Multiple sequence alignment - TraesCS7D01G058600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G058600 chr7D 100.000 2213 0 0 1 2213 31578843 31581055 0.000000e+00 4087.0
1 TraesCS7D01G058600 chr7D 87.554 1398 136 18 693 2066 31487107 31488490 0.000000e+00 1583.0
2 TraesCS7D01G058600 chr7D 87.334 829 64 24 811 1631 31480000 31480795 0.000000e+00 911.0
3 TraesCS7D01G058600 chr7D 77.884 1049 150 52 694 1709 31570275 31571274 5.300000e-161 577.0
4 TraesCS7D01G058600 chr7D 87.500 496 57 5 5 497 31479395 31479888 3.190000e-158 568.0
5 TraesCS7D01G058600 chr7D 79.892 557 85 18 699 1244 31474218 31474758 1.240000e-102 383.0
6 TraesCS7D01G058600 chr7D 77.778 252 36 13 389 636 31458601 31458836 1.070000e-28 137.0
7 TraesCS7D01G058600 chr7D 79.343 213 30 7 693 892 31579268 31579479 1.070000e-28 137.0
8 TraesCS7D01G058600 chr7D 79.343 213 30 7 426 637 31579535 31579734 1.070000e-28 137.0
9 TraesCS7D01G058600 chr7D 97.333 75 2 0 693 767 31479817 31479891 6.410000e-26 128.0
10 TraesCS7D01G058600 chr7D 77.949 195 29 5 1706 1886 163200874 163201068 2.320000e-20 110.0
11 TraesCS7D01G058600 chr7D 79.200 125 19 1 321 445 31566099 31566216 1.820000e-11 80.5
12 TraesCS7D01G058600 chr4A 90.013 761 56 10 1323 2066 696105523 696104766 0.000000e+00 966.0
13 TraesCS7D01G058600 chr4A 87.585 588 46 14 871 1453 696079313 696078748 0.000000e+00 656.0
14 TraesCS7D01G058600 chr4A 85.656 488 46 3 10 497 696079913 696079450 1.970000e-135 492.0
15 TraesCS7D01G058600 chr4A 79.646 452 65 15 797 1237 696082436 696082001 1.280000e-77 300.0
16 TraesCS7D01G058600 chr4A 76.582 632 92 32 693 1317 696118095 696117513 1.660000e-76 296.0
17 TraesCS7D01G058600 chr4A 82.803 314 38 7 327 637 696106340 696106040 1.300000e-67 267.0
18 TraesCS7D01G058600 chr4A 95.536 112 5 0 385 496 696118136 696118025 1.750000e-41 180.0
19 TraesCS7D01G058600 chr4A 92.308 78 6 0 693 770 696079521 696079444 6.460000e-21 111.0
20 TraesCS7D01G058600 chr3B 85.714 112 12 4 1704 1813 107640585 107640694 4.990000e-22 115.0
21 TraesCS7D01G058600 chr3B 82.418 91 16 0 1707 1797 16048404 16048314 1.820000e-11 80.5
22 TraesCS7D01G058600 chr3A 76.963 191 35 6 1704 1885 624959156 624958966 1.400000e-17 100.0
23 TraesCS7D01G058600 chr3A 77.095 179 33 5 1706 1876 66355649 66355827 1.810000e-16 97.1
24 TraesCS7D01G058600 chr6D 86.170 94 8 3 1796 1885 440211669 440211577 1.810000e-16 97.1
25 TraesCS7D01G058600 chr7A 80.800 125 16 2 321 444 31978508 31978625 8.410000e-15 91.6
26 TraesCS7D01G058600 chr7A 81.818 99 17 1 1706 1804 536776122 536776025 5.060000e-12 82.4
27 TraesCS7D01G058600 chr2B 77.128 188 22 13 1706 1876 495146558 495146741 3.030000e-14 89.8
28 TraesCS7D01G058600 chr2A 85.333 75 11 0 1803 1877 688224911 688224985 6.550000e-11 78.7
29 TraesCS7D01G058600 chr2A 74.866 187 32 7 1706 1877 66787062 66787248 1.100000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G058600 chr7D 31578843 31581055 2212 False 1453.666667 4087 86.228667 1 2213 3 chr7D.!!$F8 2212
1 TraesCS7D01G058600 chr7D 31487107 31488490 1383 False 1583.000000 1583 87.554000 693 2066 1 chr7D.!!$F3 1373
2 TraesCS7D01G058600 chr7D 31570275 31571274 999 False 577.000000 577 77.884000 694 1709 1 chr7D.!!$F5 1015
3 TraesCS7D01G058600 chr7D 31479395 31480795 1400 False 535.666667 911 90.722333 5 1631 3 chr7D.!!$F7 1626
4 TraesCS7D01G058600 chr7D 31474218 31474758 540 False 383.000000 383 79.892000 699 1244 1 chr7D.!!$F2 545
5 TraesCS7D01G058600 chr4A 696104766 696106340 1574 True 616.500000 966 86.408000 327 2066 2 chr4A.!!$R2 1739
6 TraesCS7D01G058600 chr4A 696078748 696082436 3688 True 389.750000 656 86.298750 10 1453 4 chr4A.!!$R1 1443
7 TraesCS7D01G058600 chr4A 696117513 696118136 623 True 238.000000 296 86.059000 385 1317 2 chr4A.!!$R3 932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 3605 0.178935 CCCATCTCCTCTCCTCTCCC 60.179 65.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 4898 0.107752 GCAGCTAGCTTCTCTGCCTT 60.108 55.0 16.46 0.0 45.34 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 2555 0.460811 GCATCCAGATGAGCACGTGA 60.461 55.000 22.23 0.00 41.20 4.35
54 2569 0.541863 ACGTGATAGAAAGGGCCCAG 59.458 55.000 27.56 4.01 0.00 4.45
108 2623 3.389329 ACCTTCATGACCGCATCTAGATT 59.611 43.478 1.33 0.00 30.68 2.40
137 2652 0.188342 AGGAAGGGCAAAGGAGCAAA 59.812 50.000 0.00 0.00 35.83 3.68
138 2653 1.203225 AGGAAGGGCAAAGGAGCAAAT 60.203 47.619 0.00 0.00 35.83 2.32
148 2663 2.941210 GGAGCAAATGTTCCGGTGA 58.059 52.632 0.00 0.00 35.74 4.02
168 2683 2.358737 CCGACCACCAACCAGAGC 60.359 66.667 0.00 0.00 0.00 4.09
192 2707 3.103911 CGGACGACAACTGCCGAC 61.104 66.667 0.00 0.00 46.29 4.79
193 2708 2.028484 GGACGACAACTGCCGACA 59.972 61.111 0.00 0.00 0.00 4.35
195 2710 0.949105 GGACGACAACTGCCGACAAT 60.949 55.000 0.00 0.00 0.00 2.71
211 2726 1.077429 AATGGCGAGGGAGAAAGGC 60.077 57.895 0.00 0.00 0.00 4.35
371 2888 2.489329 ACAGGATTGCTTCGGATTTGTG 59.511 45.455 0.00 0.00 0.00 3.33
430 2947 2.820922 CGCATGCAGCACAGCCTA 60.821 61.111 19.57 0.00 46.13 3.93
467 2987 3.133141 AGAGAAGGTCAAAGAAGGTGC 57.867 47.619 0.00 0.00 0.00 5.01
532 3052 5.599359 GCCCGAGCTAAAAAGATAAGATC 57.401 43.478 0.00 0.00 35.50 2.75
533 3053 4.452795 GCCCGAGCTAAAAAGATAAGATCC 59.547 45.833 0.00 0.00 35.50 3.36
534 3054 4.686554 CCCGAGCTAAAAAGATAAGATCCG 59.313 45.833 0.00 0.00 0.00 4.18
535 3055 5.509163 CCCGAGCTAAAAAGATAAGATCCGA 60.509 44.000 0.00 0.00 0.00 4.55
536 3056 6.159988 CCGAGCTAAAAAGATAAGATCCGAT 58.840 40.000 0.00 0.00 0.00 4.18
537 3057 6.090088 CCGAGCTAAAAAGATAAGATCCGATG 59.910 42.308 0.00 0.00 0.00 3.84
538 3058 6.400515 CGAGCTAAAAAGATAAGATCCGATGC 60.401 42.308 0.00 0.00 0.00 3.91
539 3059 5.406780 AGCTAAAAAGATAAGATCCGATGCG 59.593 40.000 0.00 0.00 0.00 4.73
540 3060 5.405571 GCTAAAAAGATAAGATCCGATGCGA 59.594 40.000 0.00 0.00 0.00 5.10
541 3061 6.091441 GCTAAAAAGATAAGATCCGATGCGAT 59.909 38.462 0.00 0.00 0.00 4.58
542 3062 6.473397 AAAAAGATAAGATCCGATGCGATC 57.527 37.500 0.00 0.00 39.21 3.69
553 3073 1.066914 GATGCGATCGATGCTCTTCC 58.933 55.000 21.57 0.00 0.00 3.46
554 3074 0.390492 ATGCGATCGATGCTCTTCCA 59.610 50.000 21.57 3.83 0.00 3.53
555 3075 0.249197 TGCGATCGATGCTCTTCCAG 60.249 55.000 21.57 0.00 0.00 3.86
556 3076 0.249238 GCGATCGATGCTCTTCCAGT 60.249 55.000 21.57 0.00 0.00 4.00
557 3077 1.764851 CGATCGATGCTCTTCCAGTC 58.235 55.000 10.26 0.00 0.00 3.51
558 3078 1.066152 CGATCGATGCTCTTCCAGTCA 59.934 52.381 10.26 0.00 0.00 3.41
559 3079 2.480244 CGATCGATGCTCTTCCAGTCAA 60.480 50.000 10.26 0.00 0.00 3.18
560 3080 2.370281 TCGATGCTCTTCCAGTCAAC 57.630 50.000 0.00 0.00 0.00 3.18
561 3081 1.618343 TCGATGCTCTTCCAGTCAACA 59.382 47.619 0.00 0.00 0.00 3.33
562 3082 2.037121 TCGATGCTCTTCCAGTCAACAA 59.963 45.455 0.00 0.00 0.00 2.83
563 3083 3.005554 CGATGCTCTTCCAGTCAACAAT 58.994 45.455 0.00 0.00 0.00 2.71
564 3084 3.181513 CGATGCTCTTCCAGTCAACAATG 60.182 47.826 0.00 0.00 0.00 2.82
565 3085 3.213206 TGCTCTTCCAGTCAACAATGT 57.787 42.857 0.00 0.00 0.00 2.71
566 3086 4.350368 TGCTCTTCCAGTCAACAATGTA 57.650 40.909 0.00 0.00 0.00 2.29
567 3087 4.910195 TGCTCTTCCAGTCAACAATGTAT 58.090 39.130 0.00 0.00 0.00 2.29
568 3088 5.316167 TGCTCTTCCAGTCAACAATGTATT 58.684 37.500 0.00 0.00 0.00 1.89
569 3089 5.181811 TGCTCTTCCAGTCAACAATGTATTG 59.818 40.000 3.17 3.17 43.26 1.90
582 3102 4.836825 CAATGTATTGTGAGGTCTCCTGT 58.163 43.478 0.00 0.00 31.16 4.00
583 3103 3.961480 TGTATTGTGAGGTCTCCTGTG 57.039 47.619 0.00 0.00 31.76 3.66
584 3104 2.567169 TGTATTGTGAGGTCTCCTGTGG 59.433 50.000 0.00 0.00 31.76 4.17
585 3105 2.030027 ATTGTGAGGTCTCCTGTGGA 57.970 50.000 0.00 0.00 31.76 4.02
586 3106 2.030027 TTGTGAGGTCTCCTGTGGAT 57.970 50.000 0.00 0.00 31.76 3.41
587 3107 2.919772 TGTGAGGTCTCCTGTGGATA 57.080 50.000 0.00 0.00 31.76 2.59
588 3108 3.404869 TGTGAGGTCTCCTGTGGATAT 57.595 47.619 0.00 0.00 31.76 1.63
589 3109 4.536295 TGTGAGGTCTCCTGTGGATATA 57.464 45.455 0.00 0.00 31.76 0.86
590 3110 4.878968 TGTGAGGTCTCCTGTGGATATAA 58.121 43.478 0.00 0.00 31.76 0.98
591 3111 4.895889 TGTGAGGTCTCCTGTGGATATAAG 59.104 45.833 0.00 0.00 31.76 1.73
592 3112 5.141182 GTGAGGTCTCCTGTGGATATAAGA 58.859 45.833 0.00 0.00 31.76 2.10
593 3113 5.598830 GTGAGGTCTCCTGTGGATATAAGAA 59.401 44.000 0.00 0.00 31.76 2.52
594 3114 6.268847 GTGAGGTCTCCTGTGGATATAAGAAT 59.731 42.308 0.00 0.00 31.76 2.40
595 3115 6.268617 TGAGGTCTCCTGTGGATATAAGAATG 59.731 42.308 0.00 0.00 31.76 2.67
596 3116 6.146760 AGGTCTCCTGTGGATATAAGAATGT 58.853 40.000 0.00 0.00 29.57 2.71
597 3117 7.306013 AGGTCTCCTGTGGATATAAGAATGTA 58.694 38.462 0.00 0.00 29.57 2.29
598 3118 7.789831 AGGTCTCCTGTGGATATAAGAATGTAA 59.210 37.037 0.00 0.00 29.57 2.41
599 3119 7.873505 GGTCTCCTGTGGATATAAGAATGTAAC 59.126 40.741 0.00 0.00 0.00 2.50
600 3120 7.595502 GTCTCCTGTGGATATAAGAATGTAACG 59.404 40.741 0.00 0.00 0.00 3.18
601 3121 7.287005 TCTCCTGTGGATATAAGAATGTAACGT 59.713 37.037 0.00 0.00 0.00 3.99
602 3122 8.467963 TCCTGTGGATATAAGAATGTAACGTA 57.532 34.615 0.00 0.00 0.00 3.57
603 3123 8.916062 TCCTGTGGATATAAGAATGTAACGTAA 58.084 33.333 0.00 0.00 0.00 3.18
629 3149 2.969628 AAACCGTGGTGCAAAATTCA 57.030 40.000 0.00 0.00 0.00 2.57
630 3150 2.969628 AACCGTGGTGCAAAATTCAA 57.030 40.000 0.00 0.00 0.00 2.69
631 3151 2.969628 ACCGTGGTGCAAAATTCAAA 57.030 40.000 0.00 0.00 0.00 2.69
632 3152 2.545731 ACCGTGGTGCAAAATTCAAAC 58.454 42.857 0.00 0.00 0.00 2.93
633 3153 2.167487 ACCGTGGTGCAAAATTCAAACT 59.833 40.909 0.00 0.00 0.00 2.66
634 3154 3.381908 ACCGTGGTGCAAAATTCAAACTA 59.618 39.130 0.00 0.00 0.00 2.24
635 3155 3.733727 CCGTGGTGCAAAATTCAAACTAC 59.266 43.478 0.00 0.00 0.00 2.73
636 3156 4.355437 CGTGGTGCAAAATTCAAACTACA 58.645 39.130 0.00 0.00 0.00 2.74
637 3157 4.206200 CGTGGTGCAAAATTCAAACTACAC 59.794 41.667 0.00 0.00 0.00 2.90
638 3158 5.348164 GTGGTGCAAAATTCAAACTACACT 58.652 37.500 0.00 0.00 0.00 3.55
639 3159 6.500041 GTGGTGCAAAATTCAAACTACACTA 58.500 36.000 0.00 0.00 0.00 2.74
640 3160 6.416750 GTGGTGCAAAATTCAAACTACACTAC 59.583 38.462 0.00 0.00 32.48 2.73
641 3161 6.095580 TGGTGCAAAATTCAAACTACACTACA 59.904 34.615 0.00 0.00 0.00 2.74
642 3162 7.145323 GGTGCAAAATTCAAACTACACTACAT 58.855 34.615 0.00 0.00 0.00 2.29
643 3163 7.114811 GGTGCAAAATTCAAACTACACTACATG 59.885 37.037 0.00 0.00 0.00 3.21
644 3164 7.114811 GTGCAAAATTCAAACTACACTACATGG 59.885 37.037 0.00 0.00 0.00 3.66
645 3165 7.013750 TGCAAAATTCAAACTACACTACATGGA 59.986 33.333 0.00 0.00 0.00 3.41
646 3166 7.538678 GCAAAATTCAAACTACACTACATGGAG 59.461 37.037 2.41 2.41 46.10 3.86
647 3167 6.743575 AATTCAAACTACACTACATGGAGC 57.256 37.500 4.32 0.00 44.20 4.70
648 3168 5.483685 TTCAAACTACACTACATGGAGCT 57.516 39.130 4.32 0.00 44.20 4.09
649 3169 5.483685 TCAAACTACACTACATGGAGCTT 57.516 39.130 4.32 0.00 44.20 3.74
650 3170 5.479306 TCAAACTACACTACATGGAGCTTC 58.521 41.667 4.32 0.00 44.20 3.86
651 3171 5.011635 TCAAACTACACTACATGGAGCTTCA 59.988 40.000 4.32 0.00 44.20 3.02
652 3172 5.683876 AACTACACTACATGGAGCTTCAT 57.316 39.130 4.32 0.01 44.20 2.57
653 3173 5.683876 ACTACACTACATGGAGCTTCATT 57.316 39.130 4.17 0.00 44.20 2.57
654 3174 5.665459 ACTACACTACATGGAGCTTCATTC 58.335 41.667 4.17 0.00 44.20 2.67
655 3175 4.558226 ACACTACATGGAGCTTCATTCA 57.442 40.909 4.17 0.00 0.00 2.57
656 3176 5.108187 ACACTACATGGAGCTTCATTCAT 57.892 39.130 4.17 0.00 0.00 2.57
657 3177 5.503927 ACACTACATGGAGCTTCATTCATT 58.496 37.500 4.17 0.00 0.00 2.57
658 3178 6.653020 ACACTACATGGAGCTTCATTCATTA 58.347 36.000 4.17 0.00 0.00 1.90
659 3179 7.112122 ACACTACATGGAGCTTCATTCATTAA 58.888 34.615 4.17 0.00 0.00 1.40
660 3180 7.776969 ACACTACATGGAGCTTCATTCATTAAT 59.223 33.333 4.17 0.00 0.00 1.40
661 3181 8.288208 CACTACATGGAGCTTCATTCATTAATC 58.712 37.037 4.17 0.00 0.00 1.75
662 3182 7.994911 ACTACATGGAGCTTCATTCATTAATCA 59.005 33.333 4.17 0.00 0.00 2.57
663 3183 7.649533 ACATGGAGCTTCATTCATTAATCAA 57.350 32.000 4.17 0.00 0.00 2.57
664 3184 7.486647 ACATGGAGCTTCATTCATTAATCAAC 58.513 34.615 4.17 0.00 0.00 3.18
665 3185 7.341256 ACATGGAGCTTCATTCATTAATCAACT 59.659 33.333 4.17 0.00 0.00 3.16
666 3186 8.843262 CATGGAGCTTCATTCATTAATCAACTA 58.157 33.333 4.17 0.00 0.00 2.24
667 3187 8.213518 TGGAGCTTCATTCATTAATCAACTAC 57.786 34.615 0.00 0.00 0.00 2.73
668 3188 8.049117 TGGAGCTTCATTCATTAATCAACTACT 58.951 33.333 0.00 0.00 0.00 2.57
669 3189 9.547753 GGAGCTTCATTCATTAATCAACTACTA 57.452 33.333 0.00 0.00 0.00 1.82
705 3225 4.841246 ACCTATAGATAGCCTGGGTTCAAG 59.159 45.833 2.65 2.04 0.00 3.02
710 3230 2.579410 TAGCCTGGGTTCAAGGAAAC 57.421 50.000 2.65 0.00 0.00 2.78
731 3251 5.012328 ACAGAAGAGAACGTCAAAGAAGT 57.988 39.130 0.00 0.00 0.00 3.01
783 3373 0.606604 TTGGACCTCGAGCTAACACC 59.393 55.000 6.99 4.11 0.00 4.16
784 3374 1.139095 GGACCTCGAGCTAACACCG 59.861 63.158 6.99 0.00 0.00 4.94
825 3415 6.275494 TCTTCCAGTCAACAATGTATCGTA 57.725 37.500 0.00 0.00 0.00 3.43
830 3420 5.291128 CCAGTCAACAATGTATCGTAAGGTC 59.709 44.000 0.00 0.00 38.47 3.85
838 3428 3.959293 TGTATCGTAAGGTCTCCACTCA 58.041 45.455 0.00 0.00 38.47 3.41
915 3507 9.664332 ACATGATGCTTCCTTATTCATCTATAC 57.336 33.333 0.00 0.00 37.00 1.47
916 3508 9.887629 CATGATGCTTCCTTATTCATCTATACT 57.112 33.333 0.00 0.00 37.00 2.12
917 3509 9.887629 ATGATGCTTCCTTATTCATCTATACTG 57.112 33.333 0.00 0.00 37.00 2.74
918 3510 7.821359 TGATGCTTCCTTATTCATCTATACTGC 59.179 37.037 0.00 0.00 37.00 4.40
919 3511 7.308450 TGCTTCCTTATTCATCTATACTGCT 57.692 36.000 0.00 0.00 0.00 4.24
920 3512 8.422577 TGCTTCCTTATTCATCTATACTGCTA 57.577 34.615 0.00 0.00 0.00 3.49
948 3544 4.541648 ATAGCGTCCCCGGCTCCT 62.542 66.667 0.00 0.00 41.80 3.69
965 3575 3.754965 CTCCTGTCTGATCAACCCAAAA 58.245 45.455 0.00 0.00 0.00 2.44
966 3576 3.754965 TCCTGTCTGATCAACCCAAAAG 58.245 45.455 0.00 0.00 0.00 2.27
967 3577 2.229784 CCTGTCTGATCAACCCAAAAGC 59.770 50.000 0.00 0.00 0.00 3.51
968 3578 2.886523 CTGTCTGATCAACCCAAAAGCA 59.113 45.455 0.00 0.00 0.00 3.91
969 3579 3.499338 TGTCTGATCAACCCAAAAGCAT 58.501 40.909 0.00 0.00 0.00 3.79
970 3580 4.661222 TGTCTGATCAACCCAAAAGCATA 58.339 39.130 0.00 0.00 0.00 3.14
971 3581 4.458989 TGTCTGATCAACCCAAAAGCATAC 59.541 41.667 0.00 0.00 0.00 2.39
972 3582 4.016444 TCTGATCAACCCAAAAGCATACC 58.984 43.478 0.00 0.00 0.00 2.73
991 3605 0.178935 CCCATCTCCTCTCCTCTCCC 60.179 65.000 0.00 0.00 0.00 4.30
1162 3776 0.112412 GAAAGGGAAGTTCTGCCCCA 59.888 55.000 12.04 0.00 45.89 4.96
1208 3822 2.361104 GGCCAAATGCGAGTCCCA 60.361 61.111 0.00 0.00 42.61 4.37
1342 4086 3.627395 TTGTAAGCCCTGTATGTCTGG 57.373 47.619 0.00 0.00 35.32 3.86
1454 4208 6.260377 TCTTCGTTCCACAGTGTATATTACG 58.740 40.000 0.00 2.55 0.00 3.18
1573 4336 7.287466 TGGATCTAATGGTTGATTTGGTATTGG 59.713 37.037 0.00 0.00 0.00 3.16
1574 4337 7.505585 GGATCTAATGGTTGATTTGGTATTGGA 59.494 37.037 0.00 0.00 0.00 3.53
1653 4416 9.797556 CTTGGGTCAATATGAATATGCATTATG 57.202 33.333 3.54 2.04 0.00 1.90
1734 4500 4.521130 TTGCTAAATCTCAGTCGACTGT 57.479 40.909 37.21 23.96 44.12 3.55
1742 4508 5.906113 ATCTCAGTCGACTGTGACTTAAT 57.094 39.130 38.36 25.70 46.85 1.40
1746 4512 6.025749 TCAGTCGACTGTGACTTAATCAAT 57.974 37.500 37.21 1.15 46.85 2.57
1804 4570 7.227049 TGGAAACCTGTCCAAAATTATCTTC 57.773 36.000 0.00 0.00 44.91 2.87
1832 4606 7.773864 TTTTTACATCTTACGTCACTTGACA 57.226 32.000 9.94 0.00 44.99 3.58
1833 4607 6.758593 TTTACATCTTACGTCACTTGACAC 57.241 37.500 9.94 0.00 44.99 3.67
1835 4609 4.299155 ACATCTTACGTCACTTGACACAG 58.701 43.478 9.94 2.40 44.99 3.66
1837 4611 4.642445 TCTTACGTCACTTGACACAGAA 57.358 40.909 9.94 0.00 44.99 3.02
1840 4614 5.462068 TCTTACGTCACTTGACACAGAATTG 59.538 40.000 9.94 0.00 44.99 2.32
1852 4626 7.815840 TGACACAGAATTGGTTAAATCTCAA 57.184 32.000 0.00 0.00 0.00 3.02
1885 4659 3.694566 CCTAGCCACACCCTATGAAAAAC 59.305 47.826 0.00 0.00 0.00 2.43
1886 4660 2.159382 AGCCACACCCTATGAAAAACG 58.841 47.619 0.00 0.00 0.00 3.60
1887 4661 2.156098 GCCACACCCTATGAAAAACGA 58.844 47.619 0.00 0.00 0.00 3.85
1893 4668 3.247648 CACCCTATGAAAAACGATAGCCG 59.752 47.826 0.00 0.00 45.44 5.52
1905 4680 2.097954 ACGATAGCCGACACGAATTACA 59.902 45.455 0.00 0.00 41.76 2.41
1911 4686 2.413796 GCCGACACGAATTACATTCACA 59.586 45.455 0.00 0.00 39.22 3.58
1916 4691 6.128769 CCGACACGAATTACATTCACAAAGTA 60.129 38.462 0.00 0.00 39.22 2.24
1921 4696 8.067784 CACGAATTACATTCACAAAGTAACTGT 58.932 33.333 0.00 0.00 39.22 3.55
1929 4704 7.759433 ACATTCACAAAGTAACTGTTTTCAAGG 59.241 33.333 0.00 0.00 0.00 3.61
1960 4742 1.103803 TTGAAGGAGAGGGATCGTCG 58.896 55.000 0.00 0.00 0.00 5.12
1980 4762 1.661112 GTCTGGCATGTCGAAAGTAGC 59.339 52.381 0.00 0.00 0.00 3.58
1990 4772 4.754322 TGTCGAAAGTAGCATGAGCATAA 58.246 39.130 0.00 0.00 45.49 1.90
2057 4840 7.856145 ACATCAGCCTGAACTAGATAAAAAG 57.144 36.000 0.00 0.00 0.00 2.27
2058 4841 6.317391 ACATCAGCCTGAACTAGATAAAAAGC 59.683 38.462 0.00 0.00 0.00 3.51
2060 4843 6.476378 TCAGCCTGAACTAGATAAAAAGCTT 58.524 36.000 0.00 0.00 0.00 3.74
2061 4844 7.620880 TCAGCCTGAACTAGATAAAAAGCTTA 58.379 34.615 0.00 0.00 0.00 3.09
2063 4846 7.011857 CAGCCTGAACTAGATAAAAAGCTTAGG 59.988 40.741 0.00 0.00 0.00 2.69
2064 4847 7.048512 GCCTGAACTAGATAAAAAGCTTAGGA 58.951 38.462 0.00 0.00 0.00 2.94
2065 4848 7.717436 GCCTGAACTAGATAAAAAGCTTAGGAT 59.283 37.037 0.00 0.00 0.00 3.24
2074 4857 8.601546 AGATAAAAAGCTTAGGATAGGATGAGG 58.398 37.037 0.00 0.00 0.00 3.86
2075 4858 6.831664 AAAAAGCTTAGGATAGGATGAGGA 57.168 37.500 0.00 0.00 0.00 3.71
2076 4859 7.399674 AAAAAGCTTAGGATAGGATGAGGAT 57.600 36.000 0.00 0.00 0.00 3.24
2077 4860 6.619329 AAAGCTTAGGATAGGATGAGGATC 57.381 41.667 0.00 0.00 0.00 3.36
2096 4879 9.551734 TGAGGATCACAAATCTTATGATGTTAG 57.448 33.333 0.00 0.00 42.56 2.34
2097 4880 8.388484 AGGATCACAAATCTTATGATGTTAGC 57.612 34.615 0.00 0.00 33.21 3.09
2098 4881 8.216423 AGGATCACAAATCTTATGATGTTAGCT 58.784 33.333 0.00 0.00 33.21 3.32
2099 4882 9.494271 GGATCACAAATCTTATGATGTTAGCTA 57.506 33.333 0.00 0.00 33.21 3.32
2103 4886 9.803130 CACAAATCTTATGATGTTAGCTAATCG 57.197 33.333 9.88 0.00 32.44 3.34
2104 4887 8.993121 ACAAATCTTATGATGTTAGCTAATCGG 58.007 33.333 9.88 0.00 32.44 4.18
2105 4888 8.993121 CAAATCTTATGATGTTAGCTAATCGGT 58.007 33.333 9.88 0.49 32.44 4.69
2106 4889 8.764524 AATCTTATGATGTTAGCTAATCGGTC 57.235 34.615 9.88 6.46 32.44 4.79
2107 4890 7.284919 TCTTATGATGTTAGCTAATCGGTCA 57.715 36.000 9.88 11.48 0.00 4.02
2108 4891 7.722363 TCTTATGATGTTAGCTAATCGGTCAA 58.278 34.615 9.88 0.60 0.00 3.18
2109 4892 8.201464 TCTTATGATGTTAGCTAATCGGTCAAA 58.799 33.333 9.88 7.98 0.00 2.69
2110 4893 8.725405 TTATGATGTTAGCTAATCGGTCAAAA 57.275 30.769 9.88 3.07 0.00 2.44
2111 4894 7.807977 ATGATGTTAGCTAATCGGTCAAAAT 57.192 32.000 9.88 0.00 0.00 1.82
2112 4895 7.624360 TGATGTTAGCTAATCGGTCAAAATT 57.376 32.000 9.88 0.00 0.00 1.82
2113 4896 7.471721 TGATGTTAGCTAATCGGTCAAAATTG 58.528 34.615 9.88 0.00 0.00 2.32
2114 4897 6.811253 TGTTAGCTAATCGGTCAAAATTGT 57.189 33.333 9.88 0.00 0.00 2.71
2115 4898 7.908827 TGTTAGCTAATCGGTCAAAATTGTA 57.091 32.000 9.88 0.00 0.00 2.41
2116 4899 8.325421 TGTTAGCTAATCGGTCAAAATTGTAA 57.675 30.769 9.88 0.00 0.00 2.41
2117 4900 8.447833 TGTTAGCTAATCGGTCAAAATTGTAAG 58.552 33.333 9.88 0.00 0.00 2.34
2118 4901 6.436843 AGCTAATCGGTCAAAATTGTAAGG 57.563 37.500 0.00 0.00 0.00 2.69
2119 4902 5.034797 GCTAATCGGTCAAAATTGTAAGGC 58.965 41.667 0.00 0.00 0.00 4.35
2120 4903 5.392595 GCTAATCGGTCAAAATTGTAAGGCA 60.393 40.000 0.00 0.00 0.00 4.75
2121 4904 4.701956 ATCGGTCAAAATTGTAAGGCAG 57.298 40.909 0.00 0.00 0.00 4.85
2122 4905 3.745799 TCGGTCAAAATTGTAAGGCAGA 58.254 40.909 0.00 0.00 0.00 4.26
2123 4906 3.751175 TCGGTCAAAATTGTAAGGCAGAG 59.249 43.478 0.00 0.00 0.00 3.35
2124 4907 3.751175 CGGTCAAAATTGTAAGGCAGAGA 59.249 43.478 0.00 0.00 0.00 3.10
2125 4908 4.215399 CGGTCAAAATTGTAAGGCAGAGAA 59.785 41.667 0.00 0.00 0.00 2.87
2126 4909 5.617751 CGGTCAAAATTGTAAGGCAGAGAAG 60.618 44.000 0.00 0.00 0.00 2.85
2127 4910 5.157067 GTCAAAATTGTAAGGCAGAGAAGC 58.843 41.667 0.00 0.00 0.00 3.86
2128 4911 5.048434 GTCAAAATTGTAAGGCAGAGAAGCT 60.048 40.000 0.00 0.00 34.17 3.74
2129 4912 6.149474 GTCAAAATTGTAAGGCAGAGAAGCTA 59.851 38.462 0.00 0.00 34.17 3.32
2130 4913 6.372659 TCAAAATTGTAAGGCAGAGAAGCTAG 59.627 38.462 0.00 0.00 34.17 3.42
2131 4914 2.969628 TGTAAGGCAGAGAAGCTAGC 57.030 50.000 6.62 6.62 34.17 3.42
2132 4915 2.461695 TGTAAGGCAGAGAAGCTAGCT 58.538 47.619 12.68 12.68 34.17 3.32
2133 4916 2.167281 TGTAAGGCAGAGAAGCTAGCTG 59.833 50.000 20.16 7.33 34.17 4.24
2135 4918 4.123300 GCAGAGAAGCTAGCTGCC 57.877 61.111 20.16 13.50 46.94 4.85
2136 4919 1.523484 GCAGAGAAGCTAGCTGCCC 60.523 63.158 20.16 7.17 46.94 5.36
2137 4920 1.227205 CAGAGAAGCTAGCTGCCCG 60.227 63.158 20.16 3.40 44.23 6.13
2138 4921 1.380515 AGAGAAGCTAGCTGCCCGA 60.381 57.895 20.16 0.00 44.23 5.14
2139 4922 0.758685 AGAGAAGCTAGCTGCCCGAT 60.759 55.000 20.16 0.00 44.23 4.18
2140 4923 0.962489 GAGAAGCTAGCTGCCCGATA 59.038 55.000 20.16 0.00 44.23 2.92
2141 4924 1.341531 GAGAAGCTAGCTGCCCGATAA 59.658 52.381 20.16 0.00 44.23 1.75
2142 4925 1.762957 AGAAGCTAGCTGCCCGATAAA 59.237 47.619 20.16 0.00 44.23 1.40
2143 4926 2.170607 AGAAGCTAGCTGCCCGATAAAA 59.829 45.455 20.16 0.00 44.23 1.52
2144 4927 1.954927 AGCTAGCTGCCCGATAAAAC 58.045 50.000 18.57 0.00 44.23 2.43
2145 4928 0.945099 GCTAGCTGCCCGATAAAACC 59.055 55.000 7.70 0.00 35.15 3.27
2146 4929 1.745827 GCTAGCTGCCCGATAAAACCA 60.746 52.381 7.70 0.00 35.15 3.67
2147 4930 1.940613 CTAGCTGCCCGATAAAACCAC 59.059 52.381 0.00 0.00 0.00 4.16
2148 4931 0.679960 AGCTGCCCGATAAAACCACC 60.680 55.000 0.00 0.00 0.00 4.61
2149 4932 0.679960 GCTGCCCGATAAAACCACCT 60.680 55.000 0.00 0.00 0.00 4.00
2150 4933 1.094785 CTGCCCGATAAAACCACCTG 58.905 55.000 0.00 0.00 0.00 4.00
2151 4934 0.693622 TGCCCGATAAAACCACCTGA 59.306 50.000 0.00 0.00 0.00 3.86
2152 4935 1.283613 TGCCCGATAAAACCACCTGAT 59.716 47.619 0.00 0.00 0.00 2.90
2153 4936 2.291282 TGCCCGATAAAACCACCTGATT 60.291 45.455 0.00 0.00 0.00 2.57
2154 4937 3.054287 TGCCCGATAAAACCACCTGATTA 60.054 43.478 0.00 0.00 0.00 1.75
2155 4938 3.564225 GCCCGATAAAACCACCTGATTAG 59.436 47.826 0.00 0.00 0.00 1.73
2180 4963 2.606213 TGGATCACCACCTCGCCA 60.606 61.111 0.00 0.00 41.77 5.69
2181 4964 1.995066 TGGATCACCACCTCGCCAT 60.995 57.895 0.00 0.00 41.77 4.40
2182 4965 1.227674 GGATCACCACCTCGCCATC 60.228 63.158 0.00 0.00 35.97 3.51
2183 4966 1.227674 GATCACCACCTCGCCATCC 60.228 63.158 0.00 0.00 0.00 3.51
2184 4967 1.971505 GATCACCACCTCGCCATCCA 61.972 60.000 0.00 0.00 0.00 3.41
2185 4968 1.561769 ATCACCACCTCGCCATCCAA 61.562 55.000 0.00 0.00 0.00 3.53
2186 4969 1.746615 CACCACCTCGCCATCCAAG 60.747 63.158 0.00 0.00 0.00 3.61
2187 4970 1.918293 ACCACCTCGCCATCCAAGA 60.918 57.895 0.00 0.00 0.00 3.02
2188 4971 1.153289 CCACCTCGCCATCCAAGAG 60.153 63.158 0.00 0.00 0.00 2.85
2189 4972 1.817099 CACCTCGCCATCCAAGAGC 60.817 63.158 0.00 0.00 0.00 4.09
2194 4977 3.567797 GCCATCCAAGAGCGACGC 61.568 66.667 13.03 13.03 0.00 5.19
2195 4978 3.257561 CCATCCAAGAGCGACGCG 61.258 66.667 15.18 3.53 0.00 6.01
2196 4979 3.257561 CATCCAAGAGCGACGCGG 61.258 66.667 15.18 9.74 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.889186 GTCATGAAGGTTGTGGCCGT 60.889 55.000 0.00 0.00 0.00 5.68
1 2 1.586154 GGTCATGAAGGTTGTGGCCG 61.586 60.000 0.00 0.00 0.00 6.13
2 3 1.586154 CGGTCATGAAGGTTGTGGCC 61.586 60.000 0.00 0.00 34.33 5.36
3 4 1.875963 CGGTCATGAAGGTTGTGGC 59.124 57.895 0.00 0.00 0.00 5.01
40 2555 0.253630 TGGTCCTGGGCCCTTTCTAT 60.254 55.000 25.70 0.00 0.00 1.98
54 2569 2.035442 GCAGCGGAACTCTTGGTCC 61.035 63.158 0.00 0.00 0.00 4.46
108 2623 2.365105 CCCTTCCTCCCCGTGCTA 60.365 66.667 0.00 0.00 0.00 3.49
127 2642 1.613437 CACCGGAACATTTGCTCCTTT 59.387 47.619 9.46 0.00 0.00 3.11
146 2661 4.612412 GGTTGGTGGTCGGCGTCA 62.612 66.667 6.85 4.01 0.00 4.35
148 2663 4.619227 CTGGTTGGTGGTCGGCGT 62.619 66.667 6.85 0.00 0.00 5.68
160 2675 2.282462 CCGGGCAAAGCTCTGGTT 60.282 61.111 0.00 0.00 0.00 3.67
168 2683 1.597027 AGTTGTCGTCCGGGCAAAG 60.597 57.895 6.96 0.00 0.00 2.77
189 2704 0.391130 TTTCTCCCTCGCCATTGTCG 60.391 55.000 0.00 0.00 0.00 4.35
192 2707 1.379642 GCCTTTCTCCCTCGCCATTG 61.380 60.000 0.00 0.00 0.00 2.82
193 2708 1.077429 GCCTTTCTCCCTCGCCATT 60.077 57.895 0.00 0.00 0.00 3.16
195 2710 4.082523 CGCCTTTCTCCCTCGCCA 62.083 66.667 0.00 0.00 0.00 5.69
329 2846 5.680619 TGTTCACAAATGTTCAGACTAGGT 58.319 37.500 0.00 0.00 0.00 3.08
467 2987 5.790495 GTCATTTGACTTTTAGCTAACAGCG 59.210 40.000 17.63 4.65 43.07 5.18
510 3030 4.452795 GGATCTTATCTTTTTAGCTCGGGC 59.547 45.833 0.00 0.00 39.06 6.13
511 3031 4.686554 CGGATCTTATCTTTTTAGCTCGGG 59.313 45.833 0.00 0.00 0.00 5.14
512 3032 5.529791 TCGGATCTTATCTTTTTAGCTCGG 58.470 41.667 0.00 0.00 0.00 4.63
513 3033 6.400515 GCATCGGATCTTATCTTTTTAGCTCG 60.401 42.308 0.00 0.00 0.00 5.03
514 3034 6.400515 CGCATCGGATCTTATCTTTTTAGCTC 60.401 42.308 0.00 0.00 0.00 4.09
515 3035 5.406780 CGCATCGGATCTTATCTTTTTAGCT 59.593 40.000 0.00 0.00 0.00 3.32
516 3036 5.405571 TCGCATCGGATCTTATCTTTTTAGC 59.594 40.000 0.00 0.00 0.00 3.09
517 3037 7.588143 ATCGCATCGGATCTTATCTTTTTAG 57.412 36.000 0.00 0.00 0.00 1.85
518 3038 7.582435 GATCGCATCGGATCTTATCTTTTTA 57.418 36.000 0.00 0.00 39.75 1.52
519 3039 6.473397 GATCGCATCGGATCTTATCTTTTT 57.527 37.500 0.00 0.00 39.75 1.94
534 3054 1.066914 GGAAGAGCATCGATCGCATC 58.933 55.000 11.09 5.46 42.67 3.91
535 3055 0.390492 TGGAAGAGCATCGATCGCAT 59.610 50.000 11.09 2.08 42.67 4.73
536 3056 0.249197 CTGGAAGAGCATCGATCGCA 60.249 55.000 11.09 0.00 42.67 5.10
537 3057 0.249238 ACTGGAAGAGCATCGATCGC 60.249 55.000 11.09 10.63 42.67 4.58
538 3058 1.066152 TGACTGGAAGAGCATCGATCG 59.934 52.381 9.36 9.36 42.67 3.69
539 3059 2.863137 GTTGACTGGAAGAGCATCGATC 59.137 50.000 0.00 0.00 42.67 3.69
540 3060 2.234661 TGTTGACTGGAAGAGCATCGAT 59.765 45.455 0.00 0.00 42.67 3.59
541 3061 1.618343 TGTTGACTGGAAGAGCATCGA 59.382 47.619 0.00 0.00 42.67 3.59
542 3062 2.084610 TGTTGACTGGAAGAGCATCG 57.915 50.000 0.00 0.00 42.67 3.84
543 3063 3.755378 ACATTGTTGACTGGAAGAGCATC 59.245 43.478 0.00 0.00 37.43 3.91
544 3064 3.759581 ACATTGTTGACTGGAAGAGCAT 58.240 40.909 0.00 0.00 37.43 3.79
545 3065 3.213206 ACATTGTTGACTGGAAGAGCA 57.787 42.857 0.00 0.00 37.43 4.26
546 3066 5.634896 CAATACATTGTTGACTGGAAGAGC 58.365 41.667 0.00 0.00 33.39 4.09
560 3080 4.633126 CACAGGAGACCTCACAATACATTG 59.367 45.833 0.37 0.37 43.26 2.82
561 3081 4.323792 CCACAGGAGACCTCACAATACATT 60.324 45.833 0.00 0.00 0.00 2.71
562 3082 3.198635 CCACAGGAGACCTCACAATACAT 59.801 47.826 0.00 0.00 0.00 2.29
563 3083 2.567169 CCACAGGAGACCTCACAATACA 59.433 50.000 0.00 0.00 0.00 2.29
564 3084 2.832129 TCCACAGGAGACCTCACAATAC 59.168 50.000 0.00 0.00 0.00 1.89
565 3085 3.184382 TCCACAGGAGACCTCACAATA 57.816 47.619 0.00 0.00 0.00 1.90
566 3086 2.030027 TCCACAGGAGACCTCACAAT 57.970 50.000 0.00 0.00 0.00 2.71
567 3087 2.030027 ATCCACAGGAGACCTCACAA 57.970 50.000 0.00 0.00 34.05 3.33
568 3088 2.919772 TATCCACAGGAGACCTCACA 57.080 50.000 0.00 0.00 34.05 3.58
569 3089 5.141182 TCTTATATCCACAGGAGACCTCAC 58.859 45.833 0.00 0.00 34.05 3.51
570 3090 5.403558 TCTTATATCCACAGGAGACCTCA 57.596 43.478 0.00 0.00 34.05 3.86
571 3091 6.268847 ACATTCTTATATCCACAGGAGACCTC 59.731 42.308 0.00 0.00 34.05 3.85
572 3092 6.146760 ACATTCTTATATCCACAGGAGACCT 58.853 40.000 0.00 0.00 34.05 3.85
573 3093 6.426646 ACATTCTTATATCCACAGGAGACC 57.573 41.667 0.00 0.00 34.05 3.85
574 3094 7.595502 CGTTACATTCTTATATCCACAGGAGAC 59.404 40.741 0.00 0.00 34.05 3.36
575 3095 7.287005 ACGTTACATTCTTATATCCACAGGAGA 59.713 37.037 0.00 0.00 34.05 3.71
576 3096 7.434492 ACGTTACATTCTTATATCCACAGGAG 58.566 38.462 0.00 0.00 34.05 3.69
577 3097 7.356089 ACGTTACATTCTTATATCCACAGGA 57.644 36.000 0.00 0.00 35.55 3.86
578 3098 9.193133 CTTACGTTACATTCTTATATCCACAGG 57.807 37.037 0.00 0.00 0.00 4.00
579 3099 9.745880 ACTTACGTTACATTCTTATATCCACAG 57.254 33.333 0.00 0.00 0.00 3.66
580 3100 9.740239 GACTTACGTTACATTCTTATATCCACA 57.260 33.333 0.00 0.00 0.00 4.17
581 3101 9.740239 TGACTTACGTTACATTCTTATATCCAC 57.260 33.333 0.00 0.00 0.00 4.02
608 3128 3.600388 TGAATTTTGCACCACGGTTTTT 58.400 36.364 0.00 0.00 0.00 1.94
609 3129 3.252974 TGAATTTTGCACCACGGTTTT 57.747 38.095 0.00 0.00 0.00 2.43
610 3130 2.969628 TGAATTTTGCACCACGGTTT 57.030 40.000 0.00 0.00 0.00 3.27
611 3131 2.933260 GTTTGAATTTTGCACCACGGTT 59.067 40.909 0.00 0.00 0.00 4.44
612 3132 2.167487 AGTTTGAATTTTGCACCACGGT 59.833 40.909 0.00 0.00 0.00 4.83
613 3133 2.820330 AGTTTGAATTTTGCACCACGG 58.180 42.857 0.00 0.00 0.00 4.94
614 3134 4.206200 GTGTAGTTTGAATTTTGCACCACG 59.794 41.667 0.00 0.00 0.00 4.94
615 3135 5.348164 AGTGTAGTTTGAATTTTGCACCAC 58.652 37.500 0.00 0.00 0.00 4.16
616 3136 5.590530 AGTGTAGTTTGAATTTTGCACCA 57.409 34.783 0.00 0.00 0.00 4.17
617 3137 6.500041 TGTAGTGTAGTTTGAATTTTGCACC 58.500 36.000 0.00 0.00 0.00 5.01
618 3138 7.114811 CCATGTAGTGTAGTTTGAATTTTGCAC 59.885 37.037 0.00 0.00 0.00 4.57
619 3139 7.013750 TCCATGTAGTGTAGTTTGAATTTTGCA 59.986 33.333 0.00 0.00 0.00 4.08
620 3140 7.367285 TCCATGTAGTGTAGTTTGAATTTTGC 58.633 34.615 0.00 0.00 0.00 3.68
621 3141 7.538678 GCTCCATGTAGTGTAGTTTGAATTTTG 59.461 37.037 0.00 0.00 0.00 2.44
622 3142 7.448469 AGCTCCATGTAGTGTAGTTTGAATTTT 59.552 33.333 0.00 0.00 0.00 1.82
623 3143 6.942576 AGCTCCATGTAGTGTAGTTTGAATTT 59.057 34.615 0.00 0.00 0.00 1.82
624 3144 6.476378 AGCTCCATGTAGTGTAGTTTGAATT 58.524 36.000 0.00 0.00 0.00 2.17
625 3145 6.054860 AGCTCCATGTAGTGTAGTTTGAAT 57.945 37.500 0.00 0.00 0.00 2.57
626 3146 5.483685 AGCTCCATGTAGTGTAGTTTGAA 57.516 39.130 0.00 0.00 0.00 2.69
627 3147 5.011635 TGAAGCTCCATGTAGTGTAGTTTGA 59.988 40.000 0.00 0.00 0.00 2.69
628 3148 5.237815 TGAAGCTCCATGTAGTGTAGTTTG 58.762 41.667 0.00 0.00 0.00 2.93
629 3149 5.483685 TGAAGCTCCATGTAGTGTAGTTT 57.516 39.130 0.00 0.00 0.00 2.66
630 3150 5.683876 ATGAAGCTCCATGTAGTGTAGTT 57.316 39.130 0.00 0.00 0.00 2.24
631 3151 5.187772 TGAATGAAGCTCCATGTAGTGTAGT 59.812 40.000 0.00 0.00 0.00 2.73
632 3152 5.664457 TGAATGAAGCTCCATGTAGTGTAG 58.336 41.667 0.00 0.00 0.00 2.74
633 3153 5.675684 TGAATGAAGCTCCATGTAGTGTA 57.324 39.130 0.00 0.00 0.00 2.90
634 3154 4.558226 TGAATGAAGCTCCATGTAGTGT 57.442 40.909 0.00 0.00 0.00 3.55
635 3155 7.558161 TTAATGAATGAAGCTCCATGTAGTG 57.442 36.000 0.00 0.00 0.00 2.74
636 3156 7.994911 TGATTAATGAATGAAGCTCCATGTAGT 59.005 33.333 0.00 0.00 0.00 2.73
637 3157 8.387190 TGATTAATGAATGAAGCTCCATGTAG 57.613 34.615 0.00 0.00 0.00 2.74
638 3158 8.623903 GTTGATTAATGAATGAAGCTCCATGTA 58.376 33.333 0.00 0.00 0.00 2.29
639 3159 7.341256 AGTTGATTAATGAATGAAGCTCCATGT 59.659 33.333 0.00 0.00 0.00 3.21
640 3160 7.713750 AGTTGATTAATGAATGAAGCTCCATG 58.286 34.615 0.00 0.00 0.00 3.66
641 3161 7.893124 AGTTGATTAATGAATGAAGCTCCAT 57.107 32.000 0.00 0.00 0.00 3.41
642 3162 8.049117 AGTAGTTGATTAATGAATGAAGCTCCA 58.951 33.333 0.00 0.00 0.00 3.86
643 3163 8.443953 AGTAGTTGATTAATGAATGAAGCTCC 57.556 34.615 0.00 0.00 0.00 4.70
672 3192 9.924010 CCAGGCTATCTATAGGTTATAAGTAGT 57.076 37.037 0.00 0.00 0.00 2.73
673 3193 9.357161 CCCAGGCTATCTATAGGTTATAAGTAG 57.643 40.741 0.00 0.00 0.00 2.57
674 3194 8.853912 ACCCAGGCTATCTATAGGTTATAAGTA 58.146 37.037 0.00 0.00 0.00 2.24
675 3195 7.720412 ACCCAGGCTATCTATAGGTTATAAGT 58.280 38.462 0.00 0.00 0.00 2.24
676 3196 8.611051 AACCCAGGCTATCTATAGGTTATAAG 57.389 38.462 0.00 0.00 33.45 1.73
677 3197 8.181524 TGAACCCAGGCTATCTATAGGTTATAA 58.818 37.037 0.00 0.00 34.59 0.98
678 3198 7.715482 TGAACCCAGGCTATCTATAGGTTATA 58.285 38.462 0.00 0.00 34.59 0.98
679 3199 6.571624 TGAACCCAGGCTATCTATAGGTTAT 58.428 40.000 0.00 0.00 34.59 1.89
680 3200 5.972698 TGAACCCAGGCTATCTATAGGTTA 58.027 41.667 0.00 0.00 34.59 2.85
681 3201 4.827789 TGAACCCAGGCTATCTATAGGTT 58.172 43.478 0.00 0.00 36.11 3.50
682 3202 4.487282 TGAACCCAGGCTATCTATAGGT 57.513 45.455 0.00 0.00 0.00 3.08
683 3203 4.223923 CCTTGAACCCAGGCTATCTATAGG 59.776 50.000 0.00 0.00 0.00 2.57
684 3204 5.087323 TCCTTGAACCCAGGCTATCTATAG 58.913 45.833 0.00 0.00 0.00 1.31
685 3205 5.087923 TCCTTGAACCCAGGCTATCTATA 57.912 43.478 0.00 0.00 0.00 1.31
686 3206 3.941629 TCCTTGAACCCAGGCTATCTAT 58.058 45.455 0.00 0.00 0.00 1.98
687 3207 3.414759 TCCTTGAACCCAGGCTATCTA 57.585 47.619 0.00 0.00 0.00 1.98
688 3208 2.270434 TCCTTGAACCCAGGCTATCT 57.730 50.000 0.00 0.00 0.00 1.98
689 3209 3.017442 GTTTCCTTGAACCCAGGCTATC 58.983 50.000 0.00 0.00 0.00 2.08
690 3210 2.378547 TGTTTCCTTGAACCCAGGCTAT 59.621 45.455 0.00 0.00 0.00 2.97
691 3211 1.777878 TGTTTCCTTGAACCCAGGCTA 59.222 47.619 0.00 0.00 0.00 3.93
705 3225 4.809426 TCTTTGACGTTCTCTTCTGTTTCC 59.191 41.667 0.00 0.00 0.00 3.13
710 3230 5.292101 ACAACTTCTTTGACGTTCTCTTCTG 59.708 40.000 0.00 0.00 38.73 3.02
731 3251 6.443934 TTTGACTTTTAGCTAACAGCACAA 57.556 33.333 17.63 18.76 45.56 3.33
764 3284 0.606604 GGTGTTAGCTCGAGGTCCAA 59.393 55.000 22.33 8.17 0.00 3.53
825 3415 3.840666 TGCTTATCTTGAGTGGAGACCTT 59.159 43.478 0.00 0.00 0.00 3.50
830 3420 5.233050 CGTTACATGCTTATCTTGAGTGGAG 59.767 44.000 0.00 0.00 0.00 3.86
838 3428 6.163476 TGACTTCACGTTACATGCTTATCTT 58.837 36.000 0.00 0.00 0.00 2.40
915 3507 6.210078 GGACGCTATTTATAGGCTATAGCAG 58.790 44.000 25.53 12.70 44.33 4.24
916 3508 5.068723 GGGACGCTATTTATAGGCTATAGCA 59.931 44.000 25.53 7.15 44.33 3.49
917 3509 5.509332 GGGGACGCTATTTATAGGCTATAGC 60.509 48.000 16.78 16.78 41.97 2.97
918 3510 6.086785 GGGGACGCTATTTATAGGCTATAG 57.913 45.833 13.60 6.07 0.00 1.31
948 3544 2.942804 TGCTTTTGGGTTGATCAGACA 58.057 42.857 0.00 0.00 0.00 3.41
965 3575 1.484065 GGAGAGGAGATGGGGTATGCT 60.484 57.143 0.00 0.00 0.00 3.79
966 3576 0.980423 GGAGAGGAGATGGGGTATGC 59.020 60.000 0.00 0.00 0.00 3.14
967 3577 2.111613 AGAGGAGAGGAGATGGGGTATG 59.888 54.545 0.00 0.00 0.00 2.39
968 3578 2.381961 GAGAGGAGAGGAGATGGGGTAT 59.618 54.545 0.00 0.00 0.00 2.73
969 3579 1.783979 GAGAGGAGAGGAGATGGGGTA 59.216 57.143 0.00 0.00 0.00 3.69
970 3580 0.560688 GAGAGGAGAGGAGATGGGGT 59.439 60.000 0.00 0.00 0.00 4.95
971 3581 0.178935 GGAGAGGAGAGGAGATGGGG 60.179 65.000 0.00 0.00 0.00 4.96
972 3582 0.178935 GGGAGAGGAGAGGAGATGGG 60.179 65.000 0.00 0.00 0.00 4.00
991 3605 1.072015 GGGAGAAGCCATGAGATGAGG 59.928 57.143 0.00 0.00 38.95 3.86
1162 3776 4.602259 CGGGGTCGTGCACACAGT 62.602 66.667 18.64 0.00 0.00 3.55
1342 4086 3.748048 AGCACAGACACACACAATACATC 59.252 43.478 0.00 0.00 0.00 3.06
1454 4208 7.755591 TGCTCTGAAATTTGACTATGATGAAC 58.244 34.615 0.00 0.00 0.00 3.18
1543 4306 6.097270 ACCAAATCAACCATTAGATCCACATG 59.903 38.462 0.00 0.00 0.00 3.21
1585 4348 5.659079 TGACCTTTGACCAAGTTTACCAAAT 59.341 36.000 0.00 0.00 0.00 2.32
1589 4352 5.126545 AGTTTGACCTTTGACCAAGTTTACC 59.873 40.000 0.00 0.00 0.00 2.85
1691 4457 6.756542 GCAATCCCGTTTTTCATAAAAGCTAT 59.243 34.615 0.00 0.00 34.08 2.97
1696 4462 9.145865 GATTTAGCAATCCCGTTTTTCATAAAA 57.854 29.630 0.00 0.00 33.74 1.52
1734 4500 8.253810 AGAATCGACTGAGAATTGATTAAGTCA 58.746 33.333 0.37 0.00 34.97 3.41
1742 4508 8.300286 GTGGATATAGAATCGACTGAGAATTGA 58.700 37.037 0.00 0.00 0.00 2.57
1746 4512 5.181433 CCGTGGATATAGAATCGACTGAGAA 59.819 44.000 0.00 0.00 0.00 2.87
1832 4606 7.607991 AGTCGATTGAGATTTAACCAATTCTGT 59.392 33.333 0.00 0.00 31.40 3.41
1833 4607 7.978982 AGTCGATTGAGATTTAACCAATTCTG 58.021 34.615 0.00 0.00 31.40 3.02
1835 4609 9.922305 CTTAGTCGATTGAGATTTAACCAATTC 57.078 33.333 0.00 0.00 31.40 2.17
1837 4611 9.099454 GTCTTAGTCGATTGAGATTTAACCAAT 57.901 33.333 5.71 0.00 33.66 3.16
1840 4614 7.266400 AGGTCTTAGTCGATTGAGATTTAACC 58.734 38.462 5.71 3.11 0.00 2.85
1852 4626 2.688958 GTGTGGCTAGGTCTTAGTCGAT 59.311 50.000 0.00 0.00 36.76 3.59
1885 4659 2.723209 TGTAATTCGTGTCGGCTATCG 58.277 47.619 0.00 0.00 40.90 2.92
1886 4660 5.251999 GAATGTAATTCGTGTCGGCTATC 57.748 43.478 0.00 0.00 44.37 2.08
1905 4680 7.123547 TCCCTTGAAAACAGTTACTTTGTGAAT 59.876 33.333 0.00 0.00 0.00 2.57
1911 4686 5.126545 GGTGTCCCTTGAAAACAGTTACTTT 59.873 40.000 0.00 0.00 0.00 2.66
1916 4691 3.094484 TGGTGTCCCTTGAAAACAGTT 57.906 42.857 0.00 0.00 0.00 3.16
1921 4696 3.640967 CAAAGGATGGTGTCCCTTGAAAA 59.359 43.478 0.00 0.00 46.98 2.29
1960 4742 1.661112 GCTACTTTCGACATGCCAGAC 59.339 52.381 0.00 0.00 0.00 3.51
1980 4762 6.146184 CGTACCCAGACTTTATTATGCTCATG 59.854 42.308 0.00 0.00 0.00 3.07
2012 4794 1.305549 GGACACCCTTAGGTCCCGA 60.306 63.158 0.00 0.00 46.45 5.14
2027 4809 1.079503 GTTCAGGCTGATGTTCGGAC 58.920 55.000 19.50 7.78 0.00 4.79
2057 4840 4.774726 TGTGATCCTCATCCTATCCTAAGC 59.225 45.833 0.00 0.00 0.00 3.09
2058 4841 6.924913 TTGTGATCCTCATCCTATCCTAAG 57.075 41.667 0.00 0.00 0.00 2.18
2060 4843 7.251936 AGATTTGTGATCCTCATCCTATCCTA 58.748 38.462 0.00 0.00 0.00 2.94
2061 4844 6.090186 AGATTTGTGATCCTCATCCTATCCT 58.910 40.000 0.00 0.00 0.00 3.24
2063 4846 9.381033 CATAAGATTTGTGATCCTCATCCTATC 57.619 37.037 0.00 0.00 0.00 2.08
2064 4847 9.109246 TCATAAGATTTGTGATCCTCATCCTAT 57.891 33.333 0.00 0.00 0.00 2.57
2065 4848 8.496534 TCATAAGATTTGTGATCCTCATCCTA 57.503 34.615 0.00 0.00 0.00 2.94
2066 4849 7.384524 TCATAAGATTTGTGATCCTCATCCT 57.615 36.000 0.00 0.00 0.00 3.24
2067 4850 7.664731 ACATCATAAGATTTGTGATCCTCATCC 59.335 37.037 0.00 0.00 39.14 3.51
2068 4851 8.618702 ACATCATAAGATTTGTGATCCTCATC 57.381 34.615 0.00 0.00 39.14 2.92
2069 4852 8.991783 AACATCATAAGATTTGTGATCCTCAT 57.008 30.769 0.00 0.00 39.14 2.90
2070 4853 9.551734 CTAACATCATAAGATTTGTGATCCTCA 57.448 33.333 0.00 0.00 39.14 3.86
2071 4854 8.502387 GCTAACATCATAAGATTTGTGATCCTC 58.498 37.037 0.00 0.00 39.14 3.71
2072 4855 8.216423 AGCTAACATCATAAGATTTGTGATCCT 58.784 33.333 0.00 0.00 39.14 3.24
2073 4856 8.388484 AGCTAACATCATAAGATTTGTGATCC 57.612 34.615 0.00 0.00 39.14 3.36
2077 4860 9.803130 CGATTAGCTAACATCATAAGATTTGTG 57.197 33.333 8.70 0.00 30.20 3.33
2078 4861 8.993121 CCGATTAGCTAACATCATAAGATTTGT 58.007 33.333 8.70 0.00 30.20 2.83
2079 4862 8.993121 ACCGATTAGCTAACATCATAAGATTTG 58.007 33.333 8.70 0.00 30.20 2.32
2080 4863 9.209175 GACCGATTAGCTAACATCATAAGATTT 57.791 33.333 8.70 0.00 30.20 2.17
2081 4864 8.367911 TGACCGATTAGCTAACATCATAAGATT 58.632 33.333 8.70 0.00 30.20 2.40
2082 4865 7.896811 TGACCGATTAGCTAACATCATAAGAT 58.103 34.615 8.70 0.00 33.87 2.40
2083 4866 7.284919 TGACCGATTAGCTAACATCATAAGA 57.715 36.000 8.70 0.00 0.00 2.10
2084 4867 7.946655 TTGACCGATTAGCTAACATCATAAG 57.053 36.000 8.70 0.00 0.00 1.73
2085 4868 8.725405 TTTTGACCGATTAGCTAACATCATAA 57.275 30.769 8.70 8.60 0.00 1.90
2086 4869 8.902540 ATTTTGACCGATTAGCTAACATCATA 57.097 30.769 8.70 3.27 0.00 2.15
2087 4870 7.807977 ATTTTGACCGATTAGCTAACATCAT 57.192 32.000 8.70 0.00 0.00 2.45
2088 4871 7.120579 ACAATTTTGACCGATTAGCTAACATCA 59.879 33.333 8.70 7.43 0.00 3.07
2089 4872 7.472543 ACAATTTTGACCGATTAGCTAACATC 58.527 34.615 8.70 2.53 0.00 3.06
2090 4873 7.391148 ACAATTTTGACCGATTAGCTAACAT 57.609 32.000 8.70 0.00 0.00 2.71
2091 4874 6.811253 ACAATTTTGACCGATTAGCTAACA 57.189 33.333 8.70 0.00 0.00 2.41
2092 4875 7.908601 CCTTACAATTTTGACCGATTAGCTAAC 59.091 37.037 8.70 2.31 0.00 2.34
2093 4876 7.414762 GCCTTACAATTTTGACCGATTAGCTAA 60.415 37.037 8.99 8.99 0.00 3.09
2094 4877 6.037830 GCCTTACAATTTTGACCGATTAGCTA 59.962 38.462 0.00 0.00 0.00 3.32
2095 4878 5.163652 GCCTTACAATTTTGACCGATTAGCT 60.164 40.000 0.00 0.00 0.00 3.32
2096 4879 5.034797 GCCTTACAATTTTGACCGATTAGC 58.965 41.667 0.00 0.00 0.00 3.09
2097 4880 6.093495 TCTGCCTTACAATTTTGACCGATTAG 59.907 38.462 0.00 0.00 0.00 1.73
2098 4881 5.941058 TCTGCCTTACAATTTTGACCGATTA 59.059 36.000 0.00 0.00 0.00 1.75
2099 4882 4.764823 TCTGCCTTACAATTTTGACCGATT 59.235 37.500 0.00 0.00 0.00 3.34
2100 4883 4.331968 TCTGCCTTACAATTTTGACCGAT 58.668 39.130 0.00 0.00 0.00 4.18
2101 4884 3.745799 TCTGCCTTACAATTTTGACCGA 58.254 40.909 0.00 0.00 0.00 4.69
2102 4885 3.751175 TCTCTGCCTTACAATTTTGACCG 59.249 43.478 0.00 0.00 0.00 4.79
2103 4886 5.703876 CTTCTCTGCCTTACAATTTTGACC 58.296 41.667 0.00 0.00 0.00 4.02
2104 4887 5.048434 AGCTTCTCTGCCTTACAATTTTGAC 60.048 40.000 0.00 0.00 0.00 3.18
2105 4888 5.072741 AGCTTCTCTGCCTTACAATTTTGA 58.927 37.500 0.00 0.00 0.00 2.69
2106 4889 5.382618 AGCTTCTCTGCCTTACAATTTTG 57.617 39.130 0.00 0.00 0.00 2.44
2107 4890 5.124617 GCTAGCTTCTCTGCCTTACAATTTT 59.875 40.000 7.70 0.00 0.00 1.82
2108 4891 4.637977 GCTAGCTTCTCTGCCTTACAATTT 59.362 41.667 7.70 0.00 0.00 1.82
2109 4892 4.080638 AGCTAGCTTCTCTGCCTTACAATT 60.081 41.667 12.68 0.00 0.00 2.32
2110 4893 3.454082 AGCTAGCTTCTCTGCCTTACAAT 59.546 43.478 12.68 0.00 0.00 2.71
2111 4894 2.834549 AGCTAGCTTCTCTGCCTTACAA 59.165 45.455 12.68 0.00 0.00 2.41
2112 4895 2.167281 CAGCTAGCTTCTCTGCCTTACA 59.833 50.000 16.46 0.00 0.00 2.41
2113 4896 2.820330 CAGCTAGCTTCTCTGCCTTAC 58.180 52.381 16.46 0.00 0.00 2.34
2114 4897 1.137872 GCAGCTAGCTTCTCTGCCTTA 59.862 52.381 16.46 0.00 45.34 2.69
2115 4898 0.107752 GCAGCTAGCTTCTCTGCCTT 60.108 55.000 16.46 0.00 45.34 4.35
2116 4899 1.521616 GCAGCTAGCTTCTCTGCCT 59.478 57.895 16.46 0.00 45.34 4.75
2117 4900 4.123300 GCAGCTAGCTTCTCTGCC 57.877 61.111 16.46 0.00 45.34 4.85
2119 4902 1.227205 CGGGCAGCTAGCTTCTCTG 60.227 63.158 16.46 8.73 44.79 3.35
2120 4903 0.758685 ATCGGGCAGCTAGCTTCTCT 60.759 55.000 16.46 0.00 44.79 3.10
2121 4904 0.962489 TATCGGGCAGCTAGCTTCTC 59.038 55.000 16.46 9.84 44.79 2.87
2122 4905 1.414158 TTATCGGGCAGCTAGCTTCT 58.586 50.000 16.46 0.00 44.79 2.85
2123 4906 2.240493 TTTATCGGGCAGCTAGCTTC 57.760 50.000 16.46 10.80 44.79 3.86
2124 4907 2.289565 GTTTTATCGGGCAGCTAGCTT 58.710 47.619 16.46 1.38 44.79 3.74
2125 4908 1.475213 GGTTTTATCGGGCAGCTAGCT 60.475 52.381 12.68 12.68 44.79 3.32
2126 4909 0.945099 GGTTTTATCGGGCAGCTAGC 59.055 55.000 6.62 6.62 44.65 3.42
2127 4910 1.940613 GTGGTTTTATCGGGCAGCTAG 59.059 52.381 0.00 0.00 0.00 3.42
2128 4911 1.407712 GGTGGTTTTATCGGGCAGCTA 60.408 52.381 0.00 0.00 0.00 3.32
2129 4912 0.679960 GGTGGTTTTATCGGGCAGCT 60.680 55.000 0.00 0.00 0.00 4.24
2130 4913 0.679960 AGGTGGTTTTATCGGGCAGC 60.680 55.000 0.00 0.00 0.00 5.25
2131 4914 1.094785 CAGGTGGTTTTATCGGGCAG 58.905 55.000 0.00 0.00 0.00 4.85
2132 4915 0.693622 TCAGGTGGTTTTATCGGGCA 59.306 50.000 0.00 0.00 0.00 5.36
2133 4916 2.052782 ATCAGGTGGTTTTATCGGGC 57.947 50.000 0.00 0.00 0.00 6.13
2134 4917 4.134563 CCTAATCAGGTGGTTTTATCGGG 58.865 47.826 0.00 0.00 37.15 5.14
2135 4918 5.031066 TCCTAATCAGGTGGTTTTATCGG 57.969 43.478 0.00 0.00 43.18 4.18
2136 4919 6.995511 TTTCCTAATCAGGTGGTTTTATCG 57.004 37.500 0.00 0.00 43.18 2.92
2139 4922 9.196139 CCATATTTTCCTAATCAGGTGGTTTTA 57.804 33.333 0.00 0.00 43.18 1.52
2140 4923 7.898636 TCCATATTTTCCTAATCAGGTGGTTTT 59.101 33.333 0.00 0.00 43.18 2.43
2141 4924 7.418378 TCCATATTTTCCTAATCAGGTGGTTT 58.582 34.615 0.00 0.00 43.18 3.27
2142 4925 6.980577 TCCATATTTTCCTAATCAGGTGGTT 58.019 36.000 0.00 0.00 43.18 3.67
2143 4926 6.590656 TCCATATTTTCCTAATCAGGTGGT 57.409 37.500 0.00 0.00 43.18 4.16
2144 4927 7.175641 GTGATCCATATTTTCCTAATCAGGTGG 59.824 40.741 0.00 0.00 43.18 4.61
2145 4928 7.175641 GGTGATCCATATTTTCCTAATCAGGTG 59.824 40.741 0.00 0.00 43.18 4.00
2146 4929 7.147141 TGGTGATCCATATTTTCCTAATCAGGT 60.147 37.037 0.00 0.00 39.87 4.00
2147 4930 7.175641 GTGGTGATCCATATTTTCCTAATCAGG 59.824 40.741 0.00 0.00 46.20 3.86
2148 4931 7.175641 GGTGGTGATCCATATTTTCCTAATCAG 59.824 40.741 0.00 0.00 46.20 2.90
2149 4932 7.004086 GGTGGTGATCCATATTTTCCTAATCA 58.996 38.462 0.00 0.00 46.20 2.57
2150 4933 7.234355 AGGTGGTGATCCATATTTTCCTAATC 58.766 38.462 0.00 0.00 46.20 1.75
2151 4934 7.166758 AGGTGGTGATCCATATTTTCCTAAT 57.833 36.000 0.00 0.00 46.20 1.73
2152 4935 6.590656 AGGTGGTGATCCATATTTTCCTAA 57.409 37.500 0.00 0.00 46.20 2.69
2153 4936 5.221641 CGAGGTGGTGATCCATATTTTCCTA 60.222 44.000 0.00 0.00 46.20 2.94
2154 4937 4.444876 CGAGGTGGTGATCCATATTTTCCT 60.445 45.833 0.00 0.00 46.20 3.36
2155 4938 3.815401 CGAGGTGGTGATCCATATTTTCC 59.185 47.826 0.00 0.00 46.20 3.13
2156 4939 3.251004 GCGAGGTGGTGATCCATATTTTC 59.749 47.826 0.00 0.00 46.20 2.29
2157 4940 3.214328 GCGAGGTGGTGATCCATATTTT 58.786 45.455 0.00 0.00 46.20 1.82
2158 4941 2.487265 GGCGAGGTGGTGATCCATATTT 60.487 50.000 0.00 0.00 46.20 1.40
2159 4942 1.072331 GGCGAGGTGGTGATCCATATT 59.928 52.381 0.00 0.00 46.20 1.28
2160 4943 0.687354 GGCGAGGTGGTGATCCATAT 59.313 55.000 0.00 0.00 46.20 1.78
2161 4944 0.689412 TGGCGAGGTGGTGATCCATA 60.689 55.000 0.00 0.00 46.20 2.74
2162 4945 1.348008 ATGGCGAGGTGGTGATCCAT 61.348 55.000 0.00 0.00 46.20 3.41
2163 4946 1.971505 GATGGCGAGGTGGTGATCCA 61.972 60.000 0.00 0.00 42.05 3.41
2164 4947 1.227674 GATGGCGAGGTGGTGATCC 60.228 63.158 0.00 0.00 0.00 3.36
2165 4948 1.227674 GGATGGCGAGGTGGTGATC 60.228 63.158 0.00 0.00 0.00 2.92
2166 4949 1.561769 TTGGATGGCGAGGTGGTGAT 61.562 55.000 0.00 0.00 0.00 3.06
2167 4950 2.184020 CTTGGATGGCGAGGTGGTGA 62.184 60.000 0.00 0.00 0.00 4.02
2168 4951 1.746615 CTTGGATGGCGAGGTGGTG 60.747 63.158 0.00 0.00 0.00 4.17
2169 4952 1.903877 CTCTTGGATGGCGAGGTGGT 61.904 60.000 0.00 0.00 0.00 4.16
2170 4953 1.153289 CTCTTGGATGGCGAGGTGG 60.153 63.158 0.00 0.00 0.00 4.61
2171 4954 1.817099 GCTCTTGGATGGCGAGGTG 60.817 63.158 0.00 0.00 0.00 4.00
2172 4955 2.586792 GCTCTTGGATGGCGAGGT 59.413 61.111 0.00 0.00 0.00 3.85
2177 4960 3.567797 GCGTCGCTCTTGGATGGC 61.568 66.667 10.68 0.00 0.00 4.40
2178 4961 3.257561 CGCGTCGCTCTTGGATGG 61.258 66.667 16.36 0.00 0.00 3.51
2179 4962 3.257561 CCGCGTCGCTCTTGGATG 61.258 66.667 16.36 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.