Multiple sequence alignment - TraesCS7D01G113400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G113400 chr7D 100.000 3023 0 0 1 3023 69642004 69645026 0.000000e+00 5583
1 TraesCS7D01G113400 chr7D 85.749 407 50 7 2291 2692 511051566 511051163 1.000000e-114 424
2 TraesCS7D01G113400 chr7A 93.138 2288 114 21 9 2286 76187186 76189440 0.000000e+00 3315
3 TraesCS7D01G113400 chr7A 87.286 409 47 4 2288 2692 701199773 701199366 2.120000e-126 462
4 TraesCS7D01G113400 chr7A 89.944 179 7 4 2694 2869 76189431 76189601 1.410000e-53 220
5 TraesCS7D01G113400 chr7B 92.958 1562 71 18 737 2279 12179160 12180701 0.000000e+00 2239
6 TraesCS7D01G113400 chr6D 86.199 413 48 8 2282 2690 208253806 208254213 3.580000e-119 438
7 TraesCS7D01G113400 chr6D 85.266 414 50 8 2288 2696 455503512 455503919 1.680000e-112 416
8 TraesCS7D01G113400 chr5D 86.029 408 51 5 2289 2692 552794975 552794570 1.660000e-117 433
9 TraesCS7D01G113400 chr5D 86.029 408 47 9 2288 2690 420195247 420194845 2.150000e-116 429
10 TraesCS7D01G113400 chr5D 98.980 98 1 0 2926 3023 551637974 551637877 3.100000e-40 176
11 TraesCS7D01G113400 chr5D 98.958 96 1 0 2926 3021 551685090 551684995 4.010000e-39 172
12 TraesCS7D01G113400 chr3D 85.854 410 50 7 2288 2693 508201814 508202219 2.150000e-116 429
13 TraesCS7D01G113400 chr3D 98.980 98 1 0 2926 3023 429804218 429804121 3.100000e-40 176
14 TraesCS7D01G113400 chr2A 85.472 413 50 10 2288 2695 683569818 683569411 3.600000e-114 422
15 TraesCS7D01G113400 chr1D 85.504 407 50 8 2288 2691 365299617 365299217 1.680000e-112 416
16 TraesCS7D01G113400 chr1D 98.980 98 1 0 2926 3023 281430934 281430837 3.100000e-40 176
17 TraesCS7D01G113400 chr1D 97.059 102 2 1 2922 3023 281423012 281422912 1.440000e-38 171
18 TraesCS7D01G113400 chr1D 97.059 102 2 1 2922 3023 281443593 281443493 1.440000e-38 171
19 TraesCS7D01G113400 chr4D 99.010 101 1 0 2923 3023 139124183 139124083 6.660000e-42 182
20 TraesCS7D01G113400 chr4D 98.980 98 1 0 2926 3023 303429888 303429791 3.100000e-40 176
21 TraesCS7D01G113400 chr2D 98.980 98 1 0 2926 3023 311456573 311456670 3.100000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G113400 chr7D 69642004 69645026 3022 False 5583.0 5583 100.000 1 3023 1 chr7D.!!$F1 3022
1 TraesCS7D01G113400 chr7A 76187186 76189601 2415 False 1767.5 3315 91.541 9 2869 2 chr7A.!!$F1 2860
2 TraesCS7D01G113400 chr7B 12179160 12180701 1541 False 2239.0 2239 92.958 737 2279 1 chr7B.!!$F1 1542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 523 0.533032 CGTCCTCCTTCCTTCACTCC 59.467 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2464 2490 0.031994 ATTCACGTGCTGTTTTGGCC 59.968 50.0 11.67 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.887933 GTGGACCATGGCATTTTCGT 59.112 50.000 13.04 0.00 0.00 3.85
39 40 0.887247 TGGACCATGGCATTTTCGTG 59.113 50.000 13.04 0.00 0.00 4.35
45 46 2.327568 CATGGCATTTTCGTGTGAACC 58.672 47.619 0.00 0.00 32.71 3.62
56 57 1.474320 CGTGTGAACCTTTGGAGGACA 60.474 52.381 0.00 0.00 46.74 4.02
196 197 3.016474 GCGTCCTCACTTTCGCTGC 62.016 63.158 0.00 0.00 44.28 5.25
217 218 2.424601 CGAACCCAACATGCATTCTCAT 59.575 45.455 0.00 0.00 0.00 2.90
242 243 6.942532 TTATTTCGGATGATCCCTCAAAAG 57.057 37.500 5.78 0.00 34.37 2.27
243 244 4.568072 TTTCGGATGATCCCTCAAAAGA 57.432 40.909 5.78 0.00 34.37 2.52
314 315 1.682087 GCAAACCTCCACACCCCTATC 60.682 57.143 0.00 0.00 0.00 2.08
319 320 1.974236 CCTCCACACCCCTATCTCATC 59.026 57.143 0.00 0.00 0.00 2.92
329 330 5.306419 CACCCCTATCTCATCTTCTTCATCA 59.694 44.000 0.00 0.00 0.00 3.07
331 332 6.561838 ACCCCTATCTCATCTTCTTCATCATT 59.438 38.462 0.00 0.00 0.00 2.57
344 345 1.135046 CATCATTAGAGACTGGCGCG 58.865 55.000 0.00 0.00 0.00 6.86
366 367 4.160626 CGTACCTTCTTCTTCCTCATCCTT 59.839 45.833 0.00 0.00 0.00 3.36
375 376 2.381752 TCCTCATCCTTCTCGCCATA 57.618 50.000 0.00 0.00 0.00 2.74
429 433 2.076100 CAGCGTCAAGTCAAGGCATTA 58.924 47.619 0.00 0.00 0.00 1.90
432 436 1.393539 CGTCAAGTCAAGGCATTACCG 59.606 52.381 0.00 0.00 46.52 4.02
433 437 1.737793 GTCAAGTCAAGGCATTACCGG 59.262 52.381 0.00 0.00 46.52 5.28
435 439 2.039216 TCAAGTCAAGGCATTACCGGAA 59.961 45.455 9.46 0.00 46.52 4.30
450 455 1.338674 CCGGAATGCACTAGGTTGTCA 60.339 52.381 0.00 0.00 0.00 3.58
459 464 1.066143 ACTAGGTTGTCATTGCCTCGG 60.066 52.381 0.00 0.00 34.07 4.63
492 498 3.015332 GCTCCCCTCCCTCTCCTCA 62.015 68.421 0.00 0.00 0.00 3.86
501 507 1.036707 CCCTCTCCTCATTCCTCGTC 58.963 60.000 0.00 0.00 0.00 4.20
517 523 0.533032 CGTCCTCCTTCCTTCACTCC 59.467 60.000 0.00 0.00 0.00 3.85
519 525 2.261729 GTCCTCCTTCCTTCACTCCTT 58.738 52.381 0.00 0.00 0.00 3.36
521 527 2.158158 TCCTCCTTCCTTCACTCCTTCA 60.158 50.000 0.00 0.00 0.00 3.02
526 532 3.326297 CCTTCCTTCACTCCTTCACTTCT 59.674 47.826 0.00 0.00 0.00 2.85
538 544 4.283722 TCCTTCACTTCTTCCACTAGTTCC 59.716 45.833 0.00 0.00 0.00 3.62
541 547 1.275573 ACTTCTTCCACTAGTTCCCGC 59.724 52.381 0.00 0.00 0.00 6.13
549 555 0.669625 ACTAGTTCCCGCAAGCGTTC 60.670 55.000 13.80 1.13 37.81 3.95
550 556 0.669318 CTAGTTCCCGCAAGCGTTCA 60.669 55.000 13.80 0.00 37.81 3.18
577 583 4.023107 CCAAGACTAGAGACTGAACGTTCA 60.023 45.833 28.07 28.07 35.57 3.18
578 584 4.752661 AGACTAGAGACTGAACGTTCAC 57.247 45.455 26.53 17.70 32.90 3.18
579 585 3.502979 AGACTAGAGACTGAACGTTCACC 59.497 47.826 26.53 19.73 32.90 4.02
589 595 6.710744 AGACTGAACGTTCACCTGATAAAATT 59.289 34.615 26.53 0.23 32.90 1.82
595 601 7.284919 ACGTTCACCTGATAAAATTTTCCTT 57.715 32.000 6.72 0.00 0.00 3.36
597 603 7.865889 ACGTTCACCTGATAAAATTTTCCTTTC 59.134 33.333 6.72 1.97 0.00 2.62
602 608 9.933723 CACCTGATAAAATTTTCCTTTCATCTT 57.066 29.630 6.72 0.00 0.00 2.40
665 671 5.180680 GCCCGTGTACATTCTTCTTAAACTT 59.819 40.000 0.00 0.00 0.00 2.66
668 674 7.041644 CCCGTGTACATTCTTCTTAAACTTGAA 60.042 37.037 0.00 0.00 0.00 2.69
669 675 8.339714 CCGTGTACATTCTTCTTAAACTTGAAA 58.660 33.333 0.00 0.00 0.00 2.69
670 676 9.710979 CGTGTACATTCTTCTTAAACTTGAAAA 57.289 29.630 0.00 0.00 0.00 2.29
734 740 9.650539 ATGATACATAGAAATGAGTGTATGAGC 57.349 33.333 1.99 0.00 37.76 4.26
735 741 8.641541 TGATACATAGAAATGAGTGTATGAGCA 58.358 33.333 1.99 0.00 37.76 4.26
751 759 2.670635 GCATCTGCGTCTGTACTGG 58.329 57.895 0.00 0.00 0.00 4.00
1080 1093 3.818787 CATTGCTCCGCTGCCCAC 61.819 66.667 0.00 0.00 0.00 4.61
1549 1565 1.524863 CGTGGAGTTCGGTGACCTCT 61.525 60.000 0.00 0.00 0.00 3.69
1552 1568 1.242665 GGAGTTCGGTGACCTCTCGT 61.243 60.000 0.00 0.00 0.00 4.18
1554 1570 1.154263 GTTCGGTGACCTCTCGTCG 60.154 63.158 0.00 0.00 45.23 5.12
2071 2087 5.279156 CGTCTGGTTTAACTAGGTGTACCTT 60.279 44.000 9.15 0.00 46.09 3.50
2230 2255 3.008330 GAGAGCAACATCTCACTGCATT 58.992 45.455 0.00 0.00 44.32 3.56
2232 2257 3.439476 AGAGCAACATCTCACTGCATTTC 59.561 43.478 0.00 0.00 38.58 2.17
2233 2258 3.418995 AGCAACATCTCACTGCATTTCT 58.581 40.909 0.00 0.00 38.58 2.52
2242 2268 5.125356 TCTCACTGCATTTCTTTGAGAACA 58.875 37.500 0.00 0.00 39.74 3.18
2243 2269 5.237996 TCTCACTGCATTTCTTTGAGAACAG 59.762 40.000 0.00 5.67 39.74 3.16
2280 2306 5.241728 GCAATGGACTGTCTACTTCCTTTTT 59.758 40.000 7.85 0.00 0.00 1.94
2281 2307 6.430000 GCAATGGACTGTCTACTTCCTTTTTA 59.570 38.462 7.85 0.00 0.00 1.52
2282 2308 7.573283 GCAATGGACTGTCTACTTCCTTTTTAC 60.573 40.741 7.85 0.00 0.00 2.01
2283 2309 6.488769 TGGACTGTCTACTTCCTTTTTACA 57.511 37.500 7.85 0.00 0.00 2.41
2284 2310 7.074653 TGGACTGTCTACTTCCTTTTTACAT 57.925 36.000 7.85 0.00 0.00 2.29
2285 2311 8.197592 TGGACTGTCTACTTCCTTTTTACATA 57.802 34.615 7.85 0.00 0.00 2.29
2286 2312 8.653191 TGGACTGTCTACTTCCTTTTTACATAA 58.347 33.333 7.85 0.00 0.00 1.90
2287 2313 9.668497 GGACTGTCTACTTCCTTTTTACATAAT 57.332 33.333 7.85 0.00 0.00 1.28
2292 2318 9.053840 GTCTACTTCCTTTTTACATAATAGGGC 57.946 37.037 0.00 0.00 0.00 5.19
2293 2319 6.937436 ACTTCCTTTTTACATAATAGGGCG 57.063 37.500 0.00 0.00 0.00 6.13
2294 2320 6.420638 ACTTCCTTTTTACATAATAGGGCGT 58.579 36.000 0.00 0.00 0.00 5.68
2295 2321 6.888088 ACTTCCTTTTTACATAATAGGGCGTT 59.112 34.615 0.00 0.00 0.00 4.84
2296 2322 7.395206 ACTTCCTTTTTACATAATAGGGCGTTT 59.605 33.333 0.00 0.00 0.00 3.60
2297 2323 7.324354 TCCTTTTTACATAATAGGGCGTTTC 57.676 36.000 0.00 0.00 0.00 2.78
2298 2324 6.885376 TCCTTTTTACATAATAGGGCGTTTCA 59.115 34.615 0.00 0.00 0.00 2.69
2299 2325 7.066525 TCCTTTTTACATAATAGGGCGTTTCAG 59.933 37.037 0.00 0.00 0.00 3.02
2300 2326 7.148137 CCTTTTTACATAATAGGGCGTTTCAGT 60.148 37.037 0.00 0.00 0.00 3.41
2301 2327 6.671614 TTTACATAATAGGGCGTTTCAGTG 57.328 37.500 0.00 0.00 0.00 3.66
2302 2328 2.943033 ACATAATAGGGCGTTTCAGTGC 59.057 45.455 0.00 0.00 0.00 4.40
2307 2333 2.281484 GGCGTTTCAGTGCCCAGA 60.281 61.111 0.00 0.00 45.73 3.86
2308 2334 2.617274 GGCGTTTCAGTGCCCAGAC 61.617 63.158 0.00 0.00 45.73 3.51
2309 2335 1.598130 GCGTTTCAGTGCCCAGACT 60.598 57.895 0.00 0.00 0.00 3.24
2310 2336 1.569479 GCGTTTCAGTGCCCAGACTC 61.569 60.000 0.00 0.00 0.00 3.36
2311 2337 0.249868 CGTTTCAGTGCCCAGACTCA 60.250 55.000 0.00 0.00 0.00 3.41
2312 2338 1.609061 CGTTTCAGTGCCCAGACTCAT 60.609 52.381 0.00 0.00 0.00 2.90
2313 2339 2.079925 GTTTCAGTGCCCAGACTCATC 58.920 52.381 0.00 0.00 0.00 2.92
2314 2340 1.649321 TTCAGTGCCCAGACTCATCT 58.351 50.000 0.00 0.00 34.57 2.90
2323 2349 2.816204 CAGACTCATCTGCATCCGAT 57.184 50.000 0.00 0.00 45.83 4.18
2324 2350 3.109044 CAGACTCATCTGCATCCGATT 57.891 47.619 0.00 0.00 45.83 3.34
2325 2351 4.248691 CAGACTCATCTGCATCCGATTA 57.751 45.455 0.00 0.00 45.83 1.75
2326 2352 4.236147 CAGACTCATCTGCATCCGATTAG 58.764 47.826 0.00 0.00 45.83 1.73
2327 2353 4.022503 CAGACTCATCTGCATCCGATTAGA 60.023 45.833 3.40 0.00 45.83 2.10
2328 2354 4.022416 AGACTCATCTGCATCCGATTAGAC 60.022 45.833 3.40 0.00 32.29 2.59
2329 2355 3.638627 ACTCATCTGCATCCGATTAGACA 59.361 43.478 3.40 0.00 0.00 3.41
2330 2356 4.100035 ACTCATCTGCATCCGATTAGACAA 59.900 41.667 3.40 0.00 0.00 3.18
2331 2357 5.022282 TCATCTGCATCCGATTAGACAAA 57.978 39.130 0.00 0.00 0.00 2.83
2332 2358 5.427378 TCATCTGCATCCGATTAGACAAAA 58.573 37.500 0.00 0.00 0.00 2.44
2333 2359 5.879777 TCATCTGCATCCGATTAGACAAAAA 59.120 36.000 0.00 0.00 0.00 1.94
2334 2360 6.543465 TCATCTGCATCCGATTAGACAAAAAT 59.457 34.615 0.00 0.00 0.00 1.82
2335 2361 6.757897 TCTGCATCCGATTAGACAAAAATT 57.242 33.333 0.00 0.00 0.00 1.82
2336 2362 6.785191 TCTGCATCCGATTAGACAAAAATTC 58.215 36.000 0.00 0.00 0.00 2.17
2337 2363 5.568482 TGCATCCGATTAGACAAAAATTCG 58.432 37.500 0.00 0.00 0.00 3.34
2338 2364 5.123186 TGCATCCGATTAGACAAAAATTCGT 59.877 36.000 0.00 0.00 0.00 3.85
2339 2365 6.314152 TGCATCCGATTAGACAAAAATTCGTA 59.686 34.615 0.00 0.00 0.00 3.43
2340 2366 7.148390 TGCATCCGATTAGACAAAAATTCGTAA 60.148 33.333 0.00 0.00 0.00 3.18
2341 2367 7.694784 GCATCCGATTAGACAAAAATTCGTAAA 59.305 33.333 0.00 0.00 0.00 2.01
2342 2368 9.549509 CATCCGATTAGACAAAAATTCGTAAAA 57.450 29.630 0.00 0.00 0.00 1.52
2392 2418 4.657436 TTTTTGGTGCGGTAGACAATTT 57.343 36.364 0.00 0.00 0.00 1.82
2393 2419 3.634568 TTTGGTGCGGTAGACAATTTG 57.365 42.857 0.00 0.00 0.00 2.32
2394 2420 2.552599 TGGTGCGGTAGACAATTTGA 57.447 45.000 2.79 0.00 0.00 2.69
2395 2421 3.066291 TGGTGCGGTAGACAATTTGAT 57.934 42.857 2.79 0.00 0.00 2.57
2396 2422 2.746904 TGGTGCGGTAGACAATTTGATG 59.253 45.455 2.79 0.00 0.00 3.07
2397 2423 2.747446 GGTGCGGTAGACAATTTGATGT 59.253 45.455 2.79 0.00 35.90 3.06
2398 2424 3.426159 GGTGCGGTAGACAATTTGATGTG 60.426 47.826 2.79 0.00 32.57 3.21
2399 2425 3.188460 GTGCGGTAGACAATTTGATGTGT 59.812 43.478 2.79 0.00 32.57 3.72
2400 2426 3.188254 TGCGGTAGACAATTTGATGTGTG 59.812 43.478 2.79 0.00 32.57 3.82
2401 2427 3.435327 GCGGTAGACAATTTGATGTGTGA 59.565 43.478 2.79 0.00 32.57 3.58
2402 2428 4.436050 GCGGTAGACAATTTGATGTGTGAG 60.436 45.833 2.79 0.00 32.57 3.51
2403 2429 4.093408 CGGTAGACAATTTGATGTGTGAGG 59.907 45.833 2.79 0.00 32.57 3.86
2404 2430 4.142600 GGTAGACAATTTGATGTGTGAGGC 60.143 45.833 2.79 0.00 32.57 4.70
2405 2431 2.821969 AGACAATTTGATGTGTGAGGCC 59.178 45.455 2.79 0.00 32.57 5.19
2406 2432 1.895131 ACAATTTGATGTGTGAGGCCC 59.105 47.619 0.00 0.00 30.82 5.80
2407 2433 1.135315 CAATTTGATGTGTGAGGCCCG 60.135 52.381 0.00 0.00 0.00 6.13
2408 2434 1.315257 ATTTGATGTGTGAGGCCCGC 61.315 55.000 0.00 0.00 0.00 6.13
2409 2435 2.410322 TTTGATGTGTGAGGCCCGCT 62.410 55.000 0.00 0.00 0.00 5.52
2410 2436 1.549243 TTGATGTGTGAGGCCCGCTA 61.549 55.000 0.00 0.00 0.00 4.26
2411 2437 1.521681 GATGTGTGAGGCCCGCTAC 60.522 63.158 0.00 0.00 0.00 3.58
2412 2438 2.238847 GATGTGTGAGGCCCGCTACA 62.239 60.000 0.00 0.21 0.00 2.74
2413 2439 1.836999 ATGTGTGAGGCCCGCTACAA 61.837 55.000 0.00 0.00 0.00 2.41
2414 2440 1.302192 GTGTGAGGCCCGCTACAAA 60.302 57.895 0.00 0.00 0.00 2.83
2415 2441 0.676782 GTGTGAGGCCCGCTACAAAT 60.677 55.000 0.00 0.00 0.00 2.32
2416 2442 0.037590 TGTGAGGCCCGCTACAAATT 59.962 50.000 0.00 0.00 0.00 1.82
2417 2443 1.173913 GTGAGGCCCGCTACAAATTT 58.826 50.000 0.00 0.00 0.00 1.82
2418 2444 1.132453 GTGAGGCCCGCTACAAATTTC 59.868 52.381 0.00 0.00 0.00 2.17
2419 2445 1.271652 TGAGGCCCGCTACAAATTTCA 60.272 47.619 0.00 0.00 0.00 2.69
2420 2446 1.816224 GAGGCCCGCTACAAATTTCAA 59.184 47.619 0.00 0.00 0.00 2.69
2421 2447 2.427095 GAGGCCCGCTACAAATTTCAAT 59.573 45.455 0.00 0.00 0.00 2.57
2422 2448 2.831526 AGGCCCGCTACAAATTTCAATT 59.168 40.909 0.00 0.00 0.00 2.32
2423 2449 3.260632 AGGCCCGCTACAAATTTCAATTT 59.739 39.130 0.00 0.00 39.07 1.82
2424 2450 4.464597 AGGCCCGCTACAAATTTCAATTTA 59.535 37.500 0.00 0.00 36.52 1.40
2425 2451 5.128663 AGGCCCGCTACAAATTTCAATTTAT 59.871 36.000 0.00 0.00 36.52 1.40
2426 2452 5.815222 GGCCCGCTACAAATTTCAATTTATT 59.185 36.000 0.00 0.00 36.52 1.40
2427 2453 6.315144 GGCCCGCTACAAATTTCAATTTATTT 59.685 34.615 0.00 0.00 36.52 1.40
2428 2454 7.179410 GCCCGCTACAAATTTCAATTTATTTG 58.821 34.615 12.50 12.50 43.80 2.32
2429 2455 7.676104 GCCCGCTACAAATTTCAATTTATTTGG 60.676 37.037 16.05 6.15 42.96 3.28
2430 2456 7.547370 CCCGCTACAAATTTCAATTTATTTGGA 59.453 33.333 16.05 10.24 42.96 3.53
2431 2457 8.379902 CCGCTACAAATTTCAATTTATTTGGAC 58.620 33.333 16.05 8.25 42.96 4.02
2432 2458 8.920665 CGCTACAAATTTCAATTTATTTGGACA 58.079 29.630 16.05 5.92 42.96 4.02
2439 2465 8.937634 ATTTCAATTTATTTGGACATCTGAGC 57.062 30.769 0.00 0.00 35.92 4.26
2440 2466 7.465353 TTCAATTTATTTGGACATCTGAGCA 57.535 32.000 0.00 0.00 35.92 4.26
2441 2467 7.092137 TCAATTTATTTGGACATCTGAGCAG 57.908 36.000 0.00 0.00 35.92 4.24
2442 2468 4.970662 TTTATTTGGACATCTGAGCAGC 57.029 40.909 0.00 0.00 0.00 5.25
2443 2469 2.803030 ATTTGGACATCTGAGCAGCT 57.197 45.000 0.00 0.00 0.00 4.24
2444 2470 2.105006 TTTGGACATCTGAGCAGCTC 57.895 50.000 16.21 16.21 0.00 4.09
2445 2471 1.273759 TTGGACATCTGAGCAGCTCT 58.726 50.000 23.15 2.04 0.00 4.09
2446 2472 0.822811 TGGACATCTGAGCAGCTCTC 59.177 55.000 23.15 11.57 42.23 3.20
2453 2479 3.711937 TGAGCAGCTCTCAGCAAAA 57.288 47.368 23.15 0.00 46.34 2.44
2454 2480 1.971481 TGAGCAGCTCTCAGCAAAAA 58.029 45.000 23.15 0.00 46.34 1.94
2455 2481 1.878088 TGAGCAGCTCTCAGCAAAAAG 59.122 47.619 23.15 0.00 46.34 2.27
2456 2482 2.149578 GAGCAGCTCTCAGCAAAAAGA 58.850 47.619 15.78 0.00 45.56 2.52
2457 2483 1.878734 AGCAGCTCTCAGCAAAAAGAC 59.121 47.619 0.00 0.00 45.56 3.01
2458 2484 1.605710 GCAGCTCTCAGCAAAAAGACA 59.394 47.619 0.00 0.00 45.56 3.41
2459 2485 2.033801 GCAGCTCTCAGCAAAAAGACAA 59.966 45.455 0.00 0.00 45.56 3.18
2460 2486 3.489738 GCAGCTCTCAGCAAAAAGACAAA 60.490 43.478 0.00 0.00 45.56 2.83
2461 2487 4.795308 GCAGCTCTCAGCAAAAAGACAAAT 60.795 41.667 0.00 0.00 45.56 2.32
2462 2488 4.916249 CAGCTCTCAGCAAAAAGACAAATC 59.084 41.667 0.00 0.00 45.56 2.17
2463 2489 3.910767 GCTCTCAGCAAAAAGACAAATCG 59.089 43.478 0.00 0.00 41.89 3.34
2464 2490 4.470462 CTCTCAGCAAAAAGACAAATCGG 58.530 43.478 0.00 0.00 0.00 4.18
2465 2491 3.253188 TCTCAGCAAAAAGACAAATCGGG 59.747 43.478 0.00 0.00 0.00 5.14
2466 2492 2.061028 CAGCAAAAAGACAAATCGGGC 58.939 47.619 0.00 0.00 0.00 6.13
2467 2493 1.000843 AGCAAAAAGACAAATCGGGCC 59.999 47.619 0.00 0.00 0.00 5.80
2468 2494 1.270041 GCAAAAAGACAAATCGGGCCA 60.270 47.619 4.39 0.00 0.00 5.36
2469 2495 2.804933 GCAAAAAGACAAATCGGGCCAA 60.805 45.455 4.39 0.00 0.00 4.52
2470 2496 3.462021 CAAAAAGACAAATCGGGCCAAA 58.538 40.909 4.39 0.00 0.00 3.28
2471 2497 3.828875 AAAAGACAAATCGGGCCAAAA 57.171 38.095 4.39 0.00 0.00 2.44
2472 2498 2.812358 AAGACAAATCGGGCCAAAAC 57.188 45.000 4.39 0.00 0.00 2.43
2473 2499 1.698506 AGACAAATCGGGCCAAAACA 58.301 45.000 4.39 0.00 0.00 2.83
2474 2500 1.613437 AGACAAATCGGGCCAAAACAG 59.387 47.619 4.39 0.00 0.00 3.16
2475 2501 0.033366 ACAAATCGGGCCAAAACAGC 59.967 50.000 4.39 0.00 0.00 4.40
2476 2502 0.033228 CAAATCGGGCCAAAACAGCA 59.967 50.000 4.39 0.00 0.00 4.41
2477 2503 0.033366 AAATCGGGCCAAAACAGCAC 59.967 50.000 4.39 0.00 0.00 4.40
2480 2506 2.027460 GGGCCAAAACAGCACGTG 59.973 61.111 12.28 12.28 0.00 4.49
2481 2507 2.485795 GGGCCAAAACAGCACGTGA 61.486 57.895 22.23 0.00 0.00 4.35
2482 2508 1.435515 GGCCAAAACAGCACGTGAA 59.564 52.632 22.23 0.00 0.00 3.18
2483 2509 0.031994 GGCCAAAACAGCACGTGAAT 59.968 50.000 22.23 3.35 0.00 2.57
2484 2510 1.268352 GGCCAAAACAGCACGTGAATA 59.732 47.619 22.23 0.00 0.00 1.75
2485 2511 2.584791 GCCAAAACAGCACGTGAATAG 58.415 47.619 22.23 7.58 0.00 1.73
2486 2512 2.031157 GCCAAAACAGCACGTGAATAGT 60.031 45.455 22.23 8.27 0.00 2.12
2487 2513 3.187637 GCCAAAACAGCACGTGAATAGTA 59.812 43.478 22.23 0.00 0.00 1.82
2488 2514 4.319911 GCCAAAACAGCACGTGAATAGTAA 60.320 41.667 22.23 0.00 0.00 2.24
2489 2515 5.753744 CCAAAACAGCACGTGAATAGTAAA 58.246 37.500 22.23 0.00 0.00 2.01
2490 2516 5.623673 CCAAAACAGCACGTGAATAGTAAAC 59.376 40.000 22.23 0.00 0.00 2.01
2491 2517 5.994887 AAACAGCACGTGAATAGTAAACA 57.005 34.783 22.23 0.00 0.00 2.83
2492 2518 6.554334 AAACAGCACGTGAATAGTAAACAT 57.446 33.333 22.23 0.00 0.00 2.71
2493 2519 6.554334 AACAGCACGTGAATAGTAAACATT 57.446 33.333 22.23 0.00 0.00 2.71
2494 2520 6.554334 ACAGCACGTGAATAGTAAACATTT 57.446 33.333 22.23 0.00 0.00 2.32
2495 2521 6.966021 ACAGCACGTGAATAGTAAACATTTT 58.034 32.000 22.23 0.00 0.00 1.82
2496 2522 7.422399 ACAGCACGTGAATAGTAAACATTTTT 58.578 30.769 22.23 0.00 0.00 1.94
2497 2523 8.561212 ACAGCACGTGAATAGTAAACATTTTTA 58.439 29.630 22.23 0.00 0.00 1.52
2498 2524 8.837059 CAGCACGTGAATAGTAAACATTTTTAC 58.163 33.333 22.23 6.41 45.22 2.01
2499 2525 8.561212 AGCACGTGAATAGTAAACATTTTTACA 58.439 29.630 22.23 3.98 46.66 2.41
2500 2526 8.837059 GCACGTGAATAGTAAACATTTTTACAG 58.163 33.333 22.23 2.67 46.66 2.74
2503 2529 9.537848 CGTGAATAGTAAACATTTTTACAGACC 57.462 33.333 15.08 4.46 46.66 3.85
2504 2530 9.836076 GTGAATAGTAAACATTTTTACAGACCC 57.164 33.333 15.08 3.36 46.66 4.46
2505 2531 9.016438 TGAATAGTAAACATTTTTACAGACCCC 57.984 33.333 15.08 2.54 46.66 4.95
2506 2532 8.943594 AATAGTAAACATTTTTACAGACCCCA 57.056 30.769 15.08 0.00 46.66 4.96
2507 2533 8.943594 ATAGTAAACATTTTTACAGACCCCAA 57.056 30.769 15.08 0.00 46.66 4.12
2508 2534 7.663043 AGTAAACATTTTTACAGACCCCAAA 57.337 32.000 15.08 0.00 46.66 3.28
2509 2535 8.257602 AGTAAACATTTTTACAGACCCCAAAT 57.742 30.769 15.08 0.00 46.66 2.32
2510 2536 8.710239 AGTAAACATTTTTACAGACCCCAAATT 58.290 29.630 15.08 0.00 46.66 1.82
2511 2537 9.332502 GTAAACATTTTTACAGACCCCAAATTT 57.667 29.630 9.18 0.00 44.54 1.82
2523 2549 9.008965 ACAGACCCCAAATTTATTTATTTTTGC 57.991 29.630 0.00 0.00 0.00 3.68
2524 2550 9.230122 CAGACCCCAAATTTATTTATTTTTGCT 57.770 29.630 0.00 0.00 0.00 3.91
2525 2551 9.230122 AGACCCCAAATTTATTTATTTTTGCTG 57.770 29.630 0.00 0.00 0.00 4.41
2526 2552 9.225436 GACCCCAAATTTATTTATTTTTGCTGA 57.775 29.630 0.00 0.00 0.00 4.26
2527 2553 9.230122 ACCCCAAATTTATTTATTTTTGCTGAG 57.770 29.630 0.00 0.00 0.00 3.35
2528 2554 9.447157 CCCCAAATTTATTTATTTTTGCTGAGA 57.553 29.630 0.00 0.00 0.00 3.27
2530 2556 9.977762 CCAAATTTATTTATTTTTGCTGAGAGC 57.022 29.630 0.00 0.00 42.82 4.09
2533 2559 9.591792 AATTTATTTATTTTTGCTGAGAGCTCC 57.408 29.630 10.93 2.40 42.97 4.70
2534 2560 7.944729 TTATTTATTTTTGCTGAGAGCTCCT 57.055 32.000 10.93 0.00 42.97 3.69
2535 2561 6.847421 ATTTATTTTTGCTGAGAGCTCCTT 57.153 33.333 10.93 0.00 42.97 3.36
2536 2562 7.944729 ATTTATTTTTGCTGAGAGCTCCTTA 57.055 32.000 10.93 0.00 42.97 2.69
2537 2563 6.992063 TTATTTTTGCTGAGAGCTCCTTAG 57.008 37.500 10.93 7.59 42.97 2.18
2538 2564 4.623932 TTTTTGCTGAGAGCTCCTTAGA 57.376 40.909 10.93 0.00 42.97 2.10
2539 2565 4.833478 TTTTGCTGAGAGCTCCTTAGAT 57.167 40.909 10.93 0.00 42.97 1.98
2540 2566 3.815856 TTGCTGAGAGCTCCTTAGATG 57.184 47.619 10.93 0.00 42.97 2.90
2541 2567 2.744760 TGCTGAGAGCTCCTTAGATGT 58.255 47.619 10.93 0.00 42.97 3.06
2542 2568 2.692557 TGCTGAGAGCTCCTTAGATGTC 59.307 50.000 10.93 0.00 42.97 3.06
2543 2569 2.035832 GCTGAGAGCTCCTTAGATGTCC 59.964 54.545 10.93 0.00 38.45 4.02
2544 2570 3.295093 CTGAGAGCTCCTTAGATGTCCA 58.705 50.000 10.93 0.00 30.66 4.02
2545 2571 3.703556 CTGAGAGCTCCTTAGATGTCCAA 59.296 47.826 10.93 0.00 30.66 3.53
2546 2572 4.096681 TGAGAGCTCCTTAGATGTCCAAA 58.903 43.478 10.93 0.00 30.66 3.28
2547 2573 4.718774 TGAGAGCTCCTTAGATGTCCAAAT 59.281 41.667 10.93 0.00 30.66 2.32
2548 2574 5.033589 AGAGCTCCTTAGATGTCCAAATG 57.966 43.478 10.93 0.00 0.00 2.32
2549 2575 4.718774 AGAGCTCCTTAGATGTCCAAATGA 59.281 41.667 10.93 0.00 0.00 2.57
2550 2576 5.369110 AGAGCTCCTTAGATGTCCAAATGAT 59.631 40.000 10.93 0.00 0.00 2.45
2551 2577 6.011122 AGCTCCTTAGATGTCCAAATGATT 57.989 37.500 0.00 0.00 0.00 2.57
2552 2578 6.430007 AGCTCCTTAGATGTCCAAATGATTT 58.570 36.000 0.00 0.00 0.00 2.17
2553 2579 6.320672 AGCTCCTTAGATGTCCAAATGATTTG 59.679 38.462 10.84 10.84 40.32 2.32
2554 2580 6.319658 GCTCCTTAGATGTCCAAATGATTTGA 59.680 38.462 18.82 0.00 43.26 2.69
2555 2581 7.148018 GCTCCTTAGATGTCCAAATGATTTGAA 60.148 37.037 18.82 0.00 43.26 2.69
2556 2582 8.648698 TCCTTAGATGTCCAAATGATTTGAAA 57.351 30.769 18.82 4.37 43.26 2.69
2557 2583 9.087871 TCCTTAGATGTCCAAATGATTTGAAAA 57.912 29.630 18.82 0.00 43.26 2.29
2558 2584 9.880157 CCTTAGATGTCCAAATGATTTGAAAAT 57.120 29.630 18.82 0.00 43.26 1.82
2564 2590 8.761575 TGTCCAAATGATTTGAAAATTAGAGC 57.238 30.769 18.82 2.88 43.26 4.09
2565 2591 7.541783 TGTCCAAATGATTTGAAAATTAGAGCG 59.458 33.333 18.82 0.00 43.26 5.03
2566 2592 7.009540 GTCCAAATGATTTGAAAATTAGAGCGG 59.990 37.037 18.82 0.00 43.26 5.52
2567 2593 7.035004 CCAAATGATTTGAAAATTAGAGCGGA 58.965 34.615 18.82 0.00 43.26 5.54
2568 2594 7.009540 CCAAATGATTTGAAAATTAGAGCGGAC 59.990 37.037 18.82 0.00 43.26 4.79
2569 2595 5.560966 TGATTTGAAAATTAGAGCGGACC 57.439 39.130 0.00 0.00 0.00 4.46
2570 2596 5.253330 TGATTTGAAAATTAGAGCGGACCT 58.747 37.500 0.00 0.00 0.00 3.85
2571 2597 5.354234 TGATTTGAAAATTAGAGCGGACCTC 59.646 40.000 0.00 0.00 41.07 3.85
2572 2598 3.973206 TGAAAATTAGAGCGGACCTCA 57.027 42.857 0.00 0.00 43.31 3.86
2573 2599 3.596214 TGAAAATTAGAGCGGACCTCAC 58.404 45.455 0.00 0.00 43.31 3.51
2574 2600 2.295253 AAATTAGAGCGGACCTCACG 57.705 50.000 0.00 0.00 43.31 4.35
2581 2607 4.277239 CGGACCTCACGCATCAAA 57.723 55.556 0.00 0.00 0.00 2.69
2582 2608 2.767536 CGGACCTCACGCATCAAAT 58.232 52.632 0.00 0.00 0.00 2.32
2583 2609 1.086696 CGGACCTCACGCATCAAATT 58.913 50.000 0.00 0.00 0.00 1.82
2584 2610 1.468520 CGGACCTCACGCATCAAATTT 59.531 47.619 0.00 0.00 0.00 1.82
2585 2611 2.095263 CGGACCTCACGCATCAAATTTT 60.095 45.455 0.00 0.00 0.00 1.82
2586 2612 3.126171 CGGACCTCACGCATCAAATTTTA 59.874 43.478 0.00 0.00 0.00 1.52
2587 2613 4.201910 CGGACCTCACGCATCAAATTTTAT 60.202 41.667 0.00 0.00 0.00 1.40
2588 2614 5.007234 CGGACCTCACGCATCAAATTTTATA 59.993 40.000 0.00 0.00 0.00 0.98
2589 2615 6.199393 GGACCTCACGCATCAAATTTTATAC 58.801 40.000 0.00 0.00 0.00 1.47
2590 2616 6.131544 ACCTCACGCATCAAATTTTATACC 57.868 37.500 0.00 0.00 0.00 2.73
2591 2617 5.204833 CCTCACGCATCAAATTTTATACCG 58.795 41.667 0.00 0.00 0.00 4.02
2592 2618 4.593157 TCACGCATCAAATTTTATACCGC 58.407 39.130 0.00 0.00 0.00 5.68
2593 2619 4.095036 TCACGCATCAAATTTTATACCGCA 59.905 37.500 0.00 0.00 0.00 5.69
2594 2620 4.204168 CACGCATCAAATTTTATACCGCAC 59.796 41.667 0.00 0.00 0.00 5.34
2595 2621 4.142578 ACGCATCAAATTTTATACCGCACA 60.143 37.500 0.00 0.00 0.00 4.57
2596 2622 4.795795 CGCATCAAATTTTATACCGCACAA 59.204 37.500 0.00 0.00 0.00 3.33
2597 2623 5.458452 CGCATCAAATTTTATACCGCACAAT 59.542 36.000 0.00 0.00 0.00 2.71
2598 2624 6.019961 CGCATCAAATTTTATACCGCACAATT 60.020 34.615 0.00 0.00 0.00 2.32
2599 2625 7.463913 CGCATCAAATTTTATACCGCACAATTT 60.464 33.333 0.00 0.00 0.00 1.82
2600 2626 8.174422 GCATCAAATTTTATACCGCACAATTTT 58.826 29.630 0.00 0.00 0.00 1.82
2658 2684 2.203042 TTTTTCGTCGGCGTGGGT 60.203 55.556 10.18 0.00 39.49 4.51
2659 2685 2.535788 TTTTTCGTCGGCGTGGGTG 61.536 57.895 10.18 0.00 39.49 4.61
2663 2689 4.805231 CGTCGGCGTGGGTGCATA 62.805 66.667 6.85 0.00 36.28 3.14
2664 2690 2.203015 GTCGGCGTGGGTGCATAT 60.203 61.111 6.85 0.00 36.28 1.78
2665 2691 2.203001 TCGGCGTGGGTGCATATG 60.203 61.111 6.85 0.00 36.28 1.78
2666 2692 2.203001 CGGCGTGGGTGCATATGA 60.203 61.111 6.97 0.00 36.28 2.15
2667 2693 2.246739 CGGCGTGGGTGCATATGAG 61.247 63.158 6.97 0.00 36.28 2.90
2668 2694 2.546494 GGCGTGGGTGCATATGAGC 61.546 63.158 6.97 1.51 36.28 4.26
2669 2695 1.524621 GCGTGGGTGCATATGAGCT 60.525 57.895 6.97 0.00 34.99 4.09
2670 2696 1.502163 GCGTGGGTGCATATGAGCTC 61.502 60.000 6.82 6.82 34.99 4.09
2671 2697 1.217585 CGTGGGTGCATATGAGCTCG 61.218 60.000 9.64 7.28 34.99 5.03
2672 2698 0.882042 GTGGGTGCATATGAGCTCGG 60.882 60.000 9.64 0.00 34.99 4.63
2673 2699 1.302033 GGGTGCATATGAGCTCGGG 60.302 63.158 9.64 0.00 34.99 5.14
2674 2700 1.447643 GGTGCATATGAGCTCGGGT 59.552 57.895 9.64 0.00 34.99 5.28
2675 2701 0.882042 GGTGCATATGAGCTCGGGTG 60.882 60.000 9.64 8.35 34.99 4.61
2676 2702 0.179073 GTGCATATGAGCTCGGGTGT 60.179 55.000 9.64 0.00 34.99 4.16
2677 2703 1.068588 GTGCATATGAGCTCGGGTGTA 59.931 52.381 9.64 4.07 34.99 2.90
2678 2704 1.341209 TGCATATGAGCTCGGGTGTAG 59.659 52.381 9.64 0.00 34.99 2.74
2679 2705 1.613925 GCATATGAGCTCGGGTGTAGA 59.386 52.381 9.64 0.00 0.00 2.59
2680 2706 2.352225 GCATATGAGCTCGGGTGTAGAG 60.352 54.545 9.64 0.00 38.68 2.43
2681 2707 3.149981 CATATGAGCTCGGGTGTAGAGA 58.850 50.000 9.64 0.00 37.93 3.10
2682 2708 2.373335 ATGAGCTCGGGTGTAGAGAT 57.627 50.000 9.64 0.00 37.93 2.75
2683 2709 1.393603 TGAGCTCGGGTGTAGAGATG 58.606 55.000 9.64 0.00 37.93 2.90
2684 2710 0.671251 GAGCTCGGGTGTAGAGATGG 59.329 60.000 0.00 0.00 37.93 3.51
2685 2711 0.259065 AGCTCGGGTGTAGAGATGGA 59.741 55.000 0.00 0.00 37.93 3.41
2686 2712 1.133325 AGCTCGGGTGTAGAGATGGAT 60.133 52.381 0.00 0.00 37.93 3.41
2687 2713 1.689273 GCTCGGGTGTAGAGATGGATT 59.311 52.381 0.00 0.00 37.93 3.01
2688 2714 2.103263 GCTCGGGTGTAGAGATGGATTT 59.897 50.000 0.00 0.00 37.93 2.17
2689 2715 3.432326 GCTCGGGTGTAGAGATGGATTTT 60.432 47.826 0.00 0.00 37.93 1.82
2690 2716 4.372656 CTCGGGTGTAGAGATGGATTTTC 58.627 47.826 0.00 0.00 37.93 2.29
2691 2717 3.123804 CGGGTGTAGAGATGGATTTTCG 58.876 50.000 0.00 0.00 0.00 3.46
2692 2718 2.872858 GGGTGTAGAGATGGATTTTCGC 59.127 50.000 0.00 0.00 0.00 4.70
2693 2719 3.432326 GGGTGTAGAGATGGATTTTCGCT 60.432 47.826 0.00 0.00 0.00 4.93
2694 2720 4.192317 GGTGTAGAGATGGATTTTCGCTT 58.808 43.478 0.00 0.00 0.00 4.68
2695 2721 4.636206 GGTGTAGAGATGGATTTTCGCTTT 59.364 41.667 0.00 0.00 0.00 3.51
2696 2722 5.123979 GGTGTAGAGATGGATTTTCGCTTTT 59.876 40.000 0.00 0.00 0.00 2.27
2739 2765 0.179936 CTTCTGATGCTCCCTCCACC 59.820 60.000 0.00 0.00 0.00 4.61
2751 2777 1.552486 CCCTCCACCTCCAGTACAGAA 60.552 57.143 0.00 0.00 0.00 3.02
2753 2779 2.248248 CTCCACCTCCAGTACAGAACA 58.752 52.381 0.00 0.00 0.00 3.18
2782 2811 6.791887 AATTGTGACTGAGATATAATGCCG 57.208 37.500 0.00 0.00 0.00 5.69
2811 2840 7.665690 TGCACATTATTTGGTGTCACTAAATT 58.334 30.769 26.29 11.58 39.49 1.82
2812 2841 7.812191 TGCACATTATTTGGTGTCACTAAATTC 59.188 33.333 26.29 12.84 39.49 2.17
2813 2842 7.812191 GCACATTATTTGGTGTCACTAAATTCA 59.188 33.333 26.29 16.65 39.49 2.57
2814 2843 9.128107 CACATTATTTGGTGTCACTAAATTCAC 57.872 33.333 26.29 0.00 39.49 3.18
2815 2844 8.855110 ACATTATTTGGTGTCACTAAATTCACA 58.145 29.630 26.29 10.66 39.49 3.58
2816 2845 9.689976 CATTATTTGGTGTCACTAAATTCACAA 57.310 29.630 26.29 17.19 39.49 3.33
2869 2898 2.631418 TCTCCTAACAAGTTCGAGCG 57.369 50.000 0.00 0.00 0.00 5.03
2870 2899 2.156917 TCTCCTAACAAGTTCGAGCGA 58.843 47.619 0.00 0.00 0.00 4.93
2871 2900 2.753452 TCTCCTAACAAGTTCGAGCGAT 59.247 45.455 0.00 0.00 0.00 4.58
2872 2901 3.943381 TCTCCTAACAAGTTCGAGCGATA 59.057 43.478 0.00 0.00 0.00 2.92
2873 2902 4.579340 TCTCCTAACAAGTTCGAGCGATAT 59.421 41.667 0.00 0.00 0.00 1.63
2874 2903 5.761726 TCTCCTAACAAGTTCGAGCGATATA 59.238 40.000 0.00 0.00 0.00 0.86
2875 2904 6.430308 TCTCCTAACAAGTTCGAGCGATATAT 59.570 38.462 0.00 0.00 0.00 0.86
2876 2905 6.609533 TCCTAACAAGTTCGAGCGATATATC 58.390 40.000 2.34 2.34 0.00 1.63
2877 2906 5.800941 CCTAACAAGTTCGAGCGATATATCC 59.199 44.000 7.15 0.66 0.00 2.59
2878 2907 4.848562 ACAAGTTCGAGCGATATATCCA 57.151 40.909 7.15 0.00 0.00 3.41
2879 2908 5.196341 ACAAGTTCGAGCGATATATCCAA 57.804 39.130 7.15 0.00 0.00 3.53
2880 2909 5.784177 ACAAGTTCGAGCGATATATCCAAT 58.216 37.500 7.15 0.00 0.00 3.16
2881 2910 5.635280 ACAAGTTCGAGCGATATATCCAATG 59.365 40.000 7.15 0.00 0.00 2.82
2882 2911 4.748892 AGTTCGAGCGATATATCCAATGG 58.251 43.478 7.15 0.00 0.00 3.16
2883 2912 4.220821 AGTTCGAGCGATATATCCAATGGT 59.779 41.667 7.15 0.00 0.00 3.55
2884 2913 4.110036 TCGAGCGATATATCCAATGGTG 57.890 45.455 7.15 0.00 0.00 4.17
2885 2914 3.761752 TCGAGCGATATATCCAATGGTGA 59.238 43.478 7.15 0.00 0.00 4.02
2886 2915 3.859961 CGAGCGATATATCCAATGGTGAC 59.140 47.826 7.15 0.00 0.00 3.67
2898 2927 2.534038 TGGTGACAGCAGGGTTACA 58.466 52.632 2.50 0.00 35.01 2.41
2899 2928 0.396435 TGGTGACAGCAGGGTTACAG 59.604 55.000 2.50 0.00 35.01 2.74
2900 2929 0.685097 GGTGACAGCAGGGTTACAGA 59.315 55.000 0.00 0.00 0.00 3.41
2901 2930 1.279271 GGTGACAGCAGGGTTACAGAT 59.721 52.381 0.00 0.00 0.00 2.90
2902 2931 2.290323 GGTGACAGCAGGGTTACAGATT 60.290 50.000 0.00 0.00 0.00 2.40
2903 2932 3.412386 GTGACAGCAGGGTTACAGATTT 58.588 45.455 0.00 0.00 0.00 2.17
2904 2933 3.189287 GTGACAGCAGGGTTACAGATTTG 59.811 47.826 0.00 0.00 0.00 2.32
2905 2934 3.072330 TGACAGCAGGGTTACAGATTTGA 59.928 43.478 0.00 0.00 0.00 2.69
2906 2935 4.263462 TGACAGCAGGGTTACAGATTTGAT 60.263 41.667 0.00 0.00 0.00 2.57
2907 2936 4.012374 ACAGCAGGGTTACAGATTTGATG 58.988 43.478 0.00 0.00 0.00 3.07
2908 2937 4.012374 CAGCAGGGTTACAGATTTGATGT 58.988 43.478 0.00 0.00 34.62 3.06
2909 2938 4.460382 CAGCAGGGTTACAGATTTGATGTT 59.540 41.667 0.00 0.00 32.02 2.71
2910 2939 4.702131 AGCAGGGTTACAGATTTGATGTTC 59.298 41.667 0.00 0.00 32.02 3.18
2911 2940 4.702131 GCAGGGTTACAGATTTGATGTTCT 59.298 41.667 0.00 0.00 32.02 3.01
2912 2941 5.183904 GCAGGGTTACAGATTTGATGTTCTT 59.816 40.000 0.00 0.00 32.02 2.52
2913 2942 6.623767 GCAGGGTTACAGATTTGATGTTCTTC 60.624 42.308 0.00 0.00 32.02 2.87
2914 2943 5.946377 AGGGTTACAGATTTGATGTTCTTCC 59.054 40.000 0.00 0.00 32.02 3.46
2915 2944 5.125578 GGGTTACAGATTTGATGTTCTTCCC 59.874 44.000 0.00 0.00 32.02 3.97
2916 2945 5.710099 GGTTACAGATTTGATGTTCTTCCCA 59.290 40.000 0.00 0.00 32.02 4.37
2917 2946 6.208599 GGTTACAGATTTGATGTTCTTCCCAA 59.791 38.462 0.00 0.00 32.02 4.12
2918 2947 5.712152 ACAGATTTGATGTTCTTCCCAAC 57.288 39.130 0.00 0.00 0.00 3.77
2919 2948 5.388654 ACAGATTTGATGTTCTTCCCAACT 58.611 37.500 0.00 0.00 0.00 3.16
2920 2949 6.542821 ACAGATTTGATGTTCTTCCCAACTA 58.457 36.000 0.00 0.00 0.00 2.24
2921 2950 6.656693 ACAGATTTGATGTTCTTCCCAACTAG 59.343 38.462 0.00 0.00 0.00 2.57
2922 2951 6.881065 CAGATTTGATGTTCTTCCCAACTAGA 59.119 38.462 0.00 0.00 0.00 2.43
2923 2952 6.881602 AGATTTGATGTTCTTCCCAACTAGAC 59.118 38.462 0.00 0.00 0.00 2.59
2924 2953 5.825593 TTGATGTTCTTCCCAACTAGACT 57.174 39.130 0.00 0.00 0.00 3.24
2925 2954 5.825593 TGATGTTCTTCCCAACTAGACTT 57.174 39.130 0.00 0.00 0.00 3.01
2926 2955 5.551233 TGATGTTCTTCCCAACTAGACTTG 58.449 41.667 0.00 0.00 0.00 3.16
2927 2956 5.071788 TGATGTTCTTCCCAACTAGACTTGT 59.928 40.000 0.00 0.00 0.00 3.16
2928 2957 5.367945 TGTTCTTCCCAACTAGACTTGTT 57.632 39.130 0.00 0.00 0.00 2.83
2929 2958 5.123227 TGTTCTTCCCAACTAGACTTGTTG 58.877 41.667 19.13 19.13 42.96 3.33
2939 2968 7.787725 CAACTAGACTTGTTGGGGATATAAC 57.212 40.000 18.53 0.00 40.54 1.89
2940 2969 7.565680 CAACTAGACTTGTTGGGGATATAACT 58.434 38.462 18.53 0.00 40.54 2.24
2941 2970 8.701895 CAACTAGACTTGTTGGGGATATAACTA 58.298 37.037 18.53 0.00 40.54 2.24
2942 2971 8.247666 ACTAGACTTGTTGGGGATATAACTAC 57.752 38.462 0.00 0.00 0.00 2.73
2943 2972 8.066247 ACTAGACTTGTTGGGGATATAACTACT 58.934 37.037 0.00 0.00 0.00 2.57
2944 2973 7.125792 AGACTTGTTGGGGATATAACTACTG 57.874 40.000 0.00 0.00 0.00 2.74
2945 2974 6.099845 AGACTTGTTGGGGATATAACTACTGG 59.900 42.308 0.00 0.00 0.00 4.00
2946 2975 5.968167 ACTTGTTGGGGATATAACTACTGGA 59.032 40.000 0.00 0.00 0.00 3.86
2947 2976 6.099845 ACTTGTTGGGGATATAACTACTGGAG 59.900 42.308 0.00 0.00 0.00 3.86
2948 2977 5.535029 TGTTGGGGATATAACTACTGGAGT 58.465 41.667 0.00 0.00 41.56 3.85
2949 2978 5.601313 TGTTGGGGATATAACTACTGGAGTC 59.399 44.000 0.00 0.00 37.44 3.36
2950 2979 5.412617 TGGGGATATAACTACTGGAGTCA 57.587 43.478 0.00 0.00 37.44 3.41
2951 2980 5.145564 TGGGGATATAACTACTGGAGTCAC 58.854 45.833 0.00 0.00 37.44 3.67
2952 2981 4.527427 GGGGATATAACTACTGGAGTCACC 59.473 50.000 0.00 0.00 37.44 4.02
2953 2982 4.527427 GGGATATAACTACTGGAGTCACCC 59.473 50.000 0.00 0.00 37.44 4.61
2954 2983 4.217983 GGATATAACTACTGGAGTCACCCG 59.782 50.000 0.00 0.00 37.44 5.28
2955 2984 2.592102 TAACTACTGGAGTCACCCGT 57.408 50.000 0.00 0.00 37.44 5.28
2956 2985 1.254954 AACTACTGGAGTCACCCGTC 58.745 55.000 0.00 0.00 37.44 4.79
2957 2986 0.611340 ACTACTGGAGTCACCCGTCC 60.611 60.000 0.00 0.00 37.32 4.79
2958 2987 0.611062 CTACTGGAGTCACCCGTCCA 60.611 60.000 0.00 0.00 40.72 4.02
2960 2989 2.603473 TGGAGTCACCCGTCCAGG 60.603 66.667 0.00 0.00 37.96 4.45
2961 2990 2.283676 GGAGTCACCCGTCCAGGA 60.284 66.667 0.00 0.00 45.00 3.86
2962 2991 2.352032 GGAGTCACCCGTCCAGGAG 61.352 68.421 0.00 0.00 45.00 3.69
2963 2992 2.283966 AGTCACCCGTCCAGGAGG 60.284 66.667 1.72 1.72 45.00 4.30
2974 3003 2.772622 CAGGAGGGGCCGGGTTAT 60.773 66.667 2.18 0.00 43.43 1.89
2975 3004 2.772622 AGGAGGGGCCGGGTTATG 60.773 66.667 2.18 0.00 43.43 1.90
2976 3005 4.581093 GGAGGGGCCGGGTTATGC 62.581 72.222 2.18 0.00 0.00 3.14
2977 3006 3.489513 GAGGGGCCGGGTTATGCT 61.490 66.667 2.18 0.00 0.00 3.79
2978 3007 2.040254 AGGGGCCGGGTTATGCTA 60.040 61.111 2.18 0.00 0.00 3.49
2979 3008 1.463410 AGGGGCCGGGTTATGCTAT 60.463 57.895 2.18 0.00 0.00 2.97
2980 3009 1.303317 GGGGCCGGGTTATGCTATG 60.303 63.158 2.18 0.00 0.00 2.23
2981 3010 1.758592 GGGCCGGGTTATGCTATGA 59.241 57.895 2.18 0.00 0.00 2.15
2982 3011 0.605589 GGGCCGGGTTATGCTATGAC 60.606 60.000 2.18 0.00 0.00 3.06
2983 3012 0.949105 GGCCGGGTTATGCTATGACG 60.949 60.000 2.18 0.00 0.00 4.35
2984 3013 0.032952 GCCGGGTTATGCTATGACGA 59.967 55.000 2.18 0.00 0.00 4.20
2985 3014 1.337823 GCCGGGTTATGCTATGACGAT 60.338 52.381 2.18 0.00 0.00 3.73
2986 3015 2.607187 CCGGGTTATGCTATGACGATC 58.393 52.381 0.00 0.00 0.00 3.69
2987 3016 2.029380 CCGGGTTATGCTATGACGATCA 60.029 50.000 0.00 0.00 0.00 2.92
2988 3017 3.368427 CCGGGTTATGCTATGACGATCAT 60.368 47.826 0.00 0.00 40.72 2.45
2989 3018 3.859961 CGGGTTATGCTATGACGATCATC 59.140 47.826 4.15 0.00 38.26 2.92
2990 3019 4.618227 CGGGTTATGCTATGACGATCATCA 60.618 45.833 0.00 0.00 38.26 3.07
2991 3020 4.627467 GGGTTATGCTATGACGATCATCAC 59.373 45.833 0.00 0.00 38.26 3.06
2992 3021 5.230182 GGTTATGCTATGACGATCATCACA 58.770 41.667 0.00 0.00 38.26 3.58
2993 3022 5.871524 GGTTATGCTATGACGATCATCACAT 59.128 40.000 0.00 0.00 38.26 3.21
2994 3023 6.183360 GGTTATGCTATGACGATCATCACATG 60.183 42.308 16.74 0.00 38.26 3.21
2995 3024 4.589216 TGCTATGACGATCATCACATGA 57.411 40.909 0.00 0.00 44.55 3.07
2996 3025 4.947645 TGCTATGACGATCATCACATGAA 58.052 39.130 0.00 0.00 43.50 2.57
2997 3026 4.986659 TGCTATGACGATCATCACATGAAG 59.013 41.667 0.00 0.00 43.50 3.02
2998 3027 4.143158 GCTATGACGATCATCACATGAAGC 60.143 45.833 0.00 0.00 43.50 3.86
2999 3028 2.554142 TGACGATCATCACATGAAGCC 58.446 47.619 0.00 0.00 43.50 4.35
3000 3029 1.869767 GACGATCATCACATGAAGCCC 59.130 52.381 0.00 0.00 43.50 5.19
3001 3030 1.210234 ACGATCATCACATGAAGCCCA 59.790 47.619 0.00 0.00 43.50 5.36
3002 3031 2.291365 CGATCATCACATGAAGCCCAA 58.709 47.619 0.00 0.00 43.50 4.12
3003 3032 2.882761 CGATCATCACATGAAGCCCAAT 59.117 45.455 0.00 0.00 43.50 3.16
3004 3033 3.058432 CGATCATCACATGAAGCCCAATC 60.058 47.826 0.00 0.00 43.50 2.67
3005 3034 3.657398 TCATCACATGAAGCCCAATCT 57.343 42.857 0.00 0.00 36.11 2.40
3006 3035 3.548770 TCATCACATGAAGCCCAATCTC 58.451 45.455 0.00 0.00 36.11 2.75
3007 3036 3.054213 TCATCACATGAAGCCCAATCTCA 60.054 43.478 0.00 0.00 36.11 3.27
3008 3037 3.438216 TCACATGAAGCCCAATCTCAA 57.562 42.857 0.00 0.00 0.00 3.02
3009 3038 3.349927 TCACATGAAGCCCAATCTCAAG 58.650 45.455 0.00 0.00 0.00 3.02
3010 3039 3.087031 CACATGAAGCCCAATCTCAAGT 58.913 45.455 0.00 0.00 0.00 3.16
3011 3040 3.508793 CACATGAAGCCCAATCTCAAGTT 59.491 43.478 0.00 0.00 0.00 2.66
3012 3041 4.021719 CACATGAAGCCCAATCTCAAGTTT 60.022 41.667 0.00 0.00 0.00 2.66
3013 3042 4.021719 ACATGAAGCCCAATCTCAAGTTTG 60.022 41.667 0.00 0.00 0.00 2.93
3014 3043 3.831323 TGAAGCCCAATCTCAAGTTTGA 58.169 40.909 3.01 0.00 35.57 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.764172 CCACAATGAACAAGTGGGAAAAA 58.236 39.130 16.55 0.00 46.98 1.94
1 2 4.399004 CCACAATGAACAAGTGGGAAAA 57.601 40.909 16.55 0.00 46.98 2.29
7 8 3.305539 CCATGGTCCACAATGAACAAGTG 60.306 47.826 2.57 0.00 35.17 3.16
24 25 2.327568 GTTCACACGAAAATGCCATGG 58.672 47.619 7.63 7.63 31.43 3.66
38 39 2.441375 TGATGTCCTCCAAAGGTTCACA 59.559 45.455 0.00 0.00 43.82 3.58
39 40 3.140325 TGATGTCCTCCAAAGGTTCAC 57.860 47.619 0.00 0.00 43.82 3.18
45 46 5.005740 TCTGAACAATGATGTCCTCCAAAG 58.994 41.667 0.00 0.00 39.40 2.77
196 197 1.811965 TGAGAATGCATGTTGGGTTCG 59.188 47.619 0.00 0.00 0.00 3.95
217 218 7.613801 TCTTTTGAGGGATCATCCGAAATAAAA 59.386 33.333 0.00 1.05 37.43 1.52
248 249 4.646492 GCAACATTCTAGTCCCATCCAATT 59.354 41.667 0.00 0.00 0.00 2.32
249 250 4.210331 GCAACATTCTAGTCCCATCCAAT 58.790 43.478 0.00 0.00 0.00 3.16
251 252 2.575735 TGCAACATTCTAGTCCCATCCA 59.424 45.455 0.00 0.00 0.00 3.41
252 253 3.281727 TGCAACATTCTAGTCCCATCC 57.718 47.619 0.00 0.00 0.00 3.51
293 294 0.770557 TAGGGGTGTGGAGGTTTGCT 60.771 55.000 0.00 0.00 0.00 3.91
305 306 5.306419 TGATGAAGAAGATGAGATAGGGGTG 59.694 44.000 0.00 0.00 0.00 4.61
314 315 7.868922 CCAGTCTCTAATGATGAAGAAGATGAG 59.131 40.741 0.00 0.00 0.00 2.90
319 320 4.744137 CGCCAGTCTCTAATGATGAAGAAG 59.256 45.833 0.00 0.00 0.00 2.85
329 330 0.384669 GGTACGCGCCAGTCTCTAAT 59.615 55.000 5.73 0.00 0.00 1.73
331 332 0.679002 AAGGTACGCGCCAGTCTCTA 60.679 55.000 5.73 0.00 0.00 2.43
337 338 0.389948 AAGAAGAAGGTACGCGCCAG 60.390 55.000 5.73 0.00 0.00 4.85
344 345 5.423931 AGAAGGATGAGGAAGAAGAAGGTAC 59.576 44.000 0.00 0.00 0.00 3.34
366 367 3.648067 AGGGAAAGAATGATATGGCGAGA 59.352 43.478 0.00 0.00 0.00 4.04
375 376 5.379706 AAATCGAGGAGGGAAAGAATGAT 57.620 39.130 0.00 0.00 0.00 2.45
407 411 2.970974 GCCTTGACTTGACGCTGGC 61.971 63.158 0.00 0.00 0.00 4.85
429 433 0.690762 ACAACCTAGTGCATTCCGGT 59.309 50.000 0.00 0.00 0.00 5.28
432 436 3.428045 GCAATGACAACCTAGTGCATTCC 60.428 47.826 0.00 0.00 32.29 3.01
433 437 3.428045 GGCAATGACAACCTAGTGCATTC 60.428 47.826 0.00 0.00 33.66 2.67
435 439 2.094675 GGCAATGACAACCTAGTGCAT 58.905 47.619 0.00 0.00 33.66 3.96
450 455 1.445871 GAAACCGTTACCGAGGCAAT 58.554 50.000 0.00 0.00 35.63 3.56
459 464 1.995484 GGGAGCTAACGAAACCGTTAC 59.005 52.381 6.35 4.86 46.97 2.50
492 498 2.112190 GAAGGAAGGAGGACGAGGAAT 58.888 52.381 0.00 0.00 0.00 3.01
501 507 2.027653 GTGAAGGAGTGAAGGAAGGAGG 60.028 54.545 0.00 0.00 0.00 4.30
517 523 4.570930 GGGAACTAGTGGAAGAAGTGAAG 58.429 47.826 0.00 0.00 0.00 3.02
519 525 2.561419 CGGGAACTAGTGGAAGAAGTGA 59.439 50.000 0.00 0.00 0.00 3.41
521 527 1.275573 GCGGGAACTAGTGGAAGAAGT 59.724 52.381 0.00 0.00 0.00 3.01
526 532 0.321298 GCTTGCGGGAACTAGTGGAA 60.321 55.000 0.00 0.00 0.00 3.53
538 544 4.025401 GGTGGTGAACGCTTGCGG 62.025 66.667 19.19 1.76 0.00 5.69
541 547 0.307760 GTCTTGGTGGTGAACGCTTG 59.692 55.000 0.00 0.00 0.00 4.01
549 555 3.157881 TCAGTCTCTAGTCTTGGTGGTG 58.842 50.000 0.00 0.00 0.00 4.17
550 556 3.527507 TCAGTCTCTAGTCTTGGTGGT 57.472 47.619 0.00 0.00 0.00 4.16
627 633 3.692690 ACACGGGCCATGTAAAACTATT 58.307 40.909 1.98 0.00 0.00 1.73
711 717 9.650539 GATGCTCATACACTCATTTCTATGTAT 57.349 33.333 0.00 0.00 38.49 2.29
712 718 8.864087 AGATGCTCATACACTCATTTCTATGTA 58.136 33.333 0.00 0.00 33.34 2.29
723 729 2.123342 GACGCAGATGCTCATACACTC 58.877 52.381 2.95 0.00 39.32 3.51
732 738 0.174389 CCAGTACAGACGCAGATGCT 59.826 55.000 2.95 0.00 39.32 3.79
734 740 0.532573 ACCCAGTACAGACGCAGATG 59.467 55.000 0.00 0.00 0.00 2.90
735 741 1.066858 CAACCCAGTACAGACGCAGAT 60.067 52.381 0.00 0.00 0.00 2.90
762 770 8.890410 AAATGCAGCATTATATTATCCCTCTT 57.110 30.769 21.15 0.00 32.43 2.85
763 771 8.111545 TGAAATGCAGCATTATATTATCCCTCT 58.888 33.333 21.15 0.30 32.43 3.69
764 772 8.284945 TGAAATGCAGCATTATATTATCCCTC 57.715 34.615 21.15 10.94 32.43 4.30
765 773 8.834004 ATGAAATGCAGCATTATATTATCCCT 57.166 30.769 21.15 1.06 32.43 4.20
1779 1795 2.836360 GCCATCCATGCCCACCAG 60.836 66.667 0.00 0.00 0.00 4.00
2199 2221 6.939622 TGAGATGTTGCTCTCAAGAAAGATA 58.060 36.000 1.13 0.00 46.57 1.98
2200 2222 5.802465 TGAGATGTTGCTCTCAAGAAAGAT 58.198 37.500 1.13 0.00 46.57 2.40
2201 2223 5.219343 TGAGATGTTGCTCTCAAGAAAGA 57.781 39.130 1.13 0.00 46.57 2.52
2230 2255 6.650427 TCTGCTACTACTGTTCTCAAAGAA 57.350 37.500 0.00 0.00 0.00 2.52
2232 2257 6.183360 GCAATCTGCTACTACTGTTCTCAAAG 60.183 42.308 0.00 0.00 40.96 2.77
2233 2258 5.639506 GCAATCTGCTACTACTGTTCTCAAA 59.360 40.000 0.00 0.00 40.96 2.69
2242 2268 4.163078 AGTCCATTGCAATCTGCTACTACT 59.837 41.667 9.53 0.56 45.31 2.57
2243 2269 4.272018 CAGTCCATTGCAATCTGCTACTAC 59.728 45.833 9.53 0.00 45.31 2.73
2280 2306 4.124238 GCACTGAAACGCCCTATTATGTA 58.876 43.478 0.00 0.00 0.00 2.29
2281 2307 2.943033 GCACTGAAACGCCCTATTATGT 59.057 45.455 0.00 0.00 0.00 2.29
2282 2308 2.290641 GGCACTGAAACGCCCTATTATG 59.709 50.000 0.00 0.00 42.82 1.90
2283 2309 2.572290 GGCACTGAAACGCCCTATTAT 58.428 47.619 0.00 0.00 42.82 1.28
2284 2310 2.032680 GGCACTGAAACGCCCTATTA 57.967 50.000 0.00 0.00 42.82 0.98
2285 2311 2.868253 GGCACTGAAACGCCCTATT 58.132 52.632 0.00 0.00 42.82 1.73
2286 2312 4.637771 GGCACTGAAACGCCCTAT 57.362 55.556 0.00 0.00 42.82 2.57
2291 2317 1.569479 GAGTCTGGGCACTGAAACGC 61.569 60.000 0.00 0.00 0.00 4.84
2292 2318 0.249868 TGAGTCTGGGCACTGAAACG 60.250 55.000 0.00 0.00 0.00 3.60
2293 2319 2.079925 GATGAGTCTGGGCACTGAAAC 58.920 52.381 0.00 0.00 0.00 2.78
2294 2320 1.980765 AGATGAGTCTGGGCACTGAAA 59.019 47.619 0.00 0.00 32.13 2.69
2295 2321 1.277273 CAGATGAGTCTGGGCACTGAA 59.723 52.381 0.00 0.00 46.56 3.02
2296 2322 0.900421 CAGATGAGTCTGGGCACTGA 59.100 55.000 0.00 0.00 46.56 3.41
2297 2323 3.455328 CAGATGAGTCTGGGCACTG 57.545 57.895 0.00 0.00 46.56 3.66
2305 2331 4.022416 GTCTAATCGGATGCAGATGAGTCT 60.022 45.833 0.00 0.00 30.35 3.24
2306 2332 4.233789 GTCTAATCGGATGCAGATGAGTC 58.766 47.826 0.00 0.00 30.35 3.36
2307 2333 3.638627 TGTCTAATCGGATGCAGATGAGT 59.361 43.478 0.00 0.00 30.35 3.41
2308 2334 4.248691 TGTCTAATCGGATGCAGATGAG 57.751 45.455 0.00 0.00 0.00 2.90
2309 2335 4.670896 TTGTCTAATCGGATGCAGATGA 57.329 40.909 0.00 0.00 0.00 2.92
2310 2336 5.739752 TTTTGTCTAATCGGATGCAGATG 57.260 39.130 0.00 0.00 0.00 2.90
2311 2337 6.949352 ATTTTTGTCTAATCGGATGCAGAT 57.051 33.333 0.00 0.00 0.00 2.90
2312 2338 6.456853 CGAATTTTTGTCTAATCGGATGCAGA 60.457 38.462 0.00 0.00 0.00 4.26
2313 2339 5.678483 CGAATTTTTGTCTAATCGGATGCAG 59.322 40.000 0.00 0.00 0.00 4.41
2314 2340 5.123186 ACGAATTTTTGTCTAATCGGATGCA 59.877 36.000 0.00 0.00 0.00 3.96
2315 2341 5.569413 ACGAATTTTTGTCTAATCGGATGC 58.431 37.500 0.00 0.00 0.00 3.91
2316 2342 9.549509 TTTTACGAATTTTTGTCTAATCGGATG 57.450 29.630 0.00 0.00 0.00 3.51
2371 2397 4.098044 TCAAATTGTCTACCGCACCAAAAA 59.902 37.500 0.00 0.00 0.00 1.94
2372 2398 3.632604 TCAAATTGTCTACCGCACCAAAA 59.367 39.130 0.00 0.00 0.00 2.44
2373 2399 3.215151 TCAAATTGTCTACCGCACCAAA 58.785 40.909 0.00 0.00 0.00 3.28
2374 2400 2.852449 TCAAATTGTCTACCGCACCAA 58.148 42.857 0.00 0.00 0.00 3.67
2375 2401 2.552599 TCAAATTGTCTACCGCACCA 57.447 45.000 0.00 0.00 0.00 4.17
2376 2402 2.747446 ACATCAAATTGTCTACCGCACC 59.253 45.455 0.00 0.00 0.00 5.01
2377 2403 3.188460 ACACATCAAATTGTCTACCGCAC 59.812 43.478 0.00 0.00 0.00 5.34
2378 2404 3.188254 CACACATCAAATTGTCTACCGCA 59.812 43.478 0.00 0.00 0.00 5.69
2379 2405 3.435327 TCACACATCAAATTGTCTACCGC 59.565 43.478 0.00 0.00 0.00 5.68
2380 2406 4.093408 CCTCACACATCAAATTGTCTACCG 59.907 45.833 0.00 0.00 0.00 4.02
2381 2407 4.142600 GCCTCACACATCAAATTGTCTACC 60.143 45.833 0.00 0.00 0.00 3.18
2382 2408 4.142600 GGCCTCACACATCAAATTGTCTAC 60.143 45.833 0.00 0.00 0.00 2.59
2383 2409 4.009675 GGCCTCACACATCAAATTGTCTA 58.990 43.478 0.00 0.00 0.00 2.59
2384 2410 2.821969 GGCCTCACACATCAAATTGTCT 59.178 45.455 0.00 0.00 0.00 3.41
2385 2411 2.094545 GGGCCTCACACATCAAATTGTC 60.095 50.000 0.84 0.00 0.00 3.18
2386 2412 1.895131 GGGCCTCACACATCAAATTGT 59.105 47.619 0.84 0.00 0.00 2.71
2387 2413 1.135315 CGGGCCTCACACATCAAATTG 60.135 52.381 0.84 0.00 0.00 2.32
2388 2414 1.176527 CGGGCCTCACACATCAAATT 58.823 50.000 0.84 0.00 0.00 1.82
2389 2415 1.315257 GCGGGCCTCACACATCAAAT 61.315 55.000 0.84 0.00 0.00 2.32
2390 2416 1.971167 GCGGGCCTCACACATCAAA 60.971 57.895 0.84 0.00 0.00 2.69
2391 2417 1.549243 TAGCGGGCCTCACACATCAA 61.549 55.000 0.84 0.00 0.00 2.57
2392 2418 1.987306 TAGCGGGCCTCACACATCA 60.987 57.895 0.84 0.00 0.00 3.07
2393 2419 1.521681 GTAGCGGGCCTCACACATC 60.522 63.158 0.84 0.00 0.00 3.06
2394 2420 1.836999 TTGTAGCGGGCCTCACACAT 61.837 55.000 0.84 0.00 0.00 3.21
2395 2421 2.046009 TTTGTAGCGGGCCTCACACA 62.046 55.000 0.84 0.00 0.00 3.72
2396 2422 0.676782 ATTTGTAGCGGGCCTCACAC 60.677 55.000 0.84 0.00 0.00 3.82
2397 2423 0.037590 AATTTGTAGCGGGCCTCACA 59.962 50.000 0.84 0.00 0.00 3.58
2398 2424 1.132453 GAAATTTGTAGCGGGCCTCAC 59.868 52.381 0.84 0.00 0.00 3.51
2399 2425 1.271652 TGAAATTTGTAGCGGGCCTCA 60.272 47.619 0.84 0.00 0.00 3.86
2400 2426 1.459450 TGAAATTTGTAGCGGGCCTC 58.541 50.000 0.84 0.00 0.00 4.70
2401 2427 1.917872 TTGAAATTTGTAGCGGGCCT 58.082 45.000 0.84 0.00 0.00 5.19
2402 2428 2.959507 ATTGAAATTTGTAGCGGGCC 57.040 45.000 0.00 0.00 0.00 5.80
2403 2429 6.902224 AATAAATTGAAATTTGTAGCGGGC 57.098 33.333 10.56 0.00 38.90 6.13
2404 2430 7.547370 TCCAAATAAATTGAAATTTGTAGCGGG 59.453 33.333 10.56 5.71 41.85 6.13
2405 2431 8.379902 GTCCAAATAAATTGAAATTTGTAGCGG 58.620 33.333 10.56 6.34 41.85 5.52
2406 2432 8.920665 TGTCCAAATAAATTGAAATTTGTAGCG 58.079 29.630 10.56 5.40 41.85 4.26
2413 2439 9.374838 GCTCAGATGTCCAAATAAATTGAAATT 57.625 29.630 0.00 0.00 41.85 1.82
2414 2440 8.533657 TGCTCAGATGTCCAAATAAATTGAAAT 58.466 29.630 0.00 0.00 41.85 2.17
2415 2441 7.894708 TGCTCAGATGTCCAAATAAATTGAAA 58.105 30.769 0.00 0.00 41.85 2.69
2416 2442 7.465353 TGCTCAGATGTCCAAATAAATTGAA 57.535 32.000 0.00 0.00 41.85 2.69
2417 2443 6.405065 GCTGCTCAGATGTCCAAATAAATTGA 60.405 38.462 0.29 0.00 41.85 2.57
2418 2444 5.747197 GCTGCTCAGATGTCCAAATAAATTG 59.253 40.000 0.29 0.00 38.84 2.32
2419 2445 5.655532 AGCTGCTCAGATGTCCAAATAAATT 59.344 36.000 0.00 0.00 0.00 1.82
2420 2446 5.198965 AGCTGCTCAGATGTCCAAATAAAT 58.801 37.500 0.00 0.00 0.00 1.40
2421 2447 4.592942 AGCTGCTCAGATGTCCAAATAAA 58.407 39.130 0.00 0.00 0.00 1.40
2422 2448 4.080695 AGAGCTGCTCAGATGTCCAAATAA 60.081 41.667 29.49 0.00 32.06 1.40
2423 2449 3.453717 AGAGCTGCTCAGATGTCCAAATA 59.546 43.478 29.49 0.00 32.06 1.40
2424 2450 2.239150 AGAGCTGCTCAGATGTCCAAAT 59.761 45.455 29.49 3.19 32.06 2.32
2425 2451 1.627329 AGAGCTGCTCAGATGTCCAAA 59.373 47.619 29.49 0.00 32.06 3.28
2426 2452 1.206610 GAGAGCTGCTCAGATGTCCAA 59.793 52.381 29.49 0.00 43.38 3.53
2427 2453 0.822811 GAGAGCTGCTCAGATGTCCA 59.177 55.000 29.49 0.00 43.38 4.02
2428 2454 3.665544 GAGAGCTGCTCAGATGTCC 57.334 57.895 29.49 2.47 43.38 4.02
2436 2462 2.095819 GTCTTTTTGCTGAGAGCTGCTC 60.096 50.000 21.72 21.72 42.97 4.26
2437 2463 1.878734 GTCTTTTTGCTGAGAGCTGCT 59.121 47.619 0.00 0.00 42.97 4.24
2438 2464 1.605710 TGTCTTTTTGCTGAGAGCTGC 59.394 47.619 0.00 0.00 42.97 5.25
2439 2465 3.976793 TTGTCTTTTTGCTGAGAGCTG 57.023 42.857 0.00 0.00 42.97 4.24
2440 2466 4.320057 CGATTTGTCTTTTTGCTGAGAGCT 60.320 41.667 0.00 0.00 42.97 4.09
2441 2467 3.910767 CGATTTGTCTTTTTGCTGAGAGC 59.089 43.478 0.00 0.00 42.82 4.09
2442 2468 4.470462 CCGATTTGTCTTTTTGCTGAGAG 58.530 43.478 0.00 0.00 0.00 3.20
2443 2469 3.253188 CCCGATTTGTCTTTTTGCTGAGA 59.747 43.478 0.00 0.00 0.00 3.27
2444 2470 3.568538 CCCGATTTGTCTTTTTGCTGAG 58.431 45.455 0.00 0.00 0.00 3.35
2445 2471 2.288152 GCCCGATTTGTCTTTTTGCTGA 60.288 45.455 0.00 0.00 0.00 4.26
2446 2472 2.061028 GCCCGATTTGTCTTTTTGCTG 58.939 47.619 0.00 0.00 0.00 4.41
2447 2473 1.000843 GGCCCGATTTGTCTTTTTGCT 59.999 47.619 0.00 0.00 0.00 3.91
2448 2474 1.270041 TGGCCCGATTTGTCTTTTTGC 60.270 47.619 0.00 0.00 0.00 3.68
2449 2475 2.810439 TGGCCCGATTTGTCTTTTTG 57.190 45.000 0.00 0.00 0.00 2.44
2450 2476 3.828875 TTTGGCCCGATTTGTCTTTTT 57.171 38.095 0.00 0.00 0.00 1.94
2451 2477 3.118592 TGTTTTGGCCCGATTTGTCTTTT 60.119 39.130 0.00 0.00 0.00 2.27
2452 2478 2.432510 TGTTTTGGCCCGATTTGTCTTT 59.567 40.909 0.00 0.00 0.00 2.52
2453 2479 2.035632 TGTTTTGGCCCGATTTGTCTT 58.964 42.857 0.00 0.00 0.00 3.01
2454 2480 1.613437 CTGTTTTGGCCCGATTTGTCT 59.387 47.619 0.00 0.00 0.00 3.41
2455 2481 1.934849 GCTGTTTTGGCCCGATTTGTC 60.935 52.381 0.00 0.00 0.00 3.18
2456 2482 0.033366 GCTGTTTTGGCCCGATTTGT 59.967 50.000 0.00 0.00 0.00 2.83
2457 2483 0.033228 TGCTGTTTTGGCCCGATTTG 59.967 50.000 0.00 0.00 0.00 2.32
2458 2484 0.033366 GTGCTGTTTTGGCCCGATTT 59.967 50.000 0.00 0.00 0.00 2.17
2459 2485 1.665442 GTGCTGTTTTGGCCCGATT 59.335 52.632 0.00 0.00 0.00 3.34
2460 2486 2.625823 CGTGCTGTTTTGGCCCGAT 61.626 57.895 0.00 0.00 32.78 4.18
2461 2487 3.283684 CGTGCTGTTTTGGCCCGA 61.284 61.111 0.00 0.00 32.78 5.14
2462 2488 3.591835 ACGTGCTGTTTTGGCCCG 61.592 61.111 0.00 0.00 36.70 6.13
2463 2489 2.010582 TTCACGTGCTGTTTTGGCCC 62.011 55.000 11.67 0.00 0.00 5.80
2464 2490 0.031994 ATTCACGTGCTGTTTTGGCC 59.968 50.000 11.67 0.00 0.00 5.36
2465 2491 2.031157 ACTATTCACGTGCTGTTTTGGC 60.031 45.455 11.67 0.00 0.00 4.52
2466 2492 3.896648 ACTATTCACGTGCTGTTTTGG 57.103 42.857 11.67 0.00 0.00 3.28
2467 2493 6.195868 TGTTTACTATTCACGTGCTGTTTTG 58.804 36.000 11.67 0.00 0.00 2.44
2468 2494 6.366315 TGTTTACTATTCACGTGCTGTTTT 57.634 33.333 11.67 0.00 0.00 2.43
2469 2495 5.994887 TGTTTACTATTCACGTGCTGTTT 57.005 34.783 11.67 0.00 0.00 2.83
2470 2496 6.554334 AATGTTTACTATTCACGTGCTGTT 57.446 33.333 11.67 0.00 0.00 3.16
2471 2497 6.554334 AAATGTTTACTATTCACGTGCTGT 57.446 33.333 11.67 9.00 0.00 4.40
2472 2498 7.851822 AAAAATGTTTACTATTCACGTGCTG 57.148 32.000 11.67 3.09 0.00 4.41
2473 2499 8.561212 TGTAAAAATGTTTACTATTCACGTGCT 58.439 29.630 17.45 2.95 46.29 4.40
2474 2500 8.716619 TGTAAAAATGTTTACTATTCACGTGC 57.283 30.769 17.45 0.00 46.29 5.34
2477 2503 9.537848 GGTCTGTAAAAATGTTTACTATTCACG 57.462 33.333 17.45 0.00 46.29 4.35
2478 2504 9.836076 GGGTCTGTAAAAATGTTTACTATTCAC 57.164 33.333 17.45 8.09 46.29 3.18
2479 2505 9.016438 GGGGTCTGTAAAAATGTTTACTATTCA 57.984 33.333 17.45 0.00 46.29 2.57
2480 2506 9.016438 TGGGGTCTGTAAAAATGTTTACTATTC 57.984 33.333 17.45 6.91 46.29 1.75
2481 2507 8.943594 TGGGGTCTGTAAAAATGTTTACTATT 57.056 30.769 17.45 0.00 46.29 1.73
2482 2508 8.943594 TTGGGGTCTGTAAAAATGTTTACTAT 57.056 30.769 17.45 0.00 46.29 2.12
2483 2509 8.763984 TTTGGGGTCTGTAAAAATGTTTACTA 57.236 30.769 17.45 5.36 46.29 1.82
2484 2510 7.663043 TTTGGGGTCTGTAAAAATGTTTACT 57.337 32.000 17.45 0.00 46.29 2.24
2485 2511 8.896320 AATTTGGGGTCTGTAAAAATGTTTAC 57.104 30.769 11.06 11.06 46.31 2.01
2497 2523 9.008965 GCAAAAATAAATAAATTTGGGGTCTGT 57.991 29.630 0.00 0.00 34.25 3.41
2498 2524 9.230122 AGCAAAAATAAATAAATTTGGGGTCTG 57.770 29.630 0.00 0.00 34.25 3.51
2499 2525 9.230122 CAGCAAAAATAAATAAATTTGGGGTCT 57.770 29.630 0.00 0.00 34.25 3.85
2500 2526 9.225436 TCAGCAAAAATAAATAAATTTGGGGTC 57.775 29.630 0.00 0.00 34.25 4.46
2501 2527 9.230122 CTCAGCAAAAATAAATAAATTTGGGGT 57.770 29.630 0.00 0.00 34.25 4.95
2502 2528 9.447157 TCTCAGCAAAAATAAATAAATTTGGGG 57.553 29.630 0.00 0.00 34.25 4.96
2504 2530 9.977762 GCTCTCAGCAAAAATAAATAAATTTGG 57.022 29.630 0.00 0.00 41.89 3.28
2507 2533 9.591792 GGAGCTCTCAGCAAAAATAAATAAATT 57.408 29.630 14.64 0.00 45.56 1.82
2508 2534 8.975295 AGGAGCTCTCAGCAAAAATAAATAAAT 58.025 29.630 14.64 0.00 45.56 1.40
2509 2535 8.353423 AGGAGCTCTCAGCAAAAATAAATAAA 57.647 30.769 14.64 0.00 45.56 1.40
2510 2536 7.944729 AGGAGCTCTCAGCAAAAATAAATAA 57.055 32.000 14.64 0.00 45.56 1.40
2511 2537 7.944729 AAGGAGCTCTCAGCAAAAATAAATA 57.055 32.000 14.64 0.00 45.56 1.40
2512 2538 6.847421 AAGGAGCTCTCAGCAAAAATAAAT 57.153 33.333 14.64 0.00 45.56 1.40
2513 2539 7.168219 TCTAAGGAGCTCTCAGCAAAAATAAA 58.832 34.615 14.64 0.00 45.56 1.40
2514 2540 6.711277 TCTAAGGAGCTCTCAGCAAAAATAA 58.289 36.000 14.64 0.00 45.56 1.40
2515 2541 6.299805 TCTAAGGAGCTCTCAGCAAAAATA 57.700 37.500 14.64 0.00 45.56 1.40
2516 2542 5.171339 TCTAAGGAGCTCTCAGCAAAAAT 57.829 39.130 14.64 0.00 45.56 1.82
2517 2543 4.623932 TCTAAGGAGCTCTCAGCAAAAA 57.376 40.909 14.64 0.00 45.56 1.94
2518 2544 4.019860 ACATCTAAGGAGCTCTCAGCAAAA 60.020 41.667 14.64 0.00 45.56 2.44
2519 2545 3.517100 ACATCTAAGGAGCTCTCAGCAAA 59.483 43.478 14.64 0.00 45.56 3.68
2520 2546 3.102972 ACATCTAAGGAGCTCTCAGCAA 58.897 45.455 14.64 0.00 45.56 3.91
2521 2547 2.692557 GACATCTAAGGAGCTCTCAGCA 59.307 50.000 14.64 0.00 45.56 4.41
2522 2548 2.035832 GGACATCTAAGGAGCTCTCAGC 59.964 54.545 14.64 0.00 42.84 4.26
2523 2549 3.295093 TGGACATCTAAGGAGCTCTCAG 58.705 50.000 14.64 8.42 0.00 3.35
2524 2550 3.388552 TGGACATCTAAGGAGCTCTCA 57.611 47.619 14.64 0.00 0.00 3.27
2525 2551 4.744795 TTTGGACATCTAAGGAGCTCTC 57.255 45.455 14.64 3.76 0.00 3.20
2526 2552 4.718774 TCATTTGGACATCTAAGGAGCTCT 59.281 41.667 14.64 0.00 0.00 4.09
2527 2553 5.028549 TCATTTGGACATCTAAGGAGCTC 57.971 43.478 4.71 4.71 0.00 4.09
2528 2554 5.643421 ATCATTTGGACATCTAAGGAGCT 57.357 39.130 0.00 0.00 0.00 4.09
2529 2555 6.319658 TCAAATCATTTGGACATCTAAGGAGC 59.680 38.462 10.30 0.00 40.98 4.70
2530 2556 7.870509 TCAAATCATTTGGACATCTAAGGAG 57.129 36.000 10.30 0.00 40.98 3.69
2531 2557 8.648698 TTTCAAATCATTTGGACATCTAAGGA 57.351 30.769 10.30 0.00 40.98 3.36
2532 2558 9.880157 ATTTTCAAATCATTTGGACATCTAAGG 57.120 29.630 10.30 0.00 40.98 2.69
2538 2564 9.374838 GCTCTAATTTTCAAATCATTTGGACAT 57.625 29.630 10.30 0.00 40.98 3.06
2539 2565 7.541783 CGCTCTAATTTTCAAATCATTTGGACA 59.458 33.333 10.30 0.00 40.98 4.02
2540 2566 7.009540 CCGCTCTAATTTTCAAATCATTTGGAC 59.990 37.037 10.30 0.00 40.98 4.02
2541 2567 7.035004 CCGCTCTAATTTTCAAATCATTTGGA 58.965 34.615 10.30 0.00 40.98 3.53
2542 2568 7.009540 GTCCGCTCTAATTTTCAAATCATTTGG 59.990 37.037 10.30 0.00 40.98 3.28
2543 2569 7.009540 GGTCCGCTCTAATTTTCAAATCATTTG 59.990 37.037 3.46 3.46 41.96 2.32
2544 2570 7.035612 GGTCCGCTCTAATTTTCAAATCATTT 58.964 34.615 0.00 0.00 0.00 2.32
2545 2571 6.378280 AGGTCCGCTCTAATTTTCAAATCATT 59.622 34.615 0.00 0.00 0.00 2.57
2546 2572 5.888161 AGGTCCGCTCTAATTTTCAAATCAT 59.112 36.000 0.00 0.00 0.00 2.45
2547 2573 5.253330 AGGTCCGCTCTAATTTTCAAATCA 58.747 37.500 0.00 0.00 0.00 2.57
2548 2574 5.354234 TGAGGTCCGCTCTAATTTTCAAATC 59.646 40.000 0.00 0.00 0.00 2.17
2549 2575 5.123979 GTGAGGTCCGCTCTAATTTTCAAAT 59.876 40.000 0.00 0.00 0.00 2.32
2550 2576 4.454504 GTGAGGTCCGCTCTAATTTTCAAA 59.545 41.667 0.00 0.00 0.00 2.69
2551 2577 4.000988 GTGAGGTCCGCTCTAATTTTCAA 58.999 43.478 0.00 0.00 0.00 2.69
2552 2578 3.596214 GTGAGGTCCGCTCTAATTTTCA 58.404 45.455 0.00 0.00 0.00 2.69
2553 2579 2.603560 CGTGAGGTCCGCTCTAATTTTC 59.396 50.000 0.00 0.00 0.00 2.29
2554 2580 2.618053 CGTGAGGTCCGCTCTAATTTT 58.382 47.619 0.00 0.00 0.00 1.82
2555 2581 2.295253 CGTGAGGTCCGCTCTAATTT 57.705 50.000 0.00 0.00 0.00 1.82
2564 2590 1.086696 AATTTGATGCGTGAGGTCCG 58.913 50.000 0.00 0.00 0.00 4.79
2565 2591 3.575965 AAAATTTGATGCGTGAGGTCC 57.424 42.857 0.00 0.00 0.00 4.46
2566 2592 6.199393 GGTATAAAATTTGATGCGTGAGGTC 58.801 40.000 0.00 0.00 0.00 3.85
2567 2593 5.220777 CGGTATAAAATTTGATGCGTGAGGT 60.221 40.000 0.00 0.00 0.00 3.85
2568 2594 5.204833 CGGTATAAAATTTGATGCGTGAGG 58.795 41.667 0.00 0.00 0.00 3.86
2569 2595 4.670621 GCGGTATAAAATTTGATGCGTGAG 59.329 41.667 0.00 0.00 0.00 3.51
2570 2596 4.095036 TGCGGTATAAAATTTGATGCGTGA 59.905 37.500 0.00 0.00 0.00 4.35
2571 2597 4.204168 GTGCGGTATAAAATTTGATGCGTG 59.796 41.667 0.00 0.00 0.00 5.34
2572 2598 4.142578 TGTGCGGTATAAAATTTGATGCGT 60.143 37.500 0.00 0.00 0.00 5.24
2573 2599 4.346970 TGTGCGGTATAAAATTTGATGCG 58.653 39.130 0.00 0.00 0.00 4.73
2574 2600 6.826893 ATTGTGCGGTATAAAATTTGATGC 57.173 33.333 0.00 0.00 0.00 3.91
2641 2667 2.203042 ACCCACGCCGACGAAAAA 60.203 55.556 0.00 0.00 43.93 1.94
2642 2668 2.968156 CACCCACGCCGACGAAAA 60.968 61.111 0.00 0.00 43.93 2.29
2647 2673 2.203015 ATATGCACCCACGCCGAC 60.203 61.111 0.00 0.00 0.00 4.79
2648 2674 2.203001 CATATGCACCCACGCCGA 60.203 61.111 0.00 0.00 0.00 5.54
2649 2675 2.203001 TCATATGCACCCACGCCG 60.203 61.111 0.00 0.00 0.00 6.46
2650 2676 2.546494 GCTCATATGCACCCACGCC 61.546 63.158 0.00 0.00 0.00 5.68
2651 2677 1.502163 GAGCTCATATGCACCCACGC 61.502 60.000 9.40 0.00 34.99 5.34
2652 2678 1.217585 CGAGCTCATATGCACCCACG 61.218 60.000 15.40 0.00 34.99 4.94
2653 2679 0.882042 CCGAGCTCATATGCACCCAC 60.882 60.000 15.40 0.00 34.99 4.61
2654 2680 1.447217 CCGAGCTCATATGCACCCA 59.553 57.895 15.40 0.00 34.99 4.51
2655 2681 1.302033 CCCGAGCTCATATGCACCC 60.302 63.158 15.40 0.00 34.99 4.61
2656 2682 0.882042 CACCCGAGCTCATATGCACC 60.882 60.000 15.40 0.00 34.99 5.01
2657 2683 0.179073 ACACCCGAGCTCATATGCAC 60.179 55.000 15.40 0.00 34.99 4.57
2658 2684 1.341209 CTACACCCGAGCTCATATGCA 59.659 52.381 15.40 0.00 34.99 3.96
2659 2685 1.613925 TCTACACCCGAGCTCATATGC 59.386 52.381 15.40 0.00 0.00 3.14
2660 2686 3.149981 TCTCTACACCCGAGCTCATATG 58.850 50.000 15.40 10.33 0.00 1.78
2661 2687 3.510531 TCTCTACACCCGAGCTCATAT 57.489 47.619 15.40 0.00 0.00 1.78
2662 2688 3.149981 CATCTCTACACCCGAGCTCATA 58.850 50.000 15.40 0.00 0.00 2.15
2663 2689 1.959985 CATCTCTACACCCGAGCTCAT 59.040 52.381 15.40 0.00 0.00 2.90
2664 2690 1.393603 CATCTCTACACCCGAGCTCA 58.606 55.000 15.40 0.00 0.00 4.26
2665 2691 0.671251 CCATCTCTACACCCGAGCTC 59.329 60.000 2.73 2.73 0.00 4.09
2666 2692 0.259065 TCCATCTCTACACCCGAGCT 59.741 55.000 0.00 0.00 0.00 4.09
2667 2693 1.333177 ATCCATCTCTACACCCGAGC 58.667 55.000 0.00 0.00 0.00 5.03
2668 2694 4.372656 GAAAATCCATCTCTACACCCGAG 58.627 47.826 0.00 0.00 0.00 4.63
2669 2695 3.181479 CGAAAATCCATCTCTACACCCGA 60.181 47.826 0.00 0.00 0.00 5.14
2670 2696 3.123804 CGAAAATCCATCTCTACACCCG 58.876 50.000 0.00 0.00 0.00 5.28
2671 2697 2.872858 GCGAAAATCCATCTCTACACCC 59.127 50.000 0.00 0.00 0.00 4.61
2672 2698 3.798202 AGCGAAAATCCATCTCTACACC 58.202 45.455 0.00 0.00 0.00 4.16
2673 2699 5.803020 AAAGCGAAAATCCATCTCTACAC 57.197 39.130 0.00 0.00 0.00 2.90
2674 2700 6.817765 AAAAAGCGAAAATCCATCTCTACA 57.182 33.333 0.00 0.00 0.00 2.74
2675 2701 7.748847 TGTAAAAAGCGAAAATCCATCTCTAC 58.251 34.615 0.00 0.00 0.00 2.59
2676 2702 7.915293 TGTAAAAAGCGAAAATCCATCTCTA 57.085 32.000 0.00 0.00 0.00 2.43
2677 2703 6.817765 TGTAAAAAGCGAAAATCCATCTCT 57.182 33.333 0.00 0.00 0.00 3.10
2689 2715 9.716507 GAAGAGCAAATTATATGTAAAAAGCGA 57.283 29.630 0.00 0.00 0.00 4.93
2690 2716 9.722056 AGAAGAGCAAATTATATGTAAAAAGCG 57.278 29.630 0.00 0.00 0.00 4.68
2768 2797 5.976458 TGTGCATATCGGCATTATATCTCA 58.024 37.500 0.00 0.00 46.92 3.27
2782 2811 7.031226 AGTGACACCAAATAATGTGCATATC 57.969 36.000 0.84 0.00 35.90 1.63
2869 2898 4.940046 CCTGCTGTCACCATTGGATATATC 59.060 45.833 10.37 3.96 0.00 1.63
2870 2899 4.263639 CCCTGCTGTCACCATTGGATATAT 60.264 45.833 10.37 0.00 0.00 0.86
2871 2900 3.072915 CCCTGCTGTCACCATTGGATATA 59.927 47.826 10.37 0.00 0.00 0.86
2872 2901 2.158564 CCCTGCTGTCACCATTGGATAT 60.159 50.000 10.37 0.00 0.00 1.63
2873 2902 1.212688 CCCTGCTGTCACCATTGGATA 59.787 52.381 10.37 0.00 0.00 2.59
2874 2903 0.033796 CCCTGCTGTCACCATTGGAT 60.034 55.000 10.37 0.00 0.00 3.41
2875 2904 1.379916 CCCTGCTGTCACCATTGGA 59.620 57.895 10.37 0.00 0.00 3.53
2876 2905 0.540365 AACCCTGCTGTCACCATTGG 60.540 55.000 0.00 0.00 0.00 3.16
2877 2906 1.812571 GTAACCCTGCTGTCACCATTG 59.187 52.381 0.00 0.00 0.00 2.82
2878 2907 1.423541 TGTAACCCTGCTGTCACCATT 59.576 47.619 0.00 0.00 0.00 3.16
2879 2908 1.003580 CTGTAACCCTGCTGTCACCAT 59.996 52.381 0.00 0.00 0.00 3.55
2880 2909 0.396435 CTGTAACCCTGCTGTCACCA 59.604 55.000 0.00 0.00 0.00 4.17
2881 2910 0.685097 TCTGTAACCCTGCTGTCACC 59.315 55.000 0.00 0.00 0.00 4.02
2882 2911 2.770164 ATCTGTAACCCTGCTGTCAC 57.230 50.000 0.00 0.00 0.00 3.67
2883 2912 3.072330 TCAAATCTGTAACCCTGCTGTCA 59.928 43.478 0.00 0.00 0.00 3.58
2884 2913 3.674997 TCAAATCTGTAACCCTGCTGTC 58.325 45.455 0.00 0.00 0.00 3.51
2885 2914 3.788227 TCAAATCTGTAACCCTGCTGT 57.212 42.857 0.00 0.00 0.00 4.40
2886 2915 4.012374 ACATCAAATCTGTAACCCTGCTG 58.988 43.478 0.00 0.00 0.00 4.41
2887 2916 4.307032 ACATCAAATCTGTAACCCTGCT 57.693 40.909 0.00 0.00 0.00 4.24
2888 2917 4.702131 AGAACATCAAATCTGTAACCCTGC 59.298 41.667 0.00 0.00 0.00 4.85
2889 2918 6.127897 GGAAGAACATCAAATCTGTAACCCTG 60.128 42.308 0.00 0.00 0.00 4.45
2890 2919 5.946377 GGAAGAACATCAAATCTGTAACCCT 59.054 40.000 0.00 0.00 0.00 4.34
2891 2920 5.125578 GGGAAGAACATCAAATCTGTAACCC 59.874 44.000 0.00 0.00 0.00 4.11
2892 2921 5.710099 TGGGAAGAACATCAAATCTGTAACC 59.290 40.000 0.00 0.00 0.00 2.85
2893 2922 6.817765 TGGGAAGAACATCAAATCTGTAAC 57.182 37.500 0.00 0.00 0.00 2.50
2894 2923 7.004086 AGTTGGGAAGAACATCAAATCTGTAA 58.996 34.615 0.00 0.00 0.00 2.41
2895 2924 6.542821 AGTTGGGAAGAACATCAAATCTGTA 58.457 36.000 0.00 0.00 0.00 2.74
2896 2925 5.388654 AGTTGGGAAGAACATCAAATCTGT 58.611 37.500 0.00 0.00 0.00 3.41
2897 2926 5.972107 AGTTGGGAAGAACATCAAATCTG 57.028 39.130 0.00 0.00 0.00 2.90
2898 2927 6.881602 GTCTAGTTGGGAAGAACATCAAATCT 59.118 38.462 0.00 0.00 0.00 2.40
2899 2928 6.881602 AGTCTAGTTGGGAAGAACATCAAATC 59.118 38.462 0.00 0.00 0.00 2.17
2900 2929 6.784031 AGTCTAGTTGGGAAGAACATCAAAT 58.216 36.000 0.00 0.00 0.00 2.32
2901 2930 6.187727 AGTCTAGTTGGGAAGAACATCAAA 57.812 37.500 0.00 0.00 0.00 2.69
2902 2931 5.825593 AGTCTAGTTGGGAAGAACATCAA 57.174 39.130 0.00 0.00 0.00 2.57
2903 2932 5.071788 ACAAGTCTAGTTGGGAAGAACATCA 59.928 40.000 2.80 0.00 0.00 3.07
2904 2933 5.552178 ACAAGTCTAGTTGGGAAGAACATC 58.448 41.667 2.80 0.00 0.00 3.06
2905 2934 5.568620 ACAAGTCTAGTTGGGAAGAACAT 57.431 39.130 2.80 0.00 0.00 2.71
2906 2935 5.123227 CAACAAGTCTAGTTGGGAAGAACA 58.877 41.667 2.80 0.00 41.92 3.18
2907 2936 5.674933 CAACAAGTCTAGTTGGGAAGAAC 57.325 43.478 2.80 0.00 41.92 3.01
2915 2944 7.565680 AGTTATATCCCCAACAAGTCTAGTTG 58.434 38.462 0.00 0.00 44.47 3.16
2916 2945 7.750947 AGTTATATCCCCAACAAGTCTAGTT 57.249 36.000 0.00 0.00 0.00 2.24
2917 2946 8.066247 AGTAGTTATATCCCCAACAAGTCTAGT 58.934 37.037 0.00 0.00 0.00 2.57
2918 2947 8.361139 CAGTAGTTATATCCCCAACAAGTCTAG 58.639 40.741 0.00 0.00 0.00 2.43
2919 2948 7.289317 CCAGTAGTTATATCCCCAACAAGTCTA 59.711 40.741 0.00 0.00 0.00 2.59
2920 2949 6.099845 CCAGTAGTTATATCCCCAACAAGTCT 59.900 42.308 0.00 0.00 0.00 3.24
2921 2950 6.099269 TCCAGTAGTTATATCCCCAACAAGTC 59.901 42.308 0.00 0.00 0.00 3.01
2922 2951 5.968167 TCCAGTAGTTATATCCCCAACAAGT 59.032 40.000 0.00 0.00 0.00 3.16
2923 2952 6.099845 ACTCCAGTAGTTATATCCCCAACAAG 59.900 42.308 0.00 0.00 33.35 3.16
2924 2953 5.968167 ACTCCAGTAGTTATATCCCCAACAA 59.032 40.000 0.00 0.00 33.35 2.83
2925 2954 5.535029 ACTCCAGTAGTTATATCCCCAACA 58.465 41.667 0.00 0.00 33.35 3.33
2926 2955 5.601313 TGACTCCAGTAGTTATATCCCCAAC 59.399 44.000 0.00 0.00 39.07 3.77
2927 2956 5.601313 GTGACTCCAGTAGTTATATCCCCAA 59.399 44.000 0.00 0.00 39.07 4.12
2928 2957 5.145564 GTGACTCCAGTAGTTATATCCCCA 58.854 45.833 0.00 0.00 39.07 4.96
2929 2958 4.527427 GGTGACTCCAGTAGTTATATCCCC 59.473 50.000 0.00 0.00 39.07 4.81
2930 2959 4.527427 GGGTGACTCCAGTAGTTATATCCC 59.473 50.000 0.00 0.00 39.07 3.85
2931 2960 4.217983 CGGGTGACTCCAGTAGTTATATCC 59.782 50.000 0.00 0.00 39.07 2.59
2932 2961 4.826183 ACGGGTGACTCCAGTAGTTATATC 59.174 45.833 0.00 0.00 42.50 1.63
2933 2962 4.801164 ACGGGTGACTCCAGTAGTTATAT 58.199 43.478 0.00 0.00 42.50 0.86
2934 2963 4.202441 GACGGGTGACTCCAGTAGTTATA 58.798 47.826 0.00 0.00 44.21 0.98
2935 2964 3.022406 GACGGGTGACTCCAGTAGTTAT 58.978 50.000 0.00 0.00 44.21 1.89
2936 2965 2.440409 GACGGGTGACTCCAGTAGTTA 58.560 52.381 0.00 0.00 44.21 2.24
2937 2966 1.254954 GACGGGTGACTCCAGTAGTT 58.745 55.000 0.00 0.00 44.21 2.24
2938 2967 0.611340 GGACGGGTGACTCCAGTAGT 60.611 60.000 0.00 0.00 44.21 2.73
2939 2968 0.611062 TGGACGGGTGACTCCAGTAG 60.611 60.000 0.00 0.00 44.21 2.57
2940 2969 0.611062 CTGGACGGGTGACTCCAGTA 60.611 60.000 10.32 0.00 46.03 2.74
2941 2970 1.908793 CTGGACGGGTGACTCCAGT 60.909 63.158 10.32 0.00 46.03 4.00
2942 2971 2.973899 CTGGACGGGTGACTCCAG 59.026 66.667 5.15 5.15 45.97 3.86
2943 2972 2.603473 CCTGGACGGGTGACTCCA 60.603 66.667 0.00 0.00 38.11 3.86
2944 2973 2.283676 TCCTGGACGGGTGACTCC 60.284 66.667 0.00 0.00 0.00 3.85
2945 2974 2.352032 CCTCCTGGACGGGTGACTC 61.352 68.421 0.00 0.00 34.57 3.36
2946 2975 2.283966 CCTCCTGGACGGGTGACT 60.284 66.667 0.00 0.00 34.57 3.41
2947 2976 3.391382 CCCTCCTGGACGGGTGAC 61.391 72.222 18.08 0.00 35.65 3.67
2948 2977 4.715130 CCCCTCCTGGACGGGTGA 62.715 72.222 19.45 0.00 38.88 4.02
2957 2986 2.772622 ATAACCCGGCCCCTCCTG 60.773 66.667 0.00 0.00 0.00 3.86
2958 2987 2.772622 CATAACCCGGCCCCTCCT 60.773 66.667 0.00 0.00 0.00 3.69
2959 2988 4.581093 GCATAACCCGGCCCCTCC 62.581 72.222 0.00 0.00 0.00 4.30
2960 2989 1.489560 ATAGCATAACCCGGCCCCTC 61.490 60.000 0.00 0.00 0.00 4.30
2961 2990 1.463410 ATAGCATAACCCGGCCCCT 60.463 57.895 0.00 0.00 0.00 4.79
2962 2991 1.303317 CATAGCATAACCCGGCCCC 60.303 63.158 0.00 0.00 0.00 5.80
2963 2992 0.605589 GTCATAGCATAACCCGGCCC 60.606 60.000 0.00 0.00 0.00 5.80
2964 2993 0.949105 CGTCATAGCATAACCCGGCC 60.949 60.000 0.00 0.00 0.00 6.13
2965 2994 0.032952 TCGTCATAGCATAACCCGGC 59.967 55.000 0.00 0.00 0.00 6.13
2966 2995 2.029380 TGATCGTCATAGCATAACCCGG 60.029 50.000 0.00 0.00 0.00 5.73
2967 2996 3.297830 TGATCGTCATAGCATAACCCG 57.702 47.619 0.00 0.00 0.00 5.28
2968 2997 4.627467 GTGATGATCGTCATAGCATAACCC 59.373 45.833 20.24 0.43 37.20 4.11
2969 2998 5.230182 TGTGATGATCGTCATAGCATAACC 58.770 41.667 20.24 5.33 37.20 2.85
2970 2999 6.587608 TCATGTGATGATCGTCATAGCATAAC 59.412 38.462 20.24 6.00 37.20 1.89
2971 3000 6.690530 TCATGTGATGATCGTCATAGCATAA 58.309 36.000 20.24 3.61 37.20 1.90
2972 3001 6.271488 TCATGTGATGATCGTCATAGCATA 57.729 37.500 20.24 6.52 37.20 3.14
2973 3002 5.143376 TCATGTGATGATCGTCATAGCAT 57.857 39.130 20.24 15.42 37.20 3.79
2974 3003 4.589216 TCATGTGATGATCGTCATAGCA 57.411 40.909 20.24 13.90 37.20 3.49
2975 3004 4.143158 GCTTCATGTGATGATCGTCATAGC 60.143 45.833 20.24 17.69 37.20 2.97
2976 3005 4.388165 GGCTTCATGTGATGATCGTCATAG 59.612 45.833 20.24 12.93 37.20 2.23
2977 3006 4.309933 GGCTTCATGTGATGATCGTCATA 58.690 43.478 20.24 17.89 37.20 2.15
2978 3007 3.136763 GGCTTCATGTGATGATCGTCAT 58.863 45.455 20.24 3.03 40.34 3.06
2979 3008 2.554142 GGCTTCATGTGATGATCGTCA 58.446 47.619 13.75 13.75 39.39 4.35
2980 3009 1.869767 GGGCTTCATGTGATGATCGTC 59.130 52.381 8.06 8.06 39.39 4.20
2981 3010 1.210234 TGGGCTTCATGTGATGATCGT 59.790 47.619 0.00 0.00 39.39 3.73
2982 3011 1.957668 TGGGCTTCATGTGATGATCG 58.042 50.000 0.00 0.00 39.39 3.69
2983 3012 4.142790 AGATTGGGCTTCATGTGATGATC 58.857 43.478 0.00 0.00 39.39 2.92
2984 3013 4.142790 GAGATTGGGCTTCATGTGATGAT 58.857 43.478 0.00 0.00 39.39 2.45
2985 3014 3.054213 TGAGATTGGGCTTCATGTGATGA 60.054 43.478 0.00 0.00 37.55 2.92
2986 3015 3.284617 TGAGATTGGGCTTCATGTGATG 58.715 45.455 0.00 0.00 0.00 3.07
2987 3016 3.657398 TGAGATTGGGCTTCATGTGAT 57.343 42.857 0.00 0.00 0.00 3.06
2988 3017 3.245016 ACTTGAGATTGGGCTTCATGTGA 60.245 43.478 0.00 0.00 0.00 3.58
2989 3018 3.087031 ACTTGAGATTGGGCTTCATGTG 58.913 45.455 0.00 0.00 0.00 3.21
2990 3019 3.446442 ACTTGAGATTGGGCTTCATGT 57.554 42.857 0.00 0.00 0.00 3.21
2991 3020 4.219070 TCAAACTTGAGATTGGGCTTCATG 59.781 41.667 1.87 0.00 32.50 3.07
2992 3021 4.410099 TCAAACTTGAGATTGGGCTTCAT 58.590 39.130 1.87 0.00 32.50 2.57
2993 3022 3.831323 TCAAACTTGAGATTGGGCTTCA 58.169 40.909 1.87 0.00 32.50 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.