>input_sequence_69193
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ATGGCGTTGGGACTCCGGGAAGGCGGCGCC
GGCGAGCTGCAGGGCAAGGAGGGTAGCGGTGAGGCCACGGCGGCGGCTCCGGCGTACCGCTACGCCGCGACCGACTCGTT
CGCCTACGATGACATGCCGCCGCTGCCGCAGCAGATGGACCGGCAGCCGTCCGTGGTGCTCGGCGGGGAGGGGATGCTCG
GCGACGGCCGGATCCCGGCGTCCGTGTTCGAGCGGGACACGTCGGAGACCGGCAGGGACTGGAGCATGATGTCCACCGAG
TCGGTGTTCGGGCTCCAGGTCGCGCCCTCCTGCGACTTCACCGGCTACTTCCTCTCGCACCCGGAGCTCATGGACATAGC
CACGCCGCCCCGCGACAGCTCCGCCGACGTCGCCCGCCCCTCCGCCACGTCCACGCCGCGGCAGTTCAACGCCGTCCCGG
AGCTCGGCGACGCCGCCCCGAGCTACTCCTTCGCCTTCCCCAAGTACGCCACGCCTTTGGTCACTTCTTTGTTCTTTCGC
ATTACA---TGCACGTTCGT------TCGGTAA-AATTCCGAGCTAATGCACAAGCACAACGCTTGCTCGATCATATGTG
CAGTCTGATGGAGGACAGGAGGTACAGCTCCAAGAAATCTCGGCAATCTATCGACATGCCGCCGACGCCGAGAACGGCAG
AGTCGGGGGAGCCGGCAGCGGAGACGACGGCGCCGG---AGAAGGCAAGCAGCAAACCGGAAGCGGAGCCGGAAGCGCCG
AAGGGCGGCATGTTCTCGTGGATGCCCTGCTGCTCTTGA-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>chr7D_1_TraesCS7D01G097700
TTGACAAAAAATGCAATAAAAACCAAAAGAACAAATAAAATTGAAAAAGAAACAAAATGCAAAAAGGAATAAAAAAGCAA
GAAGAAAAAAGAAAATAAAATAAAAGAAAACGAAAATAAGAAGAAAAAACGGAGAAAACTGGCTGGAATCGTCTCAAGTA
GGACGCGCCCCTACTAGTTACCACCAACGGGACTTGGGCGGAGTGCTCTATTTATTACTTTAACTGTGGCGCGCGAATGT
GCTTATTGCGAGTGGCTGCAACTGCTTGCACGTGTGGTTTTGGGTTGTATCACCTGTTCTTTTTAATCGAAACAAGCCGG
TATGTAATTAAATTGTCGAATCACTAACTCGGGCCCATTGTCGAATCCTACTCAGCAATTGTCGAATTCGACTCAGCCGA
AAAGGGGGTACTTACGTGCGGAACGAGCCAATCTGGTCTTTGATAATAAAAGAGATAGACGGAGCTGGTATGAAATCAGA
CGCAAAAAAGGAAAGAAAATAAAAACCAAGCCGGTATATCCTACCCGGCCGCAGTTGCAACAGCCAACAGCTGCCGGAGT
GTGCATCGTCGTCGCCAGTTGATGACACGAAGCAGCCCTTATTAAGCCCTGCTCCAAATTTGGCGCCAAGCCTACCCAAA
CTTAGCGACCACAAACTCATCTTCTATTTTACGTCCCGCTCGCGGTGCAGCCGACGG-----TTCCTTCCATCCCACAAA
ACCCCCGCCACCATCGCCATTGATCGACCGCCTCCTCCGACCCACAACACCATTAACCCGAAACGGAGGGGGCGCTGCCC
ATCGCCGCTAT-----CCACCCATCCCGACGATCGAACGGCGCCACGCACGGCGGCGACGGTCACATTGCACATTGCACG
CTCCGCCCACGCCGAGGGAGGCCATCCATCGGCCTAGCATATCTCAAGGTCCGACGGCCGCGGTCCCAGCCCCGGCCGTC
GGTGCGCATTCGCCTCCGTTCTTGGAGAAGCTAGCTAGCGGCGAGCGAGCATGGCGTTGGGACTCCGGGAAGGCGGCGCC
GGCGAGCTGCAGGGCAAGGAGGGTAGCGGTGAGGCCACGGCGGCGGCTCCGGCGTACCGCTACGCCGCGACCGACTCGTT
CGCCTACGATGACATGCCGCCGCTGCCGCAGCAGATGGACCGGCAGCCGTCCGTGGTGCTCGGCGGGGAGGGGATGCTCG
GCGACGGCCGGATCCCGGCGTCCGTGTTCGAGCGGGACACGTCGGAGACCGGCAGGGACTGGAGCATGATGTCCACCGAG
TCGGTGTTCGGGCTCCAGGTCGCGCCCTCCTGCGACTTCACCGGCTACTTCCTCTCGCACCCGGAGCTCATGGACATAGC
CACGCCGCCCCGCGACAGCTCCGCCGACGTCGCCCGCCCCTCCGCCACGTCCACGCCGCGGCAGTTCAACGCCGTCCCGG
AGCTCGGCGACGCCGCCCCGAGCTACTCCTTCGCCTTCCCCAAGTACGCCACGCCTTTGGTCACTTCTTTGTTCTTTCGC
ATTACA---TGCACGTTCGT------TCGGTAA-AATTCCGAGCTAATGCACAAGCACAACGCTTGCTCGATCATATGTG
CAGTCTGATGGAGGACAGGAGGTACAGCTCCAAGAAATCTCGGCAATCTATCGACATGCCGCCGACGCCGAGAACGGCAG
AGTCGGGGGAGCCGGCAGCGGAGACGACGGCGCCGG---AGAAGGCAAGCAGCAAACCGGAAGCGGAGCCGGAAGCGCCG
AAGGGCGGCATGTTCTCGTGGATGCCCTGCTGCTCTTGATAAACACCGTCAATGGATCGCCGGCGGCAAAAACCGGCTAG
GAGGGACGCTCATCGTGTCCGGACCGTCACCGGCAACATTAGCTCGAGCAGTCGGAAATGGCGGCCAGAGACAGGAAAAG
GAAGTGAGAAATTATGGATCGATTCGAAGGACAAAAAACACAATCAAAACCAGCTTTTAAAT-TTTTCTTTGCCCCAGAG
TGGTGTCTTGTAATAGATTGCTTCCCTTTTTGGTCACAAATGTCGTCCACAACGATGAATTT-GAGATTTCTGTGAATCA
TCCATTTGACATTTCAGATCTTCTGAATGTATATAACCAGAGGAAAAACAGGTTAAATTCATGTAAGGTACTGTATCTAC
CTAACTAGATGCATGACATTTATCTATGCAAAAGAAACCCCTTCCACAATACGGAAACCAGCAC-AAAATGCTAGTATCA
GATTCGTCACCGGTTCACGACACCCGGAAAACAATCTTAACCTCCTTCAGCAAGTTCGTGTGGAAATACAAGCTAGATTG
CAGTGACTGAAATGACGCGAATAAAGGAGCAATTTATACAAGTTCAATGCCAACCCAAGCTCTCCACAGCAGTAAAAGTG
TTATCTGCTTGGCCCTTTACAACACACAGAACAGGCTTCATGGACACATACCATTGGAACTAGGGTGACTCACTACTGGC
TGCTGGAGACCGGAGCGCCATCTTCACTCTGCACACCTTCAATGGCCAGAATTTTCTTAACAACTTGCTTGGGTATATCA
AGGTCATCCTGCATGCAGCGTAGCAACGGGTGCGATAAGATGATGCATATCTGGCGGAACAGGACCCGAGCAAGCCCTTG
GCCGCTCTCGAGAATGTAGCCCTCGTACTGGCTGACATGCTCAAGGGCATCAACCAGCGCATCATACACGTTTTGTGGGC
AGTTATCAGCAGTAGGCTTGTCGTGCAGATAGACTATGTCCATGGTGAAGTTCTTTGGCTTTACGGGCCACTGATGGTGG
GG
>chr4A_593
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------CAGCCCTTATTAAGCCCTGCTCCAAATTTGGCGCCAAGCCTACCTTAA
CTTAGCAACCACAAACTCATCTTCTATTT-ACGCTCCGCTCGCCGCGCAGCCGACGGTTCCCTTCCTTCCATCCCACAAA
ACCCCCGGCACCATCGCCATTGATCGACCGCCTCCTCCGACCCACCACACCATTAACCTGAAACGGAGGGGGCGCTGCCC
ATCGCCGCTAT-----C-ACCCATCCCGACGATCGAACGGCGCCACGTACGGCGGCGACGGTCACATTGCACATTGCACG
CTCCGCCCACGCCGAGGGAGGTCATCCATCGGCCTAGCATCTCCTAAGGTCCGACGGCCGCGGTCCCAGCCCCGGCCGTC
GGTGCGCATTCGCCTCCGTTCTTGGATAAGCTAGCTAGCGGCGAGCGAGCATGGCGTTGGGACTCCGGGAAGGCGGCGCC
GGCGAGCTGCAGGGCAAGGAGGGCAGCGGTGAGGCCACGGCGGCGGCTCCGGCGTACCGCTACGCCGCGAGCGACTCGTT
CGCCTACGACGACATGCCGCCGCTGCCGCAGCAGATGGACCGGCAGCCGCCCCTGGTGCTCGGCGGGGAGGGGATGCTCG
GCGACGGCCGGATCCCGGCGTCCGTGTTCGAGCGGGACACGTCGGATCCCGGCAAGGACTGGAGCATGATGTCCACCGAG
TCGGTGTTCGGGCTCCAGGTCGCGCCCTCCTGCGACTTCACCGGCTACTTCCTCTCGCACCCGGAGCTCATGGACATCGC
CACGCCGCCCCGCGACAGCTCCGCCGACGTCTCCCGCCCCTCCGCCACGTCCACGCCGCGGCAGTTCAATGCCGTCCCGG
AGCTCGGCGACGCCGCCCCGAGCTACTCCTTCGCCTTCCCCAAGTACGCCACGCATTCGGTCGCGTCTTTTGCATTGTAC
---ACA---TGCACGTCCATGTCCATCCGTCCGTAATTCCTCACTGATGCACAACACTTGTGAATTGTGAC----ATGTG
CAGCCTGATGGAGGACAGGAGGTACAGCTCCAAGAGAGCTCAGGAATCTAGCGAGATGCCGGCGACGCCGAGAACGGCGC
GGGCGGGGGAGCCGGCTGCGGAGACGACGGCGCTGGGGGAGGGGGCAAGCAGCAAACCGGAAGCGGAGCCGGAAGCGCCG
AAGGGAGGCATGTTCTCGTGGTTGCCCTGCTGCTCTTGATAAACAACGTCAATGGATCGCCGGCGGC---AACCGGCTAG
GAGGGGTGCTCATCTTGTCGGCCCCGTCACCGGCGACGCCAGCTCGAACAGTCGAAAATGGTGGCCAGAGACAGGAAAAG
GAAGTAAGAAATTATGGATCGATTCGAAGGACAAAAAACACAATCAAAAGCAGTTTTTAAAA-TTTTCTTTGCCCCAGAG
TGGTGTCTTGTAATAGATTGCTTCCCTTTTTGGTCACAAATGTCGTCCACAACGATGAATTTTGAGATTTCTGTGAATTA
TCCATTCAACATTTCAGATCTTCTGAATGTATATAACCAGAGAAAAAACAGGTTAAATTCATGTAAGGTGCTGTAACTAC
CTAACTAGATGCATGACATTTCTCTATGCAAAAGAAACCCCCTGCACAATACAGAAACCAGC-AAAAAATGCTAGTATCA
GATTCGTCACCGGTTCACGACAC-----------------------------------TGCGGAAATACAAGGTAGATTG
CAGTTACTGATATGATGCAAATAAAGGAGCAATTTATACATGTTCAATGCCAACCCAATCTCTCCACAGCAGTAAAAGTG
T-ATCTGCTTGGCCCTTTACAACACACAGAACAGGCTTCATGAACACATACCATTG-AACTAGGGTGATTCACTACTGGC
TGCCGGAGGCCGGAGCGCCATCTTCGCTCTGCACACCTTCAATGGCCAGAATTTTCTTAACAACTTGCTTGGGTATATCA
AGGTCATCTTGCATGCAGCGTAGCAAGGGGTGTGATAAGATGATGCATATCTGGCGGAACAGGACCCGGGCAAGCCCTTG
GCCGCTCTCAAGAATGTAGCCCTCGTACTGGCTGACATGCTCGAGGGCATCAACCAGCGCGTCATACACATTTTGTGGGC
AGTTATCAGCAGTAGGCTTGTCGTGCAGATAGACTATGTCCATGGTGAAGTTCTTTGGCTTTACGGGCCACAGATGGTGG
GG
>chr7A_625
GCA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AAGCCTACCCAAA
CTTAGCGACCACAAACTCACCTTCTATTTACGTCCTTCCATC--------------------------CCATCCCACAAA
ACCCCCGGCACCATCGCCATTGATCGACCGCCTCCTCCGACCCACAACACCATTAACCCGAAACGGAGGGGGCGCTGCCC
GTCGCCGCTACCCACCC-ACCCATCCCGACGACCGAA---------------CGGCGACGGTCACATTGCACATTGCACG
CTCCGCCCACGCCGAGGGAGGCCATCCATCGGCCTAGCATCTCTCAAGGTCCGACGGCCGCGGTCCCAGCCCCAGCCGTC
GGTGCGCGTTTGCCCCCGTTCGTGGAGAGGCTAGCTAGCGGCGAGCGAGCATGGCGTTGGGACTCCGGGAAGGCGGCGCC
GGCGAGCTGCAGGGCAAGGAGGGCAGCGGTGAGGCCACGGCGGCGGCTCCGGCGTACCGCTACGCCGCGACCGACTCGTT
CGCGTACGACGACATGCCGCCGCTGCCGCAGCTGATGGACCGGCAGCCGCCCGTGGTGCTCGGCGGGGAGGGGATGCTCG
GCGACGGCCGGATCCCGGCGTCCGTGTTCGAGCGGGACACGTCGGAGCCCGGCAGGGACTGGAGCATGATGTCCACCGAG
TCGGTGTTCGGGCTCCAGGTCGCGCCCTCCTGCGACTTCACCGGCTACTTCCTCTCGCACCCGGAGCTCATGGACATCGC
CACGCCGCCCCGCGGCAG---------------------CTCCGCCACGTCCACGCCGCGCCAGTTCAACGCCGTCCCGG
AGCTCGGCGACGCCGCCCCGAGCTACTCCTTCGCCTTCCCCAAGTACGCCACGCCTTTGGTCACTTCTTTGTTCTTTCGC
ATTACATCATGCACGTTCTTCGTTCGTCGGTAA-AATTCCGAGCT-----------------------CGATCATATGTG
CAGTCTGATGGAGGACAAGAGGTACAGCTCCAAGAGAGCTCGGCAATCTATCGACATGCCGCCGACGCCGAGAACGGC--
-------GGAGCCGGCAGCGGAGACGCCGGCGCCGG---AGGGGGCAAGCAGCAAACCGGAAGCGGAGCCGGAAGCGCCC
AAGGGCGGCATGTTCTCGTGGATGCCCTGCTGCTCTTCATAAACGACGTCAACGGATCGCCGGCGGCCAAAACCGGCTAG
GAGGGGTGATCATCTTGTCGGGACCATCACCGGCAACATTAGCTCGAATGGTCGAAAATGGCGGCCAGAGACAGGAAAAG
GAAGTATGAAATTATGGATCGATTCGAAGGACAAAAAACACAATCAAAACCAGCTTTTAAATTTTTTCTTTGCCCCAGAG
TGGTGTCTTGTAATAGATTGCTTCCCTTTTTGGTCACAAATGTCGCCCACAACGATGAATTT-GAGATTTATGTGAACTA
TCCATTTAACATTTCAGATCTTCTGAATGTATATAACAAGAGAAAAAACAGGTTAAACTCATGTAAGGTACTATATCTAC
CTAACCAGATGCATGGCATTTCTCTATGCAAAAGATACCCACTGCACAATACAGAAACCGGCAAAAAAATGCTAGTATCA
GATTCGTCACCCGTTCACGACACCGAGA-----------------------------------AAATACAAGGTAGATTG
CAGTGATTGATATGCTGCAAATAAAGGAGCAATTTATACAAGTTCAATGCCAACCCAAGCTCTCCACAGCAGTAAAAGTG
TCATCTGCTTGGCCCTTTACAACACACAGAACAGGCTTCATGGACACATACCATTG-AACTAGGGTGACTCGCTACTGGC
TGCTGGAGACCGGAGCGCCATCTTCGCTCTGCACACCTTCAATGGCCAGAATTTTCTTAACAACTTGCTTGGGAATGTCA
AGGTCATCCTGCATGCAGCGTAGCAAGGGGTGCGATAAGATGATGCATATCTGGCGGAACAGGACCCGGGCAAGCCCTTG
GCCGCTCTCAAGAATGTAGCCCTCGTACTGGCTGACATGCTCAAGGGCATCAACCAGCGAGTCATACACGTTTTGTGGGC
AGTTATCAGCAGTAGGCTTGTCGTGCAGATAGACTATGTCCATGGTGAAGTTCTTCGGCTTTACGGGCCACTGATGGTG-
--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------
-----------------------------S---S---------S-S----------------------------------
-------S------------------------------------------------------------------------
-----------------S-----------------------------S--------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
---------S---------------------------------------S------------------------------
-----------------------------------------------S--------------------------------
-----------------------------------------------------------------------------S--
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
------------------S--------------------------S--------SSSSSSS-SS-SS-------------
-----------------------------------S-S----------------------------------------SS
S-S--------------------------------------SS-------------------------------------
---------------------------------------------S---------------------S------------
-----SS-------S----S---------------------------S------S-------------------------
-----S--------------------------------------------------------------------------
------------------------------------------------------------------------------S-
-------S----------------------------------S-------------------------------------
---------------------S-------------------S-S--------S----------S----------------
------------------------SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----------S-------
----------S----S--S-------------------------------------------------------------
-S------------------------------------------------------S-----------------------
-------------------------S------------------------------------------------------
--------------------------S-----------------------------------------S-----------
---------S--------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--
>forward_251
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CGCGAATGT
GCTTATTGCGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>reverse_1828
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AAAAACCGGCTAG
GAGGGAC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
