Multiple sequence alignment - TraesCS7D01G097700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G097700 chr7D 100.000 2776 0 0 1 2776 58866667 58869442 0.000000e+00 5127.0
1 TraesCS7D01G097700 chr4A 92.303 1676 95 21 593 2248 675965720 675967381 0.000000e+00 2350.0
2 TraesCS7D01G097700 chr4A 95.238 504 22 2 2273 2776 675967369 675967870 0.000000e+00 797.0
3 TraesCS7D01G097700 chr7A 91.055 1554 75 29 698 2245 63442149 63443644 0.000000e+00 2041.0
4 TraesCS7D01G097700 chr7A 96.371 496 17 1 2278 2773 63443642 63444136 0.000000e+00 815.0
5 TraesCS7D01G097700 chr7A 94.231 52 2 1 625 676 63442098 63442148 8.240000e-11 78.7
6 TraesCS7D01G097700 chr1A 92.208 154 8 2 325 475 241517373 241517525 6.020000e-52 215.0
7 TraesCS7D01G097700 chr1A 91.558 154 9 2 325 475 4010620 4010468 2.800000e-50 209.0
8 TraesCS7D01G097700 chr5D 91.613 155 9 2 325 476 503306195 503306348 7.790000e-51 211.0
9 TraesCS7D01G097700 chr5D 91.558 154 9 2 325 475 512405236 512405388 2.800000e-50 209.0
10 TraesCS7D01G097700 chr5D 90.260 154 11 2 325 475 6260580 6260428 6.060000e-47 198.0
11 TraesCS7D01G097700 chr5D 78.392 199 24 16 19 205 477837160 477837351 8.130000e-21 111.0
12 TraesCS7D01G097700 chr7B 91.558 154 9 2 325 475 137679185 137679337 2.800000e-50 209.0
13 TraesCS7D01G097700 chr3D 90.909 154 10 2 325 475 596659145 596659297 1.300000e-48 204.0
14 TraesCS7D01G097700 chr6B 90.260 154 11 2 325 475 18745736 18745584 6.060000e-47 198.0
15 TraesCS7D01G097700 chr1D 90.260 154 11 2 325 475 51839436 51839284 6.060000e-47 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G097700 chr7D 58866667 58869442 2775 False 5127.000000 5127 100.000000 1 2776 1 chr7D.!!$F1 2775
1 TraesCS7D01G097700 chr4A 675965720 675967870 2150 False 1573.500000 2350 93.770500 593 2776 2 chr4A.!!$F1 2183
2 TraesCS7D01G097700 chr7A 63442098 63444136 2038 False 978.233333 2041 93.885667 625 2773 3 chr7A.!!$F1 2148

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.026156 CGCGAATGTGCTTATTGCGA 59.974 50.0 0.0 0.0 46.63 5.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 1828 0.327259 GTCCCTCCTAGCCGGTTTTT 59.673 55.0 1.9 0.0 0.0 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 8.739649 TGAAAAAGAAACAAAATGCAAAAAGG 57.260 26.923 0.00 0.00 0.00 3.11
67 68 8.571336 TGAAAAAGAAACAAAATGCAAAAAGGA 58.429 25.926 0.00 0.00 0.00 3.36
68 69 9.404348 GAAAAAGAAACAAAATGCAAAAAGGAA 57.596 25.926 0.00 0.00 0.00 3.36
69 70 9.926158 AAAAAGAAACAAAATGCAAAAAGGAAT 57.074 22.222 0.00 0.00 0.00 3.01
144 145 3.436700 AAAAACGGAGAAAACTGGCTG 57.563 42.857 0.00 0.00 0.00 4.85
145 146 1.318576 AAACGGAGAAAACTGGCTGG 58.681 50.000 0.00 0.00 0.00 4.85
146 147 0.472471 AACGGAGAAAACTGGCTGGA 59.528 50.000 0.00 0.00 0.00 3.86
147 148 0.472471 ACGGAGAAAACTGGCTGGAA 59.528 50.000 0.00 0.00 0.00 3.53
148 149 1.073923 ACGGAGAAAACTGGCTGGAAT 59.926 47.619 0.00 0.00 0.00 3.01
149 150 1.740025 CGGAGAAAACTGGCTGGAATC 59.260 52.381 0.00 0.00 0.00 2.52
150 151 1.740025 GGAGAAAACTGGCTGGAATCG 59.260 52.381 0.00 0.00 0.00 3.34
151 152 2.427506 GAGAAAACTGGCTGGAATCGT 58.572 47.619 0.00 0.00 0.00 3.73
152 153 2.416893 GAGAAAACTGGCTGGAATCGTC 59.583 50.000 0.00 0.00 0.00 4.20
153 154 2.039084 AGAAAACTGGCTGGAATCGTCT 59.961 45.455 0.00 0.00 0.00 4.18
154 155 2.100605 AAACTGGCTGGAATCGTCTC 57.899 50.000 0.00 0.00 0.00 3.36
155 156 0.976641 AACTGGCTGGAATCGTCTCA 59.023 50.000 0.00 0.00 0.00 3.27
156 157 0.976641 ACTGGCTGGAATCGTCTCAA 59.023 50.000 0.00 0.00 0.00 3.02
157 158 1.066573 ACTGGCTGGAATCGTCTCAAG 60.067 52.381 0.00 0.00 0.00 3.02
158 159 0.976641 TGGCTGGAATCGTCTCAAGT 59.023 50.000 0.00 0.00 0.00 3.16
159 160 2.166459 CTGGCTGGAATCGTCTCAAGTA 59.834 50.000 0.00 0.00 0.00 2.24
160 161 2.166459 TGGCTGGAATCGTCTCAAGTAG 59.834 50.000 0.00 0.00 0.00 2.57
161 162 2.482142 GGCTGGAATCGTCTCAAGTAGG 60.482 54.545 0.00 0.00 0.00 3.18
162 163 2.427453 GCTGGAATCGTCTCAAGTAGGA 59.573 50.000 0.00 0.00 0.00 2.94
163 164 3.735514 GCTGGAATCGTCTCAAGTAGGAC 60.736 52.174 0.00 0.00 0.00 3.85
166 167 4.361827 CGTCTCAAGTAGGACGCG 57.638 61.111 3.53 3.53 46.23 6.01
167 168 1.868251 CGTCTCAAGTAGGACGCGC 60.868 63.158 5.73 0.00 46.23 6.86
168 169 1.516603 GTCTCAAGTAGGACGCGCC 60.517 63.158 5.73 9.03 0.00 6.53
169 170 2.202756 CTCAAGTAGGACGCGCCC 60.203 66.667 5.73 3.78 37.37 6.13
170 171 3.718210 CTCAAGTAGGACGCGCCCC 62.718 68.421 8.22 9.17 37.37 5.80
171 172 3.771160 CAAGTAGGACGCGCCCCT 61.771 66.667 21.83 21.83 37.37 4.79
172 173 2.043652 AAGTAGGACGCGCCCCTA 60.044 61.111 19.98 19.98 37.37 3.53
175 176 2.918248 TAGGACGCGCCCCTACTA 59.082 61.111 19.98 3.24 37.37 1.82
176 177 1.228063 TAGGACGCGCCCCTACTAG 60.228 63.158 19.98 0.00 37.37 2.57
177 178 1.987807 TAGGACGCGCCCCTACTAGT 61.988 60.000 19.98 0.00 37.37 2.57
178 179 2.421399 GGACGCGCCCCTACTAGTT 61.421 63.158 5.73 0.00 0.00 2.24
179 180 1.103398 GGACGCGCCCCTACTAGTTA 61.103 60.000 5.73 0.00 0.00 2.24
180 181 0.029967 GACGCGCCCCTACTAGTTAC 59.970 60.000 5.73 0.00 0.00 2.50
181 182 1.361632 CGCGCCCCTACTAGTTACC 59.638 63.158 0.00 0.00 0.00 2.85
182 183 1.386525 CGCGCCCCTACTAGTTACCA 61.387 60.000 0.00 0.00 0.00 3.25
183 184 0.103755 GCGCCCCTACTAGTTACCAC 59.896 60.000 0.00 0.00 0.00 4.16
184 185 0.749049 CGCCCCTACTAGTTACCACC 59.251 60.000 0.00 0.00 0.00 4.61
185 186 1.870064 GCCCCTACTAGTTACCACCA 58.130 55.000 0.00 0.00 0.00 4.17
186 187 2.190538 GCCCCTACTAGTTACCACCAA 58.809 52.381 0.00 0.00 0.00 3.67
187 188 2.093288 GCCCCTACTAGTTACCACCAAC 60.093 54.545 0.00 0.00 0.00 3.77
188 189 2.167075 CCCCTACTAGTTACCACCAACG 59.833 54.545 0.00 0.00 33.50 4.10
189 190 2.167075 CCCTACTAGTTACCACCAACGG 59.833 54.545 0.00 0.00 33.50 4.44
190 191 2.167075 CCTACTAGTTACCACCAACGGG 59.833 54.545 0.00 0.00 41.29 5.28
191 192 2.014010 ACTAGTTACCACCAACGGGA 57.986 50.000 0.00 0.00 38.05 5.14
192 193 1.620323 ACTAGTTACCACCAACGGGAC 59.380 52.381 0.00 0.00 38.05 4.46
193 194 1.897802 CTAGTTACCACCAACGGGACT 59.102 52.381 0.00 0.00 38.05 3.85
194 195 1.134228 AGTTACCACCAACGGGACTT 58.866 50.000 0.00 0.00 38.05 3.01
195 196 1.202722 AGTTACCACCAACGGGACTTG 60.203 52.381 0.00 0.00 38.05 3.16
196 197 0.108963 TTACCACCAACGGGACTTGG 59.891 55.000 1.20 1.20 45.62 3.61
197 198 1.770749 TACCACCAACGGGACTTGGG 61.771 60.000 7.37 0.00 44.58 4.12
198 199 2.983592 CACCAACGGGACTTGGGC 60.984 66.667 7.37 0.00 44.58 5.36
199 200 4.636435 ACCAACGGGACTTGGGCG 62.636 66.667 7.37 0.00 44.58 6.13
201 202 4.323477 CAACGGGACTTGGGCGGA 62.323 66.667 0.00 0.00 0.00 5.54
202 203 4.016706 AACGGGACTTGGGCGGAG 62.017 66.667 0.00 0.00 0.00 4.63
204 205 4.760047 CGGGACTTGGGCGGAGTG 62.760 72.222 0.00 0.00 0.00 3.51
206 207 4.021925 GGACTTGGGCGGAGTGCT 62.022 66.667 3.71 0.00 45.43 4.40
214 215 2.841442 GGGCGGAGTGCTCTATTTAT 57.159 50.000 0.00 0.00 42.52 1.40
215 216 3.127425 GGGCGGAGTGCTCTATTTATT 57.873 47.619 0.00 0.00 42.52 1.40
216 217 4.267349 GGGCGGAGTGCTCTATTTATTA 57.733 45.455 0.00 0.00 42.52 0.98
217 218 3.995048 GGGCGGAGTGCTCTATTTATTAC 59.005 47.826 0.00 0.00 42.52 1.89
218 219 4.262506 GGGCGGAGTGCTCTATTTATTACT 60.263 45.833 0.00 0.00 42.52 2.24
219 220 5.298347 GGCGGAGTGCTCTATTTATTACTT 58.702 41.667 0.00 0.00 45.43 2.24
220 221 5.758784 GGCGGAGTGCTCTATTTATTACTTT 59.241 40.000 0.00 0.00 45.43 2.66
221 222 6.927381 GGCGGAGTGCTCTATTTATTACTTTA 59.073 38.462 0.00 0.00 45.43 1.85
222 223 7.440255 GGCGGAGTGCTCTATTTATTACTTTAA 59.560 37.037 0.00 0.00 45.43 1.52
223 224 8.274248 GCGGAGTGCTCTATTTATTACTTTAAC 58.726 37.037 0.00 0.00 41.73 2.01
224 225 9.530633 CGGAGTGCTCTATTTATTACTTTAACT 57.469 33.333 0.00 0.00 0.00 2.24
229 230 8.889717 TGCTCTATTTATTACTTTAACTGTGGC 58.110 33.333 0.00 0.00 0.00 5.01
230 231 8.062448 GCTCTATTTATTACTTTAACTGTGGCG 58.938 37.037 0.00 0.00 0.00 5.69
231 232 7.912383 TCTATTTATTACTTTAACTGTGGCGC 58.088 34.615 0.00 0.00 0.00 6.53
232 233 4.587211 TTATTACTTTAACTGTGGCGCG 57.413 40.909 0.00 0.00 0.00 6.86
233 234 0.513820 TTACTTTAACTGTGGCGCGC 59.486 50.000 25.94 25.94 0.00 6.86
234 235 1.619526 TACTTTAACTGTGGCGCGCG 61.620 55.000 28.44 28.44 0.00 6.86
235 236 2.662196 TTTAACTGTGGCGCGCGA 60.662 55.556 37.18 20.50 0.00 5.87
236 237 2.165362 CTTTAACTGTGGCGCGCGAA 62.165 55.000 37.18 18.82 0.00 4.70
237 238 1.570347 TTTAACTGTGGCGCGCGAAT 61.570 50.000 37.18 12.53 0.00 3.34
238 239 2.234271 TTAACTGTGGCGCGCGAATG 62.234 55.000 37.18 18.93 0.00 2.67
240 241 4.799473 CTGTGGCGCGCGAATGTG 62.799 66.667 37.18 15.99 0.00 3.21
249 250 2.473173 CGCGAATGTGCTTATTGCG 58.527 52.632 0.00 11.94 46.63 4.85
250 251 0.026156 CGCGAATGTGCTTATTGCGA 59.974 50.000 0.00 0.00 46.63 5.10
251 252 1.734885 GCGAATGTGCTTATTGCGAG 58.265 50.000 0.00 0.00 46.63 5.03
252 253 1.062587 GCGAATGTGCTTATTGCGAGT 59.937 47.619 0.00 0.00 46.63 4.18
253 254 2.697363 CGAATGTGCTTATTGCGAGTG 58.303 47.619 0.00 0.00 46.63 3.51
254 255 2.537529 CGAATGTGCTTATTGCGAGTGG 60.538 50.000 0.00 0.00 46.63 4.00
255 256 0.734889 ATGTGCTTATTGCGAGTGGC 59.265 50.000 0.00 0.00 46.63 5.01
256 257 0.321564 TGTGCTTATTGCGAGTGGCT 60.322 50.000 0.00 0.00 46.63 4.75
257 258 0.097674 GTGCTTATTGCGAGTGGCTG 59.902 55.000 0.00 0.00 46.63 4.85
258 259 1.063166 GCTTATTGCGAGTGGCTGC 59.937 57.895 0.00 0.00 44.05 5.25
259 260 1.647545 GCTTATTGCGAGTGGCTGCA 61.648 55.000 0.50 0.00 44.05 4.41
262 263 2.203195 TTGCGAGTGGCTGCAACT 60.203 55.556 9.99 9.99 45.45 3.16
263 264 2.545596 TTGCGAGTGGCTGCAACTG 61.546 57.895 15.75 8.21 45.45 3.16
264 265 4.395583 GCGAGTGGCTGCAACTGC 62.396 66.667 15.75 14.21 39.11 4.40
265 266 2.667536 CGAGTGGCTGCAACTGCT 60.668 61.111 15.75 0.00 42.66 4.24
266 267 2.256591 CGAGTGGCTGCAACTGCTT 61.257 57.895 15.75 0.00 42.66 3.91
267 268 1.285023 GAGTGGCTGCAACTGCTTG 59.715 57.895 15.75 0.00 42.66 4.01
275 276 4.290326 CAACTGCTTGCACGTGTG 57.710 55.556 18.38 9.04 0.00 3.82
276 277 1.298563 CAACTGCTTGCACGTGTGG 60.299 57.895 18.38 8.65 0.00 4.17
277 278 1.748879 AACTGCTTGCACGTGTGGT 60.749 52.632 18.38 4.61 0.00 4.16
278 279 1.312371 AACTGCTTGCACGTGTGGTT 61.312 50.000 18.38 10.07 0.00 3.67
279 280 1.312371 ACTGCTTGCACGTGTGGTTT 61.312 50.000 18.38 0.00 0.00 3.27
280 281 0.179140 CTGCTTGCACGTGTGGTTTT 60.179 50.000 18.38 0.00 0.00 2.43
281 282 0.457509 TGCTTGCACGTGTGGTTTTG 60.458 50.000 18.38 2.32 0.00 2.44
282 283 1.145162 GCTTGCACGTGTGGTTTTGG 61.145 55.000 18.38 0.81 0.00 3.28
283 284 0.527385 CTTGCACGTGTGGTTTTGGG 60.527 55.000 18.38 0.00 0.00 4.12
284 285 1.251527 TTGCACGTGTGGTTTTGGGT 61.252 50.000 18.38 0.00 0.00 4.51
285 286 1.251527 TGCACGTGTGGTTTTGGGTT 61.252 50.000 18.38 0.00 0.00 4.11
286 287 0.804156 GCACGTGTGGTTTTGGGTTG 60.804 55.000 18.38 0.00 0.00 3.77
287 288 0.528470 CACGTGTGGTTTTGGGTTGT 59.472 50.000 7.58 0.00 0.00 3.32
288 289 1.743958 CACGTGTGGTTTTGGGTTGTA 59.256 47.619 7.58 0.00 0.00 2.41
289 290 2.359531 CACGTGTGGTTTTGGGTTGTAT 59.640 45.455 7.58 0.00 0.00 2.29
290 291 2.619646 ACGTGTGGTTTTGGGTTGTATC 59.380 45.455 0.00 0.00 0.00 2.24
291 292 2.619177 CGTGTGGTTTTGGGTTGTATCA 59.381 45.455 0.00 0.00 0.00 2.15
292 293 3.549221 CGTGTGGTTTTGGGTTGTATCAC 60.549 47.826 0.00 0.00 0.00 3.06
293 294 2.959707 TGTGGTTTTGGGTTGTATCACC 59.040 45.455 0.00 0.00 35.88 4.02
294 295 3.227614 GTGGTTTTGGGTTGTATCACCT 58.772 45.455 0.00 0.00 36.97 4.00
295 296 3.005367 GTGGTTTTGGGTTGTATCACCTG 59.995 47.826 0.00 0.00 36.97 4.00
296 297 3.227614 GGTTTTGGGTTGTATCACCTGT 58.772 45.455 0.00 0.00 36.97 4.00
297 298 3.639561 GGTTTTGGGTTGTATCACCTGTT 59.360 43.478 0.00 0.00 36.97 3.16
298 299 4.261867 GGTTTTGGGTTGTATCACCTGTTC 60.262 45.833 0.00 0.00 36.97 3.18
299 300 4.447138 TTTGGGTTGTATCACCTGTTCT 57.553 40.909 0.00 0.00 36.97 3.01
300 301 4.447138 TTGGGTTGTATCACCTGTTCTT 57.553 40.909 0.00 0.00 36.97 2.52
301 302 4.447138 TGGGTTGTATCACCTGTTCTTT 57.553 40.909 0.00 0.00 36.97 2.52
302 303 4.798882 TGGGTTGTATCACCTGTTCTTTT 58.201 39.130 0.00 0.00 36.97 2.27
303 304 5.205056 TGGGTTGTATCACCTGTTCTTTTT 58.795 37.500 0.00 0.00 36.97 1.94
304 305 6.366340 TGGGTTGTATCACCTGTTCTTTTTA 58.634 36.000 0.00 0.00 36.97 1.52
305 306 6.834451 TGGGTTGTATCACCTGTTCTTTTTAA 59.166 34.615 0.00 0.00 36.97 1.52
306 307 7.507616 TGGGTTGTATCACCTGTTCTTTTTAAT 59.492 33.333 0.00 0.00 36.97 1.40
307 308 8.027189 GGGTTGTATCACCTGTTCTTTTTAATC 58.973 37.037 0.00 0.00 36.97 1.75
308 309 7.749126 GGTTGTATCACCTGTTCTTTTTAATCG 59.251 37.037 0.00 0.00 33.50 3.34
309 310 8.500773 GTTGTATCACCTGTTCTTTTTAATCGA 58.499 33.333 0.00 0.00 0.00 3.59
310 311 8.610248 TGTATCACCTGTTCTTTTTAATCGAA 57.390 30.769 0.00 0.00 0.00 3.71
311 312 9.058174 TGTATCACCTGTTCTTTTTAATCGAAA 57.942 29.630 0.00 0.00 0.00 3.46
312 313 9.326339 GTATCACCTGTTCTTTTTAATCGAAAC 57.674 33.333 0.00 0.00 0.00 2.78
313 314 7.323049 TCACCTGTTCTTTTTAATCGAAACA 57.677 32.000 0.00 0.00 0.00 2.83
314 315 7.763356 TCACCTGTTCTTTTTAATCGAAACAA 58.237 30.769 0.00 0.00 0.00 2.83
315 316 7.913297 TCACCTGTTCTTTTTAATCGAAACAAG 59.087 33.333 0.00 0.00 0.00 3.16
316 317 6.695713 ACCTGTTCTTTTTAATCGAAACAAGC 59.304 34.615 0.00 0.00 0.00 4.01
317 318 6.143919 CCTGTTCTTTTTAATCGAAACAAGCC 59.856 38.462 0.00 0.00 0.00 4.35
318 319 5.683743 TGTTCTTTTTAATCGAAACAAGCCG 59.316 36.000 0.00 0.00 0.00 5.52
319 320 4.789784 TCTTTTTAATCGAAACAAGCCGG 58.210 39.130 0.00 0.00 0.00 6.13
320 321 4.276431 TCTTTTTAATCGAAACAAGCCGGT 59.724 37.500 1.90 0.00 0.00 5.28
321 322 5.469421 TCTTTTTAATCGAAACAAGCCGGTA 59.531 36.000 1.90 0.00 0.00 4.02
322 323 5.883503 TTTTAATCGAAACAAGCCGGTAT 57.116 34.783 1.90 0.00 0.00 2.73
323 324 4.868450 TTAATCGAAACAAGCCGGTATG 57.132 40.909 1.90 5.05 0.00 2.39
324 325 2.396590 ATCGAAACAAGCCGGTATGT 57.603 45.000 1.90 5.80 0.00 2.29
325 326 3.530265 ATCGAAACAAGCCGGTATGTA 57.470 42.857 13.55 0.51 0.00 2.29
326 327 3.316071 TCGAAACAAGCCGGTATGTAA 57.684 42.857 13.55 0.06 0.00 2.41
327 328 3.864243 TCGAAACAAGCCGGTATGTAAT 58.136 40.909 13.55 7.07 0.00 1.89
328 329 4.255301 TCGAAACAAGCCGGTATGTAATT 58.745 39.130 13.55 6.55 0.00 1.40
329 330 5.417811 TCGAAACAAGCCGGTATGTAATTA 58.582 37.500 13.55 0.32 0.00 1.40
330 331 5.873712 TCGAAACAAGCCGGTATGTAATTAA 59.126 36.000 13.55 0.00 0.00 1.40
331 332 6.370994 TCGAAACAAGCCGGTATGTAATTAAA 59.629 34.615 13.55 0.00 0.00 1.52
332 333 7.066043 TCGAAACAAGCCGGTATGTAATTAAAT 59.934 33.333 13.55 0.00 0.00 1.40
333 334 7.698970 CGAAACAAGCCGGTATGTAATTAAATT 59.301 33.333 13.55 4.09 0.00 1.82
334 335 8.696410 AAACAAGCCGGTATGTAATTAAATTG 57.304 30.769 13.55 0.00 0.00 2.32
335 336 7.399245 ACAAGCCGGTATGTAATTAAATTGT 57.601 32.000 11.86 0.00 0.00 2.71
336 337 7.477494 ACAAGCCGGTATGTAATTAAATTGTC 58.523 34.615 11.86 0.00 0.00 3.18
337 338 6.295039 AGCCGGTATGTAATTAAATTGTCG 57.705 37.500 1.90 0.00 0.00 4.35
338 339 6.050432 AGCCGGTATGTAATTAAATTGTCGA 58.950 36.000 1.90 0.00 0.00 4.20
339 340 6.539464 AGCCGGTATGTAATTAAATTGTCGAA 59.461 34.615 1.90 0.00 0.00 3.71
340 341 7.227910 AGCCGGTATGTAATTAAATTGTCGAAT 59.772 33.333 1.90 0.00 0.00 3.34
341 342 7.532884 GCCGGTATGTAATTAAATTGTCGAATC 59.467 37.037 1.90 0.00 0.00 2.52
342 343 8.552865 CCGGTATGTAATTAAATTGTCGAATCA 58.447 33.333 0.00 0.00 0.00 2.57
343 344 9.365311 CGGTATGTAATTAAATTGTCGAATCAC 57.635 33.333 0.00 0.00 0.00 3.06
351 352 5.779806 AAATTGTCGAATCACTAACTCGG 57.220 39.130 0.00 0.00 33.44 4.63
352 353 2.933495 TGTCGAATCACTAACTCGGG 57.067 50.000 0.00 0.00 33.44 5.14
353 354 1.135199 TGTCGAATCACTAACTCGGGC 60.135 52.381 0.00 0.00 33.44 6.13
354 355 0.458669 TCGAATCACTAACTCGGGCC 59.541 55.000 0.00 0.00 33.44 5.80
355 356 0.529992 CGAATCACTAACTCGGGCCC 60.530 60.000 13.57 13.57 0.00 5.80
356 357 0.539986 GAATCACTAACTCGGGCCCA 59.460 55.000 24.92 8.28 0.00 5.36
357 358 1.141053 GAATCACTAACTCGGGCCCAT 59.859 52.381 24.92 7.13 0.00 4.00
358 359 1.213296 ATCACTAACTCGGGCCCATT 58.787 50.000 24.92 15.32 0.00 3.16
359 360 0.251916 TCACTAACTCGGGCCCATTG 59.748 55.000 24.92 13.47 0.00 2.82
360 361 0.035439 CACTAACTCGGGCCCATTGT 60.035 55.000 24.92 14.20 0.00 2.71
361 362 0.252197 ACTAACTCGGGCCCATTGTC 59.748 55.000 24.92 0.00 0.00 3.18
362 363 0.810031 CTAACTCGGGCCCATTGTCG 60.810 60.000 24.92 6.53 0.00 4.35
363 364 1.259142 TAACTCGGGCCCATTGTCGA 61.259 55.000 24.92 11.17 0.00 4.20
364 365 2.119484 AACTCGGGCCCATTGTCGAA 62.119 55.000 24.92 0.00 0.00 3.71
365 366 1.153168 CTCGGGCCCATTGTCGAAT 60.153 57.895 24.92 0.00 0.00 3.34
366 367 1.153249 TCGGGCCCATTGTCGAATC 60.153 57.895 24.92 0.00 0.00 2.52
367 368 2.186826 CGGGCCCATTGTCGAATCC 61.187 63.158 24.92 0.00 0.00 3.01
368 369 1.227383 GGGCCCATTGTCGAATCCT 59.773 57.895 19.95 0.00 0.00 3.24
369 370 0.472471 GGGCCCATTGTCGAATCCTA 59.528 55.000 19.95 0.00 0.00 2.94
370 371 1.594331 GGCCCATTGTCGAATCCTAC 58.406 55.000 0.00 0.00 0.00 3.18
371 372 1.141053 GGCCCATTGTCGAATCCTACT 59.859 52.381 0.00 0.00 0.00 2.57
372 373 2.484889 GCCCATTGTCGAATCCTACTC 58.515 52.381 0.00 0.00 0.00 2.59
373 374 2.158957 GCCCATTGTCGAATCCTACTCA 60.159 50.000 0.00 0.00 0.00 3.41
374 375 3.722147 CCCATTGTCGAATCCTACTCAG 58.278 50.000 0.00 0.00 0.00 3.35
375 376 3.126831 CCATTGTCGAATCCTACTCAGC 58.873 50.000 0.00 0.00 0.00 4.26
376 377 3.430790 CCATTGTCGAATCCTACTCAGCA 60.431 47.826 0.00 0.00 0.00 4.41
377 378 3.953712 TTGTCGAATCCTACTCAGCAA 57.046 42.857 0.00 0.00 0.00 3.91
378 379 4.471904 TTGTCGAATCCTACTCAGCAAT 57.528 40.909 0.00 0.00 0.00 3.56
379 380 4.471904 TGTCGAATCCTACTCAGCAATT 57.528 40.909 0.00 0.00 0.00 2.32
380 381 4.183865 TGTCGAATCCTACTCAGCAATTG 58.816 43.478 0.00 0.00 0.00 2.32
381 382 4.184629 GTCGAATCCTACTCAGCAATTGT 58.815 43.478 7.40 0.00 0.00 2.71
382 383 4.268884 GTCGAATCCTACTCAGCAATTGTC 59.731 45.833 7.40 0.00 0.00 3.18
383 384 3.243877 CGAATCCTACTCAGCAATTGTCG 59.756 47.826 7.40 0.00 0.00 4.35
384 385 4.433615 GAATCCTACTCAGCAATTGTCGA 58.566 43.478 7.40 3.18 0.00 4.20
385 386 3.953712 TCCTACTCAGCAATTGTCGAA 57.046 42.857 7.40 0.00 0.00 3.71
386 387 4.471904 TCCTACTCAGCAATTGTCGAAT 57.528 40.909 7.40 0.00 0.00 3.34
387 388 4.832248 TCCTACTCAGCAATTGTCGAATT 58.168 39.130 7.40 0.00 31.52 2.17
388 389 4.870426 TCCTACTCAGCAATTGTCGAATTC 59.130 41.667 7.40 0.00 28.65 2.17
389 390 3.729526 ACTCAGCAATTGTCGAATTCG 57.270 42.857 21.78 21.78 41.45 3.34
398 399 4.785950 TCGAATTCGACTCAGCCG 57.214 55.556 25.96 0.00 44.22 5.52
399 400 2.177044 TCGAATTCGACTCAGCCGA 58.823 52.632 25.96 0.99 44.22 5.54
401 402 1.068125 TCGAATTCGACTCAGCCGAAA 60.068 47.619 25.96 0.00 46.97 3.46
402 403 1.724623 CGAATTCGACTCAGCCGAAAA 59.275 47.619 23.29 0.00 46.97 2.29
403 404 2.222596 CGAATTCGACTCAGCCGAAAAG 60.223 50.000 23.29 0.00 46.97 2.27
404 405 1.726853 ATTCGACTCAGCCGAAAAGG 58.273 50.000 0.00 0.00 46.97 3.11
405 406 0.320421 TTCGACTCAGCCGAAAAGGG 60.320 55.000 0.00 0.00 42.18 3.95
406 407 1.741770 CGACTCAGCCGAAAAGGGG 60.742 63.158 0.00 0.00 41.48 4.79
407 408 1.377333 GACTCAGCCGAAAAGGGGG 60.377 63.158 0.00 0.00 41.48 5.40
408 409 2.125766 GACTCAGCCGAAAAGGGGGT 62.126 60.000 0.00 0.00 41.48 4.95
409 410 0.838987 ACTCAGCCGAAAAGGGGGTA 60.839 55.000 0.00 0.00 41.48 3.69
410 411 0.392595 CTCAGCCGAAAAGGGGGTAC 60.393 60.000 0.00 0.00 41.48 3.34
411 412 0.838987 TCAGCCGAAAAGGGGGTACT 60.839 55.000 0.00 0.00 41.48 2.73
412 413 0.037734 CAGCCGAAAAGGGGGTACTT 59.962 55.000 0.00 0.00 41.48 2.24
413 414 1.279846 CAGCCGAAAAGGGGGTACTTA 59.720 52.381 0.00 0.00 41.48 2.24
414 415 1.280133 AGCCGAAAAGGGGGTACTTAC 59.720 52.381 0.00 0.00 41.48 2.34
415 416 2.008543 GCCGAAAAGGGGGTACTTACG 61.009 57.143 0.00 0.00 41.48 3.18
416 417 1.276138 CCGAAAAGGGGGTACTTACGT 59.724 52.381 0.00 0.00 35.97 3.57
417 418 2.340337 CGAAAAGGGGGTACTTACGTG 58.660 52.381 0.00 0.00 0.00 4.49
418 419 2.079158 GAAAAGGGGGTACTTACGTGC 58.921 52.381 0.00 0.00 0.00 5.34
419 420 0.037046 AAAGGGGGTACTTACGTGCG 60.037 55.000 0.00 0.00 0.00 5.34
420 421 1.891722 AAGGGGGTACTTACGTGCGG 61.892 60.000 0.00 0.00 0.00 5.69
421 422 2.350458 GGGGGTACTTACGTGCGGA 61.350 63.158 0.00 0.00 0.00 5.54
422 423 1.591183 GGGGTACTTACGTGCGGAA 59.409 57.895 0.00 0.00 0.00 4.30
423 424 0.737367 GGGGTACTTACGTGCGGAAC 60.737 60.000 0.00 0.00 0.00 3.62
437 438 2.768834 GGAACGAGCCAATCTGGTC 58.231 57.895 0.00 0.00 40.46 4.02
438 439 0.250513 GGAACGAGCCAATCTGGTCT 59.749 55.000 0.00 0.00 40.46 3.85
439 440 1.339151 GGAACGAGCCAATCTGGTCTT 60.339 52.381 0.00 0.00 40.46 3.01
440 441 2.427506 GAACGAGCCAATCTGGTCTTT 58.572 47.619 0.00 0.00 40.46 2.52
441 442 1.813513 ACGAGCCAATCTGGTCTTTG 58.186 50.000 0.00 0.00 40.46 2.77
442 443 1.347707 ACGAGCCAATCTGGTCTTTGA 59.652 47.619 0.00 0.00 40.46 2.69
443 444 2.026822 ACGAGCCAATCTGGTCTTTGAT 60.027 45.455 0.00 0.00 40.46 2.57
444 445 3.197766 ACGAGCCAATCTGGTCTTTGATA 59.802 43.478 0.00 0.00 40.46 2.15
445 446 4.191544 CGAGCCAATCTGGTCTTTGATAA 58.808 43.478 0.00 0.00 40.46 1.75
446 447 4.818546 CGAGCCAATCTGGTCTTTGATAAT 59.181 41.667 0.00 0.00 40.46 1.28
447 448 5.991606 CGAGCCAATCTGGTCTTTGATAATA 59.008 40.000 0.00 0.00 40.46 0.98
448 449 6.483307 CGAGCCAATCTGGTCTTTGATAATAA 59.517 38.462 0.00 0.00 40.46 1.40
449 450 7.012327 CGAGCCAATCTGGTCTTTGATAATAAA 59.988 37.037 0.00 0.00 40.46 1.40
450 451 8.593945 AGCCAATCTGGTCTTTGATAATAAAA 57.406 30.769 0.00 0.00 40.46 1.52
451 452 8.689972 AGCCAATCTGGTCTTTGATAATAAAAG 58.310 33.333 0.00 0.00 40.46 2.27
452 453 8.686334 GCCAATCTGGTCTTTGATAATAAAAGA 58.314 33.333 0.00 0.00 40.46 2.52
464 465 9.477484 TTTGATAATAAAAGAGATAGACGGAGC 57.523 33.333 0.00 0.00 0.00 4.70
465 466 8.410673 TGATAATAAAAGAGATAGACGGAGCT 57.589 34.615 0.00 0.00 0.00 4.09
466 467 8.300286 TGATAATAAAAGAGATAGACGGAGCTG 58.700 37.037 0.00 0.00 0.00 4.24
467 468 3.810310 AAAAGAGATAGACGGAGCTGG 57.190 47.619 0.00 0.00 0.00 4.85
468 469 2.445682 AAGAGATAGACGGAGCTGGT 57.554 50.000 0.00 0.00 0.00 4.00
469 470 3.579534 AAGAGATAGACGGAGCTGGTA 57.420 47.619 0.00 0.00 0.00 3.25
470 471 3.799432 AGAGATAGACGGAGCTGGTAT 57.201 47.619 0.00 0.00 0.00 2.73
471 472 3.417101 AGAGATAGACGGAGCTGGTATG 58.583 50.000 0.00 0.00 0.00 2.39
472 473 3.073209 AGAGATAGACGGAGCTGGTATGA 59.927 47.826 0.00 0.00 0.00 2.15
473 474 3.821600 GAGATAGACGGAGCTGGTATGAA 59.178 47.826 0.00 0.00 0.00 2.57
474 475 4.215908 AGATAGACGGAGCTGGTATGAAA 58.784 43.478 0.00 0.00 0.00 2.69
475 476 4.835615 AGATAGACGGAGCTGGTATGAAAT 59.164 41.667 0.00 0.00 0.00 2.17
476 477 3.460857 AGACGGAGCTGGTATGAAATC 57.539 47.619 0.00 0.00 0.00 2.17
477 478 2.766263 AGACGGAGCTGGTATGAAATCA 59.234 45.455 0.00 0.00 0.00 2.57
478 479 3.126831 GACGGAGCTGGTATGAAATCAG 58.873 50.000 0.00 0.00 0.00 2.90
479 480 2.766263 ACGGAGCTGGTATGAAATCAGA 59.234 45.455 0.00 0.00 0.00 3.27
480 481 3.126831 CGGAGCTGGTATGAAATCAGAC 58.873 50.000 0.00 0.00 37.35 3.51
481 482 3.126831 GGAGCTGGTATGAAATCAGACG 58.873 50.000 0.00 0.00 38.85 4.18
482 483 2.541762 GAGCTGGTATGAAATCAGACGC 59.458 50.000 0.00 1.89 38.85 5.19
483 484 2.093500 AGCTGGTATGAAATCAGACGCA 60.093 45.455 9.57 5.49 38.85 5.24
484 485 2.677836 GCTGGTATGAAATCAGACGCAA 59.322 45.455 2.44 0.00 38.85 4.85
485 486 3.126858 GCTGGTATGAAATCAGACGCAAA 59.873 43.478 2.44 0.00 38.85 3.68
486 487 4.379394 GCTGGTATGAAATCAGACGCAAAA 60.379 41.667 2.44 0.00 38.85 2.44
487 488 5.697473 TGGTATGAAATCAGACGCAAAAA 57.303 34.783 2.44 0.00 38.85 1.94
511 512 7.801716 AAGGAAAGAAAATAAAAACCAAGCC 57.198 32.000 0.00 0.00 0.00 4.35
512 513 5.989168 AGGAAAGAAAATAAAAACCAAGCCG 59.011 36.000 0.00 0.00 0.00 5.52
513 514 5.178623 GGAAAGAAAATAAAAACCAAGCCGG 59.821 40.000 0.00 0.00 42.50 6.13
525 526 1.553704 CCAAGCCGGTATATCCTACCC 59.446 57.143 1.90 0.00 34.15 3.69
526 527 1.203994 CAAGCCGGTATATCCTACCCG 59.796 57.143 1.90 0.00 40.12 5.28
529 530 2.196319 CGGTATATCCTACCCGGCC 58.804 63.158 0.00 0.00 36.84 6.13
530 531 1.660560 CGGTATATCCTACCCGGCCG 61.661 65.000 21.04 21.04 36.84 6.13
531 532 1.514553 GTATATCCTACCCGGCCGC 59.485 63.158 22.85 0.00 0.00 6.53
532 533 1.077086 TATATCCTACCCGGCCGCA 59.923 57.895 22.85 5.81 0.00 5.69
533 534 0.968901 TATATCCTACCCGGCCGCAG 60.969 60.000 22.85 16.32 0.00 5.18
534 535 3.631672 TATATCCTACCCGGCCGCAGT 62.632 57.143 22.85 21.63 0.00 4.40
542 543 4.688419 CGGCCGCAGTTGCAACAG 62.688 66.667 30.11 23.61 42.21 3.16
545 546 3.594775 CCGCAGTTGCAACAGCCA 61.595 61.111 32.88 0.00 42.21 4.75
546 547 2.412525 CGCAGTTGCAACAGCCAA 59.587 55.556 32.88 0.00 42.21 4.52
547 548 1.945662 CGCAGTTGCAACAGCCAAC 60.946 57.895 32.88 12.86 42.11 3.77
548 549 1.141449 GCAGTTGCAACAGCCAACA 59.859 52.632 30.40 0.00 43.74 3.33
549 550 0.872881 GCAGTTGCAACAGCCAACAG 60.873 55.000 30.40 11.79 43.74 3.16
550 551 0.872881 CAGTTGCAACAGCCAACAGC 60.873 55.000 30.11 0.04 43.74 4.40
560 561 3.052082 CCAACAGCTGCCGGAGTG 61.052 66.667 15.27 2.48 0.00 3.51
561 562 2.281070 CAACAGCTGCCGGAGTGT 60.281 61.111 15.27 0.00 0.00 3.55
562 563 2.281070 AACAGCTGCCGGAGTGTG 60.281 61.111 15.27 0.00 0.00 3.82
563 564 4.996434 ACAGCTGCCGGAGTGTGC 62.996 66.667 15.27 0.37 0.00 4.57
564 565 4.994471 CAGCTGCCGGAGTGTGCA 62.994 66.667 5.05 0.00 35.86 4.57
565 566 4.025858 AGCTGCCGGAGTGTGCAT 62.026 61.111 5.05 0.00 36.79 3.96
566 567 3.503363 GCTGCCGGAGTGTGCATC 61.503 66.667 5.05 0.00 36.79 3.91
567 568 3.190849 CTGCCGGAGTGTGCATCG 61.191 66.667 5.05 0.00 36.79 3.84
568 569 3.939837 CTGCCGGAGTGTGCATCGT 62.940 63.158 5.05 0.00 36.79 3.73
569 570 3.188786 GCCGGAGTGTGCATCGTC 61.189 66.667 5.05 0.00 0.00 4.20
570 571 2.880879 CCGGAGTGTGCATCGTCG 60.881 66.667 0.00 0.00 0.00 5.12
571 572 2.126463 CGGAGTGTGCATCGTCGT 60.126 61.111 0.00 0.00 0.00 4.34
572 573 2.152699 CGGAGTGTGCATCGTCGTC 61.153 63.158 0.00 0.00 0.00 4.20
573 574 2.152699 GGAGTGTGCATCGTCGTCG 61.153 63.158 0.00 0.00 38.55 5.12
574 575 2.778997 GAGTGTGCATCGTCGTCGC 61.779 63.158 0.00 0.00 36.96 5.19
575 576 3.838795 GTGTGCATCGTCGTCGCC 61.839 66.667 0.00 0.24 36.96 5.54
576 577 4.350441 TGTGCATCGTCGTCGCCA 62.350 61.111 0.00 2.37 36.96 5.69
577 578 3.545481 GTGCATCGTCGTCGCCAG 61.545 66.667 0.00 0.00 36.96 4.85
578 579 4.050934 TGCATCGTCGTCGCCAGT 62.051 61.111 0.00 0.00 36.96 4.00
579 580 2.809601 GCATCGTCGTCGCCAGTT 60.810 61.111 0.00 0.00 36.96 3.16
580 581 3.071459 GCATCGTCGTCGCCAGTTG 62.071 63.158 0.00 0.00 36.96 3.16
581 582 1.443702 CATCGTCGTCGCCAGTTGA 60.444 57.895 0.00 0.00 36.96 3.18
582 583 0.802222 CATCGTCGTCGCCAGTTGAT 60.802 55.000 0.00 0.00 36.96 2.57
583 584 0.802222 ATCGTCGTCGCCAGTTGATG 60.802 55.000 0.00 0.00 36.96 3.07
584 585 1.443702 CGTCGTCGCCAGTTGATGA 60.444 57.895 0.00 0.00 0.00 2.92
585 586 1.674611 CGTCGTCGCCAGTTGATGAC 61.675 60.000 5.48 5.48 44.94 3.06
586 587 0.666274 GTCGTCGCCAGTTGATGACA 60.666 55.000 9.74 0.00 46.69 3.58
587 588 0.666274 TCGTCGCCAGTTGATGACAC 60.666 55.000 0.00 0.00 0.00 3.67
588 589 1.781555 GTCGCCAGTTGATGACACG 59.218 57.895 0.00 0.00 0.00 4.49
589 590 0.666274 GTCGCCAGTTGATGACACGA 60.666 55.000 0.00 0.00 0.00 4.35
590 591 0.032815 TCGCCAGTTGATGACACGAA 59.967 50.000 0.00 0.00 30.74 3.85
591 592 0.439985 CGCCAGTTGATGACACGAAG 59.560 55.000 0.00 0.00 0.00 3.79
669 670 6.348540 GCGACCACAAACTCATCTTCTATTTT 60.349 38.462 0.00 0.00 0.00 1.82
673 674 7.660208 ACCACAAACTCATCTTCTATTTTACGT 59.340 33.333 0.00 0.00 0.00 3.57
683 684 0.866906 TATTTTACGTCCCGCTCGCG 60.867 55.000 0.00 0.00 39.44 5.87
722 728 2.283604 ATCCCACAAAACCCCCGC 60.284 61.111 0.00 0.00 0.00 6.13
807 818 4.314440 TGCCCATCGCCGCTATCC 62.314 66.667 0.00 0.00 36.24 2.59
910 921 0.904649 CCATCCATCGGCCTAGCATA 59.095 55.000 0.00 0.00 0.00 3.14
1053 1064 3.655211 CTGCAGGGCAAGGAGGGT 61.655 66.667 5.57 0.00 38.41 4.34
1347 1358 0.398522 ACCCGGAGCTCATGGACATA 60.399 55.000 23.32 0.00 0.00 2.29
1554 1575 4.361451 AAATTCCGAGCTAATGCACAAG 57.639 40.909 0.00 0.00 42.74 3.16
1555 1576 1.086696 TTCCGAGCTAATGCACAAGC 58.913 50.000 13.03 13.03 42.74 4.01
1615 1636 1.902508 CAGGAGGTACAGCTCCAAGAA 59.097 52.381 25.14 0.00 41.98 2.52
1617 1638 3.054802 CAGGAGGTACAGCTCCAAGAAAT 60.055 47.826 25.14 4.81 41.98 2.17
1782 1806 2.421424 CCCTGCTGCTCTTGATAAACAC 59.579 50.000 0.00 0.00 0.00 3.32
1822 1846 0.326927 CAAAAACCGGCTAGGAGGGA 59.673 55.000 0.00 0.00 45.00 4.20
1823 1847 0.327259 AAAAACCGGCTAGGAGGGAC 59.673 55.000 0.00 0.00 45.00 4.46
1831 1855 1.953017 CTAGGAGGGACGCTCATCG 59.047 63.158 19.96 6.59 45.38 3.84
1864 1888 0.460284 ACCGGCAACATTAGCTCGAG 60.460 55.000 8.45 8.45 0.00 4.04
1871 1895 0.101399 ACATTAGCTCGAGCAGTCGG 59.899 55.000 36.87 23.50 46.80 4.79
1902 1926 3.406764 CCAGAGACAGGAAAAGGAAGTG 58.593 50.000 0.00 0.00 0.00 3.16
2053 2079 8.180267 ACGATGAATTTGAGATTTCTGTGAATC 58.820 33.333 0.00 0.00 36.50 2.52
2062 2088 7.768240 TGAGATTTCTGTGAATCATCCATTTG 58.232 34.615 0.00 0.00 38.27 2.32
2097 2123 9.868277 GATCTTCTGAATGTATATAACCAGAGG 57.132 37.037 0.00 0.00 33.02 3.69
2156 2182 9.143155 TCTACCTAACTAGATGCATGACATTTA 57.857 33.333 2.46 0.00 39.84 1.40
2176 2202 7.400052 ACATTTATCTATGCAAAAGAAACCCCT 59.600 33.333 6.25 0.00 0.00 4.79
2178 2204 5.921962 ATCTATGCAAAAGAAACCCCTTC 57.078 39.130 6.25 0.00 0.00 3.46
2187 2213 3.067684 AGAAACCCCTTCCACAATACG 57.932 47.619 0.00 0.00 34.21 3.06
2198 2224 1.199097 CCACAATACGGAAACCAGCAC 59.801 52.381 0.00 0.00 0.00 4.40
2242 2269 2.422591 GGTTCACGACACCCGGAA 59.577 61.111 0.73 0.00 43.93 4.30
2243 2270 1.227615 GGTTCACGACACCCGGAAA 60.228 57.895 0.73 0.00 43.93 3.13
2244 2271 0.814812 GGTTCACGACACCCGGAAAA 60.815 55.000 0.73 0.00 43.93 2.29
2245 2272 0.305617 GTTCACGACACCCGGAAAAC 59.694 55.000 0.73 0.00 43.93 2.43
2246 2273 0.107800 TTCACGACACCCGGAAAACA 60.108 50.000 0.73 0.00 43.93 2.83
2247 2274 0.107800 TCACGACACCCGGAAAACAA 60.108 50.000 0.73 0.00 43.93 2.83
2248 2275 0.948678 CACGACACCCGGAAAACAAT 59.051 50.000 0.73 0.00 43.93 2.71
2249 2276 1.069500 CACGACACCCGGAAAACAATC 60.069 52.381 0.73 0.00 43.93 2.67
2250 2277 1.202722 ACGACACCCGGAAAACAATCT 60.203 47.619 0.73 0.00 43.93 2.40
2251 2278 1.877443 CGACACCCGGAAAACAATCTT 59.123 47.619 0.73 0.00 33.91 2.40
2252 2279 3.068560 CGACACCCGGAAAACAATCTTA 58.931 45.455 0.73 0.00 33.91 2.10
2253 2280 3.499157 CGACACCCGGAAAACAATCTTAA 59.501 43.478 0.73 0.00 33.91 1.85
2254 2281 4.612033 CGACACCCGGAAAACAATCTTAAC 60.612 45.833 0.73 0.00 33.91 2.01
2255 2282 3.570975 ACACCCGGAAAACAATCTTAACC 59.429 43.478 0.73 0.00 0.00 2.85
2256 2283 3.824443 CACCCGGAAAACAATCTTAACCT 59.176 43.478 0.73 0.00 0.00 3.50
2257 2284 4.077108 ACCCGGAAAACAATCTTAACCTC 58.923 43.478 0.73 0.00 0.00 3.85
2258 2285 3.442625 CCCGGAAAACAATCTTAACCTCC 59.557 47.826 0.73 0.00 0.00 4.30
2259 2286 4.332828 CCGGAAAACAATCTTAACCTCCT 58.667 43.478 0.00 0.00 0.00 3.69
2260 2287 4.765339 CCGGAAAACAATCTTAACCTCCTT 59.235 41.667 0.00 0.00 0.00 3.36
2261 2288 5.106277 CCGGAAAACAATCTTAACCTCCTTC 60.106 44.000 0.00 0.00 0.00 3.46
2262 2289 5.472137 CGGAAAACAATCTTAACCTCCTTCA 59.528 40.000 0.00 0.00 0.00 3.02
2263 2290 6.348540 CGGAAAACAATCTTAACCTCCTTCAG 60.349 42.308 0.00 0.00 0.00 3.02
2264 2291 5.966742 AAACAATCTTAACCTCCTTCAGC 57.033 39.130 0.00 0.00 0.00 4.26
2265 2292 4.640771 ACAATCTTAACCTCCTTCAGCA 57.359 40.909 0.00 0.00 0.00 4.41
2266 2293 4.985538 ACAATCTTAACCTCCTTCAGCAA 58.014 39.130 0.00 0.00 0.00 3.91
2267 2294 5.006386 ACAATCTTAACCTCCTTCAGCAAG 58.994 41.667 0.00 0.00 0.00 4.01
2268 2295 4.917906 ATCTTAACCTCCTTCAGCAAGT 57.082 40.909 0.00 0.00 0.00 3.16
2269 2296 4.706842 TCTTAACCTCCTTCAGCAAGTT 57.293 40.909 0.00 0.00 0.00 2.66
2270 2297 4.642429 TCTTAACCTCCTTCAGCAAGTTC 58.358 43.478 0.00 0.00 0.00 3.01
2271 2298 1.884235 AACCTCCTTCAGCAAGTTCG 58.116 50.000 0.00 0.00 0.00 3.95
2274 2301 1.541233 CCTCCTTCAGCAAGTTCGTGT 60.541 52.381 0.00 0.00 0.00 4.49
2286 2313 4.219033 CAAGTTCGTGTGGAAATACAAGC 58.781 43.478 0.00 0.00 36.14 4.01
2304 2331 3.969287 AGCTAGATTGCAGTGACTGAA 57.031 42.857 18.18 1.76 32.44 3.02
2309 2336 5.447010 GCTAGATTGCAGTGACTGAAATGAC 60.447 44.000 22.95 9.89 39.60 3.06
2312 2339 0.179240 GCAGTGACTGAAATGACGCG 60.179 55.000 18.18 3.53 32.44 6.01
2375 2402 4.130118 CTCTCCACAGCAGTAAAAGTGTT 58.870 43.478 0.00 0.00 0.00 3.32
2430 2457 3.067180 GCTTCATGGACACATACCATTGG 59.933 47.826 0.00 0.00 44.51 3.16
2479 2506 3.371097 GACCGGAGCGCCATCTTCA 62.371 63.158 9.46 0.00 0.00 3.02
2674 2701 3.866379 AAGGGCATCAACCAGCGCA 62.866 57.895 11.47 0.00 45.01 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.189723 CCTTTTTGCATTTTGTTTCTTTTTCAA 57.810 25.926 0.00 0.00 0.00 2.69
41 42 8.571336 TCCTTTTTGCATTTTGTTTCTTTTTCA 58.429 25.926 0.00 0.00 0.00 2.69
42 43 8.962857 TCCTTTTTGCATTTTGTTTCTTTTTC 57.037 26.923 0.00 0.00 0.00 2.29
43 44 9.926158 ATTCCTTTTTGCATTTTGTTTCTTTTT 57.074 22.222 0.00 0.00 0.00 1.94
124 125 2.100749 CCAGCCAGTTTTCTCCGTTTTT 59.899 45.455 0.00 0.00 0.00 1.94
125 126 1.681264 CCAGCCAGTTTTCTCCGTTTT 59.319 47.619 0.00 0.00 0.00 2.43
126 127 1.133915 TCCAGCCAGTTTTCTCCGTTT 60.134 47.619 0.00 0.00 0.00 3.60
127 128 0.472471 TCCAGCCAGTTTTCTCCGTT 59.528 50.000 0.00 0.00 0.00 4.44
128 129 0.472471 TTCCAGCCAGTTTTCTCCGT 59.528 50.000 0.00 0.00 0.00 4.69
129 130 1.740025 GATTCCAGCCAGTTTTCTCCG 59.260 52.381 0.00 0.00 0.00 4.63
130 131 1.740025 CGATTCCAGCCAGTTTTCTCC 59.260 52.381 0.00 0.00 0.00 3.71
131 132 2.416893 GACGATTCCAGCCAGTTTTCTC 59.583 50.000 0.00 0.00 0.00 2.87
132 133 2.039084 AGACGATTCCAGCCAGTTTTCT 59.961 45.455 0.00 0.00 0.00 2.52
133 134 2.416893 GAGACGATTCCAGCCAGTTTTC 59.583 50.000 0.00 0.00 0.00 2.29
134 135 2.224523 TGAGACGATTCCAGCCAGTTTT 60.225 45.455 0.00 0.00 0.00 2.43
135 136 1.347707 TGAGACGATTCCAGCCAGTTT 59.652 47.619 0.00 0.00 0.00 2.66
136 137 0.976641 TGAGACGATTCCAGCCAGTT 59.023 50.000 0.00 0.00 0.00 3.16
137 138 0.976641 TTGAGACGATTCCAGCCAGT 59.023 50.000 0.00 0.00 0.00 4.00
138 139 1.066573 ACTTGAGACGATTCCAGCCAG 60.067 52.381 0.00 0.00 0.00 4.85
139 140 0.976641 ACTTGAGACGATTCCAGCCA 59.023 50.000 0.00 0.00 0.00 4.75
140 141 2.482142 CCTACTTGAGACGATTCCAGCC 60.482 54.545 0.00 0.00 0.00 4.85
141 142 2.427453 TCCTACTTGAGACGATTCCAGC 59.573 50.000 0.00 0.00 0.00 4.85
142 143 4.035278 GTCCTACTTGAGACGATTCCAG 57.965 50.000 0.00 0.00 0.00 3.86
150 151 1.516603 GGCGCGTCCTACTTGAGAC 60.517 63.158 8.43 0.00 0.00 3.36
151 152 2.707849 GGGCGCGTCCTACTTGAGA 61.708 63.158 25.46 0.00 34.39 3.27
152 153 2.202756 GGGCGCGTCCTACTTGAG 60.203 66.667 25.46 0.00 34.39 3.02
153 154 2.842188 TAGGGGCGCGTCCTACTTGA 62.842 60.000 31.31 7.77 35.92 3.02
154 155 2.420568 TAGGGGCGCGTCCTACTTG 61.421 63.158 31.31 0.00 35.92 3.16
155 156 2.043652 TAGGGGCGCGTCCTACTT 60.044 61.111 31.31 15.20 35.92 2.24
158 159 1.228063 CTAGTAGGGGCGCGTCCTA 60.228 63.158 31.31 25.09 35.92 2.94
159 160 2.518825 CTAGTAGGGGCGCGTCCT 60.519 66.667 31.31 26.15 38.36 3.85
160 161 1.103398 TAACTAGTAGGGGCGCGTCC 61.103 60.000 24.67 24.67 0.00 4.79
161 162 0.029967 GTAACTAGTAGGGGCGCGTC 59.970 60.000 8.43 4.38 0.00 5.19
162 163 1.387295 GGTAACTAGTAGGGGCGCGT 61.387 60.000 8.43 0.47 0.00 6.01
163 164 1.361632 GGTAACTAGTAGGGGCGCG 59.638 63.158 0.00 0.00 0.00 6.86
164 165 0.103755 GTGGTAACTAGTAGGGGCGC 59.896 60.000 0.00 0.00 37.61 6.53
165 166 0.749049 GGTGGTAACTAGTAGGGGCG 59.251 60.000 0.00 0.00 37.61 6.13
166 167 1.870064 TGGTGGTAACTAGTAGGGGC 58.130 55.000 0.00 0.00 37.61 5.80
167 168 2.167075 CGTTGGTGGTAACTAGTAGGGG 59.833 54.545 0.00 0.00 37.61 4.79
168 169 2.167075 CCGTTGGTGGTAACTAGTAGGG 59.833 54.545 0.00 0.00 37.61 3.53
169 170 2.167075 CCCGTTGGTGGTAACTAGTAGG 59.833 54.545 0.00 0.00 37.61 3.18
170 171 3.091545 TCCCGTTGGTGGTAACTAGTAG 58.908 50.000 0.00 0.00 37.61 2.57
171 172 2.825532 GTCCCGTTGGTGGTAACTAGTA 59.174 50.000 0.00 0.00 37.61 1.82
172 173 1.620323 GTCCCGTTGGTGGTAACTAGT 59.380 52.381 0.00 0.00 37.61 2.57
173 174 1.897802 AGTCCCGTTGGTGGTAACTAG 59.102 52.381 0.00 0.00 37.61 2.57
174 175 2.014010 AGTCCCGTTGGTGGTAACTA 57.986 50.000 0.00 0.00 37.61 2.24
175 176 1.134228 AAGTCCCGTTGGTGGTAACT 58.866 50.000 0.00 0.00 37.61 2.24
176 177 1.232119 CAAGTCCCGTTGGTGGTAAC 58.768 55.000 0.00 0.00 0.00 2.50
177 178 0.108963 CCAAGTCCCGTTGGTGGTAA 59.891 55.000 0.00 0.00 41.96 2.85
178 179 1.756024 CCAAGTCCCGTTGGTGGTA 59.244 57.895 0.00 0.00 41.96 3.25
179 180 2.513895 CCAAGTCCCGTTGGTGGT 59.486 61.111 0.00 0.00 41.96 4.16
180 181 2.282180 CCCAAGTCCCGTTGGTGG 60.282 66.667 2.12 0.00 44.98 4.61
181 182 2.983592 GCCCAAGTCCCGTTGGTG 60.984 66.667 2.12 0.00 44.98 4.17
182 183 4.636435 CGCCCAAGTCCCGTTGGT 62.636 66.667 2.12 0.00 44.98 3.67
184 185 4.323477 TCCGCCCAAGTCCCGTTG 62.323 66.667 0.00 0.00 0.00 4.10
185 186 4.016706 CTCCGCCCAAGTCCCGTT 62.017 66.667 0.00 0.00 0.00 4.44
187 188 4.760047 CACTCCGCCCAAGTCCCG 62.760 72.222 0.00 0.00 0.00 5.14
189 190 3.959991 GAGCACTCCGCCCAAGTCC 62.960 68.421 0.00 0.00 44.04 3.85
190 191 1.605058 TAGAGCACTCCGCCCAAGTC 61.605 60.000 0.00 0.00 44.04 3.01
191 192 0.978146 ATAGAGCACTCCGCCCAAGT 60.978 55.000 0.00 0.00 44.04 3.16
192 193 0.179000 AATAGAGCACTCCGCCCAAG 59.821 55.000 0.00 0.00 44.04 3.61
193 194 0.618458 AAATAGAGCACTCCGCCCAA 59.382 50.000 0.00 0.00 44.04 4.12
194 195 1.491668 TAAATAGAGCACTCCGCCCA 58.508 50.000 0.00 0.00 44.04 5.36
195 196 2.841442 ATAAATAGAGCACTCCGCCC 57.159 50.000 0.00 0.00 44.04 6.13
196 197 4.884247 AGTAATAAATAGAGCACTCCGCC 58.116 43.478 0.00 0.00 44.04 6.13
197 198 6.846325 AAAGTAATAAATAGAGCACTCCGC 57.154 37.500 0.00 0.00 42.91 5.54
198 199 9.530633 AGTTAAAGTAATAAATAGAGCACTCCG 57.469 33.333 0.00 0.00 0.00 4.63
203 204 8.889717 GCCACAGTTAAAGTAATAAATAGAGCA 58.110 33.333 0.00 0.00 0.00 4.26
204 205 8.062448 CGCCACAGTTAAAGTAATAAATAGAGC 58.938 37.037 0.00 0.00 0.00 4.09
205 206 8.062448 GCGCCACAGTTAAAGTAATAAATAGAG 58.938 37.037 0.00 0.00 0.00 2.43
206 207 7.254185 CGCGCCACAGTTAAAGTAATAAATAGA 60.254 37.037 0.00 0.00 0.00 1.98
207 208 6.844279 CGCGCCACAGTTAAAGTAATAAATAG 59.156 38.462 0.00 0.00 0.00 1.73
208 209 6.707711 CGCGCCACAGTTAAAGTAATAAATA 58.292 36.000 0.00 0.00 0.00 1.40
209 210 5.565695 CGCGCCACAGTTAAAGTAATAAAT 58.434 37.500 0.00 0.00 0.00 1.40
210 211 4.669708 GCGCGCCACAGTTAAAGTAATAAA 60.670 41.667 23.24 0.00 0.00 1.40
211 212 3.181518 GCGCGCCACAGTTAAAGTAATAA 60.182 43.478 23.24 0.00 0.00 1.40
212 213 2.349275 GCGCGCCACAGTTAAAGTAATA 59.651 45.455 23.24 0.00 0.00 0.98
213 214 1.129811 GCGCGCCACAGTTAAAGTAAT 59.870 47.619 23.24 0.00 0.00 1.89
214 215 0.513820 GCGCGCCACAGTTAAAGTAA 59.486 50.000 23.24 0.00 0.00 2.24
215 216 1.619526 CGCGCGCCACAGTTAAAGTA 61.620 55.000 27.72 0.00 0.00 2.24
216 217 2.943653 GCGCGCCACAGTTAAAGT 59.056 55.556 23.24 0.00 0.00 2.66
217 218 2.165362 TTCGCGCGCCACAGTTAAAG 62.165 55.000 27.95 7.29 0.00 1.85
218 219 1.570347 ATTCGCGCGCCACAGTTAAA 61.570 50.000 27.95 11.42 0.00 1.52
219 220 2.030401 ATTCGCGCGCCACAGTTAA 61.030 52.632 27.95 12.25 0.00 2.01
220 221 2.433491 ATTCGCGCGCCACAGTTA 60.433 55.556 27.95 1.08 0.00 2.24
221 222 4.088762 CATTCGCGCGCCACAGTT 62.089 61.111 27.95 1.20 0.00 3.16
223 224 4.799473 CACATTCGCGCGCCACAG 62.799 66.667 27.95 15.91 0.00 3.66
227 228 2.646799 AATAAGCACATTCGCGCGCC 62.647 55.000 27.95 9.60 36.85 6.53
228 229 1.297598 AATAAGCACATTCGCGCGC 60.298 52.632 27.95 23.91 36.85 6.86
229 230 1.523368 GCAATAAGCACATTCGCGCG 61.523 55.000 26.76 26.76 44.79 6.86
230 231 1.523368 CGCAATAAGCACATTCGCGC 61.523 55.000 0.00 0.00 46.13 6.86
231 232 0.026156 TCGCAATAAGCACATTCGCG 59.974 50.000 0.00 0.00 46.13 5.87
232 233 1.062587 ACTCGCAATAAGCACATTCGC 59.937 47.619 0.00 0.00 46.13 4.70
233 234 2.537529 CCACTCGCAATAAGCACATTCG 60.538 50.000 0.00 0.00 46.13 3.34
234 235 2.792542 GCCACTCGCAATAAGCACATTC 60.793 50.000 0.00 0.00 46.13 2.67
235 236 1.133025 GCCACTCGCAATAAGCACATT 59.867 47.619 0.00 0.00 46.13 2.71
236 237 0.734889 GCCACTCGCAATAAGCACAT 59.265 50.000 0.00 0.00 46.13 3.21
237 238 0.321564 AGCCACTCGCAATAAGCACA 60.322 50.000 0.00 0.00 46.13 4.57
238 239 0.097674 CAGCCACTCGCAATAAGCAC 59.902 55.000 0.00 0.00 46.13 4.40
239 240 1.647545 GCAGCCACTCGCAATAAGCA 61.648 55.000 0.00 0.00 46.13 3.91
240 241 1.063166 GCAGCCACTCGCAATAAGC 59.937 57.895 0.00 0.00 41.38 3.09
241 242 0.804364 TTGCAGCCACTCGCAATAAG 59.196 50.000 0.00 0.00 42.93 1.73
242 243 2.939781 TTGCAGCCACTCGCAATAA 58.060 47.368 0.00 0.00 42.93 1.40
243 244 4.711892 TTGCAGCCACTCGCAATA 57.288 50.000 0.00 0.00 42.93 1.90
245 246 2.203195 AGTTGCAGCCACTCGCAA 60.203 55.556 0.00 0.00 45.45 4.85
246 247 2.974148 CAGTTGCAGCCACTCGCA 60.974 61.111 0.00 0.00 41.38 5.10
247 248 4.395583 GCAGTTGCAGCCACTCGC 62.396 66.667 0.00 1.17 41.59 5.03
248 249 2.256591 AAGCAGTTGCAGCCACTCG 61.257 57.895 6.90 0.00 45.16 4.18
249 250 1.285023 CAAGCAGTTGCAGCCACTC 59.715 57.895 6.90 0.00 45.16 3.51
250 251 3.440151 CAAGCAGTTGCAGCCACT 58.560 55.556 6.90 0.00 45.16 4.00
258 259 1.298563 CCACACGTGCAAGCAGTTG 60.299 57.895 17.22 3.31 36.67 3.16
259 260 1.312371 AACCACACGTGCAAGCAGTT 61.312 50.000 17.22 7.49 0.00 3.16
260 261 1.312371 AAACCACACGTGCAAGCAGT 61.312 50.000 17.22 1.01 0.00 4.40
261 262 0.179140 AAAACCACACGTGCAAGCAG 60.179 50.000 17.22 0.33 0.00 4.24
262 263 0.457509 CAAAACCACACGTGCAAGCA 60.458 50.000 17.22 0.00 0.00 3.91
263 264 1.145162 CCAAAACCACACGTGCAAGC 61.145 55.000 17.22 0.00 0.00 4.01
264 265 0.527385 CCCAAAACCACACGTGCAAG 60.527 55.000 17.22 7.01 0.00 4.01
265 266 1.251527 ACCCAAAACCACACGTGCAA 61.252 50.000 17.22 0.00 0.00 4.08
266 267 1.251527 AACCCAAAACCACACGTGCA 61.252 50.000 17.22 0.00 0.00 4.57
267 268 0.804156 CAACCCAAAACCACACGTGC 60.804 55.000 17.22 0.00 0.00 5.34
268 269 0.528470 ACAACCCAAAACCACACGTG 59.472 50.000 15.48 15.48 0.00 4.49
269 270 2.125773 TACAACCCAAAACCACACGT 57.874 45.000 0.00 0.00 0.00 4.49
270 271 2.619177 TGATACAACCCAAAACCACACG 59.381 45.455 0.00 0.00 0.00 4.49
271 272 3.243602 GGTGATACAACCCAAAACCACAC 60.244 47.826 0.00 0.00 33.79 3.82
272 273 2.959707 GGTGATACAACCCAAAACCACA 59.040 45.455 0.00 0.00 33.79 4.17
273 274 3.005367 CAGGTGATACAACCCAAAACCAC 59.995 47.826 0.00 0.00 41.54 4.16
274 275 3.226777 CAGGTGATACAACCCAAAACCA 58.773 45.455 0.00 0.00 41.54 3.67
275 276 3.227614 ACAGGTGATACAACCCAAAACC 58.772 45.455 0.00 0.00 41.54 3.27
276 277 4.583073 AGAACAGGTGATACAACCCAAAAC 59.417 41.667 0.00 0.00 41.54 2.43
277 278 4.798882 AGAACAGGTGATACAACCCAAAA 58.201 39.130 0.00 0.00 41.54 2.44
278 279 4.447138 AGAACAGGTGATACAACCCAAA 57.553 40.909 0.00 0.00 41.54 3.28
279 280 4.447138 AAGAACAGGTGATACAACCCAA 57.553 40.909 0.00 0.00 41.54 4.12
280 281 4.447138 AAAGAACAGGTGATACAACCCA 57.553 40.909 0.00 0.00 41.54 4.51
281 282 5.784578 AAAAAGAACAGGTGATACAACCC 57.215 39.130 0.00 0.00 41.54 4.11
282 283 7.749126 CGATTAAAAAGAACAGGTGATACAACC 59.251 37.037 0.00 0.00 40.85 3.77
283 284 8.500773 TCGATTAAAAAGAACAGGTGATACAAC 58.499 33.333 0.00 0.00 0.00 3.32
284 285 8.610248 TCGATTAAAAAGAACAGGTGATACAA 57.390 30.769 0.00 0.00 0.00 2.41
285 286 8.610248 TTCGATTAAAAAGAACAGGTGATACA 57.390 30.769 0.00 0.00 0.00 2.29
286 287 9.326339 GTTTCGATTAAAAAGAACAGGTGATAC 57.674 33.333 0.00 0.00 0.00 2.24
287 288 9.058174 TGTTTCGATTAAAAAGAACAGGTGATA 57.942 29.630 0.00 0.00 0.00 2.15
288 289 7.936584 TGTTTCGATTAAAAAGAACAGGTGAT 58.063 30.769 0.00 0.00 0.00 3.06
289 290 7.323049 TGTTTCGATTAAAAAGAACAGGTGA 57.677 32.000 0.00 0.00 0.00 4.02
290 291 7.305993 GCTTGTTTCGATTAAAAAGAACAGGTG 60.306 37.037 4.28 0.00 0.00 4.00
291 292 6.695713 GCTTGTTTCGATTAAAAAGAACAGGT 59.304 34.615 4.28 0.00 0.00 4.00
292 293 6.143919 GGCTTGTTTCGATTAAAAAGAACAGG 59.856 38.462 4.28 2.79 0.00 4.00
293 294 6.129457 CGGCTTGTTTCGATTAAAAAGAACAG 60.129 38.462 4.28 0.00 0.00 3.16
294 295 5.683743 CGGCTTGTTTCGATTAAAAAGAACA 59.316 36.000 4.28 0.00 0.00 3.18
295 296 5.116528 CCGGCTTGTTTCGATTAAAAAGAAC 59.883 40.000 4.28 0.00 0.00 3.01
296 297 5.216648 CCGGCTTGTTTCGATTAAAAAGAA 58.783 37.500 4.28 0.00 0.00 2.52
297 298 4.276431 ACCGGCTTGTTTCGATTAAAAAGA 59.724 37.500 0.00 0.00 0.00 2.52
298 299 4.542735 ACCGGCTTGTTTCGATTAAAAAG 58.457 39.130 0.00 0.00 0.00 2.27
299 300 4.571372 ACCGGCTTGTTTCGATTAAAAA 57.429 36.364 0.00 0.00 0.00 1.94
300 301 5.181622 ACATACCGGCTTGTTTCGATTAAAA 59.818 36.000 0.00 0.00 0.00 1.52
301 302 4.696402 ACATACCGGCTTGTTTCGATTAAA 59.304 37.500 0.00 0.00 0.00 1.52
302 303 4.255301 ACATACCGGCTTGTTTCGATTAA 58.745 39.130 0.00 0.00 0.00 1.40
303 304 3.864243 ACATACCGGCTTGTTTCGATTA 58.136 40.909 0.00 0.00 0.00 1.75
304 305 2.706890 ACATACCGGCTTGTTTCGATT 58.293 42.857 0.00 0.00 0.00 3.34
305 306 2.396590 ACATACCGGCTTGTTTCGAT 57.603 45.000 0.00 0.00 0.00 3.59
306 307 3.316071 TTACATACCGGCTTGTTTCGA 57.684 42.857 14.37 0.00 0.00 3.71
307 308 4.609691 AATTACATACCGGCTTGTTTCG 57.390 40.909 14.37 0.00 0.00 3.46
308 309 8.803799 CAATTTAATTACATACCGGCTTGTTTC 58.196 33.333 14.37 0.00 0.00 2.78
309 310 8.308207 ACAATTTAATTACATACCGGCTTGTTT 58.692 29.630 14.37 7.22 0.00 2.83
310 311 7.832769 ACAATTTAATTACATACCGGCTTGTT 58.167 30.769 14.37 0.99 0.00 2.83
311 312 7.399245 ACAATTTAATTACATACCGGCTTGT 57.601 32.000 13.73 13.73 0.00 3.16
312 313 6.631238 CGACAATTTAATTACATACCGGCTTG 59.369 38.462 0.00 1.04 0.00 4.01
313 314 6.539464 TCGACAATTTAATTACATACCGGCTT 59.461 34.615 0.00 0.00 0.00 4.35
314 315 6.050432 TCGACAATTTAATTACATACCGGCT 58.950 36.000 0.00 0.00 0.00 5.52
315 316 6.289745 TCGACAATTTAATTACATACCGGC 57.710 37.500 0.00 0.00 0.00 6.13
316 317 8.552865 TGATTCGACAATTTAATTACATACCGG 58.447 33.333 0.00 0.00 0.00 5.28
317 318 9.365311 GTGATTCGACAATTTAATTACATACCG 57.635 33.333 0.00 0.00 0.00 4.02
325 326 8.388103 CCGAGTTAGTGATTCGACAATTTAATT 58.612 33.333 1.19 0.00 39.59 1.40
326 327 7.011109 CCCGAGTTAGTGATTCGACAATTTAAT 59.989 37.037 1.19 0.00 39.59 1.40
327 328 6.311935 CCCGAGTTAGTGATTCGACAATTTAA 59.688 38.462 1.19 0.00 39.59 1.52
328 329 5.808540 CCCGAGTTAGTGATTCGACAATTTA 59.191 40.000 1.19 0.00 39.59 1.40
329 330 4.630069 CCCGAGTTAGTGATTCGACAATTT 59.370 41.667 1.19 0.00 39.59 1.82
330 331 4.181578 CCCGAGTTAGTGATTCGACAATT 58.818 43.478 1.19 0.00 39.59 2.32
331 332 3.782046 CCCGAGTTAGTGATTCGACAAT 58.218 45.455 1.19 0.00 39.59 2.71
332 333 2.673043 GCCCGAGTTAGTGATTCGACAA 60.673 50.000 1.19 0.00 39.59 3.18
333 334 1.135199 GCCCGAGTTAGTGATTCGACA 60.135 52.381 1.19 0.00 39.59 4.35
334 335 1.557651 GCCCGAGTTAGTGATTCGAC 58.442 55.000 1.19 0.00 39.59 4.20
335 336 0.458669 GGCCCGAGTTAGTGATTCGA 59.541 55.000 1.19 0.00 39.59 3.71
336 337 0.529992 GGGCCCGAGTTAGTGATTCG 60.530 60.000 5.69 0.00 37.25 3.34
337 338 0.539986 TGGGCCCGAGTTAGTGATTC 59.460 55.000 19.37 0.00 0.00 2.52
338 339 1.213296 ATGGGCCCGAGTTAGTGATT 58.787 50.000 19.37 0.00 0.00 2.57
339 340 1.134098 CAATGGGCCCGAGTTAGTGAT 60.134 52.381 19.37 0.00 0.00 3.06
340 341 0.251916 CAATGGGCCCGAGTTAGTGA 59.748 55.000 19.37 0.00 0.00 3.41
341 342 0.035439 ACAATGGGCCCGAGTTAGTG 60.035 55.000 19.37 11.38 0.00 2.74
342 343 0.252197 GACAATGGGCCCGAGTTAGT 59.748 55.000 19.37 9.63 0.00 2.24
343 344 0.810031 CGACAATGGGCCCGAGTTAG 60.810 60.000 19.37 9.77 0.00 2.34
344 345 1.219664 CGACAATGGGCCCGAGTTA 59.780 57.895 19.37 0.00 0.00 2.24
345 346 2.046314 CGACAATGGGCCCGAGTT 60.046 61.111 19.37 9.34 0.00 3.01
346 347 1.910580 ATTCGACAATGGGCCCGAGT 61.911 55.000 19.37 15.70 32.41 4.18
347 348 1.153168 ATTCGACAATGGGCCCGAG 60.153 57.895 19.37 12.10 32.41 4.63
348 349 1.153249 GATTCGACAATGGGCCCGA 60.153 57.895 19.37 6.33 0.00 5.14
349 350 2.186826 GGATTCGACAATGGGCCCG 61.187 63.158 19.37 5.25 0.00 6.13
350 351 0.472471 TAGGATTCGACAATGGGCCC 59.528 55.000 17.59 17.59 0.00 5.80
351 352 1.141053 AGTAGGATTCGACAATGGGCC 59.859 52.381 0.00 0.00 0.00 5.80
352 353 2.158957 TGAGTAGGATTCGACAATGGGC 60.159 50.000 0.00 0.00 0.00 5.36
353 354 3.722147 CTGAGTAGGATTCGACAATGGG 58.278 50.000 0.00 0.00 0.00 4.00
354 355 3.126831 GCTGAGTAGGATTCGACAATGG 58.873 50.000 0.00 0.00 0.00 3.16
355 356 3.785486 TGCTGAGTAGGATTCGACAATG 58.215 45.455 0.00 0.00 0.00 2.82
356 357 4.471904 TTGCTGAGTAGGATTCGACAAT 57.528 40.909 0.00 0.00 0.00 2.71
357 358 3.953712 TTGCTGAGTAGGATTCGACAA 57.046 42.857 0.00 0.00 0.00 3.18
358 359 4.183865 CAATTGCTGAGTAGGATTCGACA 58.816 43.478 0.00 0.00 0.00 4.35
359 360 4.184629 ACAATTGCTGAGTAGGATTCGAC 58.815 43.478 5.05 0.00 0.00 4.20
360 361 4.433615 GACAATTGCTGAGTAGGATTCGA 58.566 43.478 5.05 0.00 0.00 3.71
361 362 3.243877 CGACAATTGCTGAGTAGGATTCG 59.756 47.826 5.05 0.00 0.00 3.34
362 363 4.433615 TCGACAATTGCTGAGTAGGATTC 58.566 43.478 5.05 0.00 0.00 2.52
363 364 4.471904 TCGACAATTGCTGAGTAGGATT 57.528 40.909 5.05 0.00 0.00 3.01
364 365 4.471904 TTCGACAATTGCTGAGTAGGAT 57.528 40.909 5.05 0.00 0.00 3.24
365 366 3.953712 TTCGACAATTGCTGAGTAGGA 57.046 42.857 5.05 0.00 0.00 2.94
366 367 4.259970 CGAATTCGACAATTGCTGAGTAGG 60.260 45.833 23.29 0.00 43.02 3.18
367 368 4.562789 TCGAATTCGACAATTGCTGAGTAG 59.437 41.667 25.96 0.00 44.22 2.57
368 369 4.490743 TCGAATTCGACAATTGCTGAGTA 58.509 39.130 25.96 0.00 44.22 2.59
369 370 3.325870 TCGAATTCGACAATTGCTGAGT 58.674 40.909 25.96 0.00 44.22 3.41
370 371 3.997319 TCGAATTCGACAATTGCTGAG 57.003 42.857 25.96 0.00 44.22 3.35
381 382 0.524414 TTCGGCTGAGTCGAATTCGA 59.476 50.000 25.96 25.96 44.69 3.71
382 383 3.030209 TTCGGCTGAGTCGAATTCG 57.970 52.632 18.77 21.78 44.69 3.34
387 388 1.292223 CCCTTTTCGGCTGAGTCGA 59.708 57.895 4.48 4.48 38.09 4.20
388 389 1.741770 CCCCTTTTCGGCTGAGTCG 60.742 63.158 0.00 0.00 0.00 4.18
389 390 1.377333 CCCCCTTTTCGGCTGAGTC 60.377 63.158 0.00 0.00 0.00 3.36
390 391 0.838987 TACCCCCTTTTCGGCTGAGT 60.839 55.000 0.00 0.00 0.00 3.41
391 392 0.392595 GTACCCCCTTTTCGGCTGAG 60.393 60.000 0.00 0.00 0.00 3.35
392 393 0.838987 AGTACCCCCTTTTCGGCTGA 60.839 55.000 0.00 0.00 0.00 4.26
393 394 0.037734 AAGTACCCCCTTTTCGGCTG 59.962 55.000 0.00 0.00 0.00 4.85
394 395 1.280133 GTAAGTACCCCCTTTTCGGCT 59.720 52.381 0.00 0.00 0.00 5.52
395 396 1.742761 GTAAGTACCCCCTTTTCGGC 58.257 55.000 0.00 0.00 0.00 5.54
396 397 2.014335 CGTAAGTACCCCCTTTTCGG 57.986 55.000 0.00 0.00 0.00 4.30
415 416 1.741770 AGATTGGCTCGTTCCGCAC 60.742 57.895 0.00 0.00 0.00 5.34
416 417 1.741401 CAGATTGGCTCGTTCCGCA 60.741 57.895 0.00 0.00 0.00 5.69
417 418 2.464459 CCAGATTGGCTCGTTCCGC 61.464 63.158 0.00 0.00 0.00 5.54
418 419 1.079127 ACCAGATTGGCTCGTTCCG 60.079 57.895 0.00 0.00 42.67 4.30
419 420 0.250513 AGACCAGATTGGCTCGTTCC 59.749 55.000 0.00 0.00 42.67 3.62
420 421 2.100605 AAGACCAGATTGGCTCGTTC 57.899 50.000 0.00 0.00 42.67 3.95
421 422 2.154462 CAAAGACCAGATTGGCTCGTT 58.846 47.619 0.00 0.00 42.67 3.85
422 423 1.347707 TCAAAGACCAGATTGGCTCGT 59.652 47.619 0.00 0.00 42.67 4.18
423 424 2.099141 TCAAAGACCAGATTGGCTCG 57.901 50.000 0.00 0.00 42.67 5.03
424 425 7.807977 TTATTATCAAAGACCAGATTGGCTC 57.192 36.000 0.00 0.00 42.67 4.70
425 426 8.593945 TTTTATTATCAAAGACCAGATTGGCT 57.406 30.769 0.00 0.00 42.67 4.75
426 427 8.686334 TCTTTTATTATCAAAGACCAGATTGGC 58.314 33.333 0.00 0.00 35.71 4.52
438 439 9.477484 GCTCCGTCTATCTCTTTTATTATCAAA 57.523 33.333 0.00 0.00 0.00 2.69
439 440 8.861086 AGCTCCGTCTATCTCTTTTATTATCAA 58.139 33.333 0.00 0.00 0.00 2.57
440 441 8.300286 CAGCTCCGTCTATCTCTTTTATTATCA 58.700 37.037 0.00 0.00 0.00 2.15
441 442 7.757624 CCAGCTCCGTCTATCTCTTTTATTATC 59.242 40.741 0.00 0.00 0.00 1.75
442 443 7.233757 ACCAGCTCCGTCTATCTCTTTTATTAT 59.766 37.037 0.00 0.00 0.00 1.28
443 444 6.550108 ACCAGCTCCGTCTATCTCTTTTATTA 59.450 38.462 0.00 0.00 0.00 0.98
444 445 5.364157 ACCAGCTCCGTCTATCTCTTTTATT 59.636 40.000 0.00 0.00 0.00 1.40
445 446 4.896482 ACCAGCTCCGTCTATCTCTTTTAT 59.104 41.667 0.00 0.00 0.00 1.40
446 447 4.279145 ACCAGCTCCGTCTATCTCTTTTA 58.721 43.478 0.00 0.00 0.00 1.52
447 448 3.100671 ACCAGCTCCGTCTATCTCTTTT 58.899 45.455 0.00 0.00 0.00 2.27
448 449 2.741145 ACCAGCTCCGTCTATCTCTTT 58.259 47.619 0.00 0.00 0.00 2.52
449 450 2.445682 ACCAGCTCCGTCTATCTCTT 57.554 50.000 0.00 0.00 0.00 2.85
450 451 3.073209 TCATACCAGCTCCGTCTATCTCT 59.927 47.826 0.00 0.00 0.00 3.10
451 452 3.413327 TCATACCAGCTCCGTCTATCTC 58.587 50.000 0.00 0.00 0.00 2.75
452 453 3.510531 TCATACCAGCTCCGTCTATCT 57.489 47.619 0.00 0.00 0.00 1.98
453 454 4.585955 TTTCATACCAGCTCCGTCTATC 57.414 45.455 0.00 0.00 0.00 2.08
454 455 4.588951 TGATTTCATACCAGCTCCGTCTAT 59.411 41.667 0.00 0.00 0.00 1.98
455 456 3.958147 TGATTTCATACCAGCTCCGTCTA 59.042 43.478 0.00 0.00 0.00 2.59
456 457 2.766263 TGATTTCATACCAGCTCCGTCT 59.234 45.455 0.00 0.00 0.00 4.18
457 458 3.126831 CTGATTTCATACCAGCTCCGTC 58.873 50.000 0.00 0.00 0.00 4.79
458 459 2.766263 TCTGATTTCATACCAGCTCCGT 59.234 45.455 0.00 0.00 0.00 4.69
459 460 3.126831 GTCTGATTTCATACCAGCTCCG 58.873 50.000 0.00 0.00 0.00 4.63
460 461 3.126831 CGTCTGATTTCATACCAGCTCC 58.873 50.000 0.00 0.00 0.00 4.70
461 462 2.541762 GCGTCTGATTTCATACCAGCTC 59.458 50.000 0.00 0.00 0.00 4.09
462 463 2.093500 TGCGTCTGATTTCATACCAGCT 60.093 45.455 0.00 0.00 0.00 4.24
463 464 2.279741 TGCGTCTGATTTCATACCAGC 58.720 47.619 0.00 0.00 0.00 4.85
464 465 4.944962 TTTGCGTCTGATTTCATACCAG 57.055 40.909 0.00 0.00 0.00 4.00
465 466 5.697473 TTTTTGCGTCTGATTTCATACCA 57.303 34.783 0.00 0.00 0.00 3.25
485 486 8.682710 GGCTTGGTTTTTATTTTCTTTCCTTTT 58.317 29.630 0.00 0.00 0.00 2.27
486 487 7.011950 CGGCTTGGTTTTTATTTTCTTTCCTTT 59.988 33.333 0.00 0.00 0.00 3.11
487 488 6.481976 CGGCTTGGTTTTTATTTTCTTTCCTT 59.518 34.615 0.00 0.00 0.00 3.36
488 489 5.989168 CGGCTTGGTTTTTATTTTCTTTCCT 59.011 36.000 0.00 0.00 0.00 3.36
489 490 5.178623 CCGGCTTGGTTTTTATTTTCTTTCC 59.821 40.000 0.00 0.00 0.00 3.13
490 491 6.223138 CCGGCTTGGTTTTTATTTTCTTTC 57.777 37.500 0.00 0.00 0.00 2.62
505 506 1.553704 GGGTAGGATATACCGGCTTGG 59.446 57.143 0.00 0.00 44.74 3.61
506 507 1.203994 CGGGTAGGATATACCGGCTTG 59.796 57.143 0.00 0.00 44.74 4.01
507 508 1.553706 CGGGTAGGATATACCGGCTT 58.446 55.000 0.00 0.00 44.74 4.35
508 509 3.277962 CGGGTAGGATATACCGGCT 57.722 57.895 0.00 0.00 44.74 5.52
511 512 1.660560 CGGCCGGGTAGGATATACCG 61.661 65.000 20.10 0.00 45.00 4.02
512 513 1.953231 GCGGCCGGGTAGGATATACC 61.953 65.000 29.38 0.17 45.00 2.73
513 514 1.252904 TGCGGCCGGGTAGGATATAC 61.253 60.000 29.38 5.58 45.00 1.47
514 515 0.968901 CTGCGGCCGGGTAGGATATA 60.969 60.000 29.38 0.00 45.00 0.86
515 516 2.203728 TGCGGCCGGGTAGGATAT 60.204 61.111 29.38 0.00 45.00 1.63
516 517 2.915659 CTGCGGCCGGGTAGGATA 60.916 66.667 29.38 0.00 45.00 2.59
525 526 4.688419 CTGTTGCAACTGCGGCCG 62.688 66.667 28.61 24.05 45.83 6.13
531 532 0.872881 GCTGTTGGCTGTTGCAACTG 60.873 55.000 28.61 27.65 41.91 3.16
532 533 1.438814 GCTGTTGGCTGTTGCAACT 59.561 52.632 28.61 0.00 41.91 3.16
533 534 4.017092 GCTGTTGGCTGTTGCAAC 57.983 55.556 22.83 22.83 41.91 4.17
543 544 3.052082 CACTCCGGCAGCTGTTGG 61.052 66.667 16.64 17.06 0.00 3.77
544 545 2.281070 ACACTCCGGCAGCTGTTG 60.281 61.111 16.64 7.98 0.00 3.33
545 546 2.281070 CACACTCCGGCAGCTGTT 60.281 61.111 16.64 0.00 0.00 3.16
546 547 4.996434 GCACACTCCGGCAGCTGT 62.996 66.667 16.64 0.50 0.00 4.40
547 548 4.994471 TGCACACTCCGGCAGCTG 62.994 66.667 10.11 10.11 34.58 4.24
548 549 3.965539 GATGCACACTCCGGCAGCT 62.966 63.158 0.00 0.00 44.24 4.24
549 550 3.503363 GATGCACACTCCGGCAGC 61.503 66.667 0.00 0.00 44.24 5.25
550 551 3.190849 CGATGCACACTCCGGCAG 61.191 66.667 0.00 0.00 44.24 4.85
551 552 3.932580 GACGATGCACACTCCGGCA 62.933 63.158 0.00 0.00 45.23 5.69
552 553 3.188786 GACGATGCACACTCCGGC 61.189 66.667 0.00 0.00 0.00 6.13
553 554 2.880879 CGACGATGCACACTCCGG 60.881 66.667 0.00 0.00 0.00 5.14
554 555 2.126463 ACGACGATGCACACTCCG 60.126 61.111 0.00 0.00 0.00 4.63
555 556 2.152699 CGACGACGATGCACACTCC 61.153 63.158 0.00 0.00 42.66 3.85
556 557 2.778997 GCGACGACGATGCACACTC 61.779 63.158 12.29 0.00 42.66 3.51
557 558 2.805353 GCGACGACGATGCACACT 60.805 61.111 12.29 0.00 42.66 3.55
558 559 3.838795 GGCGACGACGATGCACAC 61.839 66.667 12.29 0.00 42.66 3.82
559 560 4.350441 TGGCGACGACGATGCACA 62.350 61.111 12.29 9.57 42.66 4.57
560 561 3.545481 CTGGCGACGACGATGCAC 61.545 66.667 12.29 7.61 42.66 4.57
561 562 3.567478 AACTGGCGACGACGATGCA 62.567 57.895 12.29 0.00 42.66 3.96
562 563 2.809601 AACTGGCGACGACGATGC 60.810 61.111 12.29 4.54 42.66 3.91
563 564 0.802222 ATCAACTGGCGACGACGATG 60.802 55.000 12.29 2.40 42.66 3.84
564 565 0.802222 CATCAACTGGCGACGACGAT 60.802 55.000 12.29 0.00 42.66 3.73
565 566 1.443702 CATCAACTGGCGACGACGA 60.444 57.895 12.29 0.00 42.66 4.20
566 567 1.443702 TCATCAACTGGCGACGACG 60.444 57.895 2.12 2.12 42.93 5.12
567 568 0.666274 TGTCATCAACTGGCGACGAC 60.666 55.000 0.00 0.00 29.52 4.34
568 569 0.666274 GTGTCATCAACTGGCGACGA 60.666 55.000 0.00 0.00 29.52 4.20
569 570 1.781555 GTGTCATCAACTGGCGACG 59.218 57.895 0.00 0.00 29.52 5.12
570 571 0.666274 TCGTGTCATCAACTGGCGAC 60.666 55.000 0.00 0.00 29.52 5.19
571 572 0.032815 TTCGTGTCATCAACTGGCGA 59.967 50.000 0.00 0.00 29.52 5.54
572 573 0.439985 CTTCGTGTCATCAACTGGCG 59.560 55.000 0.00 0.00 29.52 5.69
573 574 0.166814 GCTTCGTGTCATCAACTGGC 59.833 55.000 0.00 0.00 0.00 4.85
574 575 1.462283 CTGCTTCGTGTCATCAACTGG 59.538 52.381 0.00 0.00 0.00 4.00
575 576 1.136141 GCTGCTTCGTGTCATCAACTG 60.136 52.381 0.00 0.00 0.00 3.16
576 577 1.151668 GCTGCTTCGTGTCATCAACT 58.848 50.000 0.00 0.00 0.00 3.16
577 578 0.166814 GGCTGCTTCGTGTCATCAAC 59.833 55.000 0.00 0.00 0.00 3.18
578 579 0.955428 GGGCTGCTTCGTGTCATCAA 60.955 55.000 0.00 0.00 0.00 2.57
579 580 1.375908 GGGCTGCTTCGTGTCATCA 60.376 57.895 0.00 0.00 0.00 3.07
580 581 0.674895 AAGGGCTGCTTCGTGTCATC 60.675 55.000 0.00 0.00 0.00 2.92
581 582 0.613260 TAAGGGCTGCTTCGTGTCAT 59.387 50.000 0.00 0.00 0.00 3.06
582 583 0.613260 ATAAGGGCTGCTTCGTGTCA 59.387 50.000 0.00 0.00 0.00 3.58
583 584 1.739067 AATAAGGGCTGCTTCGTGTC 58.261 50.000 0.00 0.00 0.00 3.67
584 585 3.270877 CTTAATAAGGGCTGCTTCGTGT 58.729 45.455 0.00 0.00 0.00 4.49
585 586 2.032178 GCTTAATAAGGGCTGCTTCGTG 59.968 50.000 1.88 0.00 0.00 4.35
586 587 2.289565 GCTTAATAAGGGCTGCTTCGT 58.710 47.619 1.88 0.00 0.00 3.85
587 588 1.604278 GGCTTAATAAGGGCTGCTTCG 59.396 52.381 1.88 0.00 0.00 3.79
588 589 1.957177 GGGCTTAATAAGGGCTGCTTC 59.043 52.381 1.88 0.00 0.00 3.86
589 590 1.570979 AGGGCTTAATAAGGGCTGCTT 59.429 47.619 1.88 0.00 0.00 3.91
590 591 1.133668 CAGGGCTTAATAAGGGCTGCT 60.134 52.381 1.88 0.00 0.00 4.24
591 592 1.322442 CAGGGCTTAATAAGGGCTGC 58.678 55.000 1.88 0.00 0.00 5.25
685 686 3.876589 GAAGGAACCGTCGGCTGCA 62.877 63.158 12.28 0.00 0.00 4.41
722 728 0.532640 TCGATCAATGGCGATGGTGG 60.533 55.000 0.00 0.00 0.00 4.61
807 818 2.011741 TTCGATCGTCGGGATGGGTG 62.012 60.000 15.94 0.00 40.88 4.61
910 921 2.722201 GGCCGTCGGACCTTGAGAT 61.722 63.158 17.49 0.00 0.00 2.75
1554 1575 1.225854 GATCGAGCAAGCGTTGTGC 60.226 57.895 0.00 0.00 46.98 4.57
1555 1576 0.723414 ATGATCGAGCAAGCGTTGTG 59.277 50.000 7.76 0.00 0.00 3.33
1556 1577 2.293677 TATGATCGAGCAAGCGTTGT 57.706 45.000 7.76 0.00 0.00 3.32
1557 1578 2.541346 ACATATGATCGAGCAAGCGTTG 59.459 45.455 7.76 3.90 0.00 4.10
1558 1579 2.541346 CACATATGATCGAGCAAGCGTT 59.459 45.455 7.76 0.00 0.00 4.84
1559 1580 2.130395 CACATATGATCGAGCAAGCGT 58.870 47.619 7.76 1.51 0.00 5.07
1560 1581 1.136419 GCACATATGATCGAGCAAGCG 60.136 52.381 7.76 0.79 0.00 4.68
1562 1583 3.129109 ACTGCACATATGATCGAGCAAG 58.871 45.455 7.76 0.39 0.00 4.01
1563 1584 3.126073 GACTGCACATATGATCGAGCAA 58.874 45.455 7.76 0.00 0.00 3.91
1565 1586 2.730404 CAGACTGCACATATGATCGAGC 59.270 50.000 10.38 0.00 0.00 5.03
1566 1587 4.234530 TCAGACTGCACATATGATCGAG 57.765 45.455 10.38 2.31 0.00 4.04
1698 1722 2.730094 CGGTTTGCTGCTTGCCTT 59.270 55.556 0.00 0.00 42.00 4.35
1699 1723 3.297620 CCGGTTTGCTGCTTGCCT 61.298 61.111 0.00 0.00 42.00 4.75
1804 1828 0.327259 GTCCCTCCTAGCCGGTTTTT 59.673 55.000 1.90 0.00 0.00 1.94
1823 1847 2.579787 GTCCGGACACGATGAGCG 60.580 66.667 29.75 0.00 44.60 5.03
1864 1888 4.179579 GCCGCCATTTCCGACTGC 62.180 66.667 0.00 0.00 0.00 4.40
1871 1895 1.372087 CTGTCTCTGGCCGCCATTTC 61.372 60.000 13.86 4.93 30.82 2.17
1902 1926 6.868864 TCCTTCGAATCGATCCATAATTTCTC 59.131 38.462 6.06 0.00 35.23 2.87
2053 2079 7.997482 AGAAGATCTGAAATGTCAAATGGATG 58.003 34.615 0.00 0.00 31.88 3.51
2097 2123 9.758651 ACCTTACATGAATTTAACCTGTTTTTC 57.241 29.630 0.00 0.00 0.00 2.29
2156 2182 4.711846 GGAAGGGGTTTCTTTTGCATAGAT 59.288 41.667 0.00 0.00 36.03 1.98
2176 2202 2.156098 GCTGGTTTCCGTATTGTGGAA 58.844 47.619 0.00 0.00 43.59 3.53
2178 2204 1.199097 GTGCTGGTTTCCGTATTGTGG 59.801 52.381 0.00 0.00 0.00 4.17
2198 2224 7.340699 GTGACGAATCTGATACTAGCATTTTG 58.659 38.462 0.00 0.00 0.00 2.44
2238 2265 5.472137 TGAAGGAGGTTAAGATTGTTTTCCG 59.528 40.000 0.00 0.00 0.00 4.30
2239 2266 6.570571 GCTGAAGGAGGTTAAGATTGTTTTCC 60.571 42.308 0.00 0.00 0.00 3.13
2242 2269 5.385198 TGCTGAAGGAGGTTAAGATTGTTT 58.615 37.500 0.00 0.00 0.00 2.83
2243 2270 4.985538 TGCTGAAGGAGGTTAAGATTGTT 58.014 39.130 0.00 0.00 0.00 2.83
2244 2271 4.640771 TGCTGAAGGAGGTTAAGATTGT 57.359 40.909 0.00 0.00 0.00 2.71
2245 2272 5.006386 ACTTGCTGAAGGAGGTTAAGATTG 58.994 41.667 0.00 0.00 32.95 2.67
2246 2273 5.248380 ACTTGCTGAAGGAGGTTAAGATT 57.752 39.130 0.00 0.00 32.95 2.40
2247 2274 4.917906 ACTTGCTGAAGGAGGTTAAGAT 57.082 40.909 0.00 0.00 32.95 2.40
2248 2275 4.642429 GAACTTGCTGAAGGAGGTTAAGA 58.358 43.478 0.00 0.00 35.96 2.10
2249 2276 3.433615 CGAACTTGCTGAAGGAGGTTAAG 59.566 47.826 0.00 0.00 35.96 1.85
2250 2277 3.181458 ACGAACTTGCTGAAGGAGGTTAA 60.181 43.478 0.00 0.00 35.96 2.01
2251 2278 2.367567 ACGAACTTGCTGAAGGAGGTTA 59.632 45.455 0.00 0.00 35.96 2.85
2252 2279 1.141053 ACGAACTTGCTGAAGGAGGTT 59.859 47.619 0.00 0.00 38.30 3.50
2253 2280 0.759346 ACGAACTTGCTGAAGGAGGT 59.241 50.000 0.00 0.00 32.95 3.85
2254 2281 1.151668 CACGAACTTGCTGAAGGAGG 58.848 55.000 0.00 0.00 32.95 4.30
2255 2282 1.528586 CACACGAACTTGCTGAAGGAG 59.471 52.381 0.00 0.00 32.95 3.69
2256 2283 1.581934 CACACGAACTTGCTGAAGGA 58.418 50.000 0.00 0.00 32.95 3.36
2257 2284 0.588252 CCACACGAACTTGCTGAAGG 59.412 55.000 0.00 0.00 32.95 3.46
2258 2285 1.581934 TCCACACGAACTTGCTGAAG 58.418 50.000 0.00 0.00 35.07 3.02
2259 2286 2.031258 TTCCACACGAACTTGCTGAA 57.969 45.000 0.00 0.00 0.00 3.02
2260 2287 2.031258 TTTCCACACGAACTTGCTGA 57.969 45.000 0.00 0.00 0.00 4.26
2261 2288 3.249799 TGTATTTCCACACGAACTTGCTG 59.750 43.478 0.00 0.00 0.00 4.41
2262 2289 3.472652 TGTATTTCCACACGAACTTGCT 58.527 40.909 0.00 0.00 0.00 3.91
2263 2290 3.889196 TGTATTTCCACACGAACTTGC 57.111 42.857 0.00 0.00 0.00 4.01
2264 2291 4.024048 AGCTTGTATTTCCACACGAACTTG 60.024 41.667 0.00 0.00 0.00 3.16
2265 2292 4.134563 AGCTTGTATTTCCACACGAACTT 58.865 39.130 0.00 0.00 0.00 2.66
2266 2293 3.740115 AGCTTGTATTTCCACACGAACT 58.260 40.909 0.00 0.00 0.00 3.01
2267 2294 4.927425 TCTAGCTTGTATTTCCACACGAAC 59.073 41.667 0.00 0.00 0.00 3.95
2268 2295 5.142061 TCTAGCTTGTATTTCCACACGAA 57.858 39.130 0.00 0.00 0.00 3.85
2269 2296 4.794278 TCTAGCTTGTATTTCCACACGA 57.206 40.909 0.00 0.00 0.00 4.35
2270 2297 5.727791 GCAATCTAGCTTGTATTTCCACACG 60.728 44.000 8.05 0.00 0.00 4.49
2271 2298 5.123820 TGCAATCTAGCTTGTATTTCCACAC 59.876 40.000 8.05 0.00 34.99 3.82
2274 2301 5.355071 CACTGCAATCTAGCTTGTATTTCCA 59.645 40.000 8.05 0.00 34.99 3.53
2286 2313 5.220359 CGTCATTTCAGTCACTGCAATCTAG 60.220 44.000 0.00 0.00 25.88 2.43
2304 2331 2.627945 TGCTCCTTTATTCGCGTCATT 58.372 42.857 5.77 0.00 0.00 2.57
2309 2336 6.655062 TGTATAAATTGCTCCTTTATTCGCG 58.345 36.000 0.00 0.00 32.51 5.87
2375 2402 3.245087 TGTTGTAAAGGGCCAAGCAGATA 60.245 43.478 6.18 0.00 0.00 1.98
2430 2457 3.444388 CCAGTAGTGAGTCACCCTAGTTC 59.556 52.174 19.71 0.00 34.49 3.01
2479 2506 1.901591 CCATTGAAGGTGTGCAGAGT 58.098 50.000 0.00 0.00 0.00 3.24
2560 2587 0.792640 GCATCATCTTATCGCACCCG 59.207 55.000 0.00 0.00 0.00 5.28
2623 2650 2.034812 CCAGTACGAGGGCTACATTCTC 59.965 54.545 0.00 0.00 0.00 2.87
2674 2701 2.487762 CTGCCCACAAAACGTGTATGAT 59.512 45.455 0.00 0.00 44.78 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.