Multiple sequence alignment - TraesCS7D01G079900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G079900 chr7D 100.000 2195 0 0 1 2195 46965559 46963365 0.000000e+00 4054
1 TraesCS7D01G079900 chr7D 82.955 352 27 18 166 508 47113851 47113524 9.920000e-74 287
2 TraesCS7D01G079900 chr7D 87.912 182 10 4 330 508 47056309 47056137 1.030000e-48 204
3 TraesCS7D01G079900 chr7D 96.226 106 4 0 1982 2087 64070455 64070560 8.060000e-40 174
4 TraesCS7D01G079900 chr7D 95.238 105 5 0 1983 2087 536382875 536382771 1.350000e-37 167
5 TraesCS7D01G079900 chr7D 86.441 118 7 3 3 116 47113949 47113837 1.060000e-23 121
6 TraesCS7D01G079900 chr4A 88.349 1502 99 43 330 1787 661302327 661300858 0.000000e+00 1735
7 TraesCS7D01G079900 chr4A 89.266 177 9 3 330 506 661313055 661312889 1.710000e-51 213
8 TraesCS7D01G079900 chr4A 90.476 126 12 0 156 281 661302459 661302334 1.350000e-37 167
9 TraesCS7D01G079900 chr4A 95.833 96 2 2 156 250 717815804 717815898 1.050000e-33 154
10 TraesCS7D01G079900 chr4A 89.167 120 12 1 155 273 661313287 661313168 4.880000e-32 148
11 TraesCS7D01G079900 chr4A 90.698 86 3 1 330 415 661318459 661318379 2.300000e-20 110
12 TraesCS7D01G079900 chr7A 88.354 1185 78 16 640 1787 49234077 49232916 0.000000e+00 1369
13 TraesCS7D01G079900 chr7A 84.186 215 10 6 330 543 49234323 49234132 1.030000e-43 187
14 TraesCS7D01G079900 chr7A 86.928 153 14 5 130 281 49354199 49354052 1.350000e-37 167
15 TraesCS7D01G079900 chr7A 95.146 103 3 1 142 244 78420263 78420163 6.270000e-36 161
16 TraesCS7D01G079900 chr7A 92.593 108 4 3 145 250 49234466 49234361 3.770000e-33 152
17 TraesCS7D01G079900 chr7A 94.000 100 3 2 154 250 49270756 49270657 4.880000e-32 148
18 TraesCS7D01G079900 chr6A 97.143 105 3 0 1983 2087 420841199 420841303 6.230000e-41 178
19 TraesCS7D01G079900 chr5B 93.162 117 8 0 1858 1974 451432987 451432871 2.900000e-39 172
20 TraesCS7D01G079900 chr2D 96.190 105 3 1 1983 2087 102761373 102761476 1.040000e-38 171
21 TraesCS7D01G079900 chr4D 88.652 141 12 4 1838 1975 461464244 461464105 3.750000e-38 169
22 TraesCS7D01G079900 chr5A 95.238 105 4 1 1983 2087 123131214 123131111 4.850000e-37 165
23 TraesCS7D01G079900 chr4B 91.597 119 10 0 1857 1975 467274873 467274991 4.850000e-37 165
24 TraesCS7D01G079900 chr4B 91.597 119 10 0 1858 1976 663766095 663766213 4.850000e-37 165
25 TraesCS7D01G079900 chr4B 87.143 140 13 5 1836 1974 588198646 588198511 1.050000e-33 154
26 TraesCS7D01G079900 chr2B 91.597 119 10 0 1857 1975 158635062 158635180 4.850000e-37 165
27 TraesCS7D01G079900 chr2B 94.340 106 5 1 1983 2087 362713591 362713696 6.270000e-36 161
28 TraesCS7D01G079900 chr2B 90.323 124 11 1 1853 1976 569019698 569019576 6.270000e-36 161
29 TraesCS7D01G079900 chr3B 90.400 125 11 1 1851 1974 380680184 380680308 1.740000e-36 163
30 TraesCS7D01G079900 chr3B 90.244 123 12 0 1852 1974 744209693 744209815 6.270000e-36 161
31 TraesCS7D01G079900 chr6B 94.340 106 5 1 1982 2087 35113373 35113477 6.270000e-36 161
32 TraesCS7D01G079900 chr6B 93.396 106 6 1 1982 2087 35149414 35149518 2.920000e-34 156
33 TraesCS7D01G079900 chr5D 94.286 105 6 0 1983 2087 250410805 250410909 6.270000e-36 161
34 TraesCS7D01G079900 chr1D 97.849 93 0 2 155 245 461899678 461899770 2.260000e-35 159
35 TraesCS7D01G079900 chr1A 91.667 108 5 3 140 244 552905378 552905272 1.760000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G079900 chr7D 46963365 46965559 2194 True 4054.000000 4054 100.000000 1 2195 1 chr7D.!!$R1 2194
1 TraesCS7D01G079900 chr4A 661300858 661302459 1601 True 951.000000 1735 89.412500 156 1787 2 chr4A.!!$R2 1631
2 TraesCS7D01G079900 chr7A 49232916 49234466 1550 True 569.333333 1369 88.377667 145 1787 3 chr7A.!!$R4 1642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.033781 TCGCCGGGGAATAATAACCG 59.966 55.0 20.34 0.46 45.57 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1488 1569 0.035036 AGATGCGATCCCTGCTCATG 59.965 55.0 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.952811 GTCCAGACGTTCACCAGC 58.047 61.111 0.00 0.00 0.00 4.85
21 22 1.668151 GTCCAGACGTTCACCAGCC 60.668 63.158 0.00 0.00 0.00 4.85
22 23 2.738521 CCAGACGTTCACCAGCCG 60.739 66.667 0.00 0.00 0.00 5.52
23 24 2.738521 CAGACGTTCACCAGCCGG 60.739 66.667 0.00 0.00 38.77 6.13
24 25 4.681978 AGACGTTCACCAGCCGGC 62.682 66.667 21.89 21.89 34.57 6.13
28 29 4.025401 GTTCACCAGCCGGCGTTG 62.025 66.667 23.20 19.11 34.57 4.10
39 40 2.435234 GGCGTTGCCCGTGATACA 60.435 61.111 0.00 0.00 44.06 2.29
40 41 2.461110 GGCGTTGCCCGTGATACAG 61.461 63.158 0.00 0.00 44.06 2.74
41 42 1.740296 GCGTTGCCCGTGATACAGT 60.740 57.895 0.00 0.00 39.32 3.55
42 43 0.458889 GCGTTGCCCGTGATACAGTA 60.459 55.000 0.00 0.00 39.32 2.74
43 44 1.556564 CGTTGCCCGTGATACAGTAG 58.443 55.000 0.00 0.00 0.00 2.57
44 45 1.133598 CGTTGCCCGTGATACAGTAGA 59.866 52.381 0.00 0.00 0.00 2.59
45 46 2.537401 GTTGCCCGTGATACAGTAGAC 58.463 52.381 0.00 0.00 0.00 2.59
46 47 1.842052 TGCCCGTGATACAGTAGACA 58.158 50.000 0.00 0.00 0.00 3.41
47 48 1.475280 TGCCCGTGATACAGTAGACAC 59.525 52.381 9.41 9.41 0.00 3.67
51 52 2.174764 CGTGATACAGTAGACACGTGC 58.825 52.381 23.47 8.74 46.75 5.34
52 53 2.413634 CGTGATACAGTAGACACGTGCA 60.414 50.000 23.47 0.00 46.75 4.57
53 54 3.172050 GTGATACAGTAGACACGTGCAG 58.828 50.000 17.22 0.00 0.00 4.41
54 55 2.817844 TGATACAGTAGACACGTGCAGT 59.182 45.455 17.22 4.82 0.00 4.40
55 56 4.004982 TGATACAGTAGACACGTGCAGTA 58.995 43.478 17.22 7.02 0.00 2.74
56 57 2.991434 ACAGTAGACACGTGCAGTAG 57.009 50.000 17.22 4.17 0.00 2.57
57 58 2.501261 ACAGTAGACACGTGCAGTAGA 58.499 47.619 17.22 0.00 0.00 2.59
58 59 3.082548 ACAGTAGACACGTGCAGTAGAT 58.917 45.455 17.22 0.00 0.00 1.98
59 60 3.506455 ACAGTAGACACGTGCAGTAGATT 59.494 43.478 17.22 0.00 0.00 2.40
60 61 4.022242 ACAGTAGACACGTGCAGTAGATTT 60.022 41.667 17.22 0.00 0.00 2.17
61 62 4.923871 CAGTAGACACGTGCAGTAGATTTT 59.076 41.667 17.22 0.00 0.00 1.82
62 63 6.090783 CAGTAGACACGTGCAGTAGATTTTA 58.909 40.000 17.22 0.00 0.00 1.52
63 64 6.251589 CAGTAGACACGTGCAGTAGATTTTAG 59.748 42.308 17.22 0.00 0.00 1.85
64 65 5.386958 AGACACGTGCAGTAGATTTTAGA 57.613 39.130 17.22 0.00 0.00 2.10
65 66 5.967088 AGACACGTGCAGTAGATTTTAGAT 58.033 37.500 17.22 0.00 0.00 1.98
66 67 7.096884 AGACACGTGCAGTAGATTTTAGATA 57.903 36.000 17.22 0.00 0.00 1.98
67 68 7.717568 AGACACGTGCAGTAGATTTTAGATAT 58.282 34.615 17.22 0.00 0.00 1.63
68 69 8.198109 AGACACGTGCAGTAGATTTTAGATATT 58.802 33.333 17.22 0.00 0.00 1.28
69 70 8.718102 ACACGTGCAGTAGATTTTAGATATTT 57.282 30.769 17.22 0.00 0.00 1.40
70 71 9.162764 ACACGTGCAGTAGATTTTAGATATTTT 57.837 29.630 17.22 0.00 0.00 1.82
71 72 9.988350 CACGTGCAGTAGATTTTAGATATTTTT 57.012 29.630 0.82 0.00 0.00 1.94
72 73 9.988350 ACGTGCAGTAGATTTTAGATATTTTTG 57.012 29.630 0.00 0.00 0.00 2.44
76 77 9.651718 GCAGTAGATTTTAGATATTTTTGACCG 57.348 33.333 0.00 0.00 0.00 4.79
79 80 9.845305 GTAGATTTTAGATATTTTTGACCGACG 57.155 33.333 0.00 0.00 0.00 5.12
80 81 7.407337 AGATTTTAGATATTTTTGACCGACGC 58.593 34.615 0.00 0.00 0.00 5.19
81 82 4.765281 TTAGATATTTTTGACCGACGCG 57.235 40.909 3.53 3.53 0.00 6.01
82 83 2.883574 AGATATTTTTGACCGACGCGA 58.116 42.857 15.93 0.00 0.00 5.87
83 84 3.255725 AGATATTTTTGACCGACGCGAA 58.744 40.909 15.93 0.00 0.00 4.70
84 85 3.680937 AGATATTTTTGACCGACGCGAAA 59.319 39.130 15.93 0.00 0.00 3.46
85 86 2.759538 ATTTTTGACCGACGCGAAAA 57.240 40.000 15.93 7.67 0.00 2.29
86 87 1.812662 TTTTTGACCGACGCGAAAAC 58.187 45.000 15.93 0.18 0.00 2.43
87 88 0.315220 TTTTGACCGACGCGAAAACG 60.315 50.000 15.93 12.70 39.50 3.60
88 89 1.144565 TTTGACCGACGCGAAAACGA 61.145 50.000 15.93 0.00 36.70 3.85
89 90 1.144565 TTGACCGACGCGAAAACGAA 61.145 50.000 15.93 1.08 36.70 3.85
90 91 1.144565 TGACCGACGCGAAAACGAAA 61.145 50.000 15.93 0.00 36.70 3.46
91 92 0.043138 GACCGACGCGAAAACGAAAA 60.043 50.000 15.93 0.00 36.70 2.29
92 93 0.373024 ACCGACGCGAAAACGAAAAA 59.627 45.000 15.93 0.00 36.70 1.94
93 94 0.760219 CCGACGCGAAAACGAAAAAC 59.240 50.000 15.93 0.00 36.70 2.43
94 95 0.760219 CGACGCGAAAACGAAAAACC 59.240 50.000 15.93 0.00 36.70 3.27
95 96 1.812662 GACGCGAAAACGAAAAACCA 58.187 45.000 15.93 0.00 36.70 3.67
96 97 2.175566 GACGCGAAAACGAAAAACCAA 58.824 42.857 15.93 0.00 36.70 3.67
97 98 2.593257 ACGCGAAAACGAAAAACCAAA 58.407 38.095 15.93 0.00 36.70 3.28
98 99 3.180613 ACGCGAAAACGAAAAACCAAAT 58.819 36.364 15.93 0.00 36.70 2.32
99 100 4.349501 ACGCGAAAACGAAAAACCAAATA 58.650 34.783 15.93 0.00 36.70 1.40
100 101 4.977347 ACGCGAAAACGAAAAACCAAATAT 59.023 33.333 15.93 0.00 36.70 1.28
101 102 5.115923 ACGCGAAAACGAAAAACCAAATATC 59.884 36.000 15.93 0.00 36.70 1.63
102 103 5.525819 GCGAAAACGAAAAACCAAATATCG 58.474 37.500 0.00 0.00 39.30 2.92
103 104 5.525819 CGAAAACGAAAAACCAAATATCGC 58.474 37.500 0.00 0.00 37.03 4.58
104 105 5.442260 CGAAAACGAAAAACCAAATATCGCC 60.442 40.000 0.00 0.00 37.03 5.54
105 106 3.125698 ACGAAAAACCAAATATCGCCG 57.874 42.857 0.00 0.00 37.03 6.46
106 107 2.485038 ACGAAAAACCAAATATCGCCGT 59.515 40.909 0.00 0.00 37.03 5.68
107 108 3.095738 CGAAAAACCAAATATCGCCGTC 58.904 45.455 0.00 0.00 0.00 4.79
108 109 2.817538 AAAACCAAATATCGCCGTCG 57.182 45.000 0.00 0.00 0.00 5.12
109 110 0.375803 AAACCAAATATCGCCGTCGC 59.624 50.000 0.00 0.00 35.26 5.19
110 111 1.433837 AACCAAATATCGCCGTCGCC 61.434 55.000 0.00 0.00 35.26 5.54
111 112 2.544359 CAAATATCGCCGTCGCCG 59.456 61.111 0.00 0.00 35.26 6.46
122 123 3.591979 CGTCGCCGGGGAATAATAA 57.408 52.632 24.36 0.00 0.00 1.40
123 124 1.142474 CGTCGCCGGGGAATAATAAC 58.858 55.000 24.36 8.49 0.00 1.89
124 125 1.516161 GTCGCCGGGGAATAATAACC 58.484 55.000 24.36 4.13 0.00 2.85
125 126 0.033781 TCGCCGGGGAATAATAACCG 59.966 55.000 20.34 0.46 45.57 4.44
126 127 1.571215 CGCCGGGGAATAATAACCGC 61.571 60.000 14.46 0.00 44.70 5.68
132 133 3.671716 GGGGAATAATAACCGCGAATCT 58.328 45.455 8.23 0.00 0.00 2.40
133 134 4.070009 GGGGAATAATAACCGCGAATCTT 58.930 43.478 8.23 0.00 0.00 2.40
134 135 4.517832 GGGGAATAATAACCGCGAATCTTT 59.482 41.667 8.23 0.00 0.00 2.52
135 136 5.009310 GGGGAATAATAACCGCGAATCTTTT 59.991 40.000 8.23 0.00 0.00 2.27
136 137 6.460537 GGGGAATAATAACCGCGAATCTTTTT 60.461 38.462 8.23 0.00 0.00 1.94
250 253 3.105203 ACAACGACTTTGATGCAAAACG 58.895 40.909 0.00 13.37 38.73 3.60
251 254 3.181505 ACAACGACTTTGATGCAAAACGA 60.182 39.130 18.39 0.00 38.73 3.85
252 255 3.253371 ACGACTTTGATGCAAAACGAG 57.747 42.857 18.39 2.14 37.01 4.18
264 267 2.052782 AAAACGAGTTTGACAGCCCT 57.947 45.000 1.65 0.00 32.36 5.19
275 278 7.208064 AGTTTGACAGCCCTTTTATATCCTA 57.792 36.000 0.00 0.00 0.00 2.94
281 284 7.092623 TGACAGCCCTTTTATATCCTAGTTCAA 60.093 37.037 0.00 0.00 0.00 2.69
282 285 7.639378 ACAGCCCTTTTATATCCTAGTTCAAA 58.361 34.615 0.00 0.00 0.00 2.69
283 286 8.113462 ACAGCCCTTTTATATCCTAGTTCAAAA 58.887 33.333 0.00 0.00 0.00 2.44
284 287 8.966868 CAGCCCTTTTATATCCTAGTTCAAAAA 58.033 33.333 0.00 0.00 0.00 1.94
285 288 8.967918 AGCCCTTTTATATCCTAGTTCAAAAAC 58.032 33.333 0.00 0.00 35.50 2.43
294 297 6.742559 TCCTAGTTCAAAAACAGGAGTACT 57.257 37.500 0.00 0.00 37.57 2.73
295 298 7.844493 TCCTAGTTCAAAAACAGGAGTACTA 57.156 36.000 0.00 0.00 37.57 1.82
296 299 8.431910 TCCTAGTTCAAAAACAGGAGTACTAT 57.568 34.615 0.00 0.00 37.57 2.12
297 300 8.877195 TCCTAGTTCAAAAACAGGAGTACTATT 58.123 33.333 0.00 0.00 37.57 1.73
298 301 8.936864 CCTAGTTCAAAAACAGGAGTACTATTG 58.063 37.037 0.00 0.00 36.54 1.90
299 302 7.745620 AGTTCAAAAACAGGAGTACTATTGG 57.254 36.000 0.00 0.00 37.88 3.16
300 303 7.287810 AGTTCAAAAACAGGAGTACTATTGGT 58.712 34.615 0.00 0.00 37.88 3.67
301 304 7.778382 AGTTCAAAAACAGGAGTACTATTGGTT 59.222 33.333 0.00 0.00 37.88 3.67
302 305 9.059260 GTTCAAAAACAGGAGTACTATTGGTTA 57.941 33.333 9.16 0.00 35.36 2.85
303 306 8.842358 TCAAAAACAGGAGTACTATTGGTTAG 57.158 34.615 9.16 6.43 0.00 2.34
304 307 7.389607 TCAAAAACAGGAGTACTATTGGTTAGC 59.610 37.037 9.16 0.00 0.00 3.09
305 308 6.368779 AAACAGGAGTACTATTGGTTAGCA 57.631 37.500 7.43 0.00 0.00 3.49
306 309 5.340439 ACAGGAGTACTATTGGTTAGCAC 57.660 43.478 0.00 0.00 0.00 4.40
307 310 4.142227 ACAGGAGTACTATTGGTTAGCACG 60.142 45.833 0.00 0.00 30.60 5.34
308 311 4.021916 AGGAGTACTATTGGTTAGCACGT 58.978 43.478 0.00 0.00 30.60 4.49
309 312 4.097589 AGGAGTACTATTGGTTAGCACGTC 59.902 45.833 0.00 0.00 30.60 4.34
310 313 4.025015 AGTACTATTGGTTAGCACGTCG 57.975 45.455 0.00 0.00 30.60 5.12
311 314 3.441572 AGTACTATTGGTTAGCACGTCGT 59.558 43.478 0.00 0.00 30.60 4.34
312 315 2.602878 ACTATTGGTTAGCACGTCGTG 58.397 47.619 21.02 21.02 36.51 4.35
322 325 3.998924 CACGTCGTGCTACAGATCT 57.001 52.632 13.22 0.00 0.00 2.75
323 326 1.816370 CACGTCGTGCTACAGATCTC 58.184 55.000 13.22 0.00 0.00 2.75
324 327 1.398739 CACGTCGTGCTACAGATCTCT 59.601 52.381 13.22 0.00 0.00 3.10
325 328 1.666700 ACGTCGTGCTACAGATCTCTC 59.333 52.381 0.00 0.00 0.00 3.20
326 329 1.937223 CGTCGTGCTACAGATCTCTCT 59.063 52.381 0.00 0.00 0.00 3.10
327 330 3.124560 CGTCGTGCTACAGATCTCTCTA 58.875 50.000 0.00 0.00 0.00 2.43
328 331 3.743911 CGTCGTGCTACAGATCTCTCTAT 59.256 47.826 0.00 0.00 0.00 1.98
337 340 4.144297 ACAGATCTCTCTATCCTGTCAGC 58.856 47.826 0.00 0.00 0.00 4.26
369 372 4.269523 GGCAGCCAGTGGGTCACA 62.270 66.667 11.93 0.00 36.74 3.58
370 373 2.034687 GCAGCCAGTGGGTCACAT 59.965 61.111 11.93 0.00 36.74 3.21
371 374 2.042831 GCAGCCAGTGGGTCACATC 61.043 63.158 11.93 0.00 36.74 3.06
372 375 1.376086 CAGCCAGTGGGTCACATCA 59.624 57.895 11.93 0.00 36.74 3.07
373 376 0.957395 CAGCCAGTGGGTCACATCAC 60.957 60.000 11.93 0.00 36.74 3.06
485 495 2.487532 GGACACCCGATCGACCGAT 61.488 63.158 18.66 4.42 37.59 4.18
489 499 2.335369 CCCGATCGACCGATCCAC 59.665 66.667 18.66 3.74 45.95 4.02
498 508 1.128507 CGACCGATCCACAACATGTTG 59.871 52.381 32.03 32.03 45.58 3.33
513 523 6.038603 ACAACATGTTGCATCATGGAGTATAC 59.961 38.462 33.23 6.30 46.39 1.47
519 530 4.488770 TGCATCATGGAGTATACCCTGTA 58.511 43.478 0.00 0.00 0.00 2.74
520 531 4.283467 TGCATCATGGAGTATACCCTGTAC 59.717 45.833 0.00 0.00 0.00 2.90
521 532 4.618460 GCATCATGGAGTATACCCTGTACG 60.618 50.000 0.00 0.00 0.00 3.67
588 615 0.530650 CCACGCTAGGCCATGTGTAG 60.531 60.000 5.01 0.00 0.00 2.74
589 616 1.144057 ACGCTAGGCCATGTGTAGC 59.856 57.895 5.01 8.32 36.59 3.58
591 618 0.877649 CGCTAGGCCATGTGTAGCTG 60.878 60.000 16.40 8.29 37.60 4.24
594 621 1.271127 TAGGCCATGTGTAGCTGCCA 61.271 55.000 5.01 3.88 44.60 4.92
595 622 2.117156 GGCCATGTGTAGCTGCCAG 61.117 63.158 0.00 0.00 41.76 4.85
596 623 1.078214 GCCATGTGTAGCTGCCAGA 60.078 57.895 0.00 0.00 0.00 3.86
597 624 0.465097 GCCATGTGTAGCTGCCAGAT 60.465 55.000 0.00 0.00 0.00 2.90
598 625 2.020694 GCCATGTGTAGCTGCCAGATT 61.021 52.381 0.00 0.00 0.00 2.40
602 629 2.910199 TGTGTAGCTGCCAGATTGATC 58.090 47.619 0.00 0.00 0.00 2.92
603 630 1.863454 GTGTAGCTGCCAGATTGATCG 59.137 52.381 0.00 0.00 0.00 3.69
604 631 1.202568 TGTAGCTGCCAGATTGATCGG 60.203 52.381 0.00 0.00 0.00 4.18
605 632 1.123077 TAGCTGCCAGATTGATCGGT 58.877 50.000 0.00 0.00 0.00 4.69
606 633 0.179062 AGCTGCCAGATTGATCGGTC 60.179 55.000 0.00 0.00 0.00 4.79
607 634 1.493950 GCTGCCAGATTGATCGGTCG 61.494 60.000 0.00 0.00 0.00 4.79
608 635 0.103026 CTGCCAGATTGATCGGTCGA 59.897 55.000 0.00 0.00 0.00 4.20
609 636 0.103026 TGCCAGATTGATCGGTCGAG 59.897 55.000 0.00 0.00 0.00 4.04
610 637 1.218230 GCCAGATTGATCGGTCGAGC 61.218 60.000 4.06 4.06 0.00 5.03
614 641 1.272114 GATTGATCGGTCGAGCGAGC 61.272 60.000 38.96 38.96 39.05 5.03
626 653 1.190323 CGAGCGAGCGATTAATTCCAC 59.810 52.381 0.00 0.00 0.00 4.02
627 654 1.527311 GAGCGAGCGATTAATTCCACC 59.473 52.381 0.00 0.00 0.00 4.61
628 655 1.134521 AGCGAGCGATTAATTCCACCA 60.135 47.619 0.00 0.00 0.00 4.17
655 693 2.126463 GTCGCGTCACAGCTGCTA 60.126 61.111 15.27 0.00 34.40 3.49
659 697 2.510238 CGTCACAGCTGCTAGCCC 60.510 66.667 15.27 3.06 43.77 5.19
825 863 1.571215 GGCCACGGAGTTGGTTAACG 61.571 60.000 0.00 0.00 41.61 3.18
835 873 5.220931 CGGAGTTGGTTAACGCTACTAGTAT 60.221 44.000 2.33 0.00 41.71 2.12
836 874 6.205071 GGAGTTGGTTAACGCTACTAGTATC 58.795 44.000 2.33 0.00 41.71 2.24
994 1069 0.755327 GCAGAGGAGGAGGAGGAGAC 60.755 65.000 0.00 0.00 0.00 3.36
1030 1105 3.336568 AGCTGGGCATCTGGCTGT 61.337 61.111 3.62 0.00 44.01 4.40
1201 1276 1.658717 GTCATCGCCTGATCGGTCG 60.659 63.158 0.00 0.00 35.97 4.79
1202 1277 2.355126 CATCGCCTGATCGGTCGG 60.355 66.667 4.98 0.00 34.48 4.79
1208 1283 2.509336 CTGATCGGTCGGCCACAC 60.509 66.667 6.96 0.00 34.09 3.82
1284 1359 7.187824 TGCTGTTCTTCCTCTTGTATATTCT 57.812 36.000 0.00 0.00 0.00 2.40
1300 1375 2.728690 TTCTGCGCGTCCTAGTTTTA 57.271 45.000 8.43 0.00 0.00 1.52
1304 1379 3.998341 TCTGCGCGTCCTAGTTTTATTTT 59.002 39.130 8.43 0.00 0.00 1.82
1327 1402 0.730155 CGCGTCCTAGTTGTGCGTAA 60.730 55.000 0.00 0.00 43.50 3.18
1368 1443 1.258445 AAGGACCGGTGCTACCTCTG 61.258 60.000 30.16 0.00 35.66 3.35
1421 1500 5.596845 TCCGTTTTCCCTTTTGATTTTGAG 58.403 37.500 0.00 0.00 0.00 3.02
1430 1509 6.611236 TCCCTTTTGATTTTGAGTTCCTCTTT 59.389 34.615 0.00 0.00 0.00 2.52
1433 1514 7.254556 CCTTTTGATTTTGAGTTCCTCTTTTGC 60.255 37.037 0.00 0.00 0.00 3.68
1488 1569 6.553879 GCAATTGCGTTGAGGAGATGATCC 62.554 50.000 15.87 0.00 42.34 3.36
1511 1592 0.758310 AGCAGGGATCGCATCTGAGA 60.758 55.000 12.83 0.00 0.00 3.27
1535 1616 8.512956 AGAGATGATCTTGTTTTCAGATGTTTG 58.487 33.333 0.00 0.00 32.99 2.93
1537 1618 8.636213 AGATGATCTTGTTTTCAGATGTTTGTT 58.364 29.630 0.00 0.00 0.00 2.83
1695 1780 0.032952 TGCTGTCCTTGTCGTACACC 59.967 55.000 0.00 0.00 0.00 4.16
1703 1788 3.142951 CCTTGTCGTACACCCAATCAAA 58.857 45.455 0.00 0.00 0.00 2.69
1704 1789 3.188460 CCTTGTCGTACACCCAATCAAAG 59.812 47.826 0.00 0.00 0.00 2.77
1705 1790 2.147958 TGTCGTACACCCAATCAAAGC 58.852 47.619 0.00 0.00 0.00 3.51
1706 1791 2.147958 GTCGTACACCCAATCAAAGCA 58.852 47.619 0.00 0.00 0.00 3.91
1707 1792 2.095919 GTCGTACACCCAATCAAAGCAC 60.096 50.000 0.00 0.00 0.00 4.40
1708 1793 1.136085 CGTACACCCAATCAAAGCACG 60.136 52.381 0.00 0.00 0.00 5.34
1709 1794 1.199097 GTACACCCAATCAAAGCACGG 59.801 52.381 0.00 0.00 0.00 4.94
1723 1813 7.966246 TCAAAGCACGGTACTAAATTTCTTA 57.034 32.000 0.00 0.00 0.00 2.10
1732 1822 8.975439 ACGGTACTAAATTTCTTATGCTATTCG 58.025 33.333 0.00 0.00 0.00 3.34
1744 1834 2.100197 TGCTATTCGCCGGATAGCTAT 58.900 47.619 31.34 5.76 42.60 2.97
1787 1877 7.665561 TTCATGATAAGATCAAACACGAACA 57.334 32.000 0.00 0.00 43.50 3.18
1788 1878 7.665561 TCATGATAAGATCAAACACGAACAA 57.334 32.000 0.00 0.00 43.50 2.83
1789 1879 7.742151 TCATGATAAGATCAAACACGAACAAG 58.258 34.615 0.00 0.00 43.50 3.16
1790 1880 7.602265 TCATGATAAGATCAAACACGAACAAGA 59.398 33.333 0.00 0.00 43.50 3.02
1791 1881 7.351414 TGATAAGATCAAACACGAACAAGAG 57.649 36.000 0.00 0.00 36.11 2.85
1792 1882 4.474226 AAGATCAAACACGAACAAGAGC 57.526 40.909 0.00 0.00 0.00 4.09
1793 1883 3.466836 AGATCAAACACGAACAAGAGCA 58.533 40.909 0.00 0.00 0.00 4.26
1794 1884 4.067896 AGATCAAACACGAACAAGAGCAT 58.932 39.130 0.00 0.00 0.00 3.79
1795 1885 3.607422 TCAAACACGAACAAGAGCATG 57.393 42.857 0.00 0.00 0.00 4.06
1796 1886 2.942376 TCAAACACGAACAAGAGCATGT 59.058 40.909 0.00 0.00 34.24 3.21
1797 1887 4.123506 TCAAACACGAACAAGAGCATGTA 58.876 39.130 0.00 0.00 32.02 2.29
1798 1888 4.025229 TCAAACACGAACAAGAGCATGTAC 60.025 41.667 0.00 0.00 32.02 2.90
1799 1889 2.058798 ACACGAACAAGAGCATGTACG 58.941 47.619 0.00 0.00 32.02 3.67
1800 1890 1.390123 CACGAACAAGAGCATGTACGG 59.610 52.381 0.00 0.00 32.02 4.02
1801 1891 1.271379 ACGAACAAGAGCATGTACGGA 59.729 47.619 0.00 0.00 32.02 4.69
1802 1892 2.094182 ACGAACAAGAGCATGTACGGAT 60.094 45.455 0.00 0.00 32.02 4.18
1803 1893 3.129813 ACGAACAAGAGCATGTACGGATA 59.870 43.478 0.00 0.00 32.02 2.59
1804 1894 4.109766 CGAACAAGAGCATGTACGGATAA 58.890 43.478 0.00 0.00 32.02 1.75
1805 1895 4.565166 CGAACAAGAGCATGTACGGATAAA 59.435 41.667 0.00 0.00 32.02 1.40
1806 1896 5.062934 CGAACAAGAGCATGTACGGATAAAA 59.937 40.000 0.00 0.00 32.02 1.52
1807 1897 5.796350 ACAAGAGCATGTACGGATAAAAC 57.204 39.130 0.00 0.00 0.00 2.43
1808 1898 4.634443 ACAAGAGCATGTACGGATAAAACC 59.366 41.667 0.00 0.00 0.00 3.27
1809 1899 4.481368 AGAGCATGTACGGATAAAACCA 57.519 40.909 0.00 0.00 0.00 3.67
1810 1900 5.036117 AGAGCATGTACGGATAAAACCAT 57.964 39.130 0.00 0.00 0.00 3.55
1811 1901 6.169557 AGAGCATGTACGGATAAAACCATA 57.830 37.500 0.00 0.00 0.00 2.74
1812 1902 6.223852 AGAGCATGTACGGATAAAACCATAG 58.776 40.000 0.00 0.00 0.00 2.23
1813 1903 6.041637 AGAGCATGTACGGATAAAACCATAGA 59.958 38.462 0.00 0.00 0.00 1.98
1814 1904 6.588204 AGCATGTACGGATAAAACCATAGAA 58.412 36.000 0.00 0.00 0.00 2.10
1815 1905 7.051623 AGCATGTACGGATAAAACCATAGAAA 58.948 34.615 0.00 0.00 0.00 2.52
1816 1906 7.226720 AGCATGTACGGATAAAACCATAGAAAG 59.773 37.037 0.00 0.00 0.00 2.62
1817 1907 7.012044 GCATGTACGGATAAAACCATAGAAAGT 59.988 37.037 0.00 0.00 0.00 2.66
1818 1908 9.537192 CATGTACGGATAAAACCATAGAAAGTA 57.463 33.333 0.00 0.00 0.00 2.24
1870 1960 8.149631 ACTACTATATAGTACTCCCTCTGTCC 57.850 42.308 17.03 0.00 37.73 4.02
1871 1961 6.391479 ACTATATAGTACTCCCTCTGTCCC 57.609 45.833 13.88 0.00 34.13 4.46
1872 1962 5.856160 ACTATATAGTACTCCCTCTGTCCCA 59.144 44.000 13.88 0.00 34.13 4.37
1873 1963 5.681494 ATATAGTACTCCCTCTGTCCCAA 57.319 43.478 0.00 0.00 0.00 4.12
1874 1964 2.715763 AGTACTCCCTCTGTCCCAAA 57.284 50.000 0.00 0.00 0.00 3.28
1875 1965 2.986050 AGTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
1876 1966 3.532102 AGTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
1877 1967 4.695606 AGTACTCCCTCTGTCCCAAAATA 58.304 43.478 0.00 0.00 0.00 1.40
1878 1968 4.470304 AGTACTCCCTCTGTCCCAAAATAC 59.530 45.833 0.00 0.00 0.00 1.89
1879 1969 3.532102 ACTCCCTCTGTCCCAAAATACT 58.468 45.455 0.00 0.00 0.00 2.12
1880 1970 3.916989 ACTCCCTCTGTCCCAAAATACTT 59.083 43.478 0.00 0.00 0.00 2.24
1881 1971 4.263506 ACTCCCTCTGTCCCAAAATACTTG 60.264 45.833 0.00 0.00 0.00 3.16
1882 1972 3.655777 TCCCTCTGTCCCAAAATACTTGT 59.344 43.478 0.00 0.00 0.00 3.16
1883 1973 4.010349 CCCTCTGTCCCAAAATACTTGTC 58.990 47.826 0.00 0.00 0.00 3.18
1884 1974 3.684788 CCTCTGTCCCAAAATACTTGTCG 59.315 47.826 0.00 0.00 0.00 4.35
1885 1975 3.670625 TCTGTCCCAAAATACTTGTCGG 58.329 45.455 0.00 0.00 0.00 4.79
1886 1976 3.325425 TCTGTCCCAAAATACTTGTCGGA 59.675 43.478 0.00 0.00 0.00 4.55
1887 1977 3.670625 TGTCCCAAAATACTTGTCGGAG 58.329 45.455 0.00 0.00 0.00 4.63
1888 1978 3.007635 GTCCCAAAATACTTGTCGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1889 1979 2.907696 TCCCAAAATACTTGTCGGAGGA 59.092 45.455 0.00 0.00 0.00 3.71
1890 1980 3.328343 TCCCAAAATACTTGTCGGAGGAA 59.672 43.478 0.00 0.00 0.00 3.36
1891 1981 4.018779 TCCCAAAATACTTGTCGGAGGAAT 60.019 41.667 0.00 0.00 0.00 3.01
1892 1982 4.096382 CCCAAAATACTTGTCGGAGGAATG 59.904 45.833 0.00 0.00 0.00 2.67
1893 1983 4.096382 CCAAAATACTTGTCGGAGGAATGG 59.904 45.833 0.00 0.00 0.00 3.16
1894 1984 4.837093 AAATACTTGTCGGAGGAATGGA 57.163 40.909 0.00 0.00 0.00 3.41
1895 1985 5.373812 AAATACTTGTCGGAGGAATGGAT 57.626 39.130 0.00 0.00 0.00 3.41
1896 1986 2.698855 ACTTGTCGGAGGAATGGATG 57.301 50.000 0.00 0.00 0.00 3.51
1897 1987 1.909302 ACTTGTCGGAGGAATGGATGT 59.091 47.619 0.00 0.00 0.00 3.06
1898 1988 3.104512 ACTTGTCGGAGGAATGGATGTA 58.895 45.455 0.00 0.00 0.00 2.29
1899 1989 3.711704 ACTTGTCGGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 0.00 2.29
1900 1990 4.202264 ACTTGTCGGAGGAATGGATGTATC 60.202 45.833 0.00 0.00 0.00 2.24
1901 1991 3.576861 TGTCGGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 0.00 1.98
1902 1992 4.736473 TGTCGGAGGAATGGATGTATCTA 58.264 43.478 0.00 0.00 0.00 1.98
1903 1993 5.144832 TGTCGGAGGAATGGATGTATCTAA 58.855 41.667 0.00 0.00 0.00 2.10
1904 1994 5.600898 TGTCGGAGGAATGGATGTATCTAAA 59.399 40.000 0.00 0.00 0.00 1.85
1905 1995 5.927115 GTCGGAGGAATGGATGTATCTAAAC 59.073 44.000 0.00 0.00 0.00 2.01
1906 1996 4.923871 CGGAGGAATGGATGTATCTAAACG 59.076 45.833 0.00 0.00 0.00 3.60
1907 1997 5.509163 CGGAGGAATGGATGTATCTAAACGT 60.509 44.000 0.00 0.00 0.00 3.99
1908 1998 6.294342 CGGAGGAATGGATGTATCTAAACGTA 60.294 42.308 0.00 0.00 0.00 3.57
1909 1999 7.577046 CGGAGGAATGGATGTATCTAAACGTAT 60.577 40.741 0.00 0.00 0.00 3.06
1910 2000 8.095169 GGAGGAATGGATGTATCTAAACGTATT 58.905 37.037 0.00 0.00 0.00 1.89
1911 2001 9.490379 GAGGAATGGATGTATCTAAACGTATTT 57.510 33.333 0.00 0.00 0.00 1.40
1912 2002 9.847224 AGGAATGGATGTATCTAAACGTATTTT 57.153 29.630 0.00 0.00 0.00 1.82
1939 2029 8.952278 AGTTTTAGATACATTCGGTTTTATGCA 58.048 29.630 0.00 0.00 0.00 3.96
1940 2030 9.730420 GTTTTAGATACATTCGGTTTTATGCAT 57.270 29.630 3.79 3.79 0.00 3.96
1943 2033 9.944663 TTAGATACATTCGGTTTTATGCATTTC 57.055 29.630 3.54 0.00 0.00 2.17
1944 2034 8.225603 AGATACATTCGGTTTTATGCATTTCT 57.774 30.769 3.54 0.00 0.00 2.52
1945 2035 8.345565 AGATACATTCGGTTTTATGCATTTCTC 58.654 33.333 3.54 0.00 0.00 2.87
1946 2036 5.650543 ACATTCGGTTTTATGCATTTCTCC 58.349 37.500 3.54 2.58 0.00 3.71
1947 2037 4.349663 TTCGGTTTTATGCATTTCTCCG 57.650 40.909 19.55 19.55 38.36 4.63
1948 2038 3.601435 TCGGTTTTATGCATTTCTCCGA 58.399 40.909 22.30 22.30 42.52 4.55
1949 2039 3.372822 TCGGTTTTATGCATTTCTCCGAC 59.627 43.478 22.30 7.63 40.46 4.79
1950 2040 3.126171 CGGTTTTATGCATTTCTCCGACA 59.874 43.478 20.40 0.00 39.17 4.35
1951 2041 4.378978 CGGTTTTATGCATTTCTCCGACAA 60.379 41.667 20.40 0.00 39.17 3.18
1952 2042 5.465935 GGTTTTATGCATTTCTCCGACAAA 58.534 37.500 3.54 0.00 0.00 2.83
1953 2043 6.099341 GGTTTTATGCATTTCTCCGACAAAT 58.901 36.000 3.54 0.00 0.00 2.32
1954 2044 7.254852 GGTTTTATGCATTTCTCCGACAAATA 58.745 34.615 3.54 0.00 0.00 1.40
1955 2045 7.920682 GGTTTTATGCATTTCTCCGACAAATAT 59.079 33.333 3.54 0.00 0.00 1.28
1956 2046 9.301153 GTTTTATGCATTTCTCCGACAAATATT 57.699 29.630 3.54 0.00 0.00 1.28
1957 2047 9.868277 TTTTATGCATTTCTCCGACAAATATTT 57.132 25.926 3.54 0.00 0.00 1.40
1958 2048 9.868277 TTTATGCATTTCTCCGACAAATATTTT 57.132 25.926 3.54 0.00 0.00 1.82
1959 2049 7.760131 ATGCATTTCTCCGACAAATATTTTG 57.240 32.000 0.00 0.00 0.00 2.44
1960 2050 6.098679 TGCATTTCTCCGACAAATATTTTGG 58.901 36.000 0.00 1.50 0.00 3.28
1961 2051 5.519927 GCATTTCTCCGACAAATATTTTGGG 59.480 40.000 0.00 0.59 0.00 4.12
1962 2052 6.627065 GCATTTCTCCGACAAATATTTTGGGA 60.627 38.462 0.00 4.92 0.00 4.37
1963 2053 5.890424 TTCTCCGACAAATATTTTGGGAC 57.110 39.130 0.00 0.00 0.00 4.46
1964 2054 3.936453 TCTCCGACAAATATTTTGGGACG 59.064 43.478 0.00 0.46 0.00 4.79
1965 2055 3.011119 TCCGACAAATATTTTGGGACGG 58.989 45.455 16.31 16.31 36.70 4.79
1966 2056 3.011119 CCGACAAATATTTTGGGACGGA 58.989 45.455 17.03 0.00 37.12 4.69
1967 2057 3.064820 CCGACAAATATTTTGGGACGGAG 59.935 47.826 17.03 0.14 37.12 4.63
1968 2058 3.064820 CGACAAATATTTTGGGACGGAGG 59.935 47.826 0.00 0.00 0.00 4.30
1969 2059 3.361786 ACAAATATTTTGGGACGGAGGG 58.638 45.455 0.00 0.00 0.00 4.30
1970 2060 3.010808 ACAAATATTTTGGGACGGAGGGA 59.989 43.478 0.00 0.00 0.00 4.20
1971 2061 3.577805 AATATTTTGGGACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
1972 2062 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
1973 2063 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1974 2064 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
1975 2065 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
1976 2066 0.324091 TTGGGACGGAGGGAGTACTC 60.324 60.000 14.87 14.87 36.76 2.59
1987 2077 2.233305 GGAGTACTCCCTCCTGTTGA 57.767 55.000 28.87 0.00 46.34 3.18
1988 2078 2.104170 GGAGTACTCCCTCCTGTTGAG 58.896 57.143 28.87 0.00 46.34 3.02
1989 2079 2.557901 GGAGTACTCCCTCCTGTTGAGT 60.558 54.545 28.87 0.00 46.34 3.41
1990 2080 3.308976 GGAGTACTCCCTCCTGTTGAGTA 60.309 52.174 28.87 0.00 46.34 2.59
1991 2081 4.538738 GAGTACTCCCTCCTGTTGAGTAT 58.461 47.826 12.13 0.00 41.96 2.12
1992 2082 5.398809 GGAGTACTCCCTCCTGTTGAGTATA 60.399 48.000 28.87 0.00 46.34 1.47
1993 2083 6.282568 AGTACTCCCTCCTGTTGAGTATAT 57.717 41.667 0.00 0.00 41.96 0.86
1994 2084 6.071984 AGTACTCCCTCCTGTTGAGTATATG 58.928 44.000 0.00 0.00 41.96 1.78
1995 2085 4.884961 ACTCCCTCCTGTTGAGTATATGT 58.115 43.478 0.00 0.00 39.65 2.29
1996 2086 6.027025 ACTCCCTCCTGTTGAGTATATGTA 57.973 41.667 0.00 0.00 39.65 2.29
1997 2087 6.625267 ACTCCCTCCTGTTGAGTATATGTAT 58.375 40.000 0.00 0.00 39.65 2.29
1998 2088 7.076446 ACTCCCTCCTGTTGAGTATATGTATT 58.924 38.462 0.00 0.00 39.65 1.89
1999 2089 7.569111 ACTCCCTCCTGTTGAGTATATGTATTT 59.431 37.037 0.00 0.00 39.65 1.40
2000 2090 9.090103 CTCCCTCCTGTTGAGTATATGTATTTA 57.910 37.037 0.00 0.00 39.65 1.40
2001 2091 8.867097 TCCCTCCTGTTGAGTATATGTATTTAC 58.133 37.037 0.00 0.00 39.65 2.01
2002 2092 8.095169 CCCTCCTGTTGAGTATATGTATTTACC 58.905 40.741 0.00 0.00 39.65 2.85
2003 2093 8.647796 CCTCCTGTTGAGTATATGTATTTACCA 58.352 37.037 0.00 0.00 39.65 3.25
2004 2094 9.477484 CTCCTGTTGAGTATATGTATTTACCAC 57.523 37.037 0.00 0.00 36.27 4.16
2005 2095 8.139350 TCCTGTTGAGTATATGTATTTACCACG 58.861 37.037 0.00 0.00 0.00 4.94
2006 2096 7.924412 CCTGTTGAGTATATGTATTTACCACGT 59.076 37.037 0.00 0.00 0.00 4.49
2007 2097 8.637281 TGTTGAGTATATGTATTTACCACGTG 57.363 34.615 9.08 9.08 0.00 4.49
2008 2098 8.252417 TGTTGAGTATATGTATTTACCACGTGT 58.748 33.333 15.65 5.35 0.00 4.49
2009 2099 9.734620 GTTGAGTATATGTATTTACCACGTGTA 57.265 33.333 15.65 4.31 0.00 2.90
2016 2106 9.826574 ATATGTATTTACCACGTGTATTCTTGT 57.173 29.630 15.65 5.70 0.00 3.16
2018 2108 8.464770 TGTATTTACCACGTGTATTCTTGTAC 57.535 34.615 15.65 7.51 0.00 2.90
2019 2109 8.306038 TGTATTTACCACGTGTATTCTTGTACT 58.694 33.333 15.65 1.09 0.00 2.73
2020 2110 7.823149 ATTTACCACGTGTATTCTTGTACTC 57.177 36.000 15.65 0.00 0.00 2.59
2021 2111 4.184079 ACCACGTGTATTCTTGTACTCC 57.816 45.455 15.65 0.00 0.00 3.85
2022 2112 3.575256 ACCACGTGTATTCTTGTACTCCA 59.425 43.478 15.65 0.00 0.00 3.86
2023 2113 4.039488 ACCACGTGTATTCTTGTACTCCAA 59.961 41.667 15.65 0.00 0.00 3.53
2033 2123 4.195225 CTTGTACTCCAAGTCTTCCTCC 57.805 50.000 0.00 0.00 44.64 4.30
2034 2124 3.544698 TGTACTCCAAGTCTTCCTCCT 57.455 47.619 0.00 0.00 0.00 3.69
2035 2125 3.858135 TGTACTCCAAGTCTTCCTCCTT 58.142 45.455 0.00 0.00 0.00 3.36
2036 2126 3.578716 TGTACTCCAAGTCTTCCTCCTTG 59.421 47.826 0.00 0.00 38.21 3.61
2037 2127 2.695585 ACTCCAAGTCTTCCTCCTTGT 58.304 47.619 0.00 0.00 37.05 3.16
2038 2128 2.370189 ACTCCAAGTCTTCCTCCTTGTG 59.630 50.000 0.00 0.00 37.05 3.33
2039 2129 2.370189 CTCCAAGTCTTCCTCCTTGTGT 59.630 50.000 0.00 0.00 37.05 3.72
2040 2130 3.578716 CTCCAAGTCTTCCTCCTTGTGTA 59.421 47.826 0.00 0.00 37.05 2.90
2041 2131 4.168101 TCCAAGTCTTCCTCCTTGTGTAT 58.832 43.478 0.00 0.00 37.05 2.29
2042 2132 5.338632 TCCAAGTCTTCCTCCTTGTGTATA 58.661 41.667 0.00 0.00 37.05 1.47
2043 2133 5.422331 TCCAAGTCTTCCTCCTTGTGTATAG 59.578 44.000 0.00 0.00 37.05 1.31
2044 2134 5.187967 CCAAGTCTTCCTCCTTGTGTATAGT 59.812 44.000 0.00 0.00 37.05 2.12
2045 2135 6.295916 CCAAGTCTTCCTCCTTGTGTATAGTT 60.296 42.308 0.00 0.00 37.05 2.24
2046 2136 6.287589 AGTCTTCCTCCTTGTGTATAGTTG 57.712 41.667 0.00 0.00 0.00 3.16
2047 2137 6.017192 AGTCTTCCTCCTTGTGTATAGTTGA 58.983 40.000 0.00 0.00 0.00 3.18
2048 2138 6.153680 AGTCTTCCTCCTTGTGTATAGTTGAG 59.846 42.308 0.00 0.00 0.00 3.02
2049 2139 6.153000 GTCTTCCTCCTTGTGTATAGTTGAGA 59.847 42.308 0.00 0.00 0.00 3.27
2050 2140 6.724441 TCTTCCTCCTTGTGTATAGTTGAGAA 59.276 38.462 0.00 0.00 0.00 2.87
2051 2141 7.400339 TCTTCCTCCTTGTGTATAGTTGAGAAT 59.600 37.037 0.00 0.00 0.00 2.40
2052 2142 8.603898 TTCCTCCTTGTGTATAGTTGAGAATA 57.396 34.615 0.00 0.00 0.00 1.75
2053 2143 8.783660 TCCTCCTTGTGTATAGTTGAGAATAT 57.216 34.615 0.00 0.00 0.00 1.28
2054 2144 9.877222 TCCTCCTTGTGTATAGTTGAGAATATA 57.123 33.333 0.00 0.00 0.00 0.86
2060 2150 9.542462 TTGTGTATAGTTGAGAATATAACTGCC 57.458 33.333 0.00 0.00 37.66 4.85
2061 2151 8.148351 TGTGTATAGTTGAGAATATAACTGCCC 58.852 37.037 0.00 0.00 37.66 5.36
2062 2152 8.368668 GTGTATAGTTGAGAATATAACTGCCCT 58.631 37.037 0.00 0.00 37.66 5.19
2063 2153 9.596308 TGTATAGTTGAGAATATAACTGCCCTA 57.404 33.333 0.00 0.00 37.66 3.53
2066 2156 7.380423 AGTTGAGAATATAACTGCCCTATGT 57.620 36.000 0.00 0.00 35.91 2.29
2067 2157 8.492415 AGTTGAGAATATAACTGCCCTATGTA 57.508 34.615 0.00 0.00 35.91 2.29
2068 2158 8.368668 AGTTGAGAATATAACTGCCCTATGTAC 58.631 37.037 0.00 0.00 35.91 2.90
2069 2159 8.368668 GTTGAGAATATAACTGCCCTATGTACT 58.631 37.037 0.00 0.00 0.00 2.73
2070 2160 9.596308 TTGAGAATATAACTGCCCTATGTACTA 57.404 33.333 0.00 0.00 0.00 1.82
2071 2161 9.769677 TGAGAATATAACTGCCCTATGTACTAT 57.230 33.333 0.00 0.00 0.00 2.12
2081 2171 9.937876 ACTGCCCTATGTACTATATATACATGT 57.062 33.333 18.39 2.69 42.06 3.21
2083 2173 8.638873 TGCCCTATGTACTATATATACATGTGC 58.361 37.037 9.11 17.18 42.06 4.57
2084 2174 8.638873 GCCCTATGTACTATATATACATGTGCA 58.361 37.037 9.11 6.80 42.06 4.57
2138 2228 2.708132 CCCCTCCCCTCCCTCCTA 60.708 72.222 0.00 0.00 0.00 2.94
2139 2229 2.341677 CCCCTCCCCTCCCTCCTAA 61.342 68.421 0.00 0.00 0.00 2.69
2140 2230 1.074395 CCCTCCCCTCCCTCCTAAC 60.074 68.421 0.00 0.00 0.00 2.34
2141 2231 1.074395 CCTCCCCTCCCTCCTAACC 60.074 68.421 0.00 0.00 0.00 2.85
2142 2232 1.074395 CTCCCCTCCCTCCTAACCC 60.074 68.421 0.00 0.00 0.00 4.11
2143 2233 2.039724 CCCCTCCCTCCTAACCCC 60.040 72.222 0.00 0.00 0.00 4.95
2144 2234 2.446036 CCCTCCCTCCTAACCCCG 60.446 72.222 0.00 0.00 0.00 5.73
2145 2235 2.694305 CCTCCCTCCTAACCCCGA 59.306 66.667 0.00 0.00 0.00 5.14
2146 2236 1.457831 CCTCCCTCCTAACCCCGAG 60.458 68.421 0.00 0.00 0.00 4.63
2147 2237 2.042230 TCCCTCCTAACCCCGAGC 60.042 66.667 0.00 0.00 0.00 5.03
2148 2238 3.162154 CCCTCCTAACCCCGAGCC 61.162 72.222 0.00 0.00 0.00 4.70
2149 2239 3.537874 CCTCCTAACCCCGAGCCG 61.538 72.222 0.00 0.00 0.00 5.52
2150 2240 4.222847 CTCCTAACCCCGAGCCGC 62.223 72.222 0.00 0.00 0.00 6.53
2164 2254 4.208686 CCGCCGCTCACCCTCTAC 62.209 72.222 0.00 0.00 0.00 2.59
2165 2255 4.208686 CGCCGCTCACCCTCTACC 62.209 72.222 0.00 0.00 0.00 3.18
2166 2256 3.851128 GCCGCTCACCCTCTACCC 61.851 72.222 0.00 0.00 0.00 3.69
2167 2257 2.363795 CCGCTCACCCTCTACCCA 60.364 66.667 0.00 0.00 0.00 4.51
2168 2258 2.722201 CCGCTCACCCTCTACCCAC 61.722 68.421 0.00 0.00 0.00 4.61
2169 2259 1.982395 CGCTCACCCTCTACCCACA 60.982 63.158 0.00 0.00 0.00 4.17
2170 2260 1.901085 GCTCACCCTCTACCCACAG 59.099 63.158 0.00 0.00 0.00 3.66
2171 2261 1.901085 CTCACCCTCTACCCACAGC 59.099 63.158 0.00 0.00 0.00 4.40
2172 2262 1.612442 TCACCCTCTACCCACAGCC 60.612 63.158 0.00 0.00 0.00 4.85
2173 2263 2.683933 ACCCTCTACCCACAGCCG 60.684 66.667 0.00 0.00 0.00 5.52
2174 2264 4.162690 CCCTCTACCCACAGCCGC 62.163 72.222 0.00 0.00 0.00 6.53
2175 2265 4.162690 CCTCTACCCACAGCCGCC 62.163 72.222 0.00 0.00 0.00 6.13
2176 2266 4.514577 CTCTACCCACAGCCGCCG 62.515 72.222 0.00 0.00 0.00 6.46
2191 2281 2.365901 CCGCCCACCCTAACCCTA 60.366 66.667 0.00 0.00 0.00 3.53
2192 2282 1.996748 CCGCCCACCCTAACCCTAA 60.997 63.158 0.00 0.00 0.00 2.69
2193 2283 1.564483 CCGCCCACCCTAACCCTAAA 61.564 60.000 0.00 0.00 0.00 1.85
2194 2284 0.393402 CGCCCACCCTAACCCTAAAC 60.393 60.000 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.741092 GGCTGGTGAACGTCTGGA 59.259 61.111 0.00 0.00 0.00 3.86
5 6 2.738521 CGGCTGGTGAACGTCTGG 60.739 66.667 0.00 0.00 0.00 3.86
6 7 2.738521 CCGGCTGGTGAACGTCTG 60.739 66.667 2.29 0.00 0.00 3.51
25 26 2.094390 TGTCTACTGTATCACGGGCAAC 60.094 50.000 0.00 0.00 0.00 4.17
26 27 2.094390 GTGTCTACTGTATCACGGGCAA 60.094 50.000 7.26 0.00 0.00 4.52
27 28 1.475280 GTGTCTACTGTATCACGGGCA 59.525 52.381 7.26 0.00 0.00 5.36
28 29 1.533338 CGTGTCTACTGTATCACGGGC 60.533 57.143 24.38 4.03 46.12 6.13
29 30 2.470196 CGTGTCTACTGTATCACGGG 57.530 55.000 24.38 9.17 46.12 5.28
32 33 3.172050 CTGCACGTGTCTACTGTATCAC 58.828 50.000 18.38 10.94 0.00 3.06
33 34 2.817844 ACTGCACGTGTCTACTGTATCA 59.182 45.455 18.38 1.15 0.00 2.15
34 35 3.489180 ACTGCACGTGTCTACTGTATC 57.511 47.619 18.38 0.00 0.00 2.24
35 36 4.259356 TCTACTGCACGTGTCTACTGTAT 58.741 43.478 18.38 0.00 0.00 2.29
36 37 3.667360 TCTACTGCACGTGTCTACTGTA 58.333 45.455 18.38 12.70 0.00 2.74
37 38 2.501261 TCTACTGCACGTGTCTACTGT 58.499 47.619 18.38 12.25 0.00 3.55
38 39 3.766676 ATCTACTGCACGTGTCTACTG 57.233 47.619 18.38 6.81 0.00 2.74
39 40 4.785511 AAATCTACTGCACGTGTCTACT 57.214 40.909 18.38 0.00 0.00 2.57
40 41 6.320171 TCTAAAATCTACTGCACGTGTCTAC 58.680 40.000 18.38 0.09 0.00 2.59
41 42 6.505044 TCTAAAATCTACTGCACGTGTCTA 57.495 37.500 18.38 3.28 0.00 2.59
42 43 5.386958 TCTAAAATCTACTGCACGTGTCT 57.613 39.130 18.38 2.17 0.00 3.41
43 44 7.932120 ATATCTAAAATCTACTGCACGTGTC 57.068 36.000 18.38 10.14 0.00 3.67
44 45 8.718102 AAATATCTAAAATCTACTGCACGTGT 57.282 30.769 18.38 0.00 0.00 4.49
45 46 9.988350 AAAAATATCTAAAATCTACTGCACGTG 57.012 29.630 12.28 12.28 0.00 4.49
46 47 9.988350 CAAAAATATCTAAAATCTACTGCACGT 57.012 29.630 0.00 0.00 0.00 4.49
50 51 9.651718 CGGTCAAAAATATCTAAAATCTACTGC 57.348 33.333 0.00 0.00 0.00 4.40
53 54 9.845305 CGTCGGTCAAAAATATCTAAAATCTAC 57.155 33.333 0.00 0.00 0.00 2.59
54 55 8.545420 GCGTCGGTCAAAAATATCTAAAATCTA 58.455 33.333 0.00 0.00 0.00 1.98
55 56 7.407337 GCGTCGGTCAAAAATATCTAAAATCT 58.593 34.615 0.00 0.00 0.00 2.40
56 57 6.353582 CGCGTCGGTCAAAAATATCTAAAATC 59.646 38.462 0.00 0.00 0.00 2.17
57 58 6.036300 TCGCGTCGGTCAAAAATATCTAAAAT 59.964 34.615 5.77 0.00 0.00 1.82
58 59 5.348179 TCGCGTCGGTCAAAAATATCTAAAA 59.652 36.000 5.77 0.00 0.00 1.52
59 60 4.863689 TCGCGTCGGTCAAAAATATCTAAA 59.136 37.500 5.77 0.00 0.00 1.85
60 61 4.422840 TCGCGTCGGTCAAAAATATCTAA 58.577 39.130 5.77 0.00 0.00 2.10
61 62 4.031418 TCGCGTCGGTCAAAAATATCTA 57.969 40.909 5.77 0.00 0.00 1.98
62 63 2.883574 TCGCGTCGGTCAAAAATATCT 58.116 42.857 5.77 0.00 0.00 1.98
63 64 3.644805 TTCGCGTCGGTCAAAAATATC 57.355 42.857 5.77 0.00 0.00 1.63
64 65 4.153256 GTTTTCGCGTCGGTCAAAAATAT 58.847 39.130 5.77 0.00 0.00 1.28
65 66 3.543670 GTTTTCGCGTCGGTCAAAAATA 58.456 40.909 5.77 0.00 0.00 1.40
66 67 2.377880 GTTTTCGCGTCGGTCAAAAAT 58.622 42.857 5.77 0.00 0.00 1.82
67 68 1.812662 GTTTTCGCGTCGGTCAAAAA 58.187 45.000 5.77 0.16 0.00 1.94
68 69 0.315220 CGTTTTCGCGTCGGTCAAAA 60.315 50.000 5.77 0.98 36.22 2.44
69 70 1.144565 TCGTTTTCGCGTCGGTCAAA 61.145 50.000 5.77 0.00 43.73 2.69
70 71 1.144565 TTCGTTTTCGCGTCGGTCAA 61.145 50.000 5.77 0.00 43.73 3.18
71 72 1.144565 TTTCGTTTTCGCGTCGGTCA 61.145 50.000 5.77 0.00 43.73 4.02
72 73 0.043138 TTTTCGTTTTCGCGTCGGTC 60.043 50.000 5.77 0.00 43.73 4.79
73 74 0.373024 TTTTTCGTTTTCGCGTCGGT 59.627 45.000 5.77 0.00 43.73 4.69
74 75 0.760219 GTTTTTCGTTTTCGCGTCGG 59.240 50.000 5.77 0.00 43.73 4.79
75 76 0.760219 GGTTTTTCGTTTTCGCGTCG 59.240 50.000 5.77 7.67 43.73 5.12
76 77 1.812662 TGGTTTTTCGTTTTCGCGTC 58.187 45.000 5.77 0.00 43.73 5.19
77 78 2.259505 TTGGTTTTTCGTTTTCGCGT 57.740 40.000 5.77 0.00 43.73 6.01
78 79 3.827281 ATTTGGTTTTTCGTTTTCGCG 57.173 38.095 0.00 0.00 43.73 5.87
79 80 5.525819 CGATATTTGGTTTTTCGTTTTCGC 58.474 37.500 0.00 0.00 43.73 4.70
80 81 5.442260 GGCGATATTTGGTTTTTCGTTTTCG 60.442 40.000 0.00 0.00 45.64 3.46
81 82 5.442260 CGGCGATATTTGGTTTTTCGTTTTC 60.442 40.000 0.00 0.00 32.65 2.29
82 83 4.383351 CGGCGATATTTGGTTTTTCGTTTT 59.617 37.500 0.00 0.00 32.65 2.43
83 84 3.915569 CGGCGATATTTGGTTTTTCGTTT 59.084 39.130 0.00 0.00 32.65 3.60
84 85 3.058085 ACGGCGATATTTGGTTTTTCGTT 60.058 39.130 16.62 0.00 32.65 3.85
85 86 2.485038 ACGGCGATATTTGGTTTTTCGT 59.515 40.909 16.62 0.00 32.65 3.85
86 87 3.095738 GACGGCGATATTTGGTTTTTCG 58.904 45.455 16.62 0.00 0.00 3.46
87 88 3.095738 CGACGGCGATATTTGGTTTTTC 58.904 45.455 16.62 0.00 40.82 2.29
88 89 2.729778 GCGACGGCGATATTTGGTTTTT 60.730 45.455 18.90 0.00 40.82 1.94
89 90 1.202098 GCGACGGCGATATTTGGTTTT 60.202 47.619 18.90 0.00 40.82 2.43
90 91 0.375803 GCGACGGCGATATTTGGTTT 59.624 50.000 18.90 0.00 40.82 3.27
91 92 1.433837 GGCGACGGCGATATTTGGTT 61.434 55.000 18.90 0.00 41.24 3.67
92 93 1.885850 GGCGACGGCGATATTTGGT 60.886 57.895 18.90 0.00 41.24 3.67
93 94 2.935955 GGCGACGGCGATATTTGG 59.064 61.111 18.90 0.00 41.24 3.28
105 106 1.516161 GGTTATTATTCCCCGGCGAC 58.484 55.000 9.30 0.00 0.00 5.19
106 107 0.033781 CGGTTATTATTCCCCGGCGA 59.966 55.000 9.30 0.00 36.84 5.54
107 108 1.571215 GCGGTTATTATTCCCCGGCG 61.571 60.000 0.00 0.00 40.74 6.46
108 109 1.571215 CGCGGTTATTATTCCCCGGC 61.571 60.000 0.00 0.00 40.74 6.13
109 110 0.033781 TCGCGGTTATTATTCCCCGG 59.966 55.000 6.13 0.00 40.74 5.73
110 111 1.868469 TTCGCGGTTATTATTCCCCG 58.132 50.000 6.13 0.00 43.22 5.73
111 112 3.671716 AGATTCGCGGTTATTATTCCCC 58.328 45.455 6.13 0.00 0.00 4.81
112 113 5.684550 AAAGATTCGCGGTTATTATTCCC 57.315 39.130 6.13 0.00 0.00 3.97
250 253 6.122964 AGGATATAAAAGGGCTGTCAAACTC 58.877 40.000 0.00 0.00 0.00 3.01
251 254 6.079712 AGGATATAAAAGGGCTGTCAAACT 57.920 37.500 0.00 0.00 0.00 2.66
252 255 7.054751 ACTAGGATATAAAAGGGCTGTCAAAC 58.945 38.462 0.00 0.00 0.00 2.93
275 278 7.287810 ACCAATAGTACTCCTGTTTTTGAACT 58.712 34.615 0.00 0.00 0.00 3.01
281 284 6.653740 GTGCTAACCAATAGTACTCCTGTTTT 59.346 38.462 0.00 0.00 42.17 2.43
282 285 6.171213 GTGCTAACCAATAGTACTCCTGTTT 58.829 40.000 0.00 0.00 42.17 2.83
283 286 5.623824 CGTGCTAACCAATAGTACTCCTGTT 60.624 44.000 0.00 2.04 42.97 3.16
284 287 4.142227 CGTGCTAACCAATAGTACTCCTGT 60.142 45.833 0.00 0.00 42.97 4.00
285 288 4.142227 ACGTGCTAACCAATAGTACTCCTG 60.142 45.833 0.00 0.00 42.97 3.86
287 290 4.357996 GACGTGCTAACCAATAGTACTCC 58.642 47.826 0.00 0.00 42.97 3.85
288 291 4.033684 CGACGTGCTAACCAATAGTACTC 58.966 47.826 0.00 0.00 42.97 2.59
289 292 3.441572 ACGACGTGCTAACCAATAGTACT 59.558 43.478 0.00 0.00 42.97 2.73
290 293 3.545078 CACGACGTGCTAACCAATAGTAC 59.455 47.826 16.06 0.00 42.06 2.73
291 294 3.761657 CACGACGTGCTAACCAATAGTA 58.238 45.455 16.06 0.00 33.87 1.82
292 295 2.602878 CACGACGTGCTAACCAATAGT 58.397 47.619 16.06 0.00 33.87 2.12
304 307 1.398739 AGAGATCTGTAGCACGACGTG 59.601 52.381 23.43 23.43 36.51 4.49
305 308 1.666700 GAGAGATCTGTAGCACGACGT 59.333 52.381 0.00 0.00 0.00 4.34
306 309 1.937223 AGAGAGATCTGTAGCACGACG 59.063 52.381 0.00 0.00 0.00 5.12
307 310 4.153475 GGATAGAGAGATCTGTAGCACGAC 59.847 50.000 0.00 0.00 30.77 4.34
308 311 4.041075 AGGATAGAGAGATCTGTAGCACGA 59.959 45.833 0.00 0.00 30.77 4.35
309 312 4.154015 CAGGATAGAGAGATCTGTAGCACG 59.846 50.000 0.00 0.00 30.77 5.34
310 313 5.070001 ACAGGATAGAGAGATCTGTAGCAC 58.930 45.833 0.00 0.00 30.77 4.40
311 314 5.163152 TGACAGGATAGAGAGATCTGTAGCA 60.163 44.000 0.00 0.00 30.77 3.49
312 315 5.312895 TGACAGGATAGAGAGATCTGTAGC 58.687 45.833 0.00 0.00 0.00 3.58
313 316 5.412594 GCTGACAGGATAGAGAGATCTGTAG 59.587 48.000 0.00 0.00 0.00 2.74
314 317 5.073008 AGCTGACAGGATAGAGAGATCTGTA 59.927 44.000 0.00 0.00 0.00 2.74
315 318 4.141181 AGCTGACAGGATAGAGAGATCTGT 60.141 45.833 0.00 0.00 0.00 3.41
316 319 4.401022 AGCTGACAGGATAGAGAGATCTG 58.599 47.826 0.00 0.00 0.00 2.90
317 320 4.104579 TGAGCTGACAGGATAGAGAGATCT 59.895 45.833 4.26 0.00 0.00 2.75
318 321 4.397420 TGAGCTGACAGGATAGAGAGATC 58.603 47.826 4.26 0.00 0.00 2.75
319 322 4.141181 ACTGAGCTGACAGGATAGAGAGAT 60.141 45.833 4.26 0.00 41.59 2.75
320 323 3.201930 ACTGAGCTGACAGGATAGAGAGA 59.798 47.826 4.26 0.00 41.59 3.10
321 324 3.554934 ACTGAGCTGACAGGATAGAGAG 58.445 50.000 4.26 0.00 41.59 3.20
322 325 3.660970 ACTGAGCTGACAGGATAGAGA 57.339 47.619 4.26 0.00 41.59 3.10
323 326 3.698539 TCAACTGAGCTGACAGGATAGAG 59.301 47.826 4.26 0.00 41.59 2.43
324 327 3.698539 CTCAACTGAGCTGACAGGATAGA 59.301 47.826 4.26 0.00 41.59 1.98
325 328 3.446873 ACTCAACTGAGCTGACAGGATAG 59.553 47.826 4.26 3.83 45.79 2.08
326 329 3.194329 CACTCAACTGAGCTGACAGGATA 59.806 47.826 4.26 0.00 45.79 2.59
327 330 2.028294 CACTCAACTGAGCTGACAGGAT 60.028 50.000 4.26 0.00 45.79 3.24
328 331 1.342496 CACTCAACTGAGCTGACAGGA 59.658 52.381 4.26 0.00 45.79 3.86
369 372 1.133976 GCCACCTAGCTTGGATGTGAT 60.134 52.381 21.63 0.00 36.02 3.06
370 373 0.253044 GCCACCTAGCTTGGATGTGA 59.747 55.000 21.63 0.00 36.02 3.58
371 374 1.091771 CGCCACCTAGCTTGGATGTG 61.092 60.000 21.63 12.98 36.02 3.21
372 375 1.221840 CGCCACCTAGCTTGGATGT 59.778 57.895 21.63 0.00 36.02 3.06
373 376 1.524621 CCGCCACCTAGCTTGGATG 60.525 63.158 21.63 14.10 36.02 3.51
450 460 0.031585 TCCGATTTATGTCTCGCCGG 59.968 55.000 0.00 0.00 37.08 6.13
478 488 1.128507 CAACATGTTGTGGATCGGTCG 59.871 52.381 27.08 0.35 35.92 4.79
479 489 1.135689 GCAACATGTTGTGGATCGGTC 60.136 52.381 33.01 14.17 42.31 4.79
480 490 0.881118 GCAACATGTTGTGGATCGGT 59.119 50.000 33.01 0.00 42.31 4.69
481 491 0.880441 TGCAACATGTTGTGGATCGG 59.120 50.000 33.01 11.44 42.31 4.18
485 495 2.231721 CCATGATGCAACATGTTGTGGA 59.768 45.455 33.01 20.65 44.00 4.02
489 499 3.861276 ACTCCATGATGCAACATGTTG 57.139 42.857 30.20 30.20 44.00 3.33
498 508 4.618460 CGTACAGGGTATACTCCATGATGC 60.618 50.000 0.00 0.00 41.12 3.91
513 523 0.179134 GTAGCTGCAGTCGTACAGGG 60.179 60.000 16.64 0.00 34.38 4.45
519 530 2.567049 GGACGTAGCTGCAGTCGT 59.433 61.111 24.64 24.64 39.21 4.34
520 531 2.577112 CGGACGTAGCTGCAGTCG 60.577 66.667 16.64 18.77 35.87 4.18
521 532 2.202623 CCGGACGTAGCTGCAGTC 60.203 66.667 16.64 14.81 0.00 3.51
575 586 1.271127 TGGCAGCTACACATGGCCTA 61.271 55.000 3.32 0.00 44.85 3.93
588 615 1.493950 CGACCGATCAATCTGGCAGC 61.494 60.000 10.34 0.00 0.00 5.25
589 616 0.103026 TCGACCGATCAATCTGGCAG 59.897 55.000 8.58 8.58 0.00 4.85
591 618 1.218230 GCTCGACCGATCAATCTGGC 61.218 60.000 0.00 0.00 0.00 4.85
594 621 0.309302 CTCGCTCGACCGATCAATCT 59.691 55.000 2.84 0.00 36.54 2.40
595 622 1.272114 GCTCGCTCGACCGATCAATC 61.272 60.000 2.84 0.00 36.54 2.67
596 623 1.299468 GCTCGCTCGACCGATCAAT 60.299 57.895 2.84 0.00 36.54 2.57
597 624 2.102357 GCTCGCTCGACCGATCAA 59.898 61.111 2.84 0.00 36.54 2.57
598 625 4.237809 CGCTCGCTCGACCGATCA 62.238 66.667 2.84 0.00 36.54 2.92
602 629 0.660595 ATTAATCGCTCGCTCGACCG 60.661 55.000 0.00 0.00 41.62 4.79
603 630 1.452399 GAATTAATCGCTCGCTCGACC 59.548 52.381 1.16 0.00 41.62 4.79
604 631 1.452399 GGAATTAATCGCTCGCTCGAC 59.548 52.381 1.16 0.00 41.62 4.20
605 632 1.066454 TGGAATTAATCGCTCGCTCGA 59.934 47.619 1.62 1.62 43.09 4.04
606 633 1.190323 GTGGAATTAATCGCTCGCTCG 59.810 52.381 0.00 0.00 0.00 5.03
607 634 1.527311 GGTGGAATTAATCGCTCGCTC 59.473 52.381 0.00 0.00 0.00 5.03
608 635 1.134521 TGGTGGAATTAATCGCTCGCT 60.135 47.619 0.00 0.00 0.00 4.93
609 636 1.003866 GTGGTGGAATTAATCGCTCGC 60.004 52.381 0.00 0.00 0.00 5.03
610 637 1.257936 CGTGGTGGAATTAATCGCTCG 59.742 52.381 0.00 0.00 0.00 5.03
614 641 2.867975 GGTACCGTGGTGGAATTAATCG 59.132 50.000 0.72 0.00 42.00 3.34
627 654 4.688419 ACGCGACGTGGTACCGTG 62.688 66.667 15.93 4.41 41.98 4.94
628 655 4.389576 GACGCGACGTGGTACCGT 62.390 66.667 15.93 4.43 41.37 4.83
643 681 2.510238 CGGGCTAGCAGCTGTGAC 60.510 66.667 18.24 8.16 41.99 3.67
669 707 2.279120 CCGCTCTCAGTCCATCGC 60.279 66.667 0.00 0.00 0.00 4.58
674 712 1.374758 CAACCACCGCTCTCAGTCC 60.375 63.158 0.00 0.00 0.00 3.85
809 847 1.723003 GTAGCGTTAACCAACTCCGTG 59.277 52.381 0.00 0.00 32.09 4.94
868 909 1.893808 GCCGCGATTGATGGATGGT 60.894 57.895 8.23 0.00 0.00 3.55
994 1069 2.476619 GCTCCAATATGAACATCGTCGG 59.523 50.000 0.00 0.00 0.00 4.79
1030 1105 2.979676 CAGCAGCGTGAAGGGCAA 60.980 61.111 0.00 0.00 0.00 4.52
1083 1158 4.218578 AGGATCCGCTGCAGCTCG 62.219 66.667 34.22 24.03 39.32 5.03
1213 1288 4.457496 AGAGCGACGCATGGTGGG 62.457 66.667 23.70 0.00 36.28 4.61
1284 1359 4.468643 CAAAAATAAAACTAGGACGCGCA 58.531 39.130 5.73 0.00 0.00 6.09
1300 1375 1.199097 CAACTAGGACGCGCCAAAAAT 59.801 47.619 19.30 3.54 40.02 1.82
1304 1379 1.666553 CACAACTAGGACGCGCCAA 60.667 57.895 19.30 0.00 40.02 4.52
1327 1402 6.264067 CCTTTGATCCTTTCTTGAAGAACAGT 59.736 38.462 7.21 0.00 37.57 3.55
1368 1443 3.952535 TCGCTCAAAAGCTCAAAAGAAC 58.047 40.909 0.00 0.00 46.91 3.01
1400 1479 6.019075 GGAACTCAAAATCAAAAGGGAAAACG 60.019 38.462 0.00 0.00 0.00 3.60
1421 1500 4.137543 TCAGAGGAAAGCAAAAGAGGAAC 58.862 43.478 0.00 0.00 0.00 3.62
1430 1509 3.701205 TGCATACTCAGAGGAAAGCAA 57.299 42.857 10.04 0.00 0.00 3.91
1433 1514 4.213694 GCATGATGCATACTCAGAGGAAAG 59.786 45.833 13.36 0.00 44.26 2.62
1466 1547 3.003068 GGATCATCTCCTCAACGCAATTG 59.997 47.826 0.00 0.00 41.29 2.32
1488 1569 0.035036 AGATGCGATCCCTGCTCATG 59.965 55.000 0.00 0.00 0.00 3.07
1493 1574 0.319727 CTCTCAGATGCGATCCCTGC 60.320 60.000 0.00 0.00 0.00 4.85
1511 1592 8.174733 ACAAACATCTGAAAACAAGATCATCT 57.825 30.769 0.00 0.00 31.92 2.90
1595 1680 0.876342 GACCCCGAATCTCGCATGAC 60.876 60.000 0.00 0.00 38.82 3.06
1683 1768 3.364964 GCTTTGATTGGGTGTACGACAAG 60.365 47.826 0.00 0.00 0.00 3.16
1695 1780 5.560966 ATTTAGTACCGTGCTTTGATTGG 57.439 39.130 0.00 0.00 0.00 3.16
1703 1788 6.113411 AGCATAAGAAATTTAGTACCGTGCT 58.887 36.000 0.00 0.00 33.64 4.40
1704 1789 6.359480 AGCATAAGAAATTTAGTACCGTGC 57.641 37.500 0.00 0.00 0.00 5.34
1706 1791 8.975439 CGAATAGCATAAGAAATTTAGTACCGT 58.025 33.333 0.00 0.00 0.00 4.83
1732 1822 6.096564 AGGTAAGTAATACATAGCTATCCGGC 59.903 42.308 2.34 0.00 36.14 6.13
1787 1877 4.839121 TGGTTTTATCCGTACATGCTCTT 58.161 39.130 0.00 0.00 0.00 2.85
1788 1878 4.481368 TGGTTTTATCCGTACATGCTCT 57.519 40.909 0.00 0.00 0.00 4.09
1789 1879 6.220930 TCTATGGTTTTATCCGTACATGCTC 58.779 40.000 0.00 0.00 0.00 4.26
1790 1880 6.169557 TCTATGGTTTTATCCGTACATGCT 57.830 37.500 0.00 0.00 0.00 3.79
1791 1881 6.854496 TTCTATGGTTTTATCCGTACATGC 57.146 37.500 0.00 0.00 0.00 4.06
1792 1882 8.433421 ACTTTCTATGGTTTTATCCGTACATG 57.567 34.615 0.00 0.00 0.00 3.21
1844 1934 9.265862 GGACAGAGGGAGTACTATATAGTAGTA 57.734 40.741 24.13 5.19 41.28 1.82
1845 1935 7.182568 GGGACAGAGGGAGTACTATATAGTAGT 59.817 44.444 24.27 24.27 43.25 2.73
1846 1936 7.182387 TGGGACAGAGGGAGTACTATATAGTAG 59.818 44.444 20.62 10.37 39.29 2.57
1847 1937 7.027502 TGGGACAGAGGGAGTACTATATAGTA 58.972 42.308 17.03 17.03 37.73 1.82
1848 1938 5.856160 TGGGACAGAGGGAGTACTATATAGT 59.144 44.000 19.07 19.07 40.24 2.12
1849 1939 6.390048 TGGGACAGAGGGAGTACTATATAG 57.610 45.833 8.27 8.27 0.00 1.31
1850 1940 6.791847 TTGGGACAGAGGGAGTACTATATA 57.208 41.667 0.00 0.00 42.39 0.86
1851 1941 5.681494 TTGGGACAGAGGGAGTACTATAT 57.319 43.478 0.00 0.00 42.39 0.86
1852 1942 5.476950 TTTGGGACAGAGGGAGTACTATA 57.523 43.478 0.00 0.00 42.39 1.31
1853 1943 4.348020 TTTGGGACAGAGGGAGTACTAT 57.652 45.455 0.00 0.00 42.39 2.12
1854 1944 3.839323 TTTGGGACAGAGGGAGTACTA 57.161 47.619 0.00 0.00 42.39 1.82
1855 1945 2.715763 TTTGGGACAGAGGGAGTACT 57.284 50.000 0.00 0.00 42.39 2.73
1856 1946 4.470304 AGTATTTTGGGACAGAGGGAGTAC 59.530 45.833 0.00 0.00 42.39 2.73
1857 1947 4.695606 AGTATTTTGGGACAGAGGGAGTA 58.304 43.478 0.00 0.00 42.39 2.59
1858 1948 3.532102 AGTATTTTGGGACAGAGGGAGT 58.468 45.455 0.00 0.00 42.39 3.85
1859 1949 4.263506 ACAAGTATTTTGGGACAGAGGGAG 60.264 45.833 0.00 0.00 42.39 4.30
1860 1950 3.655777 ACAAGTATTTTGGGACAGAGGGA 59.344 43.478 0.00 0.00 42.39 4.20
1861 1951 4.010349 GACAAGTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
1862 1952 3.684788 CGACAAGTATTTTGGGACAGAGG 59.315 47.826 0.00 0.00 42.39 3.69
1863 1953 3.684788 CCGACAAGTATTTTGGGACAGAG 59.315 47.826 0.00 0.00 42.39 3.35
1864 1954 3.325425 TCCGACAAGTATTTTGGGACAGA 59.675 43.478 0.00 0.00 42.39 3.41
1865 1955 3.670625 TCCGACAAGTATTTTGGGACAG 58.329 45.455 0.00 0.00 42.39 3.51
1866 1956 3.558321 CCTCCGACAAGTATTTTGGGACA 60.558 47.826 0.00 0.00 0.00 4.02
1867 1957 3.007635 CCTCCGACAAGTATTTTGGGAC 58.992 50.000 0.00 0.00 0.00 4.46
1868 1958 2.907696 TCCTCCGACAAGTATTTTGGGA 59.092 45.455 0.00 0.00 0.00 4.37
1869 1959 3.343941 TCCTCCGACAAGTATTTTGGG 57.656 47.619 0.00 0.00 0.00 4.12
1870 1960 4.096382 CCATTCCTCCGACAAGTATTTTGG 59.904 45.833 0.00 0.00 0.00 3.28
1871 1961 4.941263 TCCATTCCTCCGACAAGTATTTTG 59.059 41.667 0.00 0.00 0.00 2.44
1872 1962 5.174037 TCCATTCCTCCGACAAGTATTTT 57.826 39.130 0.00 0.00 0.00 1.82
1873 1963 4.837093 TCCATTCCTCCGACAAGTATTT 57.163 40.909 0.00 0.00 0.00 1.40
1874 1964 4.164221 ACATCCATTCCTCCGACAAGTATT 59.836 41.667 0.00 0.00 0.00 1.89
1875 1965 3.711704 ACATCCATTCCTCCGACAAGTAT 59.288 43.478 0.00 0.00 0.00 2.12
1876 1966 3.104512 ACATCCATTCCTCCGACAAGTA 58.895 45.455 0.00 0.00 0.00 2.24
1877 1967 1.909302 ACATCCATTCCTCCGACAAGT 59.091 47.619 0.00 0.00 0.00 3.16
1878 1968 2.698855 ACATCCATTCCTCCGACAAG 57.301 50.000 0.00 0.00 0.00 3.16
1879 1969 3.967326 AGATACATCCATTCCTCCGACAA 59.033 43.478 0.00 0.00 0.00 3.18
1880 1970 3.576861 AGATACATCCATTCCTCCGACA 58.423 45.455 0.00 0.00 0.00 4.35
1881 1971 5.723672 TTAGATACATCCATTCCTCCGAC 57.276 43.478 0.00 0.00 0.00 4.79
1882 1972 5.278808 CGTTTAGATACATCCATTCCTCCGA 60.279 44.000 0.00 0.00 0.00 4.55
1883 1973 4.923871 CGTTTAGATACATCCATTCCTCCG 59.076 45.833 0.00 0.00 0.00 4.63
1884 1974 5.855045 ACGTTTAGATACATCCATTCCTCC 58.145 41.667 0.00 0.00 0.00 4.30
1885 1975 9.490379 AAATACGTTTAGATACATCCATTCCTC 57.510 33.333 0.00 0.00 0.00 3.71
1886 1976 9.847224 AAAATACGTTTAGATACATCCATTCCT 57.153 29.630 0.00 0.00 0.00 3.36
1913 2003 8.952278 TGCATAAAACCGAATGTATCTAAAACT 58.048 29.630 0.00 0.00 0.00 2.66
1914 2004 9.730420 ATGCATAAAACCGAATGTATCTAAAAC 57.270 29.630 0.00 0.00 0.00 2.43
1917 2007 9.944663 GAAATGCATAAAACCGAATGTATCTAA 57.055 29.630 0.00 0.00 29.57 2.10
1918 2008 9.337396 AGAAATGCATAAAACCGAATGTATCTA 57.663 29.630 0.00 0.00 29.57 1.98
1919 2009 8.225603 AGAAATGCATAAAACCGAATGTATCT 57.774 30.769 0.00 0.00 29.57 1.98
1920 2010 7.591426 GGAGAAATGCATAAAACCGAATGTATC 59.409 37.037 0.00 0.00 29.57 2.24
1921 2011 7.425606 GGAGAAATGCATAAAACCGAATGTAT 58.574 34.615 0.00 0.00 30.86 2.29
1922 2012 6.457663 CGGAGAAATGCATAAAACCGAATGTA 60.458 38.462 22.01 0.00 41.30 2.29
1923 2013 5.650543 GGAGAAATGCATAAAACCGAATGT 58.349 37.500 0.00 0.00 0.00 2.71
1924 2014 4.734854 CGGAGAAATGCATAAAACCGAATG 59.265 41.667 22.01 2.09 41.30 2.67
1925 2015 4.638421 TCGGAGAAATGCATAAAACCGAAT 59.362 37.500 24.73 0.00 43.79 3.34
1926 2016 4.004314 TCGGAGAAATGCATAAAACCGAA 58.996 39.130 24.73 14.41 43.79 4.30
1927 2017 3.372822 GTCGGAGAAATGCATAAAACCGA 59.627 43.478 23.81 23.81 44.37 4.69
1928 2018 3.126171 TGTCGGAGAAATGCATAAAACCG 59.874 43.478 21.09 21.09 39.69 4.44
1929 2019 4.695217 TGTCGGAGAAATGCATAAAACC 57.305 40.909 0.00 1.15 39.69 3.27
1930 2020 8.856490 ATATTTGTCGGAGAAATGCATAAAAC 57.144 30.769 19.84 0.00 39.69 2.43
1931 2021 9.868277 AAATATTTGTCGGAGAAATGCATAAAA 57.132 25.926 19.84 2.25 39.69 1.52
1932 2022 9.868277 AAAATATTTGTCGGAGAAATGCATAAA 57.132 25.926 19.84 2.88 39.69 1.40
1933 2023 9.299963 CAAAATATTTGTCGGAGAAATGCATAA 57.700 29.630 19.84 3.51 39.69 1.90
1934 2024 7.920151 CCAAAATATTTGTCGGAGAAATGCATA 59.080 33.333 19.84 3.83 39.69 3.14
1935 2025 6.757947 CCAAAATATTTGTCGGAGAAATGCAT 59.242 34.615 19.84 6.69 39.69 3.96
1936 2026 6.098679 CCAAAATATTTGTCGGAGAAATGCA 58.901 36.000 19.84 4.79 39.69 3.96
1937 2027 5.519927 CCCAAAATATTTGTCGGAGAAATGC 59.480 40.000 19.84 0.00 39.69 3.56
1938 2028 6.751888 GTCCCAAAATATTTGTCGGAGAAATG 59.248 38.462 19.84 7.14 39.69 2.32
1939 2029 6.404293 CGTCCCAAAATATTTGTCGGAGAAAT 60.404 38.462 16.10 16.10 39.69 2.17
1940 2030 5.106475 CGTCCCAAAATATTTGTCGGAGAAA 60.106 40.000 0.39 2.59 39.69 2.52
1941 2031 4.393680 CGTCCCAAAATATTTGTCGGAGAA 59.606 41.667 0.39 0.00 39.69 2.87
1942 2032 3.936453 CGTCCCAAAATATTTGTCGGAGA 59.064 43.478 0.39 1.31 0.00 3.71
1943 2033 3.064820 CCGTCCCAAAATATTTGTCGGAG 59.935 47.826 13.62 8.00 38.03 4.63
1944 2034 3.011119 CCGTCCCAAAATATTTGTCGGA 58.989 45.455 13.62 10.39 38.03 4.55
1945 2035 3.011119 TCCGTCCCAAAATATTTGTCGG 58.989 45.455 13.02 13.02 37.29 4.79
1946 2036 3.064820 CCTCCGTCCCAAAATATTTGTCG 59.935 47.826 0.39 0.00 0.00 4.35
1947 2037 3.380320 CCCTCCGTCCCAAAATATTTGTC 59.620 47.826 0.39 0.00 0.00 3.18
1948 2038 3.010808 TCCCTCCGTCCCAAAATATTTGT 59.989 43.478 0.39 0.00 0.00 2.83
1949 2039 3.626930 TCCCTCCGTCCCAAAATATTTG 58.373 45.455 0.39 0.00 0.00 2.32
1950 2040 3.268595 ACTCCCTCCGTCCCAAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
1951 2041 2.850568 ACTCCCTCCGTCCCAAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
1952 2042 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
1953 2043 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1954 2044 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1955 2045 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1956 2046 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
1957 2047 0.324091 GAGTACTCCCTCCGTCCCAA 60.324 60.000 12.13 0.00 0.00 4.12
1958 2048 1.305623 GAGTACTCCCTCCGTCCCA 59.694 63.158 12.13 0.00 0.00 4.37
1959 2049 1.455402 GGAGTACTCCCTCCGTCCC 60.455 68.421 28.87 3.11 43.94 4.46
1960 2050 4.256462 GGAGTACTCCCTCCGTCC 57.744 66.667 28.87 4.17 43.94 4.79
1979 2069 8.139350 CGTGGTAAATACATATACTCAACAGGA 58.861 37.037 0.00 0.00 0.00 3.86
1980 2070 7.924412 ACGTGGTAAATACATATACTCAACAGG 59.076 37.037 0.00 0.00 0.00 4.00
1981 2071 8.752254 CACGTGGTAAATACATATACTCAACAG 58.248 37.037 7.95 0.00 0.00 3.16
1982 2072 8.252417 ACACGTGGTAAATACATATACTCAACA 58.748 33.333 21.57 0.00 0.00 3.33
1983 2073 8.638685 ACACGTGGTAAATACATATACTCAAC 57.361 34.615 21.57 0.00 0.00 3.18
1990 2080 9.826574 ACAAGAATACACGTGGTAAATACATAT 57.173 29.630 21.57 2.07 35.14 1.78
1992 2082 9.090692 GTACAAGAATACACGTGGTAAATACAT 57.909 33.333 21.57 0.00 35.14 2.29
1993 2083 8.306038 AGTACAAGAATACACGTGGTAAATACA 58.694 33.333 21.57 0.00 35.14 2.29
1994 2084 8.693542 AGTACAAGAATACACGTGGTAAATAC 57.306 34.615 21.57 11.05 35.14 1.89
1995 2085 7.975616 GGAGTACAAGAATACACGTGGTAAATA 59.024 37.037 21.57 2.59 35.14 1.40
1996 2086 6.815142 GGAGTACAAGAATACACGTGGTAAAT 59.185 38.462 21.57 4.84 35.14 1.40
1997 2087 6.158598 GGAGTACAAGAATACACGTGGTAAA 58.841 40.000 21.57 2.38 35.14 2.01
1998 2088 5.243507 TGGAGTACAAGAATACACGTGGTAA 59.756 40.000 21.57 5.16 35.14 2.85
1999 2089 4.766373 TGGAGTACAAGAATACACGTGGTA 59.234 41.667 21.57 10.20 36.16 3.25
2000 2090 3.575256 TGGAGTACAAGAATACACGTGGT 59.425 43.478 21.57 8.52 0.00 4.16
2001 2091 4.182693 TGGAGTACAAGAATACACGTGG 57.817 45.455 21.57 2.04 0.00 4.94
2013 2103 3.858135 AGGAGGAAGACTTGGAGTACAA 58.142 45.455 0.00 0.00 37.55 2.41
2014 2104 3.544698 AGGAGGAAGACTTGGAGTACA 57.455 47.619 0.00 0.00 0.00 2.90
2015 2105 3.579151 ACAAGGAGGAAGACTTGGAGTAC 59.421 47.826 8.97 0.00 46.29 2.73
2016 2106 3.578716 CACAAGGAGGAAGACTTGGAGTA 59.421 47.826 8.97 0.00 46.29 2.59
2017 2107 2.370189 CACAAGGAGGAAGACTTGGAGT 59.630 50.000 8.97 0.00 46.29 3.85
2018 2108 2.370189 ACACAAGGAGGAAGACTTGGAG 59.630 50.000 8.97 4.13 46.29 3.86
2019 2109 2.408565 ACACAAGGAGGAAGACTTGGA 58.591 47.619 8.97 0.00 46.29 3.53
2020 2110 2.938956 ACACAAGGAGGAAGACTTGG 57.061 50.000 8.97 1.66 46.29 3.61
2022 2112 6.497259 TCAACTATACACAAGGAGGAAGACTT 59.503 38.462 0.00 0.00 0.00 3.01
2023 2113 6.017192 TCAACTATACACAAGGAGGAAGACT 58.983 40.000 0.00 0.00 0.00 3.24
2024 2114 6.153000 TCTCAACTATACACAAGGAGGAAGAC 59.847 42.308 0.00 0.00 0.00 3.01
2025 2115 6.253758 TCTCAACTATACACAAGGAGGAAGA 58.746 40.000 0.00 0.00 0.00 2.87
2026 2116 6.531503 TCTCAACTATACACAAGGAGGAAG 57.468 41.667 0.00 0.00 0.00 3.46
2027 2117 6.928348 TTCTCAACTATACACAAGGAGGAA 57.072 37.500 0.00 0.00 0.00 3.36
2028 2118 8.783660 ATATTCTCAACTATACACAAGGAGGA 57.216 34.615 0.00 0.00 0.00 3.71
2034 2124 9.542462 GGCAGTTATATTCTCAACTATACACAA 57.458 33.333 0.00 0.00 33.29 3.33
2035 2125 8.148351 GGGCAGTTATATTCTCAACTATACACA 58.852 37.037 0.00 0.00 33.29 3.72
2036 2126 8.368668 AGGGCAGTTATATTCTCAACTATACAC 58.631 37.037 0.00 0.00 33.29 2.90
2037 2127 8.492415 AGGGCAGTTATATTCTCAACTATACA 57.508 34.615 0.00 0.00 33.29 2.29
2040 2130 9.105844 ACATAGGGCAGTTATATTCTCAACTAT 57.894 33.333 0.00 0.00 33.29 2.12
2041 2131 8.492415 ACATAGGGCAGTTATATTCTCAACTA 57.508 34.615 0.00 0.00 33.29 2.24
2042 2132 7.380423 ACATAGGGCAGTTATATTCTCAACT 57.620 36.000 0.00 0.00 35.38 3.16
2043 2133 8.368668 AGTACATAGGGCAGTTATATTCTCAAC 58.631 37.037 0.00 0.00 0.00 3.18
2044 2134 8.492415 AGTACATAGGGCAGTTATATTCTCAA 57.508 34.615 0.00 0.00 0.00 3.02
2045 2135 9.769677 ATAGTACATAGGGCAGTTATATTCTCA 57.230 33.333 0.00 0.00 0.00 3.27
2055 2145 9.937876 ACATGTATATATAGTACATAGGGCAGT 57.062 33.333 0.00 4.53 39.95 4.40
2057 2147 8.638873 GCACATGTATATATAGTACATAGGGCA 58.361 37.037 19.11 0.00 39.95 5.36
2058 2148 8.638873 TGCACATGTATATATAGTACATAGGGC 58.361 37.037 18.25 18.25 39.95 5.19
2065 2155 9.447040 CGTGGTATGCACATGTATATATAGTAC 57.553 37.037 0.00 0.00 0.00 2.73
2066 2156 8.132995 GCGTGGTATGCACATGTATATATAGTA 58.867 37.037 0.00 0.00 0.00 1.82
2067 2157 6.978659 GCGTGGTATGCACATGTATATATAGT 59.021 38.462 0.00 0.00 0.00 2.12
2068 2158 6.420903 GGCGTGGTATGCACATGTATATATAG 59.579 42.308 0.00 0.00 0.00 1.31
2069 2159 6.277605 GGCGTGGTATGCACATGTATATATA 58.722 40.000 0.00 0.00 0.00 0.86
2070 2160 5.116180 GGCGTGGTATGCACATGTATATAT 58.884 41.667 0.00 0.00 0.00 0.86
2071 2161 4.500127 GGCGTGGTATGCACATGTATATA 58.500 43.478 0.00 0.00 0.00 0.86
2072 2162 3.334691 GGCGTGGTATGCACATGTATAT 58.665 45.455 0.00 0.00 0.00 0.86
2073 2163 2.761559 GGCGTGGTATGCACATGTATA 58.238 47.619 0.00 0.00 0.00 1.47
2074 2164 1.593196 GGCGTGGTATGCACATGTAT 58.407 50.000 0.00 0.00 0.00 2.29
2075 2165 0.808060 CGGCGTGGTATGCACATGTA 60.808 55.000 0.00 0.00 0.00 2.29
2076 2166 2.106074 CGGCGTGGTATGCACATGT 61.106 57.895 0.00 0.00 0.00 3.21
2077 2167 2.708865 CGGCGTGGTATGCACATG 59.291 61.111 0.00 0.00 0.00 3.21
2078 2168 3.202001 GCGGCGTGGTATGCACAT 61.202 61.111 9.37 0.00 0.00 3.21
2121 2211 2.341677 TTAGGAGGGAGGGGAGGGG 61.342 68.421 0.00 0.00 0.00 4.79
2122 2212 1.074395 GTTAGGAGGGAGGGGAGGG 60.074 68.421 0.00 0.00 0.00 4.30
2123 2213 1.074395 GGTTAGGAGGGAGGGGAGG 60.074 68.421 0.00 0.00 0.00 4.30
2124 2214 1.074395 GGGTTAGGAGGGAGGGGAG 60.074 68.421 0.00 0.00 0.00 4.30
2125 2215 2.654204 GGGGTTAGGAGGGAGGGGA 61.654 68.421 0.00 0.00 0.00 4.81
2126 2216 2.039724 GGGGTTAGGAGGGAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
2127 2217 2.446036 CGGGGTTAGGAGGGAGGG 60.446 72.222 0.00 0.00 0.00 4.30
2128 2218 1.457831 CTCGGGGTTAGGAGGGAGG 60.458 68.421 0.00 0.00 0.00 4.30
2129 2219 2.134933 GCTCGGGGTTAGGAGGGAG 61.135 68.421 0.00 0.00 0.00 4.30
2130 2220 2.042230 GCTCGGGGTTAGGAGGGA 60.042 66.667 0.00 0.00 0.00 4.20
2131 2221 3.162154 GGCTCGGGGTTAGGAGGG 61.162 72.222 0.00 0.00 0.00 4.30
2132 2222 3.537874 CGGCTCGGGGTTAGGAGG 61.538 72.222 0.00 0.00 0.00 4.30
2133 2223 4.222847 GCGGCTCGGGGTTAGGAG 62.223 72.222 0.00 0.00 0.00 3.69
2147 2237 4.208686 GTAGAGGGTGAGCGGCGG 62.209 72.222 9.78 0.00 0.00 6.13
2148 2238 4.208686 GGTAGAGGGTGAGCGGCG 62.209 72.222 0.51 0.51 0.00 6.46
2149 2239 3.851128 GGGTAGAGGGTGAGCGGC 61.851 72.222 0.00 0.00 0.00 6.53
2150 2240 2.363795 TGGGTAGAGGGTGAGCGG 60.364 66.667 0.00 0.00 0.00 5.52
2151 2241 1.949847 CTGTGGGTAGAGGGTGAGCG 61.950 65.000 0.00 0.00 0.00 5.03
2152 2242 1.901085 CTGTGGGTAGAGGGTGAGC 59.099 63.158 0.00 0.00 0.00 4.26
2153 2243 1.617947 GGCTGTGGGTAGAGGGTGAG 61.618 65.000 0.00 0.00 0.00 3.51
2154 2244 1.612442 GGCTGTGGGTAGAGGGTGA 60.612 63.158 0.00 0.00 0.00 4.02
2155 2245 2.990479 GGCTGTGGGTAGAGGGTG 59.010 66.667 0.00 0.00 0.00 4.61
2156 2246 2.683933 CGGCTGTGGGTAGAGGGT 60.684 66.667 0.00 0.00 0.00 4.34
2157 2247 4.162690 GCGGCTGTGGGTAGAGGG 62.163 72.222 0.00 0.00 0.00 4.30
2158 2248 4.162690 GGCGGCTGTGGGTAGAGG 62.163 72.222 0.00 0.00 0.00 3.69
2159 2249 4.514577 CGGCGGCTGTGGGTAGAG 62.515 72.222 7.61 0.00 0.00 2.43
2174 2264 1.564483 TTTAGGGTTAGGGTGGGCGG 61.564 60.000 0.00 0.00 0.00 6.13
2175 2265 0.393402 GTTTAGGGTTAGGGTGGGCG 60.393 60.000 0.00 0.00 0.00 6.13
2176 2266 3.583054 GTTTAGGGTTAGGGTGGGC 57.417 57.895 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.