>input_sequence_62911
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----------------------------------------------------ATGGCGGTCCCATCGTCGTCCTTGTTGT
CGTCGCTGCTGCTCCTCGCGCTCTTCCTGCATCATCATTGCTCCGCTGCCCACGATCGCGGCAGCGCCGCCGTCGTCGTC
AACATCTCCGCCGTGGAGGACGTCGTCCGCGACCGCGCGTTCGAGCTGCTCCACCGCACCGACAAGCTCGTGGGCGTGCC
CCTCACGGCCTGCCCGTCGGCGTGCGGCCTCGTCGAGGTCCAGGCCTCGGCGCTGCGCGTGCGGAGCAGCTCCCTCTGGG
CCGACGGCGTCAACGCCACCGACGCCGCCGCCGGCACCGCGGGGTTCACCGTGCCGCCTCGCGTCGTGCCGTCCCCGTTC
GCCCGCCGCGTCGACGTCGTCTTCGAGCGGTTCGT---CGGCAGCAACTCGTCCGGCGCGCTCTTCGCCGTGCCGCCCGG
GTACGCGCTGGCCGCCCCCGTGGCCGCGCTGCTCGCGTACGACGTGTCGACCGGGAACAACGGCAGCAGGGCCGTCGGGC
TCCGGGCGCTCGGTGCGCCCGTCCGCGTGGAGTTCGGTGACCTCTCGTCGGCGGCGGCGAACGGGACACAGCCGTTCAAC
GCCACGGCGGCGAGGTGCGTGACCTTCGCGGTGGCCAGCGGGCAGGCCAAGGCCGTGGCCACGCACGCCATGGCGTCGGA
CACCGCGTGCACGGTGACCGGCACGGGCCACTACGGCGTGGCGGTGCGGCTGCAACCGCCACCGCCTTCGCCGACGCCGC
CGACGCCGCAGCCGCCTGCGGCGGTGCGGGAGCGCTGGTGGGCATGGATGGCGGTGGCCGGCGTCGGCGGGGTGGTGGCG
GTGGGTTTCCTGGCGGCCACCGTGGTCGCGGCGGTGCGGTGGAGCAGGAGGCGCAGGAGGGAGGAGATGGACCTGCGGGC
GTTGGCCGGGGAGGAGCTGGGGCGGATGGCGGTGCGGGGGAGCAGGATGCCGGCGGCGAAGATGGTGAGGACGCGGCCGG
AGCTGGAGGACGGGAGCCCCATGGCGTGGCGGCGCTAG------------------------------------------
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>chr7D_1_TraesCS7D01G113400
TTTTTCCCACTTGTTCATTGTGGACCATGGCATTTTCGTGTGAACCTTTGGAGGACATCATTGTTCAGAACAAATGTTTT
GGACTGACTTATTTAAAGTTGTTAAAGTTGTTTTTTTTTCCTGCAAAAAAAAGTTGTTTTTCTTTGGCAAGTTCAATAAT
TCTTTCGAACGCATTTTCGCGTCCTCACTTTCGCTGCGAACCCAACATGCATTCTCATTTTATTTCGGATGATCCCTCAA
AAGAAAAAAATTGGATGGGACTAGAATGTTGCATATGTGCACTAATCATATGGAGCAAACCTCCACACCCCTATCTCATC
TTCTTCATCATTAGAGACTGGCGCGTACCTTCTTCTTCCTCATCCTTCTCGCCATATCATTCTTTCCCTCCTC---GATT
TTTTGGTCTCGCCAGCGTCAAGTCAAGGCATTACCGGAATG-CACTAGGTTGTCATTGCCTCGGTAACGGTTTCG-TTAG
CTCCCCTCCCTCTCCTCATTCCTCGTCCTCCTTCCTTCACTCCTTCACTTCTTCCACTAGTTCCCGCAAGCGTTCACCAC
CAAGACTAGAGACTGAACGTTCACCTGATAAAATTTTCCTTTCATCTTATCTTCATTAGTTAATTTTCTCTCAATAGTTT
TACATGGCCCGTGTACATTCTTCTTAAACTTGAAAAAAAAATTCTAAATTTTGAAATCCTGTAAAAATTGTTCATGATAC
ATAGAAATGAGTGTATGAGCA--TCTGCGTCTGTACTGGGTTGAAAAAAAAGAGGGATAATATAATGCTGCATTTCATCT
GAGTGCTGGTACTAATTAACAGCCAGCATCCCCCCTAAATATAGGAGATCATTTGCCTCCATTGGTGATTAACCTCTCGT
AGCTCTGGCC---ACCTCCTCCGCTCGCTCCGTCCATCCGGCCCGCCG--TTCGAGCCGTCCGTCGAGATGGCGGCATCC
TACCGCCGCCGCCACACGCCACGGCGCTAGCCCTCCAGAAAGAGAGGCAGCAATGGCGGTCCCATCGTCGTCCTTGTTGT
CGTCGCTGCTGCTCCTCGCGCTCTTCCTGCATCATCATTGCTCCGCTGCCCACGATCGCGGCAGCGCCGCCGTCGTCGTC
AACATCTCCGCCGTGGAGGACGTCGTCCGCGACCGCGCGTTCGAGCTGCTCCACCGCACCGACAAGCTCGTGGGCGTGCC
CCTCACGGCCTGCCCGTCGGCGTGCGGCCTCGTCGAGGTCCAGGCCTCGGCGCTGCGCGTGCGGAGCAGCTCCCTCTGGG
CCGACGGCGTCAACGCCACCGACGCCGCCGCCGGCACCGCGGGGTTCACCGTGCCGCCTCGCGTCGTGCCGTCCCCGTTC
GCCCGCCGCGTCGACGTCGTCTTCGAGCGGTTCGT---CGGCAGCAACTCGTCCGGCGCGCTCTTCGCCGTGCCGCCCGG
GTACGCGCTGGCCGCCCCCGTGGCCGCGCTGCTCGCGTACGACGTGTCGACCGGGAACAACGGCAGCAGGGCCGTCGGGC
TCCGGGCGCTCGGTGCGCCCGTCCGCGTGGAGTTCGGTGACCTCTCGTCGGCGGCGGCGAACGGGACACAGCCGTTCAAC
GCCACGGCGGCGAGGTGCGTGACCTTCGCGGTGGCCAGCGGGCAGGCCAAGGCCGTGGCCACGCACGCCATGGCGTCGGA
CACCGCGTGCACGGTGACCGGCACGGGCCACTACGGCGTGGCGGTGCGGCTGCAACCGCCACCGCCTTCGCCGACGCCGC
CGACGCCGCAGCCGCCTGCGGCGGTGCGGGAGCGCTGGTGGGCATGGATGGCGGTGGCCGGCGTCGGCGGGGTGGTGGCG
GTGGGTTTCCTGGCGGCCACCGTGGTCGCGGCGGTGCGGTGGAGCAGGAGGCGCAGGAGGGAGGAGATGGACCTGCGGGC
GTTGGCCGGGGAGGAGCTGGGGCGGATGGCGGTGCGGGGGAGCAGGATGCCGGCGGCGAAGATGGTGAGGACGCGGCCGG
AGCTGGAGGACGGGAGCCCCATGGCGTGGCGGCGCTAGCTCCCCCGCCGGTCGCACTGTCGCCGTCTGGTTTAACTAGGT
GTACCTTTTTTTTTTCTCAGCATCAGATATTCAGACTTGTATTGTTGTTGTACATTATTACACACAGTACTTTGTAGTAC
TCTATATATGATATA------TTGTGTAAACTCAGATTAAAAATGTACATCGAAATAGGTTATCTT---TCTTGAGAGCA
ACATCTCACTGCATTTCTT-TGAGAACAGTAGTAGCAGATTGCAATGGACTGTCTACTTCCTTTTTACATAATAGGGCGT
TTCAGTGCCCAGACTCATCTGCATCCGATTAGACAAAAATTCGTAAAAAATTCAAAATAAATTCAAAAAAATCAATTTTT
TGGTGCGGTAGACAATTTGATGTGTGAGGCCCGCTACAAATTTCAATTTATTTGGACATCTGAGCAGCTCTCAGCAAAAA
GACAAATCGGGCCAAAACAGCACGTGAATAGTAAACATTTTTACAGACCCCAAATTTATTTATTTTTGCTGAGAGCTCCT
TAGATGTCCAAATGATTTGAAAATTAGAGCGGACCTCACGCATCAAATTTTATACCGCACAATTTTTTTTGGAATTTTTT
CAATTTTTCTAGTTTTTGTTTTGATTTTTTTCGTCGGCGTGGGTGCATATGAGCTCGGGTGTAGAGATGGATTTTCGCTT
TTTACATATAATTTGCTCTTCTCAACTTCTGATGCTCCCTCCACCTCCAGTACAGAACAAAA---AAAATTGTGACTGAG
ATATAATGCCGATATGCACATTATTTGGTGTCACTAAATTCACAAAAATACATACAAATTATATACATCATCATTTCTTC
TCCTAACAAGTTCGAGCGATATATCCAATGGTGACAGCAGGGTTACAGATTTGATGTTCTTCCCAACTAGACTTGTTGGG
GATATAACTACTGGAGTCACCCGTCCAGGAGGGGCCGGGTTATGCTATGACGATCATCACATGAAGCCCAATCTCAAGTT
TGAGGATGGCG
>chr7A_9
--------ACTTGTTCATTGTGGATCATGGCATTTTCGCATGAACGTTTGGAGGACTTCATTGTTCAGAACAAATGTTTT
GGACTGACTTATTTAAAGTTGTT-------TTTCTTTTTCCTG---AAAAAAGTTGTTTTTCTTTGGCAAGTTCAATAAT
TCTTTCGAACGCATTTTCGCGTCCCCACTTTCGCTGGGAACCCAACATGCATTCTCAATTTATTTCGGATGATCCCTCAA
AAATAAAATTTCAGATGGGACTAGAATGTTGCATATGTGCACTAATCATATGGCGCAAACCTCCAAACCCCTATTTCATT
TTCTTCATCGTGAGAGATTGGCGCATACCTTCTTCTTCCTCATCCTCCTCGCCATGTCATTCTTTCCCTCCTCCTCGATT
TTTCGGTCTCACCAGCGTCAAGTCAAGGCATTGCCACATTGTCACTAGGTTGTCGTTGCCTCGTTAACGGTTTCGGTTAG
CTCCCCTCCCTCTCCTCCTTCCTCGTTCTCCTTCCTTCACTCATGCTCTTC-TCCACTAGTTCGCGGAAGCGTTAGCCAC
CAAGACTAGAGACTGAACGTTCGTATGATAAAATATTCCTCTAATCTCATCTTTAGGAGTTAATTTTCTCTCTATAGTTT
TACATGGCCCGTGTACATTCTTCTTAAACTCGATCTTT---TTCTAAATTTTAAAATCCTGTAAAACTTGTTCATGGCAC
ATAGAAATAAGTGTATGCGTGTCTGTGCGTCTGTATTGTGTTAAAAAAA-----GGATAATATAATGCTGCATTTCATCT
GAGTGCTGGTACTAATTAACAGCCAGCATCCCCCCTAAATATAGGAGATCATTTGCCTCCATTGGTGATTAACCTCTCGT
AGCTCTGGCC---ACCTCCTCCGCTCGCTCCGTCCATCCGGCCCGCCG--TTCGAGCCCTCCGTCGAGATGGCGGCATCC
TACCGCCGCCGCCACACGCCACGGCGCTAGCCCTCCAGAAAGAGAGGCAGCAATGGCGGTCCCATCGTCGTCCTTGTTGT
CG---CTGCTGCTCCTCGCGCTCTTCCTGCATCATCATTGCTCCGCTGCCCAGGATCGCGGCAGCGCCGCCGTCGTCGTC
AACATCTCCGCCGTGGAGGACGTCGTCCGCGACCGCGCGTTCGAGCTGCTCCACCGCACCGACAAGCTCGTGGGCGTGCC
CCTCACGGCCTGCCCGTCGCCGTGCGGCCTCGTCGACGTCCAGGCCTCGGCGCTGCGCGTGCGGAGCAGCTCCCTCTGGG
ACGACGGCGTCAACGCCACCGACGCCGCCGCCGGCACCGCGGGGTTCACCGTGCCGCCCCGCGTCGTGCCGTCCCCGTTC
GCCCGCCGCGTCGACGTCGTCTTTGAGCGGTTCCT---CGGCAACTCCTCCTCCGGCGCGCTCTTCGCTGCGCCGCCCGG
GTACGCGCTGGCCGCCCCCGTGGCCGCGCTGCTCGCGTACGACGTGTCGACCGGGAACAACGGCAGCAGGGCCGTCGGGC
TCCGGGCGCTCGGCGCGCCCGTCCGCGTGGAGTTCGGGGACCTCGCGCATGCGGCGGCGAACGGGACGACGCCGTTCAAC
GCCACGGCGGCGAGGTGCGTGACCTTCGCGGTGGAGAGCGGGAAGGCCAAGGCCGTGGCCACGCACGCCATGGCGTCGGA
CACCGCGTGCACGGTGACCGGCACGGGCCACTACGGCGTGGCGGTGCGGCTGCAACCGCCACCGCCTTCGCCGCCGCCGC
CGCCGCCGCAGCCGCCTGCGGCGGTGAGGGAGCGGTGGTGGGCGTGGATGGCGGTGGCCGGCGTCGGCGGGGTGGTGGTG
GTGAGCTTCCTGGCGGCCACCGTGGTCGCGGCGGTGCGGTGGAGCAGGAGGCGCAGGAGGGAGGAGATGGACCTGCGGGC
GCTCGCCGGGGAGGAGCTGGGGAGGATGGCGGTGCGGGGGAGCCGGATGCCGGCGGCGAAGATGGTGAGGACGCGGCCAG
AGCTGGAGGACGGGAGCCCGCTGGCGTGGCGGCGCTAGCTCCTCCGCCGGTCGCACTGTCGCCGTCTGGTTTAACTAGGT
GTAG---TTTTTTTTCTCAGCATCAGATATTCAGACTTGTATTGTTGTTGTACATTATTACACACAGTACTTTGTAGTAC
TCTATATATGATATA------TTGTGTAAACTCGGATTAAAAATGTACATCGAAATAGGTC-------ATCTTGGGAGCA
ACATCTCACTGCATGTTCTCTGAGGAC--TAGTAGCAGATTGCAATGGACTTTCTACTTCATTTC---------------
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--TACATATAATTTGCTCTTCTCAACTTCTGATGCTCCCTCCACTTCCAGTACAGAGCGAAACTCAAAATTGTGACCGAA
ATATAATGCCAATATGCACATTATTTGGTGTCACTAAATC--------TACATACAAATTATATACATCATCATTTCTTC
TCCTAACAAGTTCGAGC---------------------------------------------------------------
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>chr7B_737
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-----------------------TCTGCCTCTGCACTGTGTTGAAAAAA----GGGATAATATAATGCTGCATTTCATCT
GAGTGCTGGTACTAATTAACAGCCAGCATCCCCCCTAAATATAGGAGATCATTTCCCTCCATTGGTGATTAACCTCTCGT
AGCTCTGGCCGGAACCTCCTCCGCTCGCTCCATCCTTCCCGGCGCGCCGTTTCGAGCCCTCCGTCGAGATGGCGGCATCC
TATCGCCGCCGCCACATGCCACGGAGCTAGCCCTCCAGAAAGAGAGGCAGCAATGGCGGTCCCATCGTCGTCCTTGTTGT
CGTCGCTGCTGCTCCTCGCGCTCCTGCTGCA---TCATTGCTCCGCGGCCCAGGATCACGGCAGCGCCGCCGTCATCGTC
AACATCTCGTCCCTCGAGGACGTCGTCCGCGACCGCGCGTTCGAGCTGCTCCACCGCACCGACAAGCTCGTGGGCGTGCC
CCTCACGGCCTGCCCGTCGCCGTGCGGCCTCGTCGAGGTCCAGGCCTCGGCGCTGCGCGTGCGGAGCAGCTCCCTCTGGG
CCGACGGCGTCAACGCCACCGCCGCCGA------CACCGCGGGGTTCACCGTGCCGCCGCGCGTCGTGCCGTCCCCGTTC
GCCCGCCGCGTCGACGTCGTCTTCGAGCGGTTCGTCGGCGGCAACTCCTCGTCCGGCGCGCTCTTCGCCGCGCCGCCCGG
GTACGCGCTGGCTGCCCCCGTGGCCGCGCTGCTCGCGTACGACGTGTCGACCGGAAACAACGGCAGCAGGGCTGTCGGAC
TCCGGGCGCTCGGCGCGCCGGTCCGCCTGGAGTTCGGGTACCTCGCGCCTGCGGCGGCGAACGGGACGCCGCCGTTTAAC
GCCACGGCGGCAAGGTGCGTAACCTTCGCGGTGGACAGCGGGAAGGCCAAGGCCGTGGCCACGCACGCCATGGCGTCGGA
CACCGCGTGCACGGTGACCGGCACGGGCCACTACGGCGTGGCGGTGCGGCTGCAACCGACACCGCCTTCGCTGACGCCGC
CGACGCCGCAGCCGCCTGCAGCGGTGCGGGAGCGGTGGTGGGCGTGGATGGCGGTGGCCGGCGTCGGCGGGGTGGTGGTG
GTGGGCTTCCTGGCGGCCACCGTGGTCGCGGCGGTGCGGTGGAGCAGGAGGCGCAGGAGGGAGGAGATGGACCTGCGGGC
GCTGGCCGGGGAGGAGCTGGGGAGGATGGCGGTGCGGGGGAGCAGGATGCCGGCGGCGAAGATGGTGAGGACGCGGCCGG
AGCTGGAGGACGGGAGCCCCATGGCGTGGCGGCGCTAGCTCCTCCGCCGGTCGCACTGTCGCCGCCTTGATTAACTAGGT
GTACC----TTTTTTCTCAGCATCAGATATTCAGACTTGTATTGTTGTTGTACAGTATTACACACAGTACTTTGTAGTAC
TCTATATATATATATGATGTTTTGTGTACACTCGGGTTAAAAATGTACATTGAAATAGGTAGGTTATTATCTTGAGAGCA
ACATCTCACTGCATGTTCT-TGAGAAC--TAGCAGCAGATTGCAATAGACTGTCCCACTTCATTT---------------
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>SNPs
SSSSSSSS----------------S-------------SS-----S----------S-----------------------
-----------------------SSSSSSS---S---------SSS----------------------------------
------------------------S-----------S--------------------S----------------------
--SS----SS-SS----------------------------------------S-----------S--------S----S
---------S-S-----S------S---------------------S--------S------------------------
---S------S---------------------S--SS-S---------------S--------S----------------
-----------------S--------S---------------S-S-S----S-----------S--S-------SS----
----------------------SSS---------S-----S-S----S-----S-SS---------------S-------
------------------------------S--SSSSSSSS-----------S-------------S---------SS--
--------S--------S-SS-----------------S----------SSSS---------------------------
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----------------------------------------------------------S---------------------
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----------------------------------------------------S---------------------------
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-------------------S------------------------------------------------------------
----------------------------------------------------------S---------------------
-------------------------------------------S-SS-----------------------S---------
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-------------S-----------------------S------S--S-S-----------------S-S----------
----------------------------------S-------S-------------------------------------
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----------------------------------S--------S----------------------------------S-
-----S--------------------------------------------------------------------------
-S--------------------S---------------------------------------------------------
------------------------------------------S-------------------------------------
-----SS-------------------------------------------------------------------------
---------------------------------S--------------------------SSSS-S--------------
--------------S-SS---------SS------------------------------------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS------------------------------------------S-----------S-S-----------------S--S
----------S----------------------------SSSSSSSSS--------------------------------
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_523
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-----------------------CGTCCTCCTTCCTTCACTCC-------------------------------------
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>reverse_2490
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---------GGCCAAAACAGCACGTGAAT---------------------------------------------------
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