>input_sequence_87133
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----------------------------------ATGTTCATATTGGAGCTGGGCATCTGGCTGTTGCCCTTCACGCTGC
TGCTGGCGCCGGCGCGGCGGCTGGTGCACCTCGTGCGCGAGCTGCAGCGGATCCTCCTCGTCGTCGCCTGCGGCCGCCGC
ACGCCGGCCGCCTTCGGCGAGGTCTGGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGCCTGA-----------
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>chr7D_1_TraesCS7D01G079900
CTCGTCCAGACGTTCACCAGCCGGCGTTGCCCGTGATACAGTAGACACGTGCAGTAGATTTTAGATATTTTTGACCGACG
CGAAAACGAAAAACCAAATATCGCCGTCGCCGGGGAATAATAACCGCGAATCTTTTTTAGCAATAACAGAGATAGAAAAA
AAACT--CGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTTACCACTATACTACAACGACT
TTGATGCAAAACGAGTTTGACAGCCCTTTTATATCCTAGTTCAAAAACAGGAGTACTATTGGTTAGCACGTCGTGCTACA
GATCTCTCTATCCTGTCAGCTCAGTTGAGTGGTCGGCAGCCAGTGGGTCACATCACATCCAAGCTAGGTGGCG-------
GGCGACCCAGCCGGGCCTCTGGGTCGATCCGGGTGGAGCCTACGGGACGACAGGAAACGCCGGCGAGACATAAATCGGAC
ACCCGATCGACCGATCCACAACATGTTGCATCATGGAGTATACCCT-GTACGACTGCAGCTACGTCCGGGCCACTCCGCT
TGCAATACGCCCACGCGAACCACGCTA----------------GGCCATGTGTAGCTGCCAGATTGATCGGTCGAGCGAG
CGATTAATTCCACCACGGTACCACG-----------TCGCGTCACAGCTGCTAGCCCGCCACCGGGGCGATGGACTGAGA
GCGGTGGTTGCATATACAAATCCGTTCAACGATGCGTGCTGCGTGGGACGTGGAGACCTGGCGTGTGGCCAACTAGCAGC
CATGGCCAGCAACATGCCAATCAGTCCATCGGCGCATTAGCCAGGCCACGGAGTTGGTTAACGCTACTAGTATCTATCTT
ATAAG---CTACCGCTCCGGCGCAACGAACCATCCATCA----------ATCGCGGCGAATCAAAGCGAATTATTGGCTG
TTGGTTGGGAACCACCGGAGGATTAGTTAGCAGCTAGCTGCTCCCGTTGATCGTGCCAAGGAGAAGCAGAGGAGG-----
-------------------AGGAGGAGACCGACGATGTTCATATTGGAGCTGGGCATCTGGCTGTTGCCCTTCACGCTGC
TGCTGGCGCCGGCGCGGCGGCTGGTGCACCTCGTGCGCGAGCTGCAGCGGATCCTCCTCGTCGTCGCCTGCGGCCGCCGC
ACGCCGGCCGCCTTCGGCGAGGTCTGGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGCCTGATCGGTCGGCCA
CACCCCGCCCACCATGCGTCGCTCTGGCTCGGCTCCATCCTGTAATTAACCTCCTGCTGTTCTTCCTCTTGTATATTCTG
CGCGTCCTAGTTTTATTTTTGGCGCGTCCTAGTTGTGCGTAACTGTTCTTCAAGAAAGGATCAAAGGACCGGTGCTACCT
CTGTTCTTTTGAGCTTTTGAGCGA----ACCCGCTCTCCGTTTTCCCTTTTGATTTTGAGTTCCTCTTTTG--CTTTCCT
CTGAGTATGCATCATGCATGCCTCTGCAATTGCGTTGAGGAGATGATCCATGAGCAGGGATCGCATCTGAGAGATGATCT
TGTTTTCAGATGTTTGTTTATAGAGAAAAGAAAAG----AAAGAAAGAAAATCCATTACTTTTCGGATTATTATGATGAG
TCATGCGAGATTCGGGGTCACGATTGTCGCGTGCATGATGACATGACGTGAATCGCTCTTGATGTGCTAGCCCGCCCGTT
TGCTGTCCTTGTCGTACACCCAATCAAAGCACGG--T---ACTAAATTTCTTATGCTATTCGCCGGATAGCTATGTATTA
CTTACCTCTTGTTTCATGATAAGATCAAACACGAACAAGAGCATGTACGGATAAAACCATAGAAAGTATAACTTATATAT
CATTCTAAAAAAGTACTACTATATAGTACTCCCTCTGTCCCAAAATACTTGTCGGAGGAATGGATGTATCTAAACGTATT
TTAGTTTTAGATACATTCGGTTTTATGCATTTCTCCGACAAATATTTTGGGACGGAGGGAGTACTCCCTCCTGTTGAGTA
TATGTATTTACCACGTGTATTCTTGTACTCCAAGTCTTCCTCCTTGTGTATAGTTGAGAATATAACTGCCCTATGTACTA
TATATACATGTGCATACCACGCCGCCGCCGCCGCCTCCCTGGCCGCCACGCCCCTCCCCTCCCTCCTAACCCCGAGCCGC
CGCTCACCCTCTACCCACAGCCGCCGCCCACCCTAACCCTAAAC
>chr7A_145
AACGAGA-------------------------------------------------------------------------
-------------------------------------------------------------------------AGAAAAA
AAAGGAGCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTTACCACTATACTACAACGACT
TGGGTGCAAAACATATCTAACTGTTCACTTATATCCATATTCATGCGAA-------------------------------
-----------CCTGTCAGTTTGGTTGAGTGGTCGGCAGCCAGTGGGTCAC-----ATCCAAGCTAGGTGGCA-------
GGCGACCCAGCCGGGCCTCTGGGTGGAGCCTACGT-----------ACGACAGGAAACGTCGGGGAGACATAAATCGGAC
ACCCGAT----CGACCCAGAACATGTTACATCATGGAGTATATCCCAGT---ACTGCAGCTACGTCCGGGCCATGT----
-------------------------------------------------------GTATCCTCCAGATTT-------GAG
AGATTAATTCCA---CGGTACCACGTCGCGCCATGCTCGCATCACAGCTGCTGGCCTGCCACCGGGCCGATCGACTGAGA
GCGGTGGTTGCATATACAAATCCGTTCAACGATGCGTGCTGCGTGGGACGTGGAGACCTGGCGTGTGGCCAACTAGC---
CACGGCCAGCGACATGCCAATCAATCTATCGGCGCATTAGCCAGGCTACGGAGTTGGTTAACACTGCTAG----TATCTT
ATAAG---CTACCGCTCCGGCGCAACGGGCCATCCATCA----------ATCGCGGCGAATCAAAGCGAATTATTGGCTG
TTGGTTGGGAACCACCGGAGGATTAGTTAGCCGC-AGCTGCTCCCGTTGATCGTGCCAAGGAGAAGCAGAGGAGGAGGCG
AAGGGGAAAGAGGAGGAGGAGGAGGAGATCGAAGATGTTCGTATTGGAGCTGGGCGTCTGGCTGCTGCCCTTCACGCTGC
TGCTGGCGCCGGCGCGGCGGCTCGTGCACCTCGTGCGGGAGCTGCAGCGGATCCTCCTCGTCGTCGCCTGCGGCCGCCGC
ACGCCCGCCGCCTTCGGGGAGGTCTGGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGCCTGATCGGTCCTCCA
CCGATCCT------TGCGTCGCTATGGCTCTGCTCCACCGTGTAATTAACCTCCTGCGTTTCTTCCTCTTGTAAATTCCG
CGCGTCCTAGTTTTTTTTCTGGCGCGTCCTAGTTGTGCGTAGCTGTTCTTCAAGAAAGGAT--------CGATGCTACCT
CTTTTCTTTTGATTGAGCTTTTGAACAGACCAGCTCTCTGTTTTCCTTTTTGATTTTGACTTCCTCTTCTGTCTTTTCCT
CTGAATATGCATCAGACATGCCATTGTAATTGCGTTGAGGAGATGATCGATGAACAGGGGTCTCATCTGAGCGATGATCT
TGTTTTAAGATGTTTATATACAGAGAAAAAAAACAGAAAAAACAAAGAAAATCCATTACTTTTCGGATTATTATGATGAA
TCGTGCGAGATTCGGGGTCACGATTGTCGCGTGCATGATGACATGACGTGAATCGCTCTTGATGTGCTAGCCCGCCCGTT
TCCTGTCGTTGTCCTACACTCAATCAAGCACGCCACT---ACTAAATTTCTTCTCCTATTCACCGGATAGCTAAGTATTA
CTTACCTCTTGTTTCATGATAAGATCGAACACGAAC--------------------------------------------
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>chr4A_156
AAAAAATAG-----------------------------------------------------------------------
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----T--CGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTTACCACTATACTACAACGACT
TTGATGCAAAATTGTTTTGACAGGCTATCCATATCCTTGTTCATGCGAA-------------------------------
-----------CCTGTCAGTTCAGTTGAGTGGTCGGCAGCCAATGGGTCAC-----ATCCAAGCTAGGTGGCGGGCGAGG
GGCGACCCAACCGGGCCTCCGGGTCGACCCGGGTGGAGCCTACGGGACCACAGGAAACGTCGGCGGGACATAAATCGGA-
------------GACCCAGAACATGTTACATCATGAAGTATATCCT-GT---ACTGCAGCTACGTCCGGGCCACTCCGCT
CG---TACGCCCACGCGAACCACGCCACGCTTCCAGGTCGGTCGGCCATGTGTACGTACCCTCCAGATTT-------GAG
AGATTAATTCCA---CGGTACCACG-----------TCGCATCACAGCTGCTGGCCTGCTACCGGGCCGATCGACGGAGA
GCGGTGGTTGCATATACAAATCCGTTCAACGATGCGTGCTGCGTGGGACGTGGAGACCTGCCGTGTGGCCAACTAGCAGC
CATGGCCAGCAGCATGCCAATCAGTCCATCGGCGCATTAGCCAGGCTACGGAGTTGGTTAACACTACTAGTAG-TATCTT
ATAAGCTACTACCGCTCCGGCGCGACGAGCCATCAACCATCCGTCCATCATCGCGGCGAATCAAAGCGAATTATTGGCTG
TTAGTTGGGAACCACCGGAGGATTAGTTAGCAGCTAGCTGCTCCCGTTGATCGTGCCAAGAAGAAGCAGAGGAGAAGTG-
--------------GGAGGAGGAGGAGATCGACGATGTTCATATTGGAGCTGGGCATCTGGCTGCTGCCCTTCACGCTGC
TGCTGGCGCCGGCGCGGCGGCTCGTGCACCTCCTCCGGGAGCTGCAGCGGATCCTCCTCGTCGTCGCCTGCGGCCGCCGC
ACGCCCGCGGCCTTCGGGGAGGTCTGGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGCCTGATCGGTCCACCA
CAGCCCGTCCACCATGCGTCGCTCTGGCTCGGCTCCATCCTGTAATTAACCTCCTGCTGTTCTTCCTCTTGTATACTCAG
CGCCTCCTAGTTTTTTTTCTGGCGCGTCCTAGTTGTGTGTAGCTGTTCCTCAAGAAAGGATCAAAGGACCGGCGCTACCT
CTTTTCTTTTGAGCTTTTGAGCGA----ACCCGCTCTCTGTTCCCCCTTTTGATTTTGACCTCATCTTCTG--TTTTCCT
CTGAGTATGCATCATGCATGCCTCTGTAATTGCGTTGAGGAGATGATCGATGAACAGGGATCTCATCTGAGCGATGATCC
TGTTTTCATATGTTTATAGAGAAAGAA---AAAAG----AAAGAAAGAAAATCCATTAATTTTCAGAGTATTATGATGAA
TCATGCGAGATTCGGGGTCACGATTGTCGAGTGCATGATGACATGACGTGAATCGCTCTTGATGTGCTAGCCCGCCGGTT
TCCTGTCGTTGTCGTACACTCAATCAAGCACGCCACTACTACTAAATTTCTTCTGCTATTCACCGGATAGCTAAGTATTA
CTTACCTCTTGTTTCATGATAAGATCAAACACAAAC--------------------------------------------
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>SNPs
SS--SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
---S----------------------------------------------------------------------------
------------SSS--------S--S----------S-----SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS--------S-------------------------------SSSSS------------------------
---------------------------S-------------------------------S--------------------
-------SSSS---S---S--------S--------------S------SSS----------------------------
S-SSS--------------------S----------------------------SS-S--SSSSS---SSSSSSSSS---
S-----------SSS-------------------------S-----------S---S---------S----S--------
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----------------------------------------------S---------------S---------SS------
----------------------------S---------------------------------------------------
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----------------------------S-----------------------------------S---------------
----------------------S--------------S------------------------------------------
-----S-----------S---------------------------------------------------------SS---
--S----S----------------------------------------------------------------------S-
--------------S---S----------------------S--------------------------------------
--S-----------------------------------S--------------------S--------S----S------
--------------------------S---------------------S----S--------S--------S--------
---------------S-S--S--------S-------------------------------------------------S
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-S-----S-----------S-------SSSSSSS------------------S--------S-----------S------
------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_126
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--------------------------TCGCCGGGGAATAATAACCG----------------------------------
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>reverse_1569
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------------------------------------------------CATGAGCAGGGATCGCATCT------------
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