Multiple sequence alignment - TraesCS7D01G072200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G072200 chr7D 100.000 3044 0 0 1 3044 42544851 42547894 0.000000e+00 5622
1 TraesCS7D01G072200 chr4A 94.027 2662 98 34 430 3044 649427535 649430182 0.000000e+00 3978
2 TraesCS7D01G072200 chr7A 95.478 2123 51 24 936 3044 41873113 41875204 0.000000e+00 3347
3 TraesCS7D01G072200 chr7A 90.708 452 33 7 434 877 41872350 41872800 7.270000e-166 593
4 TraesCS7D01G072200 chr7A 75.000 476 91 15 1363 1812 195217981 195217508 8.610000e-46 195
5 TraesCS7D01G072200 chr6D 78.747 447 85 7 1379 1817 26351136 26351580 1.070000e-74 291
6 TraesCS7D01G072200 chr6D 76.854 445 84 13 1379 1806 364227249 364227691 1.820000e-57 233
7 TraesCS7D01G072200 chr6B 77.874 461 88 13 1367 1817 48552037 48552493 1.080000e-69 274
8 TraesCS7D01G072200 chr6B 76.577 444 87 11 1379 1806 549193622 549194064 8.490000e-56 228
9 TraesCS7D01G072200 chr6A 77.657 461 89 11 1367 1817 27772868 27773324 5.000000e-68 268
10 TraesCS7D01G072200 chr6A 76.549 452 85 13 1379 1812 505247430 505246982 8.490000e-56 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G072200 chr7D 42544851 42547894 3043 False 5622 5622 100.000 1 3044 1 chr7D.!!$F1 3043
1 TraesCS7D01G072200 chr4A 649427535 649430182 2647 False 3978 3978 94.027 430 3044 1 chr4A.!!$F1 2614
2 TraesCS7D01G072200 chr7A 41872350 41875204 2854 False 1970 3347 93.093 434 3044 2 chr7A.!!$F1 2610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.828022 TGTCCAAGACCACGTCAACT 59.172 50.0 0.0 0.0 34.6 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 2347 2.106683 CGTTTCCGTCCCTCCATGC 61.107 63.158 0.0 0.0 0.0 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.562953 AACCAGTGTTCCATCCCCA 58.437 52.632 0.00 0.00 0.00 4.96
19 20 1.084018 AACCAGTGTTCCATCCCCAT 58.916 50.000 0.00 0.00 0.00 4.00
20 21 1.979809 ACCAGTGTTCCATCCCCATA 58.020 50.000 0.00 0.00 0.00 2.74
21 22 1.846439 ACCAGTGTTCCATCCCCATAG 59.154 52.381 0.00 0.00 0.00 2.23
22 23 2.126882 CCAGTGTTCCATCCCCATAGA 58.873 52.381 0.00 0.00 0.00 1.98
23 24 2.509548 CCAGTGTTCCATCCCCATAGAA 59.490 50.000 0.00 0.00 0.00 2.10
24 25 3.053693 CCAGTGTTCCATCCCCATAGAAA 60.054 47.826 0.00 0.00 0.00 2.52
25 26 4.386761 CCAGTGTTCCATCCCCATAGAAAT 60.387 45.833 0.00 0.00 0.00 2.17
26 27 5.163099 CCAGTGTTCCATCCCCATAGAAATA 60.163 44.000 0.00 0.00 0.00 1.40
27 28 6.364701 CAGTGTTCCATCCCCATAGAAATAA 58.635 40.000 0.00 0.00 0.00 1.40
28 29 6.263168 CAGTGTTCCATCCCCATAGAAATAAC 59.737 42.308 0.00 0.00 0.00 1.89
29 30 5.238650 GTGTTCCATCCCCATAGAAATAACG 59.761 44.000 0.00 0.00 0.00 3.18
30 31 5.131308 TGTTCCATCCCCATAGAAATAACGA 59.869 40.000 0.00 0.00 0.00 3.85
31 32 5.897851 TCCATCCCCATAGAAATAACGAA 57.102 39.130 0.00 0.00 0.00 3.85
32 33 6.255294 TCCATCCCCATAGAAATAACGAAA 57.745 37.500 0.00 0.00 0.00 3.46
33 34 6.848069 TCCATCCCCATAGAAATAACGAAAT 58.152 36.000 0.00 0.00 0.00 2.17
34 35 6.714810 TCCATCCCCATAGAAATAACGAAATG 59.285 38.462 0.00 0.00 0.00 2.32
35 36 6.071952 CCATCCCCATAGAAATAACGAAATGG 60.072 42.308 0.00 0.00 34.85 3.16
36 37 6.255294 TCCCCATAGAAATAACGAAATGGA 57.745 37.500 0.00 0.00 36.76 3.41
37 38 6.664714 TCCCCATAGAAATAACGAAATGGAA 58.335 36.000 0.00 0.00 36.76 3.53
38 39 6.544564 TCCCCATAGAAATAACGAAATGGAAC 59.455 38.462 0.00 0.00 36.76 3.62
39 40 6.546034 CCCCATAGAAATAACGAAATGGAACT 59.454 38.462 0.00 0.00 36.76 3.01
40 41 7.717875 CCCCATAGAAATAACGAAATGGAACTA 59.282 37.037 0.00 0.00 36.76 2.24
41 42 8.557029 CCCATAGAAATAACGAAATGGAACTAC 58.443 37.037 0.00 0.00 36.76 2.73
42 43 9.326413 CCATAGAAATAACGAAATGGAACTACT 57.674 33.333 0.00 0.00 36.76 2.57
46 47 9.893305 AGAAATAACGAAATGGAACTACTTTTG 57.107 29.630 0.00 0.00 0.00 2.44
47 48 9.124807 GAAATAACGAAATGGAACTACTTTTGG 57.875 33.333 0.00 0.00 0.00 3.28
48 49 7.989416 ATAACGAAATGGAACTACTTTTGGA 57.011 32.000 0.00 0.00 0.00 3.53
49 50 6.702716 AACGAAATGGAACTACTTTTGGAA 57.297 33.333 0.00 0.00 0.00 3.53
50 51 6.894339 ACGAAATGGAACTACTTTTGGAAT 57.106 33.333 0.00 0.00 0.00 3.01
51 52 7.284919 ACGAAATGGAACTACTTTTGGAATT 57.715 32.000 0.00 0.00 0.00 2.17
52 53 8.398878 ACGAAATGGAACTACTTTTGGAATTA 57.601 30.769 0.00 0.00 0.00 1.40
53 54 9.020731 ACGAAATGGAACTACTTTTGGAATTAT 57.979 29.630 0.00 0.00 0.00 1.28
54 55 9.503427 CGAAATGGAACTACTTTTGGAATTATC 57.497 33.333 0.00 0.00 0.00 1.75
55 56 9.503427 GAAATGGAACTACTTTTGGAATTATCG 57.497 33.333 0.00 0.00 0.00 2.92
56 57 6.995511 TGGAACTACTTTTGGAATTATCGG 57.004 37.500 0.00 0.00 0.00 4.18
57 58 5.355910 TGGAACTACTTTTGGAATTATCGGC 59.644 40.000 0.00 0.00 0.00 5.54
58 59 5.220989 GGAACTACTTTTGGAATTATCGGCC 60.221 44.000 0.00 0.00 0.00 6.13
59 60 5.112129 ACTACTTTTGGAATTATCGGCCT 57.888 39.130 0.00 0.00 0.00 5.19
60 61 5.123936 ACTACTTTTGGAATTATCGGCCTC 58.876 41.667 0.00 0.00 0.00 4.70
61 62 3.288092 ACTTTTGGAATTATCGGCCTCC 58.712 45.455 0.00 0.00 0.00 4.30
62 63 3.053619 ACTTTTGGAATTATCGGCCTCCT 60.054 43.478 0.00 0.00 0.00 3.69
63 64 4.165372 ACTTTTGGAATTATCGGCCTCCTA 59.835 41.667 0.00 0.00 0.00 2.94
64 65 4.993705 TTTGGAATTATCGGCCTCCTAT 57.006 40.909 0.00 0.00 0.00 2.57
65 66 6.043938 ACTTTTGGAATTATCGGCCTCCTATA 59.956 38.462 0.00 0.00 0.00 1.31
66 67 6.636454 TTTGGAATTATCGGCCTCCTATAT 57.364 37.500 0.00 0.00 0.00 0.86
67 68 7.743116 TTTGGAATTATCGGCCTCCTATATA 57.257 36.000 0.00 0.00 0.00 0.86
68 69 6.726490 TGGAATTATCGGCCTCCTATATAC 57.274 41.667 0.00 0.00 0.00 1.47
69 70 6.441222 TGGAATTATCGGCCTCCTATATACT 58.559 40.000 0.00 0.00 0.00 2.12
70 71 6.323996 TGGAATTATCGGCCTCCTATATACTG 59.676 42.308 0.00 0.00 0.00 2.74
71 72 5.793030 ATTATCGGCCTCCTATATACTGC 57.207 43.478 0.00 0.00 0.00 4.40
72 73 2.597578 TCGGCCTCCTATATACTGCA 57.402 50.000 0.00 0.00 0.00 4.41
73 74 3.101643 TCGGCCTCCTATATACTGCAT 57.898 47.619 0.00 0.00 0.00 3.96
74 75 3.441101 TCGGCCTCCTATATACTGCATT 58.559 45.455 0.00 0.00 0.00 3.56
75 76 3.838317 TCGGCCTCCTATATACTGCATTT 59.162 43.478 0.00 0.00 0.00 2.32
76 77 5.020795 TCGGCCTCCTATATACTGCATTTA 58.979 41.667 0.00 0.00 0.00 1.40
77 78 5.482526 TCGGCCTCCTATATACTGCATTTAA 59.517 40.000 0.00 0.00 0.00 1.52
78 79 6.014070 TCGGCCTCCTATATACTGCATTTAAA 60.014 38.462 0.00 0.00 0.00 1.52
79 80 6.823689 CGGCCTCCTATATACTGCATTTAAAT 59.176 38.462 0.00 0.00 0.00 1.40
80 81 7.201644 CGGCCTCCTATATACTGCATTTAAATG 60.202 40.741 21.54 21.54 39.40 2.32
81 82 7.829211 GGCCTCCTATATACTGCATTTAAATGA 59.171 37.037 28.33 14.11 38.70 2.57
82 83 9.401058 GCCTCCTATATACTGCATTTAAATGAT 57.599 33.333 28.33 16.23 38.70 2.45
90 91 6.778834 ACTGCATTTAAATGATGATGTCCA 57.221 33.333 28.33 14.29 38.70 4.02
91 92 7.172868 ACTGCATTTAAATGATGATGTCCAA 57.827 32.000 28.33 3.01 38.70 3.53
92 93 7.262772 ACTGCATTTAAATGATGATGTCCAAG 58.737 34.615 28.33 12.27 38.70 3.61
93 94 7.123098 ACTGCATTTAAATGATGATGTCCAAGA 59.877 33.333 28.33 0.00 38.70 3.02
94 95 7.259882 TGCATTTAAATGATGATGTCCAAGAC 58.740 34.615 28.33 8.58 38.70 3.01
95 96 6.698766 GCATTTAAATGATGATGTCCAAGACC 59.301 38.462 28.33 4.36 38.70 3.85
96 97 7.631161 GCATTTAAATGATGATGTCCAAGACCA 60.631 37.037 28.33 0.00 38.70 4.02
97 98 6.757897 TTAAATGATGATGTCCAAGACCAC 57.242 37.500 0.00 0.00 0.00 4.16
98 99 2.385013 TGATGATGTCCAAGACCACG 57.615 50.000 0.00 0.00 0.00 4.94
99 100 1.623311 TGATGATGTCCAAGACCACGT 59.377 47.619 0.00 0.00 0.00 4.49
100 101 2.271800 GATGATGTCCAAGACCACGTC 58.728 52.381 0.00 0.00 0.00 4.34
101 102 1.044611 TGATGTCCAAGACCACGTCA 58.955 50.000 0.00 0.00 36.41 4.35
102 103 1.414550 TGATGTCCAAGACCACGTCAA 59.585 47.619 0.00 0.00 35.94 3.18
103 104 1.798813 GATGTCCAAGACCACGTCAAC 59.201 52.381 0.00 0.00 34.60 3.18
104 105 0.828022 TGTCCAAGACCACGTCAACT 59.172 50.000 0.00 0.00 34.60 3.16
105 106 1.208535 TGTCCAAGACCACGTCAACTT 59.791 47.619 0.00 0.00 34.60 2.66
106 107 2.431419 TGTCCAAGACCACGTCAACTTA 59.569 45.455 0.00 0.00 34.60 2.24
107 108 3.070446 TGTCCAAGACCACGTCAACTTAT 59.930 43.478 0.00 0.00 34.60 1.73
108 109 4.281435 TGTCCAAGACCACGTCAACTTATA 59.719 41.667 0.00 0.00 34.60 0.98
109 110 5.046878 TGTCCAAGACCACGTCAACTTATAT 60.047 40.000 0.00 0.00 34.60 0.86
110 111 5.873164 GTCCAAGACCACGTCAACTTATATT 59.127 40.000 0.00 0.00 34.60 1.28
111 112 6.370718 GTCCAAGACCACGTCAACTTATATTT 59.629 38.462 0.00 0.00 34.60 1.40
112 113 6.592607 TCCAAGACCACGTCAACTTATATTTC 59.407 38.462 0.00 0.00 34.60 2.17
113 114 6.594159 CCAAGACCACGTCAACTTATATTTCT 59.406 38.462 0.00 0.00 34.60 2.52
114 115 7.119262 CCAAGACCACGTCAACTTATATTTCTT 59.881 37.037 0.00 0.00 34.60 2.52
115 116 9.146984 CAAGACCACGTCAACTTATATTTCTTA 57.853 33.333 0.00 0.00 34.60 2.10
116 117 9.715121 AAGACCACGTCAACTTATATTTCTTAA 57.285 29.630 0.00 0.00 34.60 1.85
117 118 9.715121 AGACCACGTCAACTTATATTTCTTAAA 57.285 29.630 0.00 0.00 34.60 1.52
148 149 4.939052 AGTACTTCACTAGTGTGCACTT 57.061 40.909 21.99 9.00 43.49 3.16
150 151 6.591750 AGTACTTCACTAGTGTGCACTTAT 57.408 37.500 21.99 6.33 43.49 1.73
151 152 6.994221 AGTACTTCACTAGTGTGCACTTATT 58.006 36.000 21.99 2.40 43.49 1.40
152 153 7.442656 AGTACTTCACTAGTGTGCACTTATTT 58.557 34.615 21.99 1.59 43.49 1.40
153 154 6.787085 ACTTCACTAGTGTGCACTTATTTC 57.213 37.500 21.99 1.92 43.49 2.17
154 155 6.525629 ACTTCACTAGTGTGCACTTATTTCT 58.474 36.000 21.99 8.98 43.49 2.52
155 156 6.647067 ACTTCACTAGTGTGCACTTATTTCTC 59.353 38.462 21.99 0.00 43.49 2.87
156 157 6.346477 TCACTAGTGTGCACTTATTTCTCT 57.654 37.500 21.99 6.11 43.49 3.10
157 158 6.159293 TCACTAGTGTGCACTTATTTCTCTG 58.841 40.000 21.99 2.21 43.49 3.35
158 159 4.932200 ACTAGTGTGCACTTATTTCTCTGC 59.068 41.667 19.41 0.00 42.54 4.26
159 160 4.013267 AGTGTGCACTTATTTCTCTGCT 57.987 40.909 19.41 0.00 38.83 4.24
160 161 3.999663 AGTGTGCACTTATTTCTCTGCTC 59.000 43.478 19.41 0.00 38.83 4.26
161 162 3.748048 GTGTGCACTTATTTCTCTGCTCA 59.252 43.478 19.41 0.00 32.33 4.26
162 163 4.394300 GTGTGCACTTATTTCTCTGCTCAT 59.606 41.667 19.41 0.00 36.04 2.90
163 164 4.633126 TGTGCACTTATTTCTCTGCTCATC 59.367 41.667 19.41 0.00 30.39 2.92
164 165 4.633126 GTGCACTTATTTCTCTGCTCATCA 59.367 41.667 10.32 0.00 0.00 3.07
165 166 5.296283 GTGCACTTATTTCTCTGCTCATCAT 59.704 40.000 10.32 0.00 0.00 2.45
166 167 5.526479 TGCACTTATTTCTCTGCTCATCATC 59.474 40.000 0.00 0.00 0.00 2.92
167 168 5.333187 GCACTTATTTCTCTGCTCATCATCG 60.333 44.000 0.00 0.00 0.00 3.84
168 169 5.752472 CACTTATTTCTCTGCTCATCATCGT 59.248 40.000 0.00 0.00 0.00 3.73
169 170 5.752472 ACTTATTTCTCTGCTCATCATCGTG 59.248 40.000 0.00 0.00 0.00 4.35
170 171 3.874392 TTTCTCTGCTCATCATCGTGA 57.126 42.857 0.00 0.00 0.00 4.35
171 172 2.859526 TCTCTGCTCATCATCGTGAC 57.140 50.000 0.00 0.00 0.00 3.67
172 173 2.094675 TCTCTGCTCATCATCGTGACA 58.905 47.619 0.00 0.00 0.00 3.58
173 174 2.159324 TCTCTGCTCATCATCGTGACAC 60.159 50.000 0.00 0.00 0.00 3.67
174 175 1.545582 TCTGCTCATCATCGTGACACA 59.454 47.619 6.37 0.00 0.00 3.72
175 176 2.167075 TCTGCTCATCATCGTGACACAT 59.833 45.455 6.37 0.00 0.00 3.21
176 177 3.381272 TCTGCTCATCATCGTGACACATA 59.619 43.478 6.37 0.00 0.00 2.29
177 178 4.038402 TCTGCTCATCATCGTGACACATAT 59.962 41.667 6.37 0.00 0.00 1.78
178 179 5.241506 TCTGCTCATCATCGTGACACATATA 59.758 40.000 6.37 0.00 0.00 0.86
179 180 6.029346 TGCTCATCATCGTGACACATATAT 57.971 37.500 6.37 0.00 0.00 0.86
180 181 7.121168 TCTGCTCATCATCGTGACACATATATA 59.879 37.037 6.37 0.00 0.00 0.86
181 182 7.253422 TGCTCATCATCGTGACACATATATAG 58.747 38.462 6.37 0.00 0.00 1.31
182 183 6.694844 GCTCATCATCGTGACACATATATAGG 59.305 42.308 6.37 0.00 0.00 2.57
183 184 7.100458 TCATCATCGTGACACATATATAGGG 57.900 40.000 6.37 0.00 0.00 3.53
184 185 6.663523 TCATCATCGTGACACATATATAGGGT 59.336 38.462 6.37 0.00 0.00 4.34
185 186 6.911250 TCATCGTGACACATATATAGGGTT 57.089 37.500 6.37 0.00 0.00 4.11
186 187 7.297936 TCATCGTGACACATATATAGGGTTT 57.702 36.000 6.37 0.00 0.00 3.27
187 188 7.375834 TCATCGTGACACATATATAGGGTTTC 58.624 38.462 6.37 0.00 0.00 2.78
188 189 6.718522 TCGTGACACATATATAGGGTTTCA 57.281 37.500 6.37 1.51 0.00 2.69
189 190 6.745116 TCGTGACACATATATAGGGTTTCAG 58.255 40.000 6.37 0.34 0.00 3.02
190 191 6.322969 TCGTGACACATATATAGGGTTTCAGT 59.677 38.462 6.37 0.00 0.00 3.41
191 192 6.984474 CGTGACACATATATAGGGTTTCAGTT 59.016 38.462 6.37 0.00 0.00 3.16
192 193 8.139350 CGTGACACATATATAGGGTTTCAGTTA 58.861 37.037 6.37 0.00 0.00 2.24
193 194 9.998106 GTGACACATATATAGGGTTTCAGTTAT 57.002 33.333 0.00 0.00 0.00 1.89
196 197 9.706691 ACACATATATAGGGTTTCAGTTATTCG 57.293 33.333 0.00 0.00 0.00 3.34
197 198 9.923143 CACATATATAGGGTTTCAGTTATTCGA 57.077 33.333 0.00 0.00 0.00 3.71
204 205 7.989416 AGGGTTTCAGTTATTCGATAACAAA 57.011 32.000 15.43 8.58 45.80 2.83
205 206 8.040716 AGGGTTTCAGTTATTCGATAACAAAG 57.959 34.615 15.43 8.36 45.80 2.77
206 207 7.881232 AGGGTTTCAGTTATTCGATAACAAAGA 59.119 33.333 15.43 9.81 45.80 2.52
207 208 8.674607 GGGTTTCAGTTATTCGATAACAAAGAT 58.325 33.333 15.43 0.00 45.80 2.40
219 220 7.402811 CGATAACAAAGATATCGTTAGCCAA 57.597 36.000 3.47 0.00 44.32 4.52
220 221 7.847487 CGATAACAAAGATATCGTTAGCCAAA 58.153 34.615 3.47 0.00 44.32 3.28
221 222 7.792508 CGATAACAAAGATATCGTTAGCCAAAC 59.207 37.037 3.47 0.00 44.32 2.93
222 223 5.813080 ACAAAGATATCGTTAGCCAAACC 57.187 39.130 3.47 0.00 34.33 3.27
223 224 4.331717 ACAAAGATATCGTTAGCCAAACCG 59.668 41.667 3.47 0.00 34.33 4.44
224 225 3.107642 AGATATCGTTAGCCAAACCGG 57.892 47.619 0.00 0.00 34.33 5.28
225 226 2.696707 AGATATCGTTAGCCAAACCGGA 59.303 45.455 9.46 0.00 36.56 5.14
226 227 3.133362 AGATATCGTTAGCCAAACCGGAA 59.867 43.478 9.46 0.00 36.56 4.30
227 228 2.413310 ATCGTTAGCCAAACCGGAAT 57.587 45.000 9.46 0.00 36.56 3.01
228 229 3.547054 ATCGTTAGCCAAACCGGAATA 57.453 42.857 9.46 0.00 36.56 1.75
229 230 3.331478 TCGTTAGCCAAACCGGAATAA 57.669 42.857 9.46 0.00 36.56 1.40
230 231 3.002102 TCGTTAGCCAAACCGGAATAAC 58.998 45.455 9.46 6.78 36.12 1.89
231 232 2.096335 CGTTAGCCAAACCGGAATAACC 59.904 50.000 9.46 0.00 36.10 2.85
232 233 3.083293 GTTAGCCAAACCGGAATAACCA 58.917 45.455 9.46 0.00 38.90 3.67
233 234 2.296073 AGCCAAACCGGAATAACCAA 57.704 45.000 9.46 0.00 38.90 3.67
234 235 2.599677 AGCCAAACCGGAATAACCAAA 58.400 42.857 9.46 0.00 38.90 3.28
235 236 2.560981 AGCCAAACCGGAATAACCAAAG 59.439 45.455 9.46 0.00 38.90 2.77
236 237 2.297880 GCCAAACCGGAATAACCAAAGT 59.702 45.455 9.46 0.00 38.90 2.66
237 238 3.859252 GCCAAACCGGAATAACCAAAGTG 60.859 47.826 9.46 0.00 38.90 3.16
238 239 3.319689 CCAAACCGGAATAACCAAAGTGT 59.680 43.478 9.46 0.00 38.90 3.55
239 240 4.202172 CCAAACCGGAATAACCAAAGTGTT 60.202 41.667 9.46 0.00 38.90 3.32
240 241 5.353111 CAAACCGGAATAACCAAAGTGTTT 58.647 37.500 9.46 0.00 38.90 2.83
241 242 5.601583 AACCGGAATAACCAAAGTGTTTT 57.398 34.783 9.46 0.00 38.90 2.43
242 243 6.712179 AACCGGAATAACCAAAGTGTTTTA 57.288 33.333 9.46 0.00 38.90 1.52
243 244 6.904463 ACCGGAATAACCAAAGTGTTTTAT 57.096 33.333 9.46 0.00 38.90 1.40
244 245 6.683715 ACCGGAATAACCAAAGTGTTTTATG 58.316 36.000 9.46 0.00 38.90 1.90
245 246 6.265876 ACCGGAATAACCAAAGTGTTTTATGT 59.734 34.615 9.46 0.00 38.90 2.29
246 247 7.447853 ACCGGAATAACCAAAGTGTTTTATGTA 59.552 33.333 9.46 0.00 38.90 2.29
247 248 8.298140 CCGGAATAACCAAAGTGTTTTATGTAA 58.702 33.333 0.00 0.00 38.90 2.41
248 249 9.849166 CGGAATAACCAAAGTGTTTTATGTAAT 57.151 29.630 0.00 0.00 38.90 1.89
279 280 9.472361 AAATTGTTTCATGAGACTTCTTCATTG 57.528 29.630 16.54 0.00 0.00 2.82
280 281 7.806409 TTGTTTCATGAGACTTCTTCATTGA 57.194 32.000 16.54 0.00 0.00 2.57
281 282 7.430992 TGTTTCATGAGACTTCTTCATTGAG 57.569 36.000 16.54 0.00 0.00 3.02
282 283 6.429078 TGTTTCATGAGACTTCTTCATTGAGG 59.571 38.462 16.54 0.00 0.00 3.86
283 284 6.364568 TTCATGAGACTTCTTCATTGAGGA 57.635 37.500 0.00 0.00 0.00 3.71
284 285 6.556974 TCATGAGACTTCTTCATTGAGGAT 57.443 37.500 0.00 0.00 0.00 3.24
285 286 6.346896 TCATGAGACTTCTTCATTGAGGATG 58.653 40.000 9.32 9.32 37.08 3.51
286 287 6.155737 TCATGAGACTTCTTCATTGAGGATGA 59.844 38.462 15.67 5.58 42.95 2.92
287 288 5.728471 TGAGACTTCTTCATTGAGGATGAC 58.272 41.667 15.67 10.80 44.28 3.06
288 289 5.483231 TGAGACTTCTTCATTGAGGATGACT 59.517 40.000 15.67 14.41 44.28 3.41
289 290 6.013898 TGAGACTTCTTCATTGAGGATGACTT 60.014 38.462 15.67 3.96 44.28 3.01
290 291 6.777782 AGACTTCTTCATTGAGGATGACTTT 58.222 36.000 15.67 0.00 44.28 2.66
291 292 7.230027 AGACTTCTTCATTGAGGATGACTTTT 58.770 34.615 15.67 0.00 44.28 2.27
292 293 7.390162 AGACTTCTTCATTGAGGATGACTTTTC 59.610 37.037 15.67 5.39 44.28 2.29
293 294 7.000472 ACTTCTTCATTGAGGATGACTTTTCA 59.000 34.615 15.67 0.00 44.28 2.69
294 295 7.174599 ACTTCTTCATTGAGGATGACTTTTCAG 59.825 37.037 15.67 3.61 44.28 3.02
295 296 5.413833 TCTTCATTGAGGATGACTTTTCAGC 59.586 40.000 0.00 0.00 44.28 4.26
305 306 6.866010 GATGACTTTTCAGCCCAAATTTTT 57.134 33.333 0.00 0.00 34.35 1.94
336 337 8.831715 AATGTTGTGGAATTTGAAATAACCTC 57.168 30.769 12.70 10.41 0.00 3.85
337 338 7.353414 TGTTGTGGAATTTGAAATAACCTCA 57.647 32.000 12.70 12.19 0.00 3.86
338 339 7.961351 TGTTGTGGAATTTGAAATAACCTCAT 58.039 30.769 14.56 0.00 0.00 2.90
339 340 7.871973 TGTTGTGGAATTTGAAATAACCTCATG 59.128 33.333 14.56 0.00 0.00 3.07
340 341 7.773489 TGTGGAATTTGAAATAACCTCATGA 57.227 32.000 12.70 0.00 0.00 3.07
341 342 7.829725 TGTGGAATTTGAAATAACCTCATGAG 58.170 34.615 16.24 16.24 0.00 2.90
342 343 7.669304 TGTGGAATTTGAAATAACCTCATGAGA 59.331 33.333 24.62 4.53 0.00 3.27
343 344 7.970614 GTGGAATTTGAAATAACCTCATGAGAC 59.029 37.037 24.62 4.02 0.00 3.36
344 345 7.890127 TGGAATTTGAAATAACCTCATGAGACT 59.110 33.333 24.62 12.47 0.00 3.24
345 346 8.743714 GGAATTTGAAATAACCTCATGAGACTT 58.256 33.333 24.62 15.93 0.00 3.01
346 347 9.780413 GAATTTGAAATAACCTCATGAGACTTC 57.220 33.333 24.62 16.61 0.00 3.01
347 348 7.687941 TTTGAAATAACCTCATGAGACTTCC 57.312 36.000 24.62 7.30 0.00 3.46
348 349 6.373005 TGAAATAACCTCATGAGACTTCCA 57.627 37.500 24.62 9.64 0.00 3.53
349 350 6.778821 TGAAATAACCTCATGAGACTTCCAA 58.221 36.000 24.62 2.65 0.00 3.53
350 351 6.655003 TGAAATAACCTCATGAGACTTCCAAC 59.345 38.462 24.62 9.26 0.00 3.77
351 352 6.380079 AATAACCTCATGAGACTTCCAACT 57.620 37.500 24.62 0.37 0.00 3.16
352 353 3.971245 ACCTCATGAGACTTCCAACTC 57.029 47.619 24.62 0.00 0.00 3.01
353 354 3.242867 ACCTCATGAGACTTCCAACTCA 58.757 45.455 24.62 0.00 45.19 3.41
354 355 3.260380 ACCTCATGAGACTTCCAACTCAG 59.740 47.826 24.62 4.84 44.50 3.35
355 356 3.260380 CCTCATGAGACTTCCAACTCAGT 59.740 47.826 24.62 0.00 44.50 3.41
356 357 4.464244 CCTCATGAGACTTCCAACTCAGTA 59.536 45.833 24.62 0.00 44.50 2.74
357 358 5.128499 CCTCATGAGACTTCCAACTCAGTAT 59.872 44.000 24.62 0.00 44.50 2.12
358 359 6.214191 TCATGAGACTTCCAACTCAGTATC 57.786 41.667 0.00 0.00 44.50 2.24
359 360 5.954752 TCATGAGACTTCCAACTCAGTATCT 59.045 40.000 0.00 0.00 44.50 1.98
360 361 6.438741 TCATGAGACTTCCAACTCAGTATCTT 59.561 38.462 0.00 0.00 44.50 2.40
361 362 6.672266 TGAGACTTCCAACTCAGTATCTTT 57.328 37.500 0.00 0.00 38.08 2.52
362 363 6.692486 TGAGACTTCCAACTCAGTATCTTTC 58.308 40.000 0.00 0.00 38.08 2.62
363 364 6.043854 AGACTTCCAACTCAGTATCTTTCC 57.956 41.667 0.00 0.00 0.00 3.13
364 365 5.782845 AGACTTCCAACTCAGTATCTTTCCT 59.217 40.000 0.00 0.00 0.00 3.36
365 366 6.271159 AGACTTCCAACTCAGTATCTTTCCTT 59.729 38.462 0.00 0.00 0.00 3.36
366 367 7.455008 AGACTTCCAACTCAGTATCTTTCCTTA 59.545 37.037 0.00 0.00 0.00 2.69
367 368 7.974504 ACTTCCAACTCAGTATCTTTCCTTAA 58.025 34.615 0.00 0.00 0.00 1.85
368 369 8.437575 ACTTCCAACTCAGTATCTTTCCTTAAA 58.562 33.333 0.00 0.00 0.00 1.52
369 370 9.284968 CTTCCAACTCAGTATCTTTCCTTAAAA 57.715 33.333 0.00 0.00 0.00 1.52
370 371 9.635404 TTCCAACTCAGTATCTTTCCTTAAAAA 57.365 29.630 0.00 0.00 0.00 1.94
396 397 9.533831 AAAAACTATGGTGGACTAATTGATCTT 57.466 29.630 0.00 0.00 0.00 2.40
397 398 9.533831 AAAACTATGGTGGACTAATTGATCTTT 57.466 29.630 0.00 0.00 0.00 2.52
403 404 9.699410 ATGGTGGACTAATTGATCTTTAAATCA 57.301 29.630 0.00 0.00 33.88 2.57
404 405 9.527157 TGGTGGACTAATTGATCTTTAAATCAA 57.473 29.630 6.68 6.68 46.60 2.57
427 428 9.859427 TCAATTTATGTTTTTCATGGTCATCTC 57.141 29.630 0.00 0.00 37.91 2.75
428 429 9.090692 CAATTTATGTTTTTCATGGTCATCTCC 57.909 33.333 0.00 0.00 37.91 3.71
432 433 4.824537 TGTTTTTCATGGTCATCTCCGAAA 59.175 37.500 0.00 0.00 0.00 3.46
437 438 6.588719 TTCATGGTCATCTCCGAAAATTTT 57.411 33.333 2.28 2.28 0.00 1.82
444 445 6.458888 GGTCATCTCCGAAAATTTTCCATCTC 60.459 42.308 22.15 0.69 33.68 2.75
463 464 7.497579 TCCATCTCGGAATATTTTCGATGAAAA 59.502 33.333 12.88 7.12 42.52 2.29
464 465 7.800380 CCATCTCGGAATATTTTCGATGAAAAG 59.200 37.037 12.88 4.06 39.93 2.27
465 466 8.551205 CATCTCGGAATATTTTCGATGAAAAGA 58.449 33.333 12.88 6.37 43.33 2.52
466 467 8.662781 TCTCGGAATATTTTCGATGAAAAGAT 57.337 30.769 12.88 8.23 42.66 2.40
468 469 8.432110 TCGGAATATTTTCGATGAAAAGATGA 57.568 30.769 11.53 4.32 40.86 2.92
469 470 8.888716 TCGGAATATTTTCGATGAAAAGATGAA 58.111 29.630 11.53 0.00 40.86 2.57
470 471 8.947940 CGGAATATTTTCGATGAAAAGATGAAC 58.052 33.333 11.53 7.56 40.86 3.18
476 477 8.786937 TTTTCGATGAAAAGATGAACTTTCTG 57.213 30.769 0.81 0.00 46.55 3.02
477 478 5.931532 TCGATGAAAAGATGAACTTTCTGC 58.068 37.500 0.00 0.00 46.55 4.26
494 498 9.783081 AACTTTCTGCCAAATTCTTTGATAATT 57.217 25.926 1.28 0.00 43.26 1.40
495 499 9.783081 ACTTTCTGCCAAATTCTTTGATAATTT 57.217 25.926 1.28 0.00 43.26 1.82
525 529 8.751242 TCAAATTTGATCTGATATTTTGGCTCA 58.249 29.630 16.91 0.00 31.01 4.26
529 533 7.465353 TTGATCTGATATTTTGGCTCACAAA 57.535 32.000 0.00 0.00 46.82 2.83
604 608 2.828868 GGCGATGAGGCATGGGTA 59.171 61.111 0.00 0.00 45.92 3.69
904 913 2.428085 AAACGCAAAACCCGGCCTT 61.428 52.632 0.00 0.00 0.00 4.35
1149 1418 0.405585 ATTTCCAGGACCACCACCAG 59.594 55.000 0.00 0.00 38.94 4.00
2066 2347 4.789075 AACCGATCCACCGACGCG 62.789 66.667 3.53 3.53 0.00 6.01
2082 2363 2.267642 CGCATGGAGGGACGGAAA 59.732 61.111 0.00 0.00 0.00 3.13
2111 2392 5.703130 GCTAAGAGTCCATCCATTATCAACC 59.297 44.000 0.00 0.00 0.00 3.77
2116 2397 4.351111 AGTCCATCCATTATCAACCCCTAC 59.649 45.833 0.00 0.00 0.00 3.18
2288 2574 8.145122 TGTTAATTCCATGTTTTTACCTTCCAC 58.855 33.333 0.00 0.00 0.00 4.02
2361 2653 2.838813 AGAGGAAGGGCTTAGTGGTAAC 59.161 50.000 0.00 0.00 0.00 2.50
2516 2808 2.294512 CTCCCTTGTTGTTTCTCTTGGC 59.705 50.000 0.00 0.00 0.00 4.52
2530 2822 1.079405 TTGGCCCAGTTCGATCGAC 60.079 57.895 19.26 13.05 0.00 4.20
2668 2960 6.442541 TCTCCTAGTATGTTGTTTTCCCAA 57.557 37.500 0.00 0.00 0.00 4.12
2751 3052 1.102809 CACCAGCACACCACACACAT 61.103 55.000 0.00 0.00 0.00 3.21
2896 3197 6.934645 ACGGTCTCAGAATAACTCAAAAATGA 59.065 34.615 0.00 0.00 0.00 2.57
2902 3203 8.571461 TCAGAATAACTCAAAAATGATGCTCT 57.429 30.769 0.00 0.00 0.00 4.09
2923 3224 7.051000 GCTCTAATTAGTGGTCCAATTTCTCT 58.949 38.462 12.19 0.00 0.00 3.10
2967 3269 1.000843 TGGACATTGGTGTGACTCGAG 59.999 52.381 11.84 11.84 39.09 4.04
2987 3289 7.824289 ACTCGAGATTCACAAAAAGGATTGATA 59.176 33.333 21.68 0.00 34.38 2.15
2996 3298 8.527810 TCACAAAAAGGATTGATATTGTTACCC 58.472 33.333 0.00 0.00 34.38 3.69
3002 3307 9.942850 AAAGGATTGATATTGTTACCCAAAAAG 57.057 29.630 0.00 0.00 36.44 2.27
3003 3308 8.893563 AGGATTGATATTGTTACCCAAAAAGA 57.106 30.769 0.00 0.00 36.44 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 5.617252 TCGTTATTTCTATGGGGATGGAAC 58.383 41.667 0.00 0.00 0.00 3.62
8 9 5.897851 TCGTTATTTCTATGGGGATGGAA 57.102 39.130 0.00 0.00 0.00 3.53
9 10 5.897851 TTCGTTATTTCTATGGGGATGGA 57.102 39.130 0.00 0.00 0.00 3.41
10 11 6.071952 CCATTTCGTTATTTCTATGGGGATGG 60.072 42.308 0.00 0.00 31.15 3.51
11 12 6.714810 TCCATTTCGTTATTTCTATGGGGATG 59.285 38.462 0.00 0.00 34.64 3.51
12 13 6.848069 TCCATTTCGTTATTTCTATGGGGAT 58.152 36.000 0.00 0.00 34.64 3.85
13 14 6.255294 TCCATTTCGTTATTTCTATGGGGA 57.745 37.500 0.00 0.00 34.64 4.81
14 15 6.546034 AGTTCCATTTCGTTATTTCTATGGGG 59.454 38.462 0.00 0.00 34.64 4.96
15 16 7.568199 AGTTCCATTTCGTTATTTCTATGGG 57.432 36.000 0.00 0.00 34.64 4.00
16 17 9.326413 AGTAGTTCCATTTCGTTATTTCTATGG 57.674 33.333 0.00 0.00 35.08 2.74
20 21 9.893305 CAAAAGTAGTTCCATTTCGTTATTTCT 57.107 29.630 0.00 0.00 0.00 2.52
21 22 9.124807 CCAAAAGTAGTTCCATTTCGTTATTTC 57.875 33.333 0.00 0.00 0.00 2.17
22 23 8.852135 TCCAAAAGTAGTTCCATTTCGTTATTT 58.148 29.630 0.00 0.00 0.00 1.40
23 24 8.398878 TCCAAAAGTAGTTCCATTTCGTTATT 57.601 30.769 0.00 0.00 0.00 1.40
24 25 7.989416 TCCAAAAGTAGTTCCATTTCGTTAT 57.011 32.000 0.00 0.00 0.00 1.89
25 26 7.804843 TTCCAAAAGTAGTTCCATTTCGTTA 57.195 32.000 0.00 0.00 0.00 3.18
26 27 6.702716 TTCCAAAAGTAGTTCCATTTCGTT 57.297 33.333 0.00 0.00 0.00 3.85
27 28 6.894339 ATTCCAAAAGTAGTTCCATTTCGT 57.106 33.333 0.00 0.00 0.00 3.85
28 29 9.503427 GATAATTCCAAAAGTAGTTCCATTTCG 57.497 33.333 0.00 0.00 0.00 3.46
29 30 9.503427 CGATAATTCCAAAAGTAGTTCCATTTC 57.497 33.333 0.00 0.00 0.00 2.17
30 31 8.466798 CCGATAATTCCAAAAGTAGTTCCATTT 58.533 33.333 0.00 0.00 0.00 2.32
31 32 7.416326 GCCGATAATTCCAAAAGTAGTTCCATT 60.416 37.037 0.00 0.00 0.00 3.16
32 33 6.039382 GCCGATAATTCCAAAAGTAGTTCCAT 59.961 38.462 0.00 0.00 0.00 3.41
33 34 5.355910 GCCGATAATTCCAAAAGTAGTTCCA 59.644 40.000 0.00 0.00 0.00 3.53
34 35 5.220989 GGCCGATAATTCCAAAAGTAGTTCC 60.221 44.000 0.00 0.00 0.00 3.62
35 36 5.589050 AGGCCGATAATTCCAAAAGTAGTTC 59.411 40.000 0.00 0.00 0.00 3.01
36 37 5.506708 AGGCCGATAATTCCAAAAGTAGTT 58.493 37.500 0.00 0.00 0.00 2.24
37 38 5.112129 AGGCCGATAATTCCAAAAGTAGT 57.888 39.130 0.00 0.00 0.00 2.73
38 39 4.515567 GGAGGCCGATAATTCCAAAAGTAG 59.484 45.833 0.00 0.00 0.00 2.57
39 40 4.165372 AGGAGGCCGATAATTCCAAAAGTA 59.835 41.667 9.01 0.00 32.02 2.24
40 41 3.053619 AGGAGGCCGATAATTCCAAAAGT 60.054 43.478 9.01 0.00 32.02 2.66
41 42 3.555966 AGGAGGCCGATAATTCCAAAAG 58.444 45.455 9.01 0.00 32.02 2.27
42 43 3.662759 AGGAGGCCGATAATTCCAAAA 57.337 42.857 9.01 0.00 32.02 2.44
43 44 4.993705 ATAGGAGGCCGATAATTCCAAA 57.006 40.909 9.01 0.00 32.02 3.28
44 45 6.901300 AGTATATAGGAGGCCGATAATTCCAA 59.099 38.462 9.01 0.00 32.02 3.53
45 46 6.323996 CAGTATATAGGAGGCCGATAATTCCA 59.676 42.308 9.01 0.00 32.02 3.53
46 47 6.739008 GCAGTATATAGGAGGCCGATAATTCC 60.739 46.154 0.00 0.00 0.00 3.01
47 48 6.183360 TGCAGTATATAGGAGGCCGATAATTC 60.183 42.308 0.00 0.00 0.00 2.17
48 49 5.661312 TGCAGTATATAGGAGGCCGATAATT 59.339 40.000 0.00 0.00 0.00 1.40
49 50 5.208890 TGCAGTATATAGGAGGCCGATAAT 58.791 41.667 0.00 0.00 0.00 1.28
50 51 4.606210 TGCAGTATATAGGAGGCCGATAA 58.394 43.478 0.00 0.00 0.00 1.75
51 52 4.245251 TGCAGTATATAGGAGGCCGATA 57.755 45.455 0.00 0.00 0.00 2.92
52 53 3.101643 TGCAGTATATAGGAGGCCGAT 57.898 47.619 0.00 0.00 0.00 4.18
53 54 2.597578 TGCAGTATATAGGAGGCCGA 57.402 50.000 0.00 0.00 0.00 5.54
54 55 3.895232 AATGCAGTATATAGGAGGCCG 57.105 47.619 0.00 0.00 0.00 6.13
55 56 7.829211 TCATTTAAATGCAGTATATAGGAGGCC 59.171 37.037 21.15 0.00 36.36 5.19
56 57 8.792830 TCATTTAAATGCAGTATATAGGAGGC 57.207 34.615 21.15 0.00 36.36 4.70
64 65 9.571816 TGGACATCATCATTTAAATGCAGTATA 57.428 29.630 21.15 5.51 36.36 1.47
65 66 8.467963 TGGACATCATCATTTAAATGCAGTAT 57.532 30.769 21.15 8.48 36.36 2.12
66 67 7.878547 TGGACATCATCATTTAAATGCAGTA 57.121 32.000 21.15 6.54 36.36 2.74
67 68 6.778834 TGGACATCATCATTTAAATGCAGT 57.221 33.333 21.15 14.26 36.36 4.40
68 69 7.434307 GTCTTGGACATCATCATTTAAATGCAG 59.566 37.037 21.15 15.68 33.05 4.41
69 70 7.259882 GTCTTGGACATCATCATTTAAATGCA 58.740 34.615 21.15 11.78 33.05 3.96
70 71 6.698766 GGTCTTGGACATCATCATTTAAATGC 59.301 38.462 21.15 7.14 33.80 3.56
71 72 7.703621 GTGGTCTTGGACATCATCATTTAAATG 59.296 37.037 20.13 20.13 34.49 2.32
72 73 7.415541 CGTGGTCTTGGACATCATCATTTAAAT 60.416 37.037 0.00 0.00 33.68 1.40
73 74 6.128035 CGTGGTCTTGGACATCATCATTTAAA 60.128 38.462 0.00 0.00 33.68 1.52
74 75 5.353956 CGTGGTCTTGGACATCATCATTTAA 59.646 40.000 0.14 0.00 33.68 1.52
75 76 4.875536 CGTGGTCTTGGACATCATCATTTA 59.124 41.667 0.14 0.00 33.68 1.40
76 77 3.691118 CGTGGTCTTGGACATCATCATTT 59.309 43.478 0.14 0.00 33.68 2.32
77 78 3.273434 CGTGGTCTTGGACATCATCATT 58.727 45.455 0.14 0.00 33.68 2.57
78 79 2.237143 ACGTGGTCTTGGACATCATCAT 59.763 45.455 0.00 0.00 33.68 2.45
79 80 1.623311 ACGTGGTCTTGGACATCATCA 59.377 47.619 0.00 0.00 33.68 3.07
80 81 2.271800 GACGTGGTCTTGGACATCATC 58.728 52.381 0.00 0.00 33.68 2.92
81 82 1.623311 TGACGTGGTCTTGGACATCAT 59.377 47.619 0.00 0.00 33.68 2.45
82 83 1.044611 TGACGTGGTCTTGGACATCA 58.955 50.000 0.00 0.00 33.68 3.07
83 84 1.798813 GTTGACGTGGTCTTGGACATC 59.201 52.381 0.00 0.00 33.68 3.06
84 85 1.416401 AGTTGACGTGGTCTTGGACAT 59.584 47.619 0.00 0.00 33.68 3.06
85 86 0.828022 AGTTGACGTGGTCTTGGACA 59.172 50.000 0.00 0.00 33.68 4.02
86 87 1.949465 AAGTTGACGTGGTCTTGGAC 58.051 50.000 0.00 0.00 33.15 4.02
87 88 5.670792 ATATAAGTTGACGTGGTCTTGGA 57.329 39.130 0.00 0.00 33.15 3.53
88 89 6.594159 AGAAATATAAGTTGACGTGGTCTTGG 59.406 38.462 0.00 0.00 33.15 3.61
89 90 7.596749 AGAAATATAAGTTGACGTGGTCTTG 57.403 36.000 0.00 0.00 33.15 3.02
90 91 9.715121 TTAAGAAATATAAGTTGACGTGGTCTT 57.285 29.630 0.00 0.00 33.15 3.01
91 92 9.715121 TTTAAGAAATATAAGTTGACGTGGTCT 57.285 29.630 0.00 0.00 33.15 3.85
135 136 4.932200 GCAGAGAAATAAGTGCACACTAGT 59.068 41.667 21.04 6.36 41.58 2.57
136 137 5.174395 AGCAGAGAAATAAGTGCACACTAG 58.826 41.667 21.04 5.88 41.58 2.57
137 138 5.152623 AGCAGAGAAATAAGTGCACACTA 57.847 39.130 21.04 10.38 41.58 2.74
138 139 3.999663 GAGCAGAGAAATAAGTGCACACT 59.000 43.478 21.04 8.22 44.94 3.55
139 140 3.748048 TGAGCAGAGAAATAAGTGCACAC 59.252 43.478 21.04 3.05 38.44 3.82
140 141 4.006780 TGAGCAGAGAAATAAGTGCACA 57.993 40.909 21.04 0.00 38.44 4.57
141 142 4.633126 TGATGAGCAGAGAAATAAGTGCAC 59.367 41.667 9.40 9.40 38.44 4.57
142 143 4.835678 TGATGAGCAGAGAAATAAGTGCA 58.164 39.130 0.00 0.00 38.44 4.57
143 144 5.333187 CGATGATGAGCAGAGAAATAAGTGC 60.333 44.000 0.00 0.00 36.10 4.40
144 145 5.752472 ACGATGATGAGCAGAGAAATAAGTG 59.248 40.000 0.00 0.00 0.00 3.16
145 146 5.752472 CACGATGATGAGCAGAGAAATAAGT 59.248 40.000 0.00 0.00 0.00 2.24
146 147 5.981915 TCACGATGATGAGCAGAGAAATAAG 59.018 40.000 0.00 0.00 0.00 1.73
147 148 5.750547 GTCACGATGATGAGCAGAGAAATAA 59.249 40.000 0.00 0.00 0.00 1.40
148 149 5.163519 TGTCACGATGATGAGCAGAGAAATA 60.164 40.000 0.00 0.00 0.00 1.40
149 150 4.118410 GTCACGATGATGAGCAGAGAAAT 58.882 43.478 0.00 0.00 0.00 2.17
150 151 3.056607 TGTCACGATGATGAGCAGAGAAA 60.057 43.478 0.00 0.00 0.00 2.52
151 152 2.493278 TGTCACGATGATGAGCAGAGAA 59.507 45.455 0.00 0.00 0.00 2.87
152 153 2.094675 TGTCACGATGATGAGCAGAGA 58.905 47.619 0.00 0.00 0.00 3.10
153 154 2.191802 GTGTCACGATGATGAGCAGAG 58.808 52.381 0.00 0.00 0.00 3.35
154 155 1.545582 TGTGTCACGATGATGAGCAGA 59.454 47.619 0.00 0.00 0.00 4.26
155 156 2.000429 TGTGTCACGATGATGAGCAG 58.000 50.000 0.00 0.00 0.00 4.24
156 157 2.678471 ATGTGTCACGATGATGAGCA 57.322 45.000 0.00 0.00 0.00 4.26
157 158 6.694844 CCTATATATGTGTCACGATGATGAGC 59.305 42.308 0.00 0.00 0.00 4.26
158 159 7.148000 ACCCTATATATGTGTCACGATGATGAG 60.148 40.741 0.00 0.00 0.00 2.90
159 160 6.663523 ACCCTATATATGTGTCACGATGATGA 59.336 38.462 0.00 0.00 0.00 2.92
160 161 6.867550 ACCCTATATATGTGTCACGATGATG 58.132 40.000 0.00 0.00 0.00 3.07
161 162 7.482169 AACCCTATATATGTGTCACGATGAT 57.518 36.000 0.00 0.00 0.00 2.45
162 163 6.911250 AACCCTATATATGTGTCACGATGA 57.089 37.500 0.00 0.00 0.00 2.92
163 164 7.151976 TGAAACCCTATATATGTGTCACGATG 58.848 38.462 0.00 0.00 0.00 3.84
164 165 7.015292 ACTGAAACCCTATATATGTGTCACGAT 59.985 37.037 0.00 0.00 0.00 3.73
165 166 6.322969 ACTGAAACCCTATATATGTGTCACGA 59.677 38.462 0.00 0.00 0.00 4.35
166 167 6.513180 ACTGAAACCCTATATATGTGTCACG 58.487 40.000 0.00 0.00 0.00 4.35
167 168 9.998106 ATAACTGAAACCCTATATATGTGTCAC 57.002 33.333 0.00 0.00 0.00 3.67
170 171 9.706691 CGAATAACTGAAACCCTATATATGTGT 57.293 33.333 0.00 0.00 0.00 3.72
171 172 9.923143 TCGAATAACTGAAACCCTATATATGTG 57.077 33.333 0.00 0.00 0.00 3.21
178 179 9.675464 TTTGTTATCGAATAACTGAAACCCTAT 57.325 29.630 14.56 0.00 44.17 2.57
179 180 9.158233 CTTTGTTATCGAATAACTGAAACCCTA 57.842 33.333 14.56 0.00 44.17 3.53
180 181 7.881232 TCTTTGTTATCGAATAACTGAAACCCT 59.119 33.333 14.56 0.00 44.17 4.34
181 182 8.036273 TCTTTGTTATCGAATAACTGAAACCC 57.964 34.615 14.56 0.00 44.17 4.11
196 197 8.068380 GGTTTGGCTAACGATATCTTTGTTATC 58.932 37.037 4.77 0.80 37.64 1.75
197 198 7.254658 CGGTTTGGCTAACGATATCTTTGTTAT 60.255 37.037 4.77 0.00 37.64 1.89
198 199 6.036300 CGGTTTGGCTAACGATATCTTTGTTA 59.964 38.462 4.77 3.69 37.64 2.41
199 200 5.163794 CGGTTTGGCTAACGATATCTTTGTT 60.164 40.000 4.77 2.73 37.64 2.83
200 201 4.331717 CGGTTTGGCTAACGATATCTTTGT 59.668 41.667 4.77 0.00 37.64 2.83
201 202 4.260620 CCGGTTTGGCTAACGATATCTTTG 60.261 45.833 4.77 0.00 37.64 2.77
202 203 3.875134 CCGGTTTGGCTAACGATATCTTT 59.125 43.478 5.76 0.00 37.64 2.52
203 204 3.133362 TCCGGTTTGGCTAACGATATCTT 59.867 43.478 0.00 0.00 37.64 2.40
204 205 2.696707 TCCGGTTTGGCTAACGATATCT 59.303 45.455 0.00 0.00 37.64 1.98
205 206 3.102052 TCCGGTTTGGCTAACGATATC 57.898 47.619 0.00 0.00 37.64 1.63
206 207 3.547054 TTCCGGTTTGGCTAACGATAT 57.453 42.857 0.00 0.00 37.64 1.63
207 208 3.547054 ATTCCGGTTTGGCTAACGATA 57.453 42.857 0.00 0.00 37.64 2.92
208 209 2.413310 ATTCCGGTTTGGCTAACGAT 57.587 45.000 0.00 0.00 37.64 3.73
209 210 3.002102 GTTATTCCGGTTTGGCTAACGA 58.998 45.455 0.00 0.00 37.64 3.85
210 211 2.096335 GGTTATTCCGGTTTGGCTAACG 59.904 50.000 0.00 0.00 36.87 3.18
211 212 3.083293 TGGTTATTCCGGTTTGGCTAAC 58.917 45.455 0.00 3.09 39.52 2.34
212 213 3.436577 TGGTTATTCCGGTTTGGCTAA 57.563 42.857 0.00 0.00 39.52 3.09
213 214 3.436577 TTGGTTATTCCGGTTTGGCTA 57.563 42.857 0.00 0.00 39.52 3.93
214 215 2.296073 TTGGTTATTCCGGTTTGGCT 57.704 45.000 0.00 0.00 39.52 4.75
215 216 2.297880 ACTTTGGTTATTCCGGTTTGGC 59.702 45.455 0.00 0.00 39.52 4.52
216 217 3.319689 ACACTTTGGTTATTCCGGTTTGG 59.680 43.478 0.00 0.00 39.52 3.28
217 218 4.577834 ACACTTTGGTTATTCCGGTTTG 57.422 40.909 0.00 0.00 39.52 2.93
218 219 5.601583 AAACACTTTGGTTATTCCGGTTT 57.398 34.783 0.00 0.00 39.52 3.27
219 220 5.601583 AAAACACTTTGGTTATTCCGGTT 57.398 34.783 0.00 0.00 39.52 4.44
220 221 6.265876 ACATAAAACACTTTGGTTATTCCGGT 59.734 34.615 0.00 0.00 39.52 5.28
221 222 6.683715 ACATAAAACACTTTGGTTATTCCGG 58.316 36.000 0.00 0.00 39.52 5.14
222 223 9.849166 ATTACATAAAACACTTTGGTTATTCCG 57.151 29.630 0.00 0.00 39.52 4.30
253 254 9.472361 CAATGAAGAAGTCTCATGAAACAATTT 57.528 29.630 1.27 0.00 0.00 1.82
254 255 8.853126 TCAATGAAGAAGTCTCATGAAACAATT 58.147 29.630 1.27 0.00 0.00 2.32
255 256 8.400184 TCAATGAAGAAGTCTCATGAAACAAT 57.600 30.769 1.27 0.00 0.00 2.71
256 257 7.040892 CCTCAATGAAGAAGTCTCATGAAACAA 60.041 37.037 1.27 0.00 0.00 2.83
257 258 6.429078 CCTCAATGAAGAAGTCTCATGAAACA 59.571 38.462 1.27 0.00 0.00 2.83
258 259 6.652481 TCCTCAATGAAGAAGTCTCATGAAAC 59.348 38.462 0.00 0.00 0.00 2.78
259 260 6.772605 TCCTCAATGAAGAAGTCTCATGAAA 58.227 36.000 0.00 0.00 0.00 2.69
260 261 6.364568 TCCTCAATGAAGAAGTCTCATGAA 57.635 37.500 0.00 0.00 0.00 2.57
261 262 6.155737 TCATCCTCAATGAAGAAGTCTCATGA 59.844 38.462 0.00 0.00 41.49 3.07
262 263 6.258287 GTCATCCTCAATGAAGAAGTCTCATG 59.742 42.308 0.00 0.00 45.88 3.07
263 264 6.156602 AGTCATCCTCAATGAAGAAGTCTCAT 59.843 38.462 0.00 0.00 45.88 2.90
264 265 5.483231 AGTCATCCTCAATGAAGAAGTCTCA 59.517 40.000 0.00 0.00 45.88 3.27
265 266 5.976458 AGTCATCCTCAATGAAGAAGTCTC 58.024 41.667 0.00 0.00 45.88 3.36
266 267 6.371595 AAGTCATCCTCAATGAAGAAGTCT 57.628 37.500 0.00 0.00 45.88 3.24
267 268 7.173907 TGAAAAGTCATCCTCAATGAAGAAGTC 59.826 37.037 0.00 0.00 45.88 3.01
268 269 7.000472 TGAAAAGTCATCCTCAATGAAGAAGT 59.000 34.615 0.00 0.00 45.88 3.01
269 270 7.444629 TGAAAAGTCATCCTCAATGAAGAAG 57.555 36.000 0.00 0.00 45.88 2.85
270 271 6.072286 GCTGAAAAGTCATCCTCAATGAAGAA 60.072 38.462 0.00 0.00 45.88 2.52
271 272 5.413833 GCTGAAAAGTCATCCTCAATGAAGA 59.586 40.000 0.00 0.00 45.88 2.87
272 273 5.392811 GGCTGAAAAGTCATCCTCAATGAAG 60.393 44.000 0.00 0.00 45.88 3.02
273 274 4.460382 GGCTGAAAAGTCATCCTCAATGAA 59.540 41.667 0.00 0.00 45.88 2.57
274 275 4.012374 GGCTGAAAAGTCATCCTCAATGA 58.988 43.478 0.00 0.00 42.21 2.57
275 276 3.129988 GGGCTGAAAAGTCATCCTCAATG 59.870 47.826 0.00 0.00 39.59 2.82
276 277 3.245371 TGGGCTGAAAAGTCATCCTCAAT 60.245 43.478 0.00 0.00 39.59 2.57
277 278 2.108075 TGGGCTGAAAAGTCATCCTCAA 59.892 45.455 0.00 0.00 39.59 3.02
278 279 1.704628 TGGGCTGAAAAGTCATCCTCA 59.295 47.619 0.00 0.00 39.59 3.86
279 280 2.496899 TGGGCTGAAAAGTCATCCTC 57.503 50.000 0.00 0.00 39.59 3.71
280 281 2.978156 TTGGGCTGAAAAGTCATCCT 57.022 45.000 0.00 0.00 39.59 3.24
281 282 4.541973 AATTTGGGCTGAAAAGTCATCC 57.458 40.909 0.00 0.00 39.03 3.51
282 283 6.866010 AAAAATTTGGGCTGAAAAGTCATC 57.134 33.333 0.00 0.00 31.85 2.92
310 311 9.921637 GAGGTTATTTCAAATTCCACAACATTA 57.078 29.630 6.75 0.00 0.00 1.90
311 312 8.428063 TGAGGTTATTTCAAATTCCACAACATT 58.572 29.630 6.75 0.00 0.00 2.71
312 313 7.961351 TGAGGTTATTTCAAATTCCACAACAT 58.039 30.769 6.75 0.00 0.00 2.71
313 314 7.353414 TGAGGTTATTTCAAATTCCACAACA 57.647 32.000 6.75 0.00 0.00 3.33
314 315 8.087750 TCATGAGGTTATTTCAAATTCCACAAC 58.912 33.333 0.00 0.00 0.00 3.32
315 316 8.187913 TCATGAGGTTATTTCAAATTCCACAA 57.812 30.769 0.00 0.00 0.00 3.33
316 317 7.669304 TCTCATGAGGTTATTTCAAATTCCACA 59.331 33.333 22.42 6.62 0.00 4.17
317 318 7.970614 GTCTCATGAGGTTATTTCAAATTCCAC 59.029 37.037 22.42 3.42 0.00 4.02
318 319 7.890127 AGTCTCATGAGGTTATTTCAAATTCCA 59.110 33.333 22.42 0.00 0.00 3.53
319 320 8.286191 AGTCTCATGAGGTTATTTCAAATTCC 57.714 34.615 22.42 0.00 0.00 3.01
320 321 9.780413 GAAGTCTCATGAGGTTATTTCAAATTC 57.220 33.333 22.42 10.57 0.00 2.17
321 322 8.743714 GGAAGTCTCATGAGGTTATTTCAAATT 58.256 33.333 22.42 5.35 0.00 1.82
322 323 7.890127 TGGAAGTCTCATGAGGTTATTTCAAAT 59.110 33.333 22.42 0.00 0.00 2.32
323 324 7.230747 TGGAAGTCTCATGAGGTTATTTCAAA 58.769 34.615 22.42 5.95 0.00 2.69
324 325 6.778821 TGGAAGTCTCATGAGGTTATTTCAA 58.221 36.000 22.42 6.96 0.00 2.69
325 326 6.373005 TGGAAGTCTCATGAGGTTATTTCA 57.627 37.500 22.42 13.29 0.00 2.69
326 327 6.881602 AGTTGGAAGTCTCATGAGGTTATTTC 59.118 38.462 22.42 14.47 0.00 2.17
327 328 6.784031 AGTTGGAAGTCTCATGAGGTTATTT 58.216 36.000 22.42 6.62 0.00 1.40
328 329 6.013379 TGAGTTGGAAGTCTCATGAGGTTATT 60.013 38.462 22.42 11.72 36.04 1.40
329 330 5.485353 TGAGTTGGAAGTCTCATGAGGTTAT 59.515 40.000 22.42 6.88 36.04 1.89
330 331 4.838423 TGAGTTGGAAGTCTCATGAGGTTA 59.162 41.667 22.42 0.19 36.04 2.85
331 332 3.648067 TGAGTTGGAAGTCTCATGAGGTT 59.352 43.478 22.42 15.67 36.04 3.50
332 333 3.242867 TGAGTTGGAAGTCTCATGAGGT 58.757 45.455 22.42 7.74 36.04 3.85
333 334 3.260380 ACTGAGTTGGAAGTCTCATGAGG 59.740 47.826 22.42 4.43 39.48 3.86
334 335 4.533919 ACTGAGTTGGAAGTCTCATGAG 57.466 45.455 17.07 17.07 39.48 2.90
335 336 5.954752 AGATACTGAGTTGGAAGTCTCATGA 59.045 40.000 0.00 0.00 39.48 3.07
336 337 6.219417 AGATACTGAGTTGGAAGTCTCATG 57.781 41.667 0.00 0.00 39.48 3.07
337 338 6.865834 AAGATACTGAGTTGGAAGTCTCAT 57.134 37.500 0.00 0.00 39.48 2.90
338 339 6.295349 GGAAAGATACTGAGTTGGAAGTCTCA 60.295 42.308 0.00 0.00 38.20 3.27
339 340 6.071051 AGGAAAGATACTGAGTTGGAAGTCTC 60.071 42.308 0.00 0.00 0.00 3.36
340 341 5.782845 AGGAAAGATACTGAGTTGGAAGTCT 59.217 40.000 0.00 0.00 0.00 3.24
341 342 6.043854 AGGAAAGATACTGAGTTGGAAGTC 57.956 41.667 0.00 0.00 0.00 3.01
342 343 6.441088 AAGGAAAGATACTGAGTTGGAAGT 57.559 37.500 0.00 0.00 0.00 3.01
343 344 8.848474 TTTAAGGAAAGATACTGAGTTGGAAG 57.152 34.615 0.00 0.00 0.00 3.46
344 345 9.635404 TTTTTAAGGAAAGATACTGAGTTGGAA 57.365 29.630 0.00 0.00 0.00 3.53
370 371 9.533831 AAGATCAATTAGTCCACCATAGTTTTT 57.466 29.630 0.00 0.00 0.00 1.94
371 372 9.533831 AAAGATCAATTAGTCCACCATAGTTTT 57.466 29.630 0.00 0.00 0.00 2.43
377 378 9.699410 TGATTTAAAGATCAATTAGTCCACCAT 57.301 29.630 0.00 0.00 33.31 3.55
378 379 9.527157 TTGATTTAAAGATCAATTAGTCCACCA 57.473 29.630 0.00 0.00 40.20 4.17
401 402 9.859427 GAGATGACCATGAAAAACATAAATTGA 57.141 29.630 0.00 0.00 37.46 2.57
402 403 9.090692 GGAGATGACCATGAAAAACATAAATTG 57.909 33.333 0.00 0.00 37.46 2.32
403 404 7.975616 CGGAGATGACCATGAAAAACATAAATT 59.024 33.333 0.00 0.00 37.46 1.82
404 405 7.339212 TCGGAGATGACCATGAAAAACATAAAT 59.661 33.333 0.00 0.00 37.46 1.40
405 406 6.657117 TCGGAGATGACCATGAAAAACATAAA 59.343 34.615 0.00 0.00 37.46 1.40
406 407 6.176896 TCGGAGATGACCATGAAAAACATAA 58.823 36.000 0.00 0.00 37.46 1.90
407 408 5.739959 TCGGAGATGACCATGAAAAACATA 58.260 37.500 0.00 0.00 37.46 2.29
408 409 4.588899 TCGGAGATGACCATGAAAAACAT 58.411 39.130 0.00 0.00 40.17 2.71
409 410 4.014569 TCGGAGATGACCATGAAAAACA 57.985 40.909 0.00 0.00 0.00 2.83
410 411 5.371115 TTTCGGAGATGACCATGAAAAAC 57.629 39.130 0.00 0.00 35.04 2.43
411 412 6.588719 ATTTTCGGAGATGACCATGAAAAA 57.411 33.333 0.00 0.00 38.39 1.94
412 413 6.588719 AATTTTCGGAGATGACCATGAAAA 57.411 33.333 0.00 7.79 38.98 2.29
413 414 6.588719 AAATTTTCGGAGATGACCATGAAA 57.411 33.333 0.00 0.00 35.04 2.69
414 415 6.350110 GGAAAATTTTCGGAGATGACCATGAA 60.350 38.462 21.53 0.00 38.06 2.57
415 416 5.125417 GGAAAATTTTCGGAGATGACCATGA 59.875 40.000 21.53 0.00 38.06 3.07
416 417 5.105797 TGGAAAATTTTCGGAGATGACCATG 60.106 40.000 21.53 0.00 38.06 3.66
417 418 5.016173 TGGAAAATTTTCGGAGATGACCAT 58.984 37.500 21.53 0.00 38.06 3.55
418 419 4.402829 TGGAAAATTTTCGGAGATGACCA 58.597 39.130 21.53 10.59 38.06 4.02
419 420 5.358160 AGATGGAAAATTTTCGGAGATGACC 59.642 40.000 21.53 8.33 38.06 4.02
420 421 6.442513 AGATGGAAAATTTTCGGAGATGAC 57.557 37.500 21.53 8.30 38.06 3.06
421 422 5.294306 CGAGATGGAAAATTTTCGGAGATGA 59.706 40.000 21.53 3.35 38.06 2.92
422 423 5.505286 CGAGATGGAAAATTTTCGGAGATG 58.495 41.667 21.53 8.95 38.06 2.90
423 424 5.741388 CGAGATGGAAAATTTTCGGAGAT 57.259 39.130 21.53 12.17 38.06 2.75
437 438 7.497579 TTTTCATCGAAAATATTCCGAGATGGA 59.502 33.333 15.09 8.63 39.61 3.41
444 445 8.947940 GTTCATCTTTTCATCGAAAATATTCCG 58.052 33.333 2.59 4.41 40.14 4.30
463 464 6.661304 AAGAATTTGGCAGAAAGTTCATCT 57.339 33.333 0.00 0.00 30.47 2.90
500 504 8.814235 GTGAGCCAAAATATCAGATCAAATTTG 58.186 33.333 12.15 12.15 0.00 2.32
501 505 8.533657 TGTGAGCCAAAATATCAGATCAAATTT 58.466 29.630 0.00 0.00 0.00 1.82
510 514 8.295288 GGAGATATTTGTGAGCCAAAATATCAG 58.705 37.037 21.29 0.00 45.72 2.90
514 518 6.321181 GGTGGAGATATTTGTGAGCCAAAATA 59.679 38.462 0.00 0.00 45.72 1.40
522 526 6.510157 CGAATTTCGGTGGAGATATTTGTGAG 60.510 42.308 10.95 0.00 36.00 3.51
525 529 5.734855 CGAATTTCGGTGGAGATATTTGT 57.265 39.130 10.95 0.00 36.00 2.83
597 601 1.204941 GCCGGTAGAGCTATACCCATG 59.795 57.143 27.64 18.45 41.98 3.66
604 608 3.303928 GCGGGCCGGTAGAGCTAT 61.304 66.667 29.48 0.00 0.00 2.97
639 643 2.780643 CATGTCTCGTTGCAGGCG 59.219 61.111 6.44 6.44 0.00 5.52
904 913 1.302511 GGAGGCGGTCAAAGCTCAA 60.303 57.895 0.00 0.00 34.52 3.02
2066 2347 2.106683 CGTTTCCGTCCCTCCATGC 61.107 63.158 0.00 0.00 0.00 4.06
2082 2363 2.457598 TGGATGGACTCTTAGCTTCGT 58.542 47.619 0.00 0.00 0.00 3.85
2096 2377 3.657727 AGGTAGGGGTTGATAATGGATGG 59.342 47.826 0.00 0.00 0.00 3.51
2111 2392 4.323104 GCATAATTAGCAGAGGAGGTAGGG 60.323 50.000 0.00 0.00 0.00 3.53
2116 2397 3.582208 AGGAGCATAATTAGCAGAGGAGG 59.418 47.826 8.84 0.00 0.00 4.30
2166 2451 5.332355 GCAGTCTGTAACAAGAGTAACAACG 60.332 44.000 0.93 0.00 0.00 4.10
2271 2557 2.565391 GGGGGTGGAAGGTAAAAACATG 59.435 50.000 0.00 0.00 0.00 3.21
2288 2574 1.831106 GCTTGATTGGGTAAAAGGGGG 59.169 52.381 0.00 0.00 0.00 5.40
2361 2653 8.764524 ACAAAGCTTCTACTACTTGATTGTAG 57.235 34.615 0.00 0.00 43.88 2.74
2516 2808 1.681793 AGTATGGTCGATCGAACTGGG 59.318 52.381 31.43 0.00 32.08 4.45
2549 2841 7.909641 CGATTTGTATGTATGAATGCAGAAACA 59.090 33.333 0.00 0.00 0.00 2.83
2668 2960 2.944349 CCAGCAAACAAGCAACCAAAAT 59.056 40.909 0.00 0.00 36.85 1.82
2705 2997 2.048603 GGGCTTGCTGCTAGGTTGG 61.049 63.158 12.76 0.00 42.39 3.77
2751 3052 9.899661 AGACATAAAATATAGCAAGGTTGTGTA 57.100 29.630 0.00 0.00 0.00 2.90
2896 3197 7.349598 AGAAATTGGACCACTAATTAGAGCAT 58.650 34.615 19.38 2.35 36.45 3.79
2902 3203 7.279313 GCGTTAGAGAAATTGGACCACTAATTA 59.721 37.037 0.00 0.00 36.45 1.40
2906 3207 4.222145 AGCGTTAGAGAAATTGGACCACTA 59.778 41.667 0.00 0.00 0.00 2.74
2923 3224 6.811253 AAACATTATGGACAGAAAGCGTTA 57.189 33.333 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.