCA 59.299 38.462 0.00 0.00 39.83 2.15
459 460 6.923508 TCCTGTAACATCGAACATGACATATC 59.076 38.462 0.00 0.00 0.00 1.63
460 461 6.816136 TCCTGTAACATCGAACATGACATAT 58.184 36.000 0.00 0.00 0.00 1.78
461 462 6.127451 ACTCCTGTAACATCGAACATGACATA 60.127 38.462 0.00 0.00 0.00 2.29
462 463 5.084818 TCCTGTAACATCGAACATGACAT 57.915 39.130 0.00 0.00 0.00 3.06
463 464 4.021456 ACTCCTGTAACATCGAACATGACA 60.021 41.667 0.00 0.00 0.00 3.58
464 465 4.495422 ACTCCTGTAACATCGAACATGAC 58.505 43.478 0.00 0.00 0.00 3.06
465 466 4.801330 ACTCCTGTAACATCGAACATGA 57.199 40.909 0.00 0.00 0.00 3.07
466 467 5.651530 AGTACTCCTGTAACATCGAACATG 58.348 41.667 0.00 0.00 0.00 3.21
467 468 5.916661 AGTACTCCTGTAACATCGAACAT 57.083 39.130 0.00 0.00 0.00 2.71
468 469 5.717078 AAGTACTCCTGTAACATCGAACA 57.283 39.130 0.00 0.00 0.00 3.18
469 470 6.850555 ACTAAGTACTCCTGTAACATCGAAC 58.149 40.000 0.00 0.00 0.00 3.95
470 471 8.043113 TCTACTAAGTACTCCTGTAACATCGAA 58.957 37.037 0.00 0.00 0.00 3.71
471 472 7.559486 TCTACTAAGTACTCCTGTAACATCGA 58.441 38.462 0.00 0.00 0.00 3.59
472 473 7.783090 TCTACTAAGTACTCCTGTAACATCG 57.217 40.000 0.00 0.00 0.00 3.84
473 474 9.339850 TGATCTACTAAGTACTCCTGTAACATC 57.660 37.037 0.00 5.54 0.00 3.06
474 475 9.696572 TTGATCTACTAAGTACTCCTGTAACAT 57.303 33.333 0.00 0.00 0.00 2.71
475 476 9.524496 TTTGATCTACTAAGTACTCCTGTAACA 57.476 33.333 0.00 0.00 0.00 2.41
479 480 9.310449 TCTTTTTGATCTACTAAGTACTCCTGT 57.690 33.333 0.00 0.00 0.00 4.00
502 503 9.944376 TGTACTGCTAGTTTTCATAGAAATCTT 57.056 29.630 7.99 0.00 0.00 2.40
503 504 9.944376 TTGTACTGCTAGTTTTCATAGAAATCT 57.056 29.630 7.84 7.84 0.00 2.40
506 507 9.332502 TGTTTGTACTGCTAGTTTTCATAGAAA 57.667 29.630 0.00 0.00 0.00 2.52
507 508 8.896320 TGTTTGTACTGCTAGTTTTCATAGAA 57.104 30.769 0.00 0.00 0.00 2.10
508 509 8.896320 TTGTTTGTACTGCTAGTTTTCATAGA 57.104 30.769 0.00 0.00 0.00 1.98
511 512 8.082242 GGATTTGTTTGTACTGCTAGTTTTCAT 58.918 33.333 0.00 0.00 0.00 2.57
512 513 7.422399 GGATTTGTTTGTACTGCTAGTTTTCA 58.578 34.615 0.00 0.00 0.00 2.69
513 514 6.861572 GGGATTTGTTTGTACTGCTAGTTTTC 59.138 38.462 0.00 0.00 0.00 2.29
514 515 6.322712 TGGGATTTGTTTGTACTGCTAGTTTT 59.677 34.615 0.00 0.00 0.00 2.43
515 516 5.830991 TGGGATTTGTTTGTACTGCTAGTTT 59.169 36.000 0.00 0.00 0.00 2.66
516 517 5.381757 TGGGATTTGTTTGTACTGCTAGTT 58.618 37.500 0.00 0.00 0.00 2.24
517 518 4.980573 TGGGATTTGTTTGTACTGCTAGT 58.019 39.130 0.00 0.00 0.00 2.57
518 519 5.705441 TCTTGGGATTTGTTTGTACTGCTAG 59.295 40.000 0.00 0.00 0.00 3.42
519 520 5.626142 TCTTGGGATTTGTTTGTACTGCTA 58.374 37.500 0.00 0.00 0.00 3.49
520 521 4.469657 TCTTGGGATTTGTTTGTACTGCT 58.530 39.130 0.00 0.00 0.00 4.24
521 522 4.846779 TCTTGGGATTTGTTTGTACTGC 57.153 40.909 0.00 0.00 0.00 4.40
555 556 8.568732 TTTTCCTTGTAACGATTGTTTGAATC 57.431 30.769 3.03 0.00 39.54 2.52
556 557 8.934507 TTTTTCCTTGTAACGATTGTTTGAAT 57.065 26.923 3.03 0.00 39.54 2.57
622 623 3.575805 ACAAGGGCCTCTTTGATTCAAA 58.424 40.909 6.46 11.19 32.41 2.69
623 624 3.243359 ACAAGGGCCTCTTTGATTCAA 57.757 42.857 6.46 0.00 32.41 2.69
624 625 2.978156 ACAAGGGCCTCTTTGATTCA 57.022 45.000 6.46 0.00 32.41 2.57
625 626 3.425659 AGAACAAGGGCCTCTTTGATTC 58.574 45.455 6.46 8.45 32.41 2.52
626 627 3.532641 AGAACAAGGGCCTCTTTGATT 57.467 42.857 6.46 0.00 32.41 2.57
627 628 3.532641 AAGAACAAGGGCCTCTTTGAT 57.467 42.857 6.46 0.00 32.41 2.57
628 629 3.312736 AAAGAACAAGGGCCTCTTTGA 57.687 42.857 15.41 0.00 37.86 2.69
629 630 3.375782 CAAAGAACAAGGGCCTCTTTG 57.624 47.619 23.43 23.43 45.57 2.77
630 631 2.319844 CCAAAGAACAAGGGCCTCTTT 58.680 47.619 6.46 9.75 39.42 2.52
631 632 1.217942 ACCAAAGAACAAGGGCCTCTT 59.782 47.619 6.46 2.65 35.79 2.85
632 633 0.853530 ACCAAAGAACAAGGGCCTCT 59.146 50.000 6.46 0.00 0.00 3.69
633 634 0.961753 CACCAAAGAACAAGGGCCTC 59.038 55.000 6.46 0.00 0.00 4.70
634 635 0.261696 ACACCAAAGAACAAGGGCCT 59.738 50.000 0.00 0.00 0.00 5.19
635 636 0.389025 CACACCAAAGAACAAGGGCC 59.611 55.000 0.00 0.00 0.00 5.80
636 637 1.338020 CTCACACCAAAGAACAAGGGC 59.662 52.381 0.00 0.00 0.00 5.19
637 638 1.956477 CCTCACACCAAAGAACAAGGG 59.044 52.381 0.00 0.00 0.00 3.95
638 639 1.956477 CCCTCACACCAAAGAACAAGG 59.044 52.381 0.00 0.00 0.00 3.61
639 640 1.956477 CCCCTCACACCAAAGAACAAG 59.044 52.381 0.00 0.00 0.00 3.16
640 641 1.286553 ACCCCTCACACCAAAGAACAA 59.713 47.619 0.00 0.00 0.00 2.83
641 642 0.923358 ACCCCTCACACCAAAGAACA 59.077 50.000 0.00 0.00 0.00 3.18
642 643 1.318576 CACCCCTCACACCAAAGAAC 58.681 55.000 0.00 0.00 0.00 3.01
643 644 0.184933 CCACCCCTCACACCAAAGAA 59.815 55.000 0.00 0.00 0.00 2.52
644 645 0.696143 TCCACCCCTCACACCAAAGA 60.696 55.000 0.00 0.00 0.00 2.52
645 646 0.184933 TTCCACCCCTCACACCAAAG 59.815 55.000 0.00 0.00 0.00 2.77
646 647 0.631753 TTTCCACCCCTCACACCAAA 59.368 50.000 0.00 0.00 0.00 3.28
647 648 0.631753 TTTTCCACCCCTCACACCAA 59.368 50.000 0.00 0.00 0.00 3.67
648 649 0.856982 ATTTTCCACCCCTCACACCA 59.143 50.000 0.00 0.00 0.00 4.17
653 654 6.395780 TCTTGTATTATTTTCCACCCCTCA 57.604 37.500 0.00 0.00 0.00 3.86
658 659 7.009174 CGCACATTTCTTGTATTATTTTCCACC 59.991 37.037 0.00 0.00 36.57 4.61
664 665 5.654650 TCCCCGCACATTTCTTGTATTATTT 59.345 36.000 0.00 0.00 36.57 1.40
673 674 0.611618 TGCATCCCCGCACATTTCTT 60.612 50.000 0.00 0.00 36.86 2.52
682 683 3.918253 TTCACACCTGCATCCCCGC 62.918 63.158 0.00 0.00 0.00 6.13
771 1155 0.820871 TGGTTGGTTGGTTCAGTTGC 59.179 50.000 0.00 0.00 0.00 4.17
773 1157 1.828595 GGTTGGTTGGTTGGTTCAGTT 59.171 47.619 0.00 0.00 0.00 3.16
774 1158 1.480789 GGTTGGTTGGTTGGTTCAGT 58.519 50.000 0.00 0.00 0.00 3.41
775 1159 0.383949 CGGTTGGTTGGTTGGTTCAG 59.616 55.000 0.00 0.00 0.00 3.02
776 1160 1.668101 GCGGTTGGTTGGTTGGTTCA 61.668 55.000 0.00 0.00 0.00 3.18
777 1161 1.066752 GCGGTTGGTTGGTTGGTTC 59.933 57.895 0.00 0.00 0.00 3.62
796 1181 4.410400 GTGGGGTGGAAGAGGGCG 62.410 72.222 0.00 0.00 0.00 6.13
951 1343 3.067091 CTGAGCTGCTGTGGAGGT 58.933 61.111 7.01 0.00 0.00 3.85
953 1346 1.742140 CTGCTGAGCTGCTGTGGAG 60.742 63.158 7.01 6.25 0.00 3.86
954 1347 2.346365 CTGCTGAGCTGCTGTGGA 59.654 61.111 7.01 0.00 0.00 4.02
981 1376 1.078143 GGATGGACGCTGGCTCTTT 60.078 57.895 0.00 0.00 0.00 2.52
1008 1403 1.521616 GAGGAAGAGCAGGAGCAGG 59.478 63.158 0.00 0.00 45.49 4.85
1692 2102 1.615424 GAGGTGGAGGTGGGGCTAA 60.615 63.158 0.00 0.00 0.00 3.09
1703 2113 0.325671 GAGGATGGAGTGGAGGTGGA 60.326 60.000 0.00 0.00 0.00 4.02
1957 2367 0.030705 TCTGATCTCTGGGAAGGGGG 60.031 60.000 0.00 0.00 0.00 5.40
1958 2368 1.885049 TTCTGATCTCTGGGAAGGGG 58.115 55.000 0.00 0.00 0.00 4.79
1963 2378 6.546484 AGAACAAAAATTCTGATCTCTGGGA 58.454 36.000 0.00 0.00 37.54 4.37
1975 2390 5.920273 TCGCAGAATCCAAGAACAAAAATTC 59.080 36.000 0.00 0.00 0.00 2.17
2007 2422 0.517316 GCAGATCACCAACAACGTCC 59.483 55.000 0.00 0.00 0.00 4.79
2054 2469 1.880819 TAGTGGGTTCTTCGCCGTCC 61.881 60.000 0.00 0.00 0.00 4.79
2059 2474 2.418976 GGTTGATTAGTGGGTTCTTCGC 59.581 50.000 0.00 0.00 0.00 4.70
2081 2496 1.419012 CCCCCTCTCCCGTAATAAACC 59.581 57.143 0.00 0.00 0.00 3.27
2134 2549 1.911766 GGAGGGGAGAACACACGGA 60.912 63.158 0.00 0.00 0.00 4.69
2182 2602 5.016831 TGTCAGTAACATAGCAGAGGAGAA 58.983 41.667 0.00 0.00 31.20 2.87
2194 2614 9.862371 CTTGATAGAGTACTTTGTCAGTAACAT 57.138 33.333 11.76 0.00 39.86 2.71
2266 2687 4.437239 CGATTCTTAAGCATGGAGTGAGT 58.563 43.478 0.00 0.00 0.00 3.41
2274 2695 4.585364 CAACAGAGCGATTCTTAAGCATG 58.415 43.478 0.00 0.00 32.41 4.06
2287 2712 1.082300 CAAGCACAGCAACAGAGCG 60.082 57.895 0.00 0.00 40.15 5.03
2317 2742 4.169059 TGGCACATATCTAACCAAGCAT 57.831 40.909 0.00 0.00 0.00 3.79
2345 2825 4.787598 CTCTGAAAGTTTGTTTGATCCCG 58.212 43.478 0.00 0.00 33.76 5.14
2350 2830 6.265577 GCTAAAGCTCTGAAAGTTTGTTTGA 58.734 36.000 0.00 0.00 38.21 2.69
2351 2831 5.460091 GGCTAAAGCTCTGAAAGTTTGTTTG 59.540 40.000 1.39 0.00 41.70 2.93
2352 2832 5.127031 TGGCTAAAGCTCTGAAAGTTTGTTT 59.873 36.000 1.39 0.00 41.70 2.83
2353 2833 4.644685 TGGCTAAAGCTCTGAAAGTTTGTT 59.355 37.500 1.39 0.00 41.70 2.83
2354 2834 4.207165 TGGCTAAAGCTCTGAAAGTTTGT 58.793 39.130 1.39 0.00 41.70 2.83
2392 2872 4.760204 GGTACTTTCTTGCTGGCTTTCTTA 59.240 41.667 0.00 0.00 0.00 2.10
2404 2884 4.097892 ACAAAGGCAGTTGGTACTTTCTTG 59.902 41.667 5.99 0.00 31.31 3.02
2416 2900 4.519213 TGTACTTGTACACAAAGGCAGTT 58.481 39.130 9.28 0.00 35.15 3.16
2417 2901 4.145365 TGTACTTGTACACAAAGGCAGT 57.855 40.909 9.28 0.00 35.15 4.40
2419 2903 4.519213 ACTTGTACTTGTACACAAAGGCA 58.481 39.130 12.51 0.00 34.43 4.75
2420 2904 5.524646 TGTACTTGTACTTGTACACAAAGGC 59.475 40.000 19.94 6.92 42.49 4.35
2421 2905 7.254658 CCTTGTACTTGTACTTGTACACAAAGG 60.255 40.741 22.09 21.19 45.59 3.11
2422 2906 7.279313 ACCTTGTACTTGTACTTGTACACAAAG 59.721 37.037 22.09 18.14 45.59 2.77
2423 2907 7.104939 ACCTTGTACTTGTACTTGTACACAAA 58.895 34.615 22.09 12.66 45.59 2.83
2425 2909 6.224665 ACCTTGTACTTGTACTTGTACACA 57.775 37.500 22.09 15.46 45.59 3.72
2426 2910 6.865205 CCTACCTTGTACTTGTACTTGTACAC 59.135 42.308 22.09 3.37 45.59 2.90
2427 2911 6.550854 ACCTACCTTGTACTTGTACTTGTACA 59.449 38.462 19.94 19.94 44.68 2.90
2428 2912 6.986250 ACCTACCTTGTACTTGTACTTGTAC 58.014 40.000 16.56 16.56 39.37 2.90
2429 2913 8.884124 ATACCTACCTTGTACTTGTACTTGTA 57.116 34.615 11.53 8.97 0.00 2.41
2430 2914 7.787623 ATACCTACCTTGTACTTGTACTTGT 57.212 36.000 11.53 8.42 0.00 3.16
2431 2915 9.498176 AAAATACCTACCTTGTACTTGTACTTG 57.502 33.333 11.53 5.10 0.00 3.16
2432 2916 9.498176 CAAAATACCTACCTTGTACTTGTACTT 57.502 33.333 11.53 0.00 0.00 2.24
2433 2917 7.605309 GCAAAATACCTACCTTGTACTTGTACT 59.395 37.037 11.53 0.00 0.00 2.73
2434 2918 7.148356 GGCAAAATACCTACCTTGTACTTGTAC 60.148 40.741 4.14 4.14 0.00 2.90
2435 2919 6.880529 GGCAAAATACCTACCTTGTACTTGTA 59.119 38.462 0.00 0.00 0.00 2.41
2436 2920 5.708697 GGCAAAATACCTACCTTGTACTTGT 59.291 40.000 0.00 0.00 0.00 3.16
2437 2921 5.708230 TGGCAAAATACCTACCTTGTACTTG 59.292 40.000 0.00 0.00 0.00 3.16
2438 2922 5.883180 TGGCAAAATACCTACCTTGTACTT 58.117 37.500 0.00 0.00 0.00 2.24
2439 2923 5.508280 TGGCAAAATACCTACCTTGTACT 57.492 39.130 0.00 0.00 0.00 2.73
2479 2963 9.965902 ATACTCAGTCTCCAGATGTAAATTTTT 57.034 29.630 0.00 0.00 0.00 1.94
2504 2988 5.175859 CACGGTACAAAAGTCCATAGACAT 58.824 41.667 0.00 0.00 46.15 3.06
2508 2993 4.312443 ACACACGGTACAAAAGTCCATAG 58.688 43.478 0.00 0.00 0.00 2.23
2512 2997 3.200483 AGAACACACGGTACAAAAGTCC 58.800 45.455 0.00 0.00 0.00 3.85
2534 3019 6.691388 GCACGTTGATTTCTTCAAAAACTACT 59.309 34.615 0.00 0.00 45.71 2.57
2537 3022 5.288472 GTGCACGTTGATTTCTTCAAAAACT 59.712 36.000 0.00 0.00 45.71 2.66
2538 3023 5.061560 TGTGCACGTTGATTTCTTCAAAAAC 59.938 36.000 13.13 0.00 45.71 2.43
2539 3024 5.164233 TGTGCACGTTGATTTCTTCAAAAA 58.836 33.333 13.13 0.00 45.71 1.94
2540 3025 4.738124 TGTGCACGTTGATTTCTTCAAAA 58.262 34.783 13.13 0.00 45.71 2.44
2547 3033 2.166007 GCGTATGTGCACGTTGATTTC 58.834 47.619 18.34 1.13 43.79 2.17
2555 3041 0.093535 CTCAACTGCGTATGTGCACG 59.906 55.000 13.13 0.46 40.62 5.34
2584 3070 1.153920 GGGTAAAAATGGCACGCCG 60.154 57.895 3.13 0.00 39.42 6.46
2638 3124 3.951680 ACTTCGATTTTTGTCAGGTTGGT 59.048 39.130 0.00 0.00 0.00 3.67
2640 3126 6.539649 TCTACTTCGATTTTTGTCAGGTTG 57.460 37.500 0.00 0.00 0.00 3.77
2671 3157 1.842562 AGCACAGGCCTACATCTCAAT 59.157 47.619 3.98 0.00 42.56 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.