Multiple sequence alignment - TraesCS7D01G009700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G009700 chr7D 100.000 8209 0 0 1 8209 4655670 4647462 0.000000e+00 15160.0
1 TraesCS7D01G009700 chr7D 95.796 904 28 4 4015 4917 608272457 608271563 0.000000e+00 1450.0
2 TraesCS7D01G009700 chr7D 92.428 898 39 12 1576 2453 154642920 154643808 0.000000e+00 1254.0
3 TraesCS7D01G009700 chr7D 88.253 979 88 17 4016 4981 18937564 18936600 0.000000e+00 1146.0
4 TraesCS7D01G009700 chr7D 100.000 389 0 0 8673 9061 4646998 4646610 0.000000e+00 719.0
5 TraesCS7D01G009700 chr7D 81.063 903 158 10 2804 3696 4517740 4516841 0.000000e+00 708.0
6 TraesCS7D01G009700 chr7D 92.812 473 31 3 4035 4507 162673703 162673234 0.000000e+00 682.0
7 TraesCS7D01G009700 chr7D 75.622 804 175 12 2837 3634 29404946 29404158 6.640000e-101 379.0
8 TraesCS7D01G009700 chr7D 74.970 843 185 15 2837 3672 4425709 4424886 1.860000e-96 364.0
9 TraesCS7D01G009700 chr7D 77.537 601 124 7 7361 7960 29403461 29402871 1.450000e-92 351.0
10 TraesCS7D01G009700 chr7D 98.889 180 1 1 6473 6651 489125468 489125289 4.080000e-83 320.0
11 TraesCS7D01G009700 chr7D 98.324 179 3 0 6473 6651 4651656 4651478 1.900000e-81 315.0
12 TraesCS7D01G009700 chr7D 97.765 179 3 1 6473 6651 608272457 608272280 3.180000e-79 307.0
13 TraesCS7D01G009700 chr7D 75.216 347 61 15 1029 1370 4518837 4518511 3.410000e-29 141.0
14 TraesCS7D01G009700 chr7D 89.423 104 11 0 1267 1370 4291838 4291735 2.050000e-26 132.0
15 TraesCS7D01G009700 chr6D 93.328 2653 140 26 4013 6653 49841291 49838664 0.000000e+00 3884.0
16 TraesCS7D01G009700 chr6D 87.848 897 47 19 1576 2448 71121754 71122612 0.000000e+00 996.0
17 TraesCS7D01G009700 chr2D 90.328 2595 210 34 4015 6589 189373984 189371411 0.000000e+00 3363.0
18 TraesCS7D01G009700 chr2D 89.688 2182 189 32 4391 6557 382184314 382182154 0.000000e+00 2750.0
19 TraesCS7D01G009700 chr2D 98.889 180 1 1 6473 6651 326291474 326291295 4.080000e-83 320.0
20 TraesCS7D01G009700 chr2D 98.883 179 2 0 6473 6651 632331935 632332113 4.080000e-83 320.0
21 TraesCS7D01G009700 chr6B 88.446 2657 278 23 4008 6651 10379434 10382074 0.000000e+00 3179.0
22 TraesCS7D01G009700 chr6B 89.134 2218 213 21 4348 6554 610075507 610073307 0.000000e+00 2736.0
23 TraesCS7D01G009700 chr6B 86.591 619 29 15 1785 2374 145885298 145885891 1.280000e-177 634.0
24 TraesCS7D01G009700 chr6B 85.612 139 12 3 1576 1708 145885129 145885265 1.230000e-28 139.0
25 TraesCS7D01G009700 chr6B 94.444 90 4 1 2286 2374 145885904 145885993 4.410000e-28 137.0
26 TraesCS7D01G009700 chr1D 90.156 2184 175 30 4363 6529 418311837 418309677 0.000000e+00 2806.0
27 TraesCS7D01G009700 chr3D 89.279 2248 202 36 4326 6556 12218472 12216247 0.000000e+00 2780.0
28 TraesCS7D01G009700 chr3D 88.528 2249 227 28 4313 6545 600090188 600087955 0.000000e+00 2695.0
29 TraesCS7D01G009700 chr3D 82.121 330 54 5 1882 2208 436251761 436252088 2.490000e-70 278.0
30 TraesCS7D01G009700 chr3B 88.124 2265 238 28 4306 6556 210603710 210601463 0.000000e+00 2663.0
31 TraesCS7D01G009700 chr4A 93.616 1582 58 11 6652 8207 738963098 738964662 0.000000e+00 2322.0
32 TraesCS7D01G009700 chr4A 92.939 1572 99 10 2456 4019 738961539 738963106 0.000000e+00 2278.0
33 TraesCS7D01G009700 chr4A 80.861 883 161 7 2821 3696 739066044 739066925 0.000000e+00 688.0
34 TraesCS7D01G009700 chr4A 95.467 375 16 1 8687 9061 738966205 738966578 1.680000e-166 597.0
35 TraesCS7D01G009700 chr4A 83.568 639 30 12 942 1577 738960860 738961426 6.230000e-146 529.0
36 TraesCS7D01G009700 chr4A 89.183 416 37 7 541 949 738960137 738960551 6.270000e-141 512.0
37 TraesCS7D01G009700 chr4A 74.733 843 190 13 2837 3672 739130032 739130858 1.120000e-93 355.0
38 TraesCS7D01G009700 chr4A 77.612 603 120 10 7361 7960 739131532 739132122 1.450000e-92 351.0
39 TraesCS7D01G009700 chr4A 76.781 379 34 17 47 423 738957813 738958139 7.280000e-36 163.0
40 TraesCS7D01G009700 chr4A 90.291 103 10 0 1267 1369 739273230 739273332 1.590000e-27 135.0
41 TraesCS7D01G009700 chr4A 76.856 229 33 11 1141 1368 739065046 739065255 2.670000e-20 111.0
42 TraesCS7D01G009700 chr5A 81.574 2529 340 76 4022 6515 357814418 357816855 0.000000e+00 1973.0
43 TraesCS7D01G009700 chr5A 89.461 816 80 3 1576 2385 13506894 13507709 0.000000e+00 1026.0
44 TraesCS7D01G009700 chr5A 77.477 111 21 4 2345 2453 673931970 673932078 7.600000e-06 63.9
45 TraesCS7D01G009700 chr5D 98.079 885 17 0 1579 2463 438434346 438433462 0.000000e+00 1541.0
46 TraesCS7D01G009700 chr5D 98.055 617 12 0 1825 2441 514940320 514940936 0.000000e+00 1074.0
47 TraesCS7D01G009700 chr5D 98.889 180 1 1 6473 6651 496196483 496196662 4.080000e-83 320.0
48 TraesCS7D01G009700 chr5D 97.688 173 3 1 1576 1747 514940149 514940321 6.880000e-76 296.0
49 TraesCS7D01G009700 chr2B 83.860 1456 177 25 4014 5463 202479590 202478187 0.000000e+00 1334.0
50 TraesCS7D01G009700 chr2B 91.734 496 37 3 4014 4508 757474693 757475185 0.000000e+00 686.0
51 TraesCS7D01G009700 chr2B 94.975 199 10 0 2258 2456 24922075 24921877 6.830000e-81 313.0
52 TraesCS7D01G009700 chr7A 80.266 902 167 10 2804 3696 4432136 4431237 0.000000e+00 669.0
53 TraesCS7D01G009700 chr7A 75.768 846 173 19 2837 3672 4254321 4253498 1.830000e-106 398.0
54 TraesCS7D01G009700 chr7A 75.341 807 175 15 2837 3634 29664651 29663860 5.170000e-97 366.0
55 TraesCS7D01G009700 chr7A 76.987 604 122 12 7361 7960 29662741 29662151 6.780000e-86 329.0
56 TraesCS7D01G009700 chr7A 74.709 344 65 14 1029 1370 4433188 4432865 5.710000e-27 134.0
57 TraesCS7D01G009700 chr7A 90.722 97 9 0 1277 1373 4070351 4070255 7.380000e-26 130.0
58 TraesCS7D01G009700 chr1A 84.766 663 65 21 1581 2236 4638930 4639563 4.620000e-177 632.0
59 TraesCS7D01G009700 chr5B 85.877 616 58 14 1610 2201 15127990 15127380 5.970000e-176 628.0
60 TraesCS7D01G009700 chr5B 90.127 314 24 4 1895 2201 15073666 15073353 1.420000e-107 401.0
61 TraesCS7D01G009700 chr5B 84.988 413 43 13 1610 2013 15094027 15093625 1.420000e-107 401.0
62 TraesCS7D01G009700 chr3A 87.067 549 46 7 1921 2453 588948899 588949438 1.680000e-166 597.0
63 TraesCS7D01G009700 chr3A 89.167 360 29 2 1576 1925 588948465 588948824 3.000000e-119 440.0
64 TraesCS7D01G009700 chr7B 92.857 364 15 3 1649 2010 117021608 117021254 1.350000e-142 518.0
65 TraesCS7D01G009700 chr7B 90.083 363 15 12 1997 2340 117021233 117020873 1.390000e-122 451.0
66 TraesCS7D01G009700 chr1B 81.395 344 56 7 1871 2208 645353362 645353021 3.220000e-69 274.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G009700 chr7D 4646610 4655670 9060 True 7939.500000 15160 100.000000 1 9061 2 chr7D.!!$R8 9060
1 TraesCS7D01G009700 chr7D 154642920 154643808 888 False 1254.000000 1254 92.428000 1576 2453 1 chr7D.!!$F1 877
2 TraesCS7D01G009700 chr7D 18936600 18937564 964 True 1146.000000 1146 88.253000 4016 4981 1 chr7D.!!$R4 965
3 TraesCS7D01G009700 chr7D 608271563 608272457 894 True 878.500000 1450 96.780500 4015 6651 2 chr7D.!!$R10 2636
4 TraesCS7D01G009700 chr7D 4516841 4518837 1996 True 424.500000 708 78.139500 1029 3696 2 chr7D.!!$R7 2667
5 TraesCS7D01G009700 chr7D 29402871 29404946 2075 True 365.000000 379 76.579500 2837 7960 2 chr7D.!!$R9 5123
6 TraesCS7D01G009700 chr7D 4424886 4425709 823 True 364.000000 364 74.970000 2837 3672 1 chr7D.!!$R2 835
7 TraesCS7D01G009700 chr6D 49838664 49841291 2627 True 3884.000000 3884 93.328000 4013 6653 1 chr6D.!!$R1 2640
8 TraesCS7D01G009700 chr6D 71121754 71122612 858 False 996.000000 996 87.848000 1576 2448 1 chr6D.!!$F1 872
9 TraesCS7D01G009700 chr2D 189371411 189373984 2573 True 3363.000000 3363 90.328000 4015 6589 1 chr2D.!!$R1 2574
10 TraesCS7D01G009700 chr2D 382182154 382184314 2160 True 2750.000000 2750 89.688000 4391 6557 1 chr2D.!!$R3 2166
11 TraesCS7D01G009700 chr6B 10379434 10382074 2640 False 3179.000000 3179 88.446000 4008 6651 1 chr6B.!!$F1 2643
12 TraesCS7D01G009700 chr6B 610073307 610075507 2200 True 2736.000000 2736 89.134000 4348 6554 1 chr6B.!!$R1 2206
13 TraesCS7D01G009700 chr6B 145885129 145885993 864 False 303.333333 634 88.882333 1576 2374 3 chr6B.!!$F2 798
14 TraesCS7D01G009700 chr1D 418309677 418311837 2160 True 2806.000000 2806 90.156000 4363 6529 1 chr1D.!!$R1 2166
15 TraesCS7D01G009700 chr3D 12216247 12218472 2225 True 2780.000000 2780 89.279000 4326 6556 1 chr3D.!!$R1 2230
16 TraesCS7D01G009700 chr3D 600087955 600090188 2233 True 2695.000000 2695 88.528000 4313 6545 1 chr3D.!!$R2 2232
17 TraesCS7D01G009700 chr3B 210601463 210603710 2247 True 2663.000000 2663 88.124000 4306 6556 1 chr3B.!!$R1 2250
18 TraesCS7D01G009700 chr4A 738957813 738966578 8765 False 1066.833333 2322 88.592333 47 9061 6 chr4A.!!$F2 9014
19 TraesCS7D01G009700 chr4A 739065046 739066925 1879 False 399.500000 688 78.858500 1141 3696 2 chr4A.!!$F3 2555
20 TraesCS7D01G009700 chr4A 739130032 739132122 2090 False 353.000000 355 76.172500 2837 7960 2 chr4A.!!$F4 5123
21 TraesCS7D01G009700 chr5A 357814418 357816855 2437 False 1973.000000 1973 81.574000 4022 6515 1 chr5A.!!$F2 2493
22 TraesCS7D01G009700 chr5A 13506894 13507709 815 False 1026.000000 1026 89.461000 1576 2385 1 chr5A.!!$F1 809
23 TraesCS7D01G009700 chr5D 438433462 438434346 884 True 1541.000000 1541 98.079000 1579 2463 1 chr5D.!!$R1 884
24 TraesCS7D01G009700 chr5D 514940149 514940936 787 False 685.000000 1074 97.871500 1576 2441 2 chr5D.!!$F2 865
25 TraesCS7D01G009700 chr2B 202478187 202479590 1403 True 1334.000000 1334 83.860000 4014 5463 1 chr2B.!!$R2 1449
26 TraesCS7D01G009700 chr7A 4431237 4433188 1951 True 401.500000 669 77.487500 1029 3696 2 chr7A.!!$R3 2667
27 TraesCS7D01G009700 chr7A 4253498 4254321 823 True 398.000000 398 75.768000 2837 3672 1 chr7A.!!$R2 835
28 TraesCS7D01G009700 chr7A 29662151 29664651 2500 True 347.500000 366 76.164000 2837 7960 2 chr7A.!!$R4 5123
29 TraesCS7D01G009700 chr1A 4638930 4639563 633 False 632.000000 632 84.766000 1581 2236 1 chr1A.!!$F1 655
30 TraesCS7D01G009700 chr5B 15127380 15127990 610 True 628.000000 628 85.877000 1610 2201 1 chr5B.!!$R3 591
31 TraesCS7D01G009700 chr3A 588948465 588949438 973 False 518.500000 597 88.117000 1576 2453 2 chr3A.!!$F1 877
32 TraesCS7D01G009700 chr7B 117020873 117021608 735 True 484.500000 518 91.470000 1649 2340 2 chr7B.!!$R1 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
483 485 0.033781 CACAGGCCCACCACAAAATG 59.966 55.0 0.00 0.00 39.06 2.32 F
523 525 0.106149 GTTAGTTGATCCCCGCCGAT 59.894 55.0 0.00 0.00 0.00 4.18 F
1398 3611 0.180406 ATTTCCCCTCCATTCGGACG 59.820 55.0 0.00 0.00 35.91 4.79 F
2546 5407 0.235665 CAACGCTGCAGTACCAAGTG 59.764 55.0 16.64 0.00 0.00 3.16 F
3393 6256 0.456221 AGTGCATCGACTTCTACCCG 59.544 55.0 0.00 0.00 0.00 5.28 F
3873 7232 0.457035 TCTCCGGTATGCAACGTACC 59.543 55.0 0.00 5.09 38.56 3.34 F
3883 7242 1.083489 GCAACGTACCTGCATGCTTA 58.917 50.0 20.33 4.70 39.69 3.09 F
5961 9379 0.880278 CGGATGGCGTGGATCGATTT 60.880 55.0 0.00 0.00 42.86 2.17 F
7655 11152 0.035056 CCTTTGGCCTCATCGTCCTT 60.035 55.0 3.32 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 4094 0.316841 GATTTTTGGCAGCGTTGGGA 59.683 50.000 0.16 0.0 0.00 4.37 R
2047 4861 0.816825 TCGTCCGCGGCTAGATTACT 60.817 55.000 23.51 0.0 38.89 2.24 R
2772 5634 0.034670 CCTCCTTGCCCTTCTTGAGG 60.035 60.000 0.00 0.0 45.86 3.86 R
3847 7206 1.179152 TGCATACCGGAGAAGAACGA 58.821 50.000 9.46 0.0 0.00 3.85 R
4769 8147 0.324368 AGGTCCCAGTCTACGCATGA 60.324 55.000 0.00 0.0 0.00 3.07 R
5814 9217 2.142357 CTGCTCCGTTGGTCACTCGA 62.142 60.000 0.00 0.0 0.00 4.04 R
6022 9440 1.068250 GGAGACCTGCATCGCCTAC 59.932 63.158 3.08 0.0 35.78 3.18 R
7970 11467 0.034337 GTCTTTCCGCCACCACACTA 59.966 55.000 0.00 0.0 0.00 2.74 R
8818 13378 0.035317 AATGCGAGGAGTGCAAGACA 59.965 50.000 0.00 0.0 46.87 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.726607 AGCATCACTACTAGCTCATTGC 58.273 45.455 0.00 0.00 43.29 3.56
37 38 5.464965 GCTCATTGCTTTCATCAAATTGG 57.535 39.130 0.00 0.00 38.95 3.16
38 39 5.172934 GCTCATTGCTTTCATCAAATTGGA 58.827 37.500 0.00 0.00 38.95 3.53
39 40 5.640357 GCTCATTGCTTTCATCAAATTGGAA 59.360 36.000 0.00 0.00 38.95 3.53
40 41 6.148150 GCTCATTGCTTTCATCAAATTGGAAA 59.852 34.615 0.00 0.00 38.95 3.13
41 42 7.424227 TCATTGCTTTCATCAAATTGGAAAC 57.576 32.000 0.00 0.00 0.00 2.78
42 43 6.990939 TCATTGCTTTCATCAAATTGGAAACA 59.009 30.769 0.00 0.00 39.83 2.83
43 44 6.601741 TTGCTTTCATCAAATTGGAAACAC 57.398 33.333 0.00 0.00 42.67 3.32
44 45 5.668471 TGCTTTCATCAAATTGGAAACACA 58.332 33.333 0.00 0.00 42.67 3.72
45 46 6.289834 TGCTTTCATCAAATTGGAAACACAT 58.710 32.000 0.00 0.00 42.67 3.21
78 79 2.385315 GCAAAAGTCAAGGTTCTTCGC 58.615 47.619 0.00 0.00 0.00 4.70
86 87 2.119457 CAAGGTTCTTCGCTTTGCAAC 58.881 47.619 0.00 0.00 0.00 4.17
95 96 4.673311 TCTTCGCTTTGCAACGAAATAAAC 59.327 37.500 20.85 0.00 46.52 2.01
104 105 3.608073 GCAACGAAATAAACCACATGCTC 59.392 43.478 0.00 0.00 0.00 4.26
135 136 6.685527 TGTGCAAGTACACAGAAAATACAA 57.314 33.333 0.00 0.00 45.36 2.41
136 137 7.089770 TGTGCAAGTACACAGAAAATACAAA 57.910 32.000 0.00 0.00 45.36 2.83
137 138 7.192913 TGTGCAAGTACACAGAAAATACAAAG 58.807 34.615 0.00 0.00 45.36 2.77
138 139 7.148154 TGTGCAAGTACACAGAAAATACAAAGT 60.148 33.333 0.00 0.00 45.36 2.66
139 140 7.700656 GTGCAAGTACACAGAAAATACAAAGTT 59.299 33.333 0.00 0.00 40.40 2.66
140 141 8.247562 TGCAAGTACACAGAAAATACAAAGTTT 58.752 29.630 0.00 0.00 0.00 2.66
141 142 9.083080 GCAAGTACACAGAAAATACAAAGTTTT 57.917 29.630 0.00 0.00 0.00 2.43
160 161 9.850198 AAAGTTTTAGGTACACACAGGTAAATA 57.150 29.630 0.00 0.00 0.00 1.40
166 167 7.787623 AGGTACACACAGGTAAATAGTAACT 57.212 36.000 0.00 0.00 0.00 2.24
190 191 3.879998 TGTTTCTTACAGAGCACAACCA 58.120 40.909 0.00 0.00 31.68 3.67
194 195 4.882842 TCTTACAGAGCACAACCATACA 57.117 40.909 0.00 0.00 0.00 2.29
271 272 9.750125 ATGTAGATTTTTCAAGGTCTTTTTGAC 57.250 29.630 0.00 0.00 44.63 3.18
275 276 9.671279 AGATTTTTCAAGGTCTTTTTGACATTT 57.329 25.926 0.00 0.00 45.94 2.32
282 283 8.865001 TCAAGGTCTTTTTGACATTTAAAAACG 58.135 29.630 0.00 0.00 45.94 3.60
283 284 8.652463 CAAGGTCTTTTTGACATTTAAAAACGT 58.348 29.630 0.00 0.00 45.94 3.99
284 285 9.210329 AAGGTCTTTTTGACATTTAAAAACGTT 57.790 25.926 0.00 0.00 45.94 3.99
314 315 4.993029 TGTTTTGGAAACCTCATTTCGT 57.007 36.364 1.53 0.00 46.72 3.85
319 320 6.654793 TTTGGAAACCTCATTTCGTTTTTG 57.345 33.333 0.00 0.00 46.72 2.44
320 321 5.584253 TGGAAACCTCATTTCGTTTTTGA 57.416 34.783 0.00 0.00 46.72 2.69
322 323 6.212955 TGGAAACCTCATTTCGTTTTTGATC 58.787 36.000 0.00 0.00 46.72 2.92
324 325 6.405278 AAACCTCATTTCGTTTTTGATCCT 57.595 33.333 0.00 0.00 0.00 3.24
325 326 6.405278 AACCTCATTTCGTTTTTGATCCTT 57.595 33.333 0.00 0.00 0.00 3.36
326 327 5.772521 ACCTCATTTCGTTTTTGATCCTTG 58.227 37.500 0.00 0.00 0.00 3.61
327 328 4.622740 CCTCATTTCGTTTTTGATCCTTGC 59.377 41.667 0.00 0.00 0.00 4.01
328 329 4.225984 TCATTTCGTTTTTGATCCTTGCG 58.774 39.130 0.00 0.00 0.00 4.85
329 330 2.044888 TTCGTTTTTGATCCTTGCGC 57.955 45.000 0.00 0.00 0.00 6.09
332 333 0.603065 GTTTTTGATCCTTGCGCCCT 59.397 50.000 4.18 0.00 0.00 5.19
333 334 1.000843 GTTTTTGATCCTTGCGCCCTT 59.999 47.619 4.18 0.00 0.00 3.95
334 335 0.887933 TTTTGATCCTTGCGCCCTTC 59.112 50.000 4.18 0.00 0.00 3.46
335 336 0.251121 TTTGATCCTTGCGCCCTTCA 60.251 50.000 4.18 0.00 0.00 3.02
336 337 0.034186 TTGATCCTTGCGCCCTTCAT 60.034 50.000 4.18 0.00 0.00 2.57
337 338 0.464373 TGATCCTTGCGCCCTTCATC 60.464 55.000 4.18 0.45 0.00 2.92
339 340 2.947938 ATCCTTGCGCCCTTCATCCG 62.948 60.000 4.18 0.00 0.00 4.18
340 341 2.436646 CTTGCGCCCTTCATCCGT 60.437 61.111 4.18 0.00 0.00 4.69
341 342 2.033448 TTGCGCCCTTCATCCGTT 59.967 55.556 4.18 0.00 0.00 4.44
342 343 2.257286 CTTGCGCCCTTCATCCGTTG 62.257 60.000 4.18 0.00 0.00 4.10
343 344 2.746277 GCGCCCTTCATCCGTTGT 60.746 61.111 0.00 0.00 0.00 3.32
344 345 1.448893 GCGCCCTTCATCCGTTGTA 60.449 57.895 0.00 0.00 0.00 2.41
345 346 1.429148 GCGCCCTTCATCCGTTGTAG 61.429 60.000 0.00 0.00 0.00 2.74
351 352 3.930848 CCCTTCATCCGTTGTAGTTGTAC 59.069 47.826 0.00 0.00 0.00 2.90
396 398 9.603921 CAAATTAATTTAATCCCATGAACAGCT 57.396 29.630 12.98 0.00 0.00 4.24
398 400 8.773033 ATTAATTTAATCCCATGAACAGCTCT 57.227 30.769 0.00 0.00 0.00 4.09
400 402 2.431954 AATCCCATGAACAGCTCTGG 57.568 50.000 0.00 0.00 34.19 3.86
413 415 4.774820 TCTGGAGCCAGAGGAGAC 57.225 61.111 15.01 0.00 46.80 3.36
423 425 2.752030 CCAGAGGAGACCAATCCAGTA 58.248 52.381 0.00 0.00 42.26 2.74
426 428 4.202305 CCAGAGGAGACCAATCCAGTATTC 60.202 50.000 0.00 0.00 42.26 1.75
428 430 5.835819 CAGAGGAGACCAATCCAGTATTCTA 59.164 44.000 0.00 0.00 42.26 2.10
431 433 8.235230 AGAGGAGACCAATCCAGTATTCTATTA 58.765 37.037 0.00 0.00 42.26 0.98
433 435 9.041354 AGGAGACCAATCCAGTATTCTATTATC 57.959 37.037 0.00 0.00 42.26 1.75
455 457 6.509418 TCTTAGGGAAACATAAACACATGC 57.491 37.500 0.00 0.00 35.96 4.06
456 458 5.417580 TCTTAGGGAAACATAAACACATGCC 59.582 40.000 0.00 0.00 35.96 4.40
460 462 4.322650 GGGAAACATAAACACATGCCACAT 60.323 41.667 0.00 0.00 0.00 3.21
461 463 4.864247 GGAAACATAAACACATGCCACATC 59.136 41.667 0.00 0.00 0.00 3.06
462 464 5.465532 AAACATAAACACATGCCACATCA 57.534 34.783 0.00 0.00 0.00 3.07
466 468 3.581024 AAACACATGCCACATCATCAC 57.419 42.857 0.00 0.00 0.00 3.06
467 469 2.203470 ACACATGCCACATCATCACA 57.797 45.000 0.00 0.00 0.00 3.58
470 472 0.384309 CATGCCACATCATCACAGGC 59.616 55.000 0.00 0.00 45.41 4.85
471 473 0.754217 ATGCCACATCATCACAGGCC 60.754 55.000 0.00 0.00 44.60 5.19
472 474 2.123428 GCCACATCATCACAGGCCC 61.123 63.158 0.00 0.00 39.42 5.80
473 475 1.303948 CCACATCATCACAGGCCCA 59.696 57.895 0.00 0.00 0.00 5.36
474 476 1.033746 CCACATCATCACAGGCCCAC 61.034 60.000 0.00 0.00 0.00 4.61
475 477 1.033746 CACATCATCACAGGCCCACC 61.034 60.000 0.00 0.00 0.00 4.61
477 479 1.033746 CATCATCACAGGCCCACCAC 61.034 60.000 0.00 0.00 39.06 4.16
478 480 1.499913 ATCATCACAGGCCCACCACA 61.500 55.000 0.00 0.00 39.06 4.17
479 481 1.228521 CATCACAGGCCCACCACAA 60.229 57.895 0.00 0.00 39.06 3.33
480 482 0.827089 CATCACAGGCCCACCACAAA 60.827 55.000 0.00 0.00 39.06 2.83
481 483 0.105760 ATCACAGGCCCACCACAAAA 60.106 50.000 0.00 0.00 39.06 2.44
482 484 0.105760 TCACAGGCCCACCACAAAAT 60.106 50.000 0.00 0.00 39.06 1.82
483 485 0.033781 CACAGGCCCACCACAAAATG 59.966 55.000 0.00 0.00 39.06 2.32
484 486 1.004679 CAGGCCCACCACAAAATGC 60.005 57.895 0.00 0.00 39.06 3.56
485 487 1.459158 AGGCCCACCACAAAATGCA 60.459 52.632 0.00 0.00 39.06 3.96
487 489 1.664333 GCCCACCACAAAATGCACG 60.664 57.895 0.00 0.00 0.00 5.34
488 490 1.664333 CCCACCACAAAATGCACGC 60.664 57.895 0.00 0.00 0.00 5.34
491 493 1.284657 CACCACAAAATGCACGCAAA 58.715 45.000 0.00 0.00 0.00 3.68
492 494 1.005137 CACCACAAAATGCACGCAAAC 60.005 47.619 0.00 0.00 0.00 2.93
493 495 1.134848 ACCACAAAATGCACGCAAACT 60.135 42.857 0.00 0.00 0.00 2.66
494 496 2.099921 ACCACAAAATGCACGCAAACTA 59.900 40.909 0.00 0.00 0.00 2.24
495 497 2.470999 CCACAAAATGCACGCAAACTAC 59.529 45.455 0.00 0.00 0.00 2.73
496 498 3.371168 CACAAAATGCACGCAAACTACT 58.629 40.909 0.00 0.00 0.00 2.57
497 499 3.796178 CACAAAATGCACGCAAACTACTT 59.204 39.130 0.00 0.00 0.00 2.24
498 500 4.041723 ACAAAATGCACGCAAACTACTTC 58.958 39.130 0.00 0.00 0.00 3.01
500 502 3.813529 AATGCACGCAAACTACTTCTC 57.186 42.857 0.00 0.00 0.00 2.87
501 503 2.232756 TGCACGCAAACTACTTCTCA 57.767 45.000 0.00 0.00 0.00 3.27
504 506 2.096713 GCACGCAAACTACTTCTCACTG 60.097 50.000 0.00 0.00 0.00 3.66
505 507 3.123804 CACGCAAACTACTTCTCACTGT 58.876 45.455 0.00 0.00 0.00 3.55
506 508 3.555956 CACGCAAACTACTTCTCACTGTT 59.444 43.478 0.00 0.00 0.00 3.16
508 510 4.982916 ACGCAAACTACTTCTCACTGTTAG 59.017 41.667 0.00 0.00 0.00 2.34
510 512 5.462398 CGCAAACTACTTCTCACTGTTAGTT 59.538 40.000 0.00 0.00 0.00 2.24
511 513 6.562270 CGCAAACTACTTCTCACTGTTAGTTG 60.562 42.308 2.17 0.00 0.00 3.16
513 515 7.171678 GCAAACTACTTCTCACTGTTAGTTGAT 59.828 37.037 2.17 0.00 0.00 2.57
514 516 8.704234 CAAACTACTTCTCACTGTTAGTTGATC 58.296 37.037 2.17 0.00 0.00 2.92
515 517 6.926313 ACTACTTCTCACTGTTAGTTGATCC 58.074 40.000 0.00 0.00 0.00 3.36
516 518 5.153950 ACTTCTCACTGTTAGTTGATCCC 57.846 43.478 0.00 0.00 0.00 3.85
517 519 4.020128 ACTTCTCACTGTTAGTTGATCCCC 60.020 45.833 0.00 0.00 0.00 4.81
518 520 2.496070 TCTCACTGTTAGTTGATCCCCG 59.504 50.000 0.00 0.00 0.00 5.73
519 521 1.066430 TCACTGTTAGTTGATCCCCGC 60.066 52.381 0.00 0.00 0.00 6.13
521 523 0.810031 CTGTTAGTTGATCCCCGCCG 60.810 60.000 0.00 0.00 0.00 6.46
522 524 1.259142 TGTTAGTTGATCCCCGCCGA 61.259 55.000 0.00 0.00 0.00 5.54
523 525 0.106149 GTTAGTTGATCCCCGCCGAT 59.894 55.000 0.00 0.00 0.00 4.18
524 526 0.834612 TTAGTTGATCCCCGCCGATT 59.165 50.000 0.00 0.00 0.00 3.34
525 527 0.391597 TAGTTGATCCCCGCCGATTC 59.608 55.000 0.00 0.00 0.00 2.52
526 528 1.146263 GTTGATCCCCGCCGATTCT 59.854 57.895 0.00 0.00 0.00 2.40
528 530 1.002087 GTTGATCCCCGCCGATTCTAT 59.998 52.381 0.00 0.00 0.00 1.98
529 531 1.348064 TGATCCCCGCCGATTCTATT 58.652 50.000 0.00 0.00 0.00 1.73
530 532 1.697432 TGATCCCCGCCGATTCTATTT 59.303 47.619 0.00 0.00 0.00 1.40
531 533 2.901192 TGATCCCCGCCGATTCTATTTA 59.099 45.455 0.00 0.00 0.00 1.40
532 534 3.517901 TGATCCCCGCCGATTCTATTTAT 59.482 43.478 0.00 0.00 0.00 1.40
533 535 4.019681 TGATCCCCGCCGATTCTATTTATT 60.020 41.667 0.00 0.00 0.00 1.40
534 536 4.360951 TCCCCGCCGATTCTATTTATTT 57.639 40.909 0.00 0.00 0.00 1.40
535 537 4.320870 TCCCCGCCGATTCTATTTATTTC 58.679 43.478 0.00 0.00 0.00 2.17
536 538 4.069304 CCCCGCCGATTCTATTTATTTCA 58.931 43.478 0.00 0.00 0.00 2.69
538 540 5.449304 CCCGCCGATTCTATTTATTTCAAC 58.551 41.667 0.00 0.00 0.00 3.18
539 541 5.008217 CCCGCCGATTCTATTTATTTCAACA 59.992 40.000 0.00 0.00 0.00 3.33
567 2449 6.071952 CCACCGCTAATAATATTTGCTTCCAT 60.072 38.462 15.15 0.00 0.00 3.41
570 2452 8.730680 ACCGCTAATAATATTTGCTTCCATAAG 58.269 33.333 15.15 0.65 35.68 1.73
624 2506 6.851222 ACATTCAACTAATATCTCAAGCGG 57.149 37.500 0.00 0.00 0.00 5.52
632 2514 7.108841 ACTAATATCTCAAGCGGAACACTTA 57.891 36.000 0.00 0.00 0.00 2.24
634 2516 6.663944 AATATCTCAAGCGGAACACTTAAC 57.336 37.500 0.00 0.00 0.00 2.01
640 2522 2.927028 AGCGGAACACTTAACTTTGGT 58.073 42.857 0.00 0.00 0.00 3.67
646 2528 4.278419 GGAACACTTAACTTTGGTGAGCAT 59.722 41.667 0.00 0.00 35.28 3.79
657 2545 5.009010 ACTTTGGTGAGCATTTCTACTGTTG 59.991 40.000 0.00 0.00 0.00 3.33
715 2603 8.978874 TGCCTAACATTACTTGATATTCACAT 57.021 30.769 0.00 0.00 0.00 3.21
742 2630 3.542676 ACGCGTGGACACCCAGAA 61.543 61.111 12.93 0.00 44.55 3.02
743 2631 2.280524 CGCGTGGACACCCAGAAA 60.281 61.111 0.00 0.00 44.55 2.52
748 2636 2.223947 GCGTGGACACCCAGAAATTTTT 60.224 45.455 0.00 0.00 44.55 1.94
749 2637 3.380142 CGTGGACACCCAGAAATTTTTG 58.620 45.455 1.75 1.75 44.55 2.44
750 2638 3.181480 CGTGGACACCCAGAAATTTTTGT 60.181 43.478 7.83 0.19 44.55 2.83
761 2649 2.812358 AATTTTTGTCCCAAGTCCGC 57.188 45.000 0.00 0.00 0.00 5.54
814 2702 0.652592 CGCCAATTCTCGGACATCAC 59.347 55.000 0.00 0.00 0.00 3.06
819 2707 2.743664 CAATTCTCGGACATCACAGCAA 59.256 45.455 0.00 0.00 0.00 3.91
822 2710 3.057969 TCTCGGACATCACAGCAAAAT 57.942 42.857 0.00 0.00 0.00 1.82
829 2717 1.098050 ATCACAGCAAAATCCCGAGC 58.902 50.000 0.00 0.00 0.00 5.03
835 2723 1.747355 AGCAAAATCCCGAGCATTGAG 59.253 47.619 0.00 0.00 0.00 3.02
849 2737 6.258160 CGAGCATTGAGGTTAATAGTTTTGG 58.742 40.000 0.00 0.00 0.00 3.28
858 2746 5.828328 AGGTTAATAGTTTTGGCTATCCTGC 59.172 40.000 0.00 0.00 31.80 4.85
906 2795 2.004017 TGACGTATTAAAAGCAGCGGG 58.996 47.619 0.00 0.00 0.00 6.13
929 2818 7.019418 GGGCTTATTTCTAAACACTGTTAACG 58.981 38.462 0.26 0.00 0.00 3.18
949 2838 9.276397 GTTAACGTTGTAAAGCTAAAGTGAAAA 57.724 29.630 11.99 0.00 0.00 2.29
951 2840 8.556517 AACGTTGTAAAGCTAAAGTGAAAATC 57.443 30.769 0.00 0.00 0.00 2.17
952 2841 7.136772 ACGTTGTAAAGCTAAAGTGAAAATCC 58.863 34.615 0.00 0.00 0.00 3.01
953 2842 6.302313 CGTTGTAAAGCTAAAGTGAAAATCCG 59.698 38.462 0.00 0.00 0.00 4.18
954 2843 5.695818 TGTAAAGCTAAAGTGAAAATCCGC 58.304 37.500 0.00 0.00 0.00 5.54
955 2844 3.850122 AAGCTAAAGTGAAAATCCGCC 57.150 42.857 0.00 0.00 0.00 6.13
958 2847 0.806241 TAAAGTGAAAATCCGCCGCC 59.194 50.000 0.00 0.00 0.00 6.13
975 3182 1.748403 CCGCAGCCCAGCTCTATAA 59.252 57.895 0.00 0.00 36.40 0.98
994 3201 0.663153 AAAAACGTGCTGGCTCACTC 59.337 50.000 0.00 0.00 34.92 3.51
1033 3240 4.875536 AGTCCACCAATTTTTGTTTCTTGC 59.124 37.500 0.00 0.00 0.00 4.01
1037 3244 5.447548 CCACCAATTTTTGTTTCTTGCAGTG 60.448 40.000 0.00 0.00 0.00 3.66
1039 3246 4.333372 CCAATTTTTGTTTCTTGCAGTGCT 59.667 37.500 17.60 0.00 0.00 4.40
1134 3344 2.507944 GAGGACGCCCATGAGCAT 59.492 61.111 0.00 0.00 33.88 3.79
1207 3417 4.892965 TGGTGCTGGTGGTGGTGC 62.893 66.667 0.00 0.00 0.00 5.01
1213 3423 3.093172 TGGTGGTGGTGCTGGTCA 61.093 61.111 0.00 0.00 0.00 4.02
1256 3466 4.394712 CAGGGTGGACCAGGCGTC 62.395 72.222 0.00 0.00 43.89 5.19
1264 3474 2.047274 ACCAGGCGTCGGTCAATG 60.047 61.111 0.00 0.00 27.30 2.82
1265 3475 2.819595 CCAGGCGTCGGTCAATGG 60.820 66.667 0.00 0.00 0.00 3.16
1278 3488 3.849951 AATGGCGCCGACGAGGAT 61.850 61.111 23.90 4.35 45.00 3.24
1344 3557 1.595093 CCACGTTCCATTTCCAGCCC 61.595 60.000 0.00 0.00 0.00 5.19
1390 3603 4.081309 CGTGACTAGTTAATTTCCCCTCCA 60.081 45.833 0.00 0.00 0.00 3.86
1392 3605 6.424032 GTGACTAGTTAATTTCCCCTCCATT 58.576 40.000 0.00 0.00 0.00 3.16
1395 3608 3.898482 AGTTAATTTCCCCTCCATTCGG 58.102 45.455 0.00 0.00 0.00 4.30
1396 3609 3.526019 AGTTAATTTCCCCTCCATTCGGA 59.474 43.478 0.00 0.00 39.79 4.55
1397 3610 2.437085 AATTTCCCCTCCATTCGGAC 57.563 50.000 0.00 0.00 35.91 4.79
1398 3611 0.180406 ATTTCCCCTCCATTCGGACG 59.820 55.000 0.00 0.00 35.91 4.79
1399 3612 0.905809 TTTCCCCTCCATTCGGACGA 60.906 55.000 0.00 0.00 35.91 4.20
1400 3613 0.689745 TTCCCCTCCATTCGGACGAT 60.690 55.000 0.00 0.00 35.91 3.73
1401 3614 0.689745 TCCCCTCCATTCGGACGATT 60.690 55.000 0.00 0.00 35.91 3.34
1430 3643 7.692908 TTCAGATTCAAATTCCGTTTGTTTC 57.307 32.000 1.05 0.76 45.87 2.78
1547 3778 2.056577 GTACGTTAGTGCACACTGACC 58.943 52.381 21.04 3.26 42.76 4.02
1548 3779 0.462375 ACGTTAGTGCACACTGACCA 59.538 50.000 21.04 0.00 42.76 4.02
1549 3780 1.139989 CGTTAGTGCACACTGACCAG 58.860 55.000 21.04 3.86 42.76 4.00
1563 3794 2.169352 CTGACCAGAACGGAGATTCCAT 59.831 50.000 0.00 0.00 35.91 3.41
1577 3808 6.363065 GGAGATTCCATGTGGCATATATGAT 58.637 40.000 17.10 0.00 36.28 2.45
1751 4094 1.257750 TACTCCCAGCGCACTGTCAT 61.258 55.000 11.47 0.00 42.81 3.06
1779 4122 3.221964 CTGCCAAAAATCACAGCCTAC 57.778 47.619 0.00 0.00 0.00 3.18
1780 4123 1.539388 TGCCAAAAATCACAGCCTACG 59.461 47.619 0.00 0.00 0.00 3.51
1781 4124 1.732405 GCCAAAAATCACAGCCTACGC 60.732 52.381 0.00 0.00 0.00 4.42
2047 4861 5.106555 GCTTGATGAGAAGACCAAAAATCGA 60.107 40.000 0.00 0.00 0.00 3.59
2465 5322 8.266363 ACCGTAAAAGGTCCCATATTATAAGA 57.734 34.615 0.00 0.00 41.46 2.10
2508 5369 9.895138 TCCTAACTCACTTTGTTAAGTTTAACT 57.105 29.630 13.99 0.00 41.85 2.24
2546 5407 0.235665 CAACGCTGCAGTACCAAGTG 59.764 55.000 16.64 0.00 0.00 3.16
2566 5427 4.526262 AGTGAGTATATCAGTGGATCCAGC 59.474 45.833 16.81 10.43 40.23 4.85
2572 5433 1.741401 CAGTGGATCCAGCGCGAAA 60.741 57.895 16.81 0.00 0.00 3.46
2573 5434 1.091771 CAGTGGATCCAGCGCGAAAT 61.092 55.000 16.81 0.00 0.00 2.17
2609 5471 7.531716 TGAAACTTATACGCCCTGTATTTTTG 58.468 34.615 0.00 0.00 41.01 2.44
2610 5472 7.175293 TGAAACTTATACGCCCTGTATTTTTGT 59.825 33.333 0.00 0.00 41.01 2.83
2612 5474 8.564509 AACTTATACGCCCTGTATTTTTGTAA 57.435 30.769 0.00 0.00 41.01 2.41
2613 5475 8.205131 ACTTATACGCCCTGTATTTTTGTAAG 57.795 34.615 0.00 0.00 41.01 2.34
2614 5476 3.842732 ACGCCCTGTATTTTTGTAAGC 57.157 42.857 0.00 0.00 0.00 3.09
2615 5477 3.418047 ACGCCCTGTATTTTTGTAAGCT 58.582 40.909 0.00 0.00 0.00 3.74
2620 5482 6.568844 CGCCCTGTATTTTTGTAAGCTAACAA 60.569 38.462 0.00 0.00 37.58 2.83
2623 5485 7.039993 CCCTGTATTTTTGTAAGCTAACAAGGT 60.040 37.037 0.00 0.00 40.29 3.50
2639 5501 7.061789 GCTAACAAGGTTGAAATTATTTGACCG 59.938 37.037 11.63 4.70 32.24 4.79
2645 5507 7.758495 AGGTTGAAATTATTTGACCGATACAC 58.242 34.615 11.63 0.00 32.24 2.90
2677 5539 1.355720 ACCTCACCCAAAGGAATGGAG 59.644 52.381 0.00 0.00 43.54 3.86
2681 5543 2.654385 TCACCCAAAGGAATGGAGGAAT 59.346 45.455 0.00 0.00 43.54 3.01
2688 5550 6.239973 CCCAAAGGAATGGAGGAATTTTCTTT 60.240 38.462 0.00 0.00 43.54 2.52
2693 5555 6.493458 AGGAATGGAGGAATTTTCTTTCGAAA 59.507 34.615 10.71 10.71 37.36 3.46
2747 5609 7.542130 GCTACCCAAAGAAACATATGTGAAAAG 59.458 37.037 9.63 0.00 0.00 2.27
2772 5634 4.265073 AGTTGGTGATCTAAACATGAGGC 58.735 43.478 0.00 0.00 0.00 4.70
2773 5635 3.281727 TGGTGATCTAAACATGAGGCC 57.718 47.619 0.00 0.00 0.00 5.19
2779 5642 4.471025 TGATCTAAACATGAGGCCTCAAGA 59.529 41.667 37.61 32.56 43.58 3.02
2788 5651 4.009015 GCCTCAAGAAGGGCAAGG 57.991 61.111 0.00 0.00 46.32 3.61
2944 5807 1.883732 CGAGACATCGTCCACTGGT 59.116 57.895 0.00 0.00 44.09 4.00
2952 5815 1.525995 CGTCCACTGGTGCCAACTT 60.526 57.895 0.00 0.00 0.00 2.66
2958 5821 2.513753 CACTGGTGCCAACTTCCATTA 58.486 47.619 0.00 0.00 0.00 1.90
3393 6256 0.456221 AGTGCATCGACTTCTACCCG 59.544 55.000 0.00 0.00 0.00 5.28
3510 6385 2.258286 GCGGCAAACACATGGACC 59.742 61.111 0.00 0.00 0.00 4.46
3644 6519 4.477975 CGGTGAGGTCGACTCCGC 62.478 72.222 16.46 13.23 46.01 5.54
3646 6521 3.429141 GTGAGGTCGACTCCGCGA 61.429 66.667 16.46 0.00 46.01 5.87
3699 6574 9.647918 TCAATCCAGGTATATATCTATCTGTCC 57.352 37.037 7.42 0.00 0.00 4.02
3718 6593 4.217767 TGTCCATACTACACATCGATAGCC 59.782 45.833 0.00 0.00 0.00 3.93
3744 6626 5.559227 TGATTGTTTTACGATCTTGCATCG 58.441 37.500 6.65 6.65 46.02 3.84
3775 7134 7.975058 TCATTGGTTCATTATGCATGTTTACTG 59.025 33.333 10.16 0.00 34.06 2.74
3807 7166 2.360483 TCAACGCATTGCCTCTTGAAAA 59.640 40.909 2.41 0.00 35.63 2.29
3813 7172 3.259064 CATTGCCTCTTGAAAATGCTGG 58.741 45.455 0.00 0.00 0.00 4.85
3814 7173 1.259609 TGCCTCTTGAAAATGCTGGG 58.740 50.000 0.00 0.00 0.00 4.45
3827 7186 5.559148 AAATGCTGGGGTTGTTAAATCAA 57.441 34.783 0.00 0.00 0.00 2.57
3869 7228 1.659098 GTTCTTCTCCGGTATGCAACG 59.341 52.381 0.00 0.00 0.00 4.10
3873 7232 0.457035 TCTCCGGTATGCAACGTACC 59.543 55.000 0.00 5.09 38.56 3.34
3883 7242 1.083489 GCAACGTACCTGCATGCTTA 58.917 50.000 20.33 4.70 39.69 3.09
3893 7252 4.813027 ACCTGCATGCTTAAAATGTTGAG 58.187 39.130 20.33 2.68 0.00 3.02
3912 7271 4.349682 CCTGCATGGCTGATTGGT 57.650 55.556 0.00 0.00 0.00 3.67
3920 7279 1.255882 TGGCTGATTGGTTGCGAAAT 58.744 45.000 0.00 0.00 0.00 2.17
3932 7291 6.121776 TGGTTGCGAAATATGGACCTATAT 57.878 37.500 0.00 0.00 0.00 0.86
4064 7426 8.437360 TGCGGAATATGATGGATGTATTATTC 57.563 34.615 0.00 0.00 0.00 1.75
4069 7431 8.757982 AATATGATGGATGTATTATTCAGCCC 57.242 34.615 3.79 0.00 40.19 5.19
4750 8126 2.432628 GTGGACGAAGGCACTCGG 60.433 66.667 12.69 0.00 38.49 4.63
4855 8236 2.050714 GACTCGACGACGGTTGCA 60.051 61.111 7.55 0.00 40.21 4.08
5961 9379 0.880278 CGGATGGCGTGGATCGATTT 60.880 55.000 0.00 0.00 42.86 2.17
5962 9380 1.604438 CGGATGGCGTGGATCGATTTA 60.604 52.381 0.00 0.00 42.86 1.40
5970 9388 1.364901 GGATCGATTTACGGGCCGA 59.635 57.895 35.78 11.41 42.82 5.54
6037 9455 1.521681 GGTGTAGGCGATGCAGGTC 60.522 63.158 0.00 0.00 0.00 3.85
6111 9546 4.796231 CGGACGACGGCCTTGAGG 62.796 72.222 19.62 0.00 39.42 3.86
6121 9562 2.437897 CCTTGAGGGCTGCCTGTT 59.562 61.111 19.68 4.54 0.00 3.16
6156 9599 4.077184 CGGTGAAGTAGCCGGCCA 62.077 66.667 26.15 6.66 43.85 5.36
6184 9628 3.506096 TGTCGGAGTAGAGGCGCG 61.506 66.667 0.00 0.00 0.00 6.86
6185 9629 4.253257 GTCGGAGTAGAGGCGCGG 62.253 72.222 8.83 0.00 0.00 6.46
6369 9816 3.542676 CCCTATGTACGGGCGGCA 61.543 66.667 12.47 0.00 34.32 5.69
6653 10104 9.273137 AGTATCCCAAATATATCTCTAACAGGG 57.727 37.037 0.00 0.00 0.00 4.45
6654 10105 9.047947 GTATCCCAAATATATCTCTAACAGGGT 57.952 37.037 0.00 0.00 34.25 4.34
6655 10106 7.554959 TCCCAAATATATCTCTAACAGGGTC 57.445 40.000 0.00 0.00 34.25 4.46
6656 10107 7.313731 TCCCAAATATATCTCTAACAGGGTCT 58.686 38.462 0.00 0.00 34.25 3.85
6714 10165 4.215827 CCATAGGCTGCTGATGAGAAAATC 59.784 45.833 13.51 0.00 0.00 2.17
6715 10166 3.648507 AGGCTGCTGATGAGAAAATCT 57.351 42.857 0.00 0.00 0.00 2.40
6796 10255 2.496070 GTGGGCTGGAAAATTAAGGTCC 59.504 50.000 0.00 0.00 0.00 4.46
6810 10269 9.990868 AAAATTAAGGTCCCTACTAACATGAAT 57.009 29.630 0.00 0.00 0.00 2.57
6855 10314 3.838244 ATTCTTGTAAGATAGGCGCCA 57.162 42.857 31.54 15.56 34.49 5.69
6895 10354 1.901085 GCGAGTTCCAGAGGGTGAT 59.099 57.895 0.00 0.00 34.93 3.06
6916 10375 2.373169 TGAGATCCAAGCAGTCAACCTT 59.627 45.455 0.00 0.00 0.00 3.50
6920 10381 2.507484 TCCAAGCAGTCAACCTTCATG 58.493 47.619 0.00 0.00 0.00 3.07
6922 10383 3.087031 CCAAGCAGTCAACCTTCATGAT 58.913 45.455 0.00 0.00 0.00 2.45
6939 10400 6.698008 TCATGATCACATATGAAAACCCAC 57.302 37.500 10.38 0.00 38.69 4.61
6954 10415 1.740296 CCACGTAGTTGGGCGAAGG 60.740 63.158 0.00 0.00 41.61 3.46
6971 10440 2.347490 GTCTCGAAGGGCCAGCAA 59.653 61.111 6.18 0.00 0.00 3.91
6975 10444 3.121030 CGAAGGGCCAGCAACTCG 61.121 66.667 6.18 0.00 0.00 4.18
6976 10445 2.347490 GAAGGGCCAGCAACTCGA 59.653 61.111 6.18 0.00 0.00 4.04
6980 10449 2.045926 GGCCAGCAACTCGACCAT 60.046 61.111 0.00 0.00 0.00 3.55
6999 10468 0.976073 TGAATGGGTCCGAGACTCCC 60.976 60.000 0.00 0.00 41.41 4.30
7000 10469 1.687297 GAATGGGTCCGAGACTCCCC 61.687 65.000 8.05 8.05 40.41 4.81
7017 10494 0.331278 CCCTTACACCATGCTCCCAA 59.669 55.000 0.00 0.00 0.00 4.12
7032 10509 2.693591 CTCCCAAGAATGCAAGCATCAT 59.306 45.455 8.14 0.00 35.31 2.45
7071 10548 2.361757 CCAACCACTGTCATGCAAAGAA 59.638 45.455 0.00 0.00 0.00 2.52
7171 10648 4.746535 TTACTTAATGATCGACAGGCCA 57.253 40.909 5.01 0.00 0.00 5.36
7206 10683 6.469782 TTCTGGAGCAATTTTTGAAGTTCT 57.530 33.333 4.17 0.00 0.00 3.01
7224 10701 5.140454 AGTTCTTTATGTGAAGCCTTTGGT 58.860 37.500 0.00 0.00 0.00 3.67
7326 10803 4.690748 TGTGCACTCATGAGCTTAACTAAC 59.309 41.667 22.83 10.03 0.00 2.34
7328 10805 6.100004 GTGCACTCATGAGCTTAACTAACTA 58.900 40.000 22.83 0.00 0.00 2.24
7329 10806 6.590292 GTGCACTCATGAGCTTAACTAACTAA 59.410 38.462 22.83 0.00 0.00 2.24
7330 10807 6.590292 TGCACTCATGAGCTTAACTAACTAAC 59.410 38.462 22.83 0.00 0.00 2.34
7331 10808 6.814146 GCACTCATGAGCTTAACTAACTAACT 59.186 38.462 22.83 0.00 0.00 2.24
7332 10809 7.974501 GCACTCATGAGCTTAACTAACTAACTA 59.025 37.037 22.83 0.00 0.00 2.24
7333 10810 9.856488 CACTCATGAGCTTAACTAACTAACTAA 57.144 33.333 22.83 0.00 0.00 2.24
7334 10811 9.857957 ACTCATGAGCTTAACTAACTAACTAAC 57.142 33.333 22.83 0.00 0.00 2.34
7483 10980 3.233507 ACATCACCATTGAAACTGGCTT 58.766 40.909 0.00 0.00 37.27 4.35
7491 10988 4.038402 CCATTGAAACTGGCTTTGTCTTCT 59.962 41.667 0.00 0.00 0.00 2.85
7499 10996 2.280628 GGCTTTGTCTTCTATGTCCCG 58.719 52.381 0.00 0.00 0.00 5.14
7503 11000 1.847328 TGTCTTCTATGTCCCGCTCA 58.153 50.000 0.00 0.00 0.00 4.26
7600 11097 0.321564 ATCGGCTACAACTGCAGCAA 60.322 50.000 15.27 0.00 39.63 3.91
7655 11152 0.035056 CCTTTGGCCTCATCGTCCTT 60.035 55.000 3.32 0.00 0.00 3.36
7811 11308 1.373812 GGGAAGCACGGTACCAGTT 59.626 57.895 13.54 0.00 0.00 3.16
7960 11457 3.951680 GGGGTGTACCTGTTCAATAATGG 59.048 47.826 0.44 0.00 40.03 3.16
7970 11467 3.894427 TGTTCAATAATGGCACCAACAGT 59.106 39.130 0.00 0.00 0.00 3.55
7977 11474 0.179032 TGGCACCAACAGTAGTGTGG 60.179 55.000 3.39 10.29 36.84 4.17
8022 11519 2.463589 GATGGACTCCGCACCCAACA 62.464 60.000 0.00 0.00 33.15 3.33
8072 11569 6.643360 TGCATTTTGAATGAAGATCTTGTGTG 59.357 34.615 14.00 0.37 0.00 3.82
8093 11590 1.405105 CCAACAGTGACCACCAAAGTG 59.595 52.381 0.00 0.00 44.12 3.16
8096 11593 3.637911 ACAGTGACCACCAAAGTGTTA 57.362 42.857 0.00 0.00 42.88 2.41
8110 11607 6.434340 ACCAAAGTGTTAGATCAAAGAATCCC 59.566 38.462 0.00 0.00 0.00 3.85
8111 11608 6.434028 CCAAAGTGTTAGATCAAAGAATCCCA 59.566 38.462 0.00 0.00 0.00 4.37
8112 11609 7.039784 CCAAAGTGTTAGATCAAAGAATCCCAA 60.040 37.037 0.00 0.00 0.00 4.12
8175 11672 0.035820 TCGGGGCTGAAACATGTACC 60.036 55.000 0.00 0.00 0.00 3.34
8207 11704 8.420222 ACTATTTTGTTTTCCATTCATGACACA 58.580 29.630 0.00 0.00 0.00 3.72
8208 11705 7.718272 ATTTTGTTTTCCATTCATGACACAG 57.282 32.000 0.00 0.00 0.00 3.66
8728 13288 2.099405 GCCTTGCTACAAGCCCAATTA 58.901 47.619 1.73 0.00 41.51 1.40
8783 13343 6.156949 ACCATCTTCTTAGCCTTCACTTCATA 59.843 38.462 0.00 0.00 0.00 2.15
8791 13351 7.554118 TCTTAGCCTTCACTTCATATCCAAAAG 59.446 37.037 0.00 0.00 0.00 2.27
8797 13357 8.239998 CCTTCACTTCATATCCAAAAGACTTTC 58.760 37.037 0.00 0.00 0.00 2.62
8818 13378 8.743714 ACTTTCAACTTCTCTTCTTCAATTGTT 58.256 29.630 5.13 0.00 0.00 2.83
8827 13387 5.581605 TCTTCTTCAATTGTTGTCTTGCAC 58.418 37.500 5.13 0.00 0.00 4.57
8833 13393 1.581934 TTGTTGTCTTGCACTCCTCG 58.418 50.000 0.00 0.00 0.00 4.63
8892 13452 5.355350 CCAACTACCTTGCTTCCTTATCTTG 59.645 44.000 0.00 0.00 0.00 3.02
8941 13501 4.485024 TGCTATTATCTCTTCGACCGAC 57.515 45.455 0.00 0.00 0.00 4.79
8995 13555 3.625897 CACCCACCTCACAGGCGA 61.626 66.667 0.00 0.00 39.63 5.54
9012 13572 2.100749 GGCGACCCCTTTTTGATATTGG 59.899 50.000 0.00 0.00 0.00 3.16
9033 13593 1.751351 TGACCACCGATTAGCTCTGAG 59.249 52.381 0.00 0.00 0.00 3.35
9042 13602 4.498345 CCGATTAGCTCTGAGTACCACTTC 60.498 50.000 6.53 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.726607 GCAATGAGCTAGTAGTGATGCT 58.273 45.455 0.00 0.00 41.15 3.79
15 16 5.172934 TCCAATTTGATGAAAGCAATGAGC 58.827 37.500 0.00 0.00 44.33 4.26
16 17 7.171848 TGTTTCCAATTTGATGAAAGCAATGAG 59.828 33.333 0.00 0.00 44.33 2.90
17 18 6.990939 TGTTTCCAATTTGATGAAAGCAATGA 59.009 30.769 0.00 0.00 44.33 2.57
18 19 7.073265 GTGTTTCCAATTTGATGAAAGCAATG 58.927 34.615 0.00 0.00 44.33 2.82
19 20 6.766944 TGTGTTTCCAATTTGATGAAAGCAAT 59.233 30.769 0.00 0.00 44.33 3.56
20 21 6.111382 TGTGTTTCCAATTTGATGAAAGCAA 58.889 32.000 0.00 0.00 42.56 3.91
21 22 5.668471 TGTGTTTCCAATTTGATGAAAGCA 58.332 33.333 0.00 1.06 0.00 3.91
22 23 6.790285 ATGTGTTTCCAATTTGATGAAAGC 57.210 33.333 0.00 0.00 0.00 3.51
26 27 9.993454 TGAAAATATGTGTTTCCAATTTGATGA 57.007 25.926 0.00 0.00 34.67 2.92
32 33 9.492973 CCTTCTTGAAAATATGTGTTTCCAATT 57.507 29.630 0.00 0.00 34.67 2.32
33 34 7.603784 GCCTTCTTGAAAATATGTGTTTCCAAT 59.396 33.333 0.00 0.00 34.67 3.16
34 35 6.928492 GCCTTCTTGAAAATATGTGTTTCCAA 59.072 34.615 0.00 0.00 34.67 3.53
35 36 6.041409 TGCCTTCTTGAAAATATGTGTTTCCA 59.959 34.615 0.00 0.00 34.67 3.53
36 37 6.454795 TGCCTTCTTGAAAATATGTGTTTCC 58.545 36.000 0.00 0.00 34.67 3.13
37 38 7.945033 TTGCCTTCTTGAAAATATGTGTTTC 57.055 32.000 0.00 0.00 35.87 2.78
38 39 8.729805 TTTTGCCTTCTTGAAAATATGTGTTT 57.270 26.923 0.00 0.00 0.00 2.83
39 40 7.986889 ACTTTTGCCTTCTTGAAAATATGTGTT 59.013 29.630 0.00 0.00 0.00 3.32
40 41 7.500141 ACTTTTGCCTTCTTGAAAATATGTGT 58.500 30.769 0.00 0.00 0.00 3.72
41 42 7.652909 TGACTTTTGCCTTCTTGAAAATATGTG 59.347 33.333 0.00 0.00 0.00 3.21
42 43 7.725251 TGACTTTTGCCTTCTTGAAAATATGT 58.275 30.769 0.00 0.00 0.00 2.29
43 44 8.592105 TTGACTTTTGCCTTCTTGAAAATATG 57.408 30.769 0.00 0.00 0.00 1.78
44 45 7.874528 CCTTGACTTTTGCCTTCTTGAAAATAT 59.125 33.333 0.00 0.00 0.00 1.28
45 46 7.147742 ACCTTGACTTTTGCCTTCTTGAAAATA 60.148 33.333 0.00 0.00 0.00 1.40
78 79 5.612276 GCATGTGGTTTATTTCGTTGCAAAG 60.612 40.000 0.00 2.46 0.00 2.77
86 87 3.440173 AGTGGAGCATGTGGTTTATTTCG 59.560 43.478 0.00 0.00 0.00 3.46
128 129 8.626526 CCTGTGTGTACCTAAAACTTTGTATTT 58.373 33.333 0.00 0.00 0.00 1.40
129 130 7.776500 ACCTGTGTGTACCTAAAACTTTGTATT 59.224 33.333 0.00 0.00 0.00 1.89
130 131 7.284820 ACCTGTGTGTACCTAAAACTTTGTAT 58.715 34.615 0.00 0.00 0.00 2.29
131 132 6.652053 ACCTGTGTGTACCTAAAACTTTGTA 58.348 36.000 0.00 0.00 0.00 2.41
132 133 5.503002 ACCTGTGTGTACCTAAAACTTTGT 58.497 37.500 0.00 0.00 0.00 2.83
133 134 7.556733 TTACCTGTGTGTACCTAAAACTTTG 57.443 36.000 0.00 0.00 0.00 2.77
134 135 8.756486 ATTTACCTGTGTGTACCTAAAACTTT 57.244 30.769 0.00 0.00 0.00 2.66
135 136 9.498176 CTATTTACCTGTGTGTACCTAAAACTT 57.502 33.333 0.00 0.00 0.00 2.66
136 137 8.654094 ACTATTTACCTGTGTGTACCTAAAACT 58.346 33.333 0.00 0.00 0.00 2.66
137 138 8.837788 ACTATTTACCTGTGTGTACCTAAAAC 57.162 34.615 0.00 0.00 0.00 2.43
139 140 9.927668 GTTACTATTTACCTGTGTGTACCTAAA 57.072 33.333 0.00 0.00 0.00 1.85
140 141 9.312904 AGTTACTATTTACCTGTGTGTACCTAA 57.687 33.333 0.00 0.00 0.00 2.69
141 142 8.884124 AGTTACTATTTACCTGTGTGTACCTA 57.116 34.615 0.00 0.00 0.00 3.08
142 143 7.093596 GGAGTTACTATTTACCTGTGTGTACCT 60.094 40.741 0.00 0.00 0.00 3.08
143 144 7.038048 GGAGTTACTATTTACCTGTGTGTACC 58.962 42.308 0.00 0.00 0.00 3.34
144 145 7.758528 CAGGAGTTACTATTTACCTGTGTGTAC 59.241 40.741 8.39 0.00 39.68 2.90
145 146 7.833786 CAGGAGTTACTATTTACCTGTGTGTA 58.166 38.462 8.39 0.00 39.68 2.90
146 147 6.698380 CAGGAGTTACTATTTACCTGTGTGT 58.302 40.000 8.39 0.00 39.68 3.72
175 176 4.882842 TCTGTATGGTTGTGCTCTGTAA 57.117 40.909 0.00 0.00 0.00 2.41
177 178 3.603532 CATCTGTATGGTTGTGCTCTGT 58.396 45.455 0.00 0.00 0.00 3.41
185 186 8.929827 TTTCATTTAATGCATCTGTATGGTTG 57.070 30.769 0.00 0.00 33.38 3.77
276 277 8.983307 TCCAAAACAACTAATACAACGTTTTT 57.017 26.923 0.00 0.00 35.11 1.94
277 278 8.983307 TTCCAAAACAACTAATACAACGTTTT 57.017 26.923 0.00 0.00 37.11 2.43
278 279 8.862074 GTTTCCAAAACAACTAATACAACGTTT 58.138 29.630 0.00 0.00 0.00 3.60
279 280 7.488792 GGTTTCCAAAACAACTAATACAACGTT 59.511 33.333 0.00 0.00 0.00 3.99
280 281 6.974048 GGTTTCCAAAACAACTAATACAACGT 59.026 34.615 5.07 0.00 0.00 3.99
281 282 7.197703 AGGTTTCCAAAACAACTAATACAACG 58.802 34.615 5.07 0.00 0.00 4.10
282 283 8.192110 TGAGGTTTCCAAAACAACTAATACAAC 58.808 33.333 5.07 0.00 0.00 3.32
283 284 8.294954 TGAGGTTTCCAAAACAACTAATACAA 57.705 30.769 5.07 0.00 0.00 2.41
284 285 7.883391 TGAGGTTTCCAAAACAACTAATACA 57.117 32.000 5.07 0.00 0.00 2.29
285 286 9.758651 AAATGAGGTTTCCAAAACAACTAATAC 57.241 29.630 5.07 0.00 0.00 1.89
286 287 9.974980 GAAATGAGGTTTCCAAAACAACTAATA 57.025 29.630 5.07 0.00 40.27 0.98
287 288 7.651704 CGAAATGAGGTTTCCAAAACAACTAAT 59.348 33.333 5.07 0.00 42.63 1.73
292 293 5.331876 ACGAAATGAGGTTTCCAAAACAA 57.668 34.783 5.07 0.00 42.63 2.83
296 297 6.398918 TCAAAAACGAAATGAGGTTTCCAAA 58.601 32.000 0.00 0.00 42.63 3.28
314 315 1.272212 GAAGGGCGCAAGGATCAAAAA 59.728 47.619 10.83 0.00 38.28 1.94
319 320 1.169034 GGATGAAGGGCGCAAGGATC 61.169 60.000 10.83 3.37 38.28 3.36
320 321 1.152881 GGATGAAGGGCGCAAGGAT 60.153 57.895 10.83 0.00 38.28 3.24
322 323 3.204827 CGGATGAAGGGCGCAAGG 61.205 66.667 10.83 0.00 38.28 3.61
324 325 2.033448 AACGGATGAAGGGCGCAA 59.967 55.556 10.83 0.00 0.00 4.85
325 326 2.173758 TACAACGGATGAAGGGCGCA 62.174 55.000 10.83 0.00 0.00 6.09
326 327 1.429148 CTACAACGGATGAAGGGCGC 61.429 60.000 0.00 0.00 0.00 6.53
327 328 0.108329 ACTACAACGGATGAAGGGCG 60.108 55.000 0.00 0.00 0.00 6.13
328 329 1.737793 CAACTACAACGGATGAAGGGC 59.262 52.381 0.00 0.00 0.00 5.19
329 330 3.053831 ACAACTACAACGGATGAAGGG 57.946 47.619 0.00 0.00 0.00 3.95
332 333 5.106869 GCATTGTACAACTACAACGGATGAA 60.107 40.000 11.22 0.00 44.03 2.57
333 334 4.390603 GCATTGTACAACTACAACGGATGA 59.609 41.667 11.22 0.00 44.03 2.92
334 335 4.153296 TGCATTGTACAACTACAACGGATG 59.847 41.667 11.22 2.32 44.03 3.51
335 336 4.320023 TGCATTGTACAACTACAACGGAT 58.680 39.130 11.22 0.00 44.03 4.18
336 337 3.729966 TGCATTGTACAACTACAACGGA 58.270 40.909 11.22 0.00 44.03 4.69
337 338 4.475763 TTGCATTGTACAACTACAACGG 57.524 40.909 11.22 0.00 44.03 4.44
371 372 9.822185 GAGCTGTTCATGGGATTAAATTAATTT 57.178 29.630 17.18 17.18 0.00 1.82
374 375 7.068593 CCAGAGCTGTTCATGGGATTAAATTAA 59.931 37.037 0.00 0.00 0.00 1.40
376 377 5.361857 CCAGAGCTGTTCATGGGATTAAATT 59.638 40.000 0.00 0.00 0.00 1.82
378 379 4.018506 TCCAGAGCTGTTCATGGGATTAAA 60.019 41.667 0.00 0.00 33.45 1.52
398 400 0.252881 ATTGGTCTCCTCTGGCTCCA 60.253 55.000 0.00 0.00 0.00 3.86
400 402 0.467804 GGATTGGTCTCCTCTGGCTC 59.532 60.000 0.00 0.00 32.18 4.70
431 433 6.096846 GGCATGTGTTTATGTTTCCCTAAGAT 59.903 38.462 0.00 0.00 0.00 2.40
433 435 5.184864 TGGCATGTGTTTATGTTTCCCTAAG 59.815 40.000 0.00 0.00 0.00 2.18
436 438 3.258123 GTGGCATGTGTTTATGTTTCCCT 59.742 43.478 0.00 0.00 0.00 4.20
438 440 4.250116 TGTGGCATGTGTTTATGTTTCC 57.750 40.909 0.00 0.00 0.00 3.13
439 441 5.468592 TGATGTGGCATGTGTTTATGTTTC 58.531 37.500 0.00 0.00 0.00 2.78
441 443 5.185442 TGATGATGTGGCATGTGTTTATGTT 59.815 36.000 0.00 0.00 0.00 2.71
442 444 4.705991 TGATGATGTGGCATGTGTTTATGT 59.294 37.500 0.00 0.00 0.00 2.29
443 445 5.038683 GTGATGATGTGGCATGTGTTTATG 58.961 41.667 0.00 0.00 0.00 1.90
444 446 4.705991 TGTGATGATGTGGCATGTGTTTAT 59.294 37.500 0.00 0.00 0.00 1.40
445 447 4.077822 TGTGATGATGTGGCATGTGTTTA 58.922 39.130 0.00 0.00 0.00 2.01
446 448 2.892215 TGTGATGATGTGGCATGTGTTT 59.108 40.909 0.00 0.00 0.00 2.83
447 449 2.490509 CTGTGATGATGTGGCATGTGTT 59.509 45.455 0.00 0.00 0.00 3.32
449 451 1.404035 CCTGTGATGATGTGGCATGTG 59.596 52.381 0.00 0.00 0.00 3.21
450 452 1.758936 CCTGTGATGATGTGGCATGT 58.241 50.000 0.00 0.00 0.00 3.21
451 453 0.384309 GCCTGTGATGATGTGGCATG 59.616 55.000 0.00 0.00 42.79 4.06
453 455 1.378911 GGCCTGTGATGATGTGGCA 60.379 57.895 0.00 0.00 44.85 4.92
455 457 1.033746 GTGGGCCTGTGATGATGTGG 61.034 60.000 4.53 0.00 0.00 4.17
456 458 1.033746 GGTGGGCCTGTGATGATGTG 61.034 60.000 4.53 0.00 0.00 3.21
460 462 1.714011 TTGTGGTGGGCCTGTGATGA 61.714 55.000 4.53 0.00 35.27 2.92
461 463 0.827089 TTTGTGGTGGGCCTGTGATG 60.827 55.000 4.53 0.00 35.27 3.07
462 464 0.105760 TTTTGTGGTGGGCCTGTGAT 60.106 50.000 4.53 0.00 35.27 3.06
466 468 1.004679 GCATTTTGTGGTGGGCCTG 60.005 57.895 4.53 0.00 35.27 4.85
467 469 1.459158 TGCATTTTGTGGTGGGCCT 60.459 52.632 4.53 0.00 35.27 5.19
470 472 1.664333 GCGTGCATTTTGTGGTGGG 60.664 57.895 0.00 0.00 0.00 4.61
471 473 0.529337 TTGCGTGCATTTTGTGGTGG 60.529 50.000 0.00 0.00 0.00 4.61
472 474 1.005137 GTTTGCGTGCATTTTGTGGTG 60.005 47.619 0.00 0.00 0.00 4.17
473 475 1.134848 AGTTTGCGTGCATTTTGTGGT 60.135 42.857 0.00 0.00 0.00 4.16
474 476 1.569708 AGTTTGCGTGCATTTTGTGG 58.430 45.000 0.00 0.00 0.00 4.17
475 477 3.371168 AGTAGTTTGCGTGCATTTTGTG 58.629 40.909 0.00 0.00 0.00 3.33
477 479 4.290155 AGAAGTAGTTTGCGTGCATTTTG 58.710 39.130 0.00 0.00 0.00 2.44
478 480 4.036262 TGAGAAGTAGTTTGCGTGCATTTT 59.964 37.500 0.00 0.00 0.00 1.82
479 481 3.563808 TGAGAAGTAGTTTGCGTGCATTT 59.436 39.130 0.00 0.00 0.00 2.32
480 482 3.058914 GTGAGAAGTAGTTTGCGTGCATT 60.059 43.478 0.00 0.00 0.00 3.56
481 483 2.480419 GTGAGAAGTAGTTTGCGTGCAT 59.520 45.455 0.00 0.00 0.00 3.96
482 484 1.864711 GTGAGAAGTAGTTTGCGTGCA 59.135 47.619 0.00 0.00 0.00 4.57
483 485 2.096713 CAGTGAGAAGTAGTTTGCGTGC 60.097 50.000 0.00 0.00 0.00 5.34
484 486 3.123804 ACAGTGAGAAGTAGTTTGCGTG 58.876 45.455 0.00 0.00 0.00 5.34
485 487 3.454371 ACAGTGAGAAGTAGTTTGCGT 57.546 42.857 0.00 0.00 0.00 5.24
487 489 6.479001 TCAACTAACAGTGAGAAGTAGTTTGC 59.521 38.462 0.00 0.00 0.00 3.68
488 490 8.594881 ATCAACTAACAGTGAGAAGTAGTTTG 57.405 34.615 0.00 0.00 0.00 2.93
491 493 6.071278 GGGATCAACTAACAGTGAGAAGTAGT 60.071 42.308 0.00 0.00 0.00 2.73
492 494 6.334202 GGGATCAACTAACAGTGAGAAGTAG 58.666 44.000 0.00 0.00 0.00 2.57
493 495 5.187186 GGGGATCAACTAACAGTGAGAAGTA 59.813 44.000 0.00 0.00 0.00 2.24
494 496 4.020128 GGGGATCAACTAACAGTGAGAAGT 60.020 45.833 0.00 0.00 0.00 3.01
495 497 4.508662 GGGGATCAACTAACAGTGAGAAG 58.491 47.826 0.00 0.00 0.00 2.85
496 498 3.056107 CGGGGATCAACTAACAGTGAGAA 60.056 47.826 0.00 0.00 0.00 2.87
497 499 2.496070 CGGGGATCAACTAACAGTGAGA 59.504 50.000 0.00 0.00 0.00 3.27
498 500 2.893637 CGGGGATCAACTAACAGTGAG 58.106 52.381 0.00 0.00 0.00 3.51
500 502 1.369625 GCGGGGATCAACTAACAGTG 58.630 55.000 0.00 0.00 0.00 3.66
501 503 0.252197 GGCGGGGATCAACTAACAGT 59.748 55.000 0.00 0.00 0.00 3.55
504 506 0.106149 ATCGGCGGGGATCAACTAAC 59.894 55.000 7.21 0.00 0.00 2.34
505 507 0.834612 AATCGGCGGGGATCAACTAA 59.165 50.000 7.21 0.00 0.00 2.24
506 508 0.391597 GAATCGGCGGGGATCAACTA 59.608 55.000 7.21 0.00 0.00 2.24
508 510 0.391597 TAGAATCGGCGGGGATCAAC 59.608 55.000 7.21 0.00 0.00 3.18
510 512 1.348064 AATAGAATCGGCGGGGATCA 58.652 50.000 7.21 0.00 0.00 2.92
511 513 2.474410 AAATAGAATCGGCGGGGATC 57.526 50.000 7.21 0.26 0.00 3.36
513 515 4.202377 TGAAATAAATAGAATCGGCGGGGA 60.202 41.667 7.21 0.00 0.00 4.81
514 516 4.069304 TGAAATAAATAGAATCGGCGGGG 58.931 43.478 7.21 0.00 0.00 5.73
515 517 5.008217 TGTTGAAATAAATAGAATCGGCGGG 59.992 40.000 7.21 0.00 0.00 6.13
516 518 6.055231 TGTTGAAATAAATAGAATCGGCGG 57.945 37.500 7.21 0.00 0.00 6.13
517 519 6.086765 GCATGTTGAAATAAATAGAATCGGCG 59.913 38.462 0.00 0.00 0.00 6.46
518 520 6.363357 GGCATGTTGAAATAAATAGAATCGGC 59.637 38.462 0.00 0.00 0.00 5.54
519 521 7.379529 GTGGCATGTTGAAATAAATAGAATCGG 59.620 37.037 0.00 0.00 0.00 4.18
521 523 7.379529 CGGTGGCATGTTGAAATAAATAGAATC 59.620 37.037 0.00 0.00 0.00 2.52
522 524 7.202526 CGGTGGCATGTTGAAATAAATAGAAT 58.797 34.615 0.00 0.00 0.00 2.40
523 525 6.559810 CGGTGGCATGTTGAAATAAATAGAA 58.440 36.000 0.00 0.00 0.00 2.10
524 526 5.449862 GCGGTGGCATGTTGAAATAAATAGA 60.450 40.000 0.00 0.00 39.62 1.98
525 527 4.739716 GCGGTGGCATGTTGAAATAAATAG 59.260 41.667 0.00 0.00 39.62 1.73
526 528 4.400884 AGCGGTGGCATGTTGAAATAAATA 59.599 37.500 0.00 0.00 43.41 1.40
528 530 2.560542 AGCGGTGGCATGTTGAAATAAA 59.439 40.909 0.00 0.00 43.41 1.40
529 531 2.166829 AGCGGTGGCATGTTGAAATAA 58.833 42.857 0.00 0.00 43.41 1.40
530 532 1.832883 AGCGGTGGCATGTTGAAATA 58.167 45.000 0.00 0.00 43.41 1.40
531 533 1.832883 TAGCGGTGGCATGTTGAAAT 58.167 45.000 0.00 0.00 43.41 2.17
532 534 1.610363 TTAGCGGTGGCATGTTGAAA 58.390 45.000 0.00 0.00 43.41 2.69
533 535 1.832883 ATTAGCGGTGGCATGTTGAA 58.167 45.000 0.00 0.00 43.41 2.69
534 536 2.700722 TATTAGCGGTGGCATGTTGA 57.299 45.000 0.00 0.00 43.41 3.18
535 537 3.988379 ATTATTAGCGGTGGCATGTTG 57.012 42.857 0.00 0.00 43.41 3.33
536 538 6.446318 CAAATATTATTAGCGGTGGCATGTT 58.554 36.000 0.00 0.00 43.41 2.71
538 540 4.858692 GCAAATATTATTAGCGGTGGCATG 59.141 41.667 0.00 0.00 43.41 4.06
539 541 4.766891 AGCAAATATTATTAGCGGTGGCAT 59.233 37.500 0.00 0.00 43.41 4.40
570 2452 8.095937 AGCAACAAAGTATACCAAACTCTAAC 57.904 34.615 0.00 0.00 0.00 2.34
579 2461 6.526526 TGTACTTGAGCAACAAAGTATACCA 58.473 36.000 0.00 0.00 38.08 3.25
580 2462 7.611213 ATGTACTTGAGCAACAAAGTATACC 57.389 36.000 0.00 0.00 38.08 2.73
590 2472 9.922305 GATATTAGTTGAATGTACTTGAGCAAC 57.078 33.333 0.00 0.00 36.72 4.17
622 2504 3.303791 GCTCACCAAAGTTAAGTGTTCCG 60.304 47.826 5.40 0.00 33.21 4.30
624 2506 4.893424 TGCTCACCAAAGTTAAGTGTTC 57.107 40.909 5.40 1.09 33.21 3.18
632 2514 5.133221 ACAGTAGAAATGCTCACCAAAGTT 58.867 37.500 0.00 0.00 0.00 2.66
634 2516 5.455392 CAACAGTAGAAATGCTCACCAAAG 58.545 41.667 0.00 0.00 0.00 2.77
640 2522 4.350368 TGTCCAACAGTAGAAATGCTCA 57.650 40.909 0.00 0.00 0.00 4.26
692 2580 8.839343 TGCATGTGAATATCAAGTAATGTTAGG 58.161 33.333 0.00 0.00 0.00 2.69
727 2615 0.958822 AAATTTCTGGGTGTCCACGC 59.041 50.000 7.47 7.47 43.59 5.34
761 2649 1.262950 TCACAAAGTTGATCAACGGCG 59.737 47.619 28.18 22.18 45.50 6.46
765 2653 4.445385 GTGCCATTCACAAAGTTGATCAAC 59.555 41.667 27.69 27.69 44.98 3.18
814 2702 1.473677 TCAATGCTCGGGATTTTGCTG 59.526 47.619 0.00 0.00 0.00 4.41
819 2707 2.514458 AACCTCAATGCTCGGGATTT 57.486 45.000 0.00 0.00 0.00 2.17
822 2710 3.709653 ACTATTAACCTCAATGCTCGGGA 59.290 43.478 0.00 0.00 0.00 5.14
829 2717 8.352942 GGATAGCCAAAACTATTAACCTCAATG 58.647 37.037 0.00 0.00 32.95 2.82
835 2723 5.277828 CGCAGGATAGCCAAAACTATTAACC 60.278 44.000 0.00 0.00 32.95 2.85
849 2737 2.341911 GAGGGAGCGCAGGATAGC 59.658 66.667 11.47 0.00 0.00 2.97
858 2746 1.142748 CTGCTAACAGGAGGGAGCG 59.857 63.158 0.00 0.00 40.48 5.03
899 2788 2.422127 TGTTTAGAAATAAGCCCGCTGC 59.578 45.455 0.00 0.00 41.71 5.25
906 2795 8.889000 CAACGTTAACAGTGTTTAGAAATAAGC 58.111 33.333 14.90 0.00 0.00 3.09
929 2818 6.087687 GCGGATTTTCACTTTAGCTTTACAAC 59.912 38.462 0.00 0.00 0.00 3.32
958 2847 1.953559 TTTTATAGAGCTGGGCTGCG 58.046 50.000 0.00 0.00 39.88 5.18
975 3182 0.663153 GAGTGAGCCAGCACGTTTTT 59.337 50.000 0.00 0.00 43.42 1.94
979 3186 2.029666 GTGAGTGAGCCAGCACGT 59.970 61.111 0.00 0.00 43.42 4.49
982 3189 0.689055 ATGAAGTGAGTGAGCCAGCA 59.311 50.000 0.00 0.00 0.00 4.41
994 3201 2.286872 GGACTCTGGATGCATGAAGTG 58.713 52.381 2.46 4.85 0.00 3.16
1112 3319 2.225791 CTCATGGGCGTCCTCGTTGA 62.226 60.000 7.97 4.51 39.49 3.18
1134 3344 4.519437 CTCATGCCGCCGCTCTGA 62.519 66.667 0.00 1.27 35.36 3.27
1258 3468 3.554692 CTCGTCGGCGCCATTGAC 61.555 66.667 28.98 23.50 38.14 3.18
1259 3469 4.812476 CCTCGTCGGCGCCATTGA 62.812 66.667 28.98 18.67 38.14 2.57
1260 3470 4.812476 TCCTCGTCGGCGCCATTG 62.812 66.667 28.98 15.07 38.14 2.82
1261 3471 3.849951 ATCCTCGTCGGCGCCATT 61.850 61.111 28.98 0.00 38.14 3.16
1262 3472 4.592192 CATCCTCGTCGGCGCCAT 62.592 66.667 28.98 7.39 38.14 4.40
1327 3540 1.674322 CGGGCTGGAAATGGAACGT 60.674 57.895 0.00 0.00 0.00 3.99
1344 3557 1.923204 CCGCTCATGAAGTTCTTCTCG 59.077 52.381 12.74 1.95 0.00 4.04
1390 3603 3.581755 TCTGAAAACGAATCGTCCGAAT 58.418 40.909 9.32 0.00 39.99 3.34
1392 3605 2.710220 TCTGAAAACGAATCGTCCGA 57.290 45.000 9.32 0.00 39.99 4.55
1395 3608 7.007456 GGAATTTGAATCTGAAAACGAATCGTC 59.993 37.037 9.32 0.00 39.99 4.20
1396 3609 6.801862 GGAATTTGAATCTGAAAACGAATCGT 59.198 34.615 0.96 0.96 43.97 3.73
1397 3610 6.022251 CGGAATTTGAATCTGAAAACGAATCG 60.022 38.462 0.00 0.00 0.00 3.34
1398 3611 6.801862 ACGGAATTTGAATCTGAAAACGAATC 59.198 34.615 0.00 0.00 0.00 2.52
1399 3612 6.677913 ACGGAATTTGAATCTGAAAACGAAT 58.322 32.000 0.00 0.00 0.00 3.34
1400 3613 6.067263 ACGGAATTTGAATCTGAAAACGAA 57.933 33.333 0.00 0.00 0.00 3.85
1401 3614 5.682943 ACGGAATTTGAATCTGAAAACGA 57.317 34.783 0.00 0.00 0.00 3.85
1430 3643 1.363744 GATCAAACCACGCCAGAGAG 58.636 55.000 0.00 0.00 0.00 3.20
1539 3770 1.633774 ATCTCCGTTCTGGTCAGTGT 58.366 50.000 0.00 0.00 39.52 3.55
1547 3778 2.283298 CCACATGGAATCTCCGTTCTG 58.717 52.381 0.00 0.00 40.17 3.02
1548 3779 1.407437 GCCACATGGAATCTCCGTTCT 60.407 52.381 0.87 0.00 40.17 3.01
1549 3780 1.017387 GCCACATGGAATCTCCGTTC 58.983 55.000 0.87 0.00 40.17 3.95
1563 3794 5.336134 GCTGCAATCAATCATATATGCCACA 60.336 40.000 7.92 0.00 33.01 4.17
1751 4094 0.316841 GATTTTTGGCAGCGTTGGGA 59.683 50.000 0.16 0.00 0.00 4.37
2047 4861 0.816825 TCGTCCGCGGCTAGATTACT 60.817 55.000 23.51 0.00 38.89 2.24
2107 4936 1.793134 AAGACGACGAAGGCGAGTGT 61.793 55.000 0.00 0.00 41.64 3.55
2366 5223 7.386059 TGAGCAGATACTACACAAGATTTTCA 58.614 34.615 0.00 0.00 0.00 2.69
2375 5232 3.638627 CCCAGATGAGCAGATACTACACA 59.361 47.826 0.00 0.00 0.00 3.72
2476 5333 9.016438 ACTTAACAAAGTGAGTTAGGACAAAAA 57.984 29.630 0.00 0.00 34.03 1.94
2478 5335 8.570068 AACTTAACAAAGTGAGTTAGGACAAA 57.430 30.769 0.00 0.00 34.03 2.83
2480 5337 9.669887 TTAAACTTAACAAAGTGAGTTAGGACA 57.330 29.630 0.00 0.00 34.03 4.02
2481 5338 9.926751 GTTAAACTTAACAAAGTGAGTTAGGAC 57.073 33.333 7.35 0.00 41.93 3.85
2522 5383 0.941542 GGTACTGCAGCGTTGTTGAA 59.058 50.000 15.27 0.00 0.00 2.69
2529 5390 0.319900 CTCACTTGGTACTGCAGCGT 60.320 55.000 15.27 0.00 0.00 5.07
2546 5407 3.674682 GCGCTGGATCCACTGATATACTC 60.675 52.174 11.44 0.00 0.00 2.59
2595 5457 5.106475 TGTTAGCTTACAAAAATACAGGGCG 60.106 40.000 2.43 0.00 0.00 6.13
2612 5474 8.088365 GGTCAAATAATTTCAACCTTGTTAGCT 58.912 33.333 0.00 0.00 0.00 3.32
2613 5475 7.061789 CGGTCAAATAATTTCAACCTTGTTAGC 59.938 37.037 0.00 0.00 0.00 3.09
2614 5476 8.293867 TCGGTCAAATAATTTCAACCTTGTTAG 58.706 33.333 0.00 0.00 0.00 2.34
2615 5477 8.167605 TCGGTCAAATAATTTCAACCTTGTTA 57.832 30.769 0.00 0.00 0.00 2.41
2620 5482 7.392113 TGTGTATCGGTCAAATAATTTCAACCT 59.608 33.333 0.00 0.00 0.00 3.50
2639 5501 7.416326 GGGTGAGGTTCCAAAAATATGTGTATC 60.416 40.741 0.00 0.00 0.00 2.24
2645 5507 5.736951 TTGGGTGAGGTTCCAAAAATATG 57.263 39.130 0.00 0.00 39.77 1.78
2653 5515 1.227249 TTCCTTTGGGTGAGGTTCCA 58.773 50.000 0.00 0.00 35.71 3.53
2654 5516 2.171003 CATTCCTTTGGGTGAGGTTCC 58.829 52.381 0.00 0.00 35.71 3.62
2688 5550 4.797471 CATGGTTTCAGCTTTCATTTCGA 58.203 39.130 0.00 0.00 0.00 3.71
2693 5555 4.546829 AATGCATGGTTTCAGCTTTCAT 57.453 36.364 0.00 0.00 0.00 2.57
2701 5563 7.417342 GGGTAGCTATAAAAATGCATGGTTTCA 60.417 37.037 0.00 0.00 0.00 2.69
2747 5609 5.352569 CCTCATGTTTAGATCACCAACTCAC 59.647 44.000 0.00 0.00 0.00 3.51
2772 5634 0.034670 CCTCCTTGCCCTTCTTGAGG 60.035 60.000 0.00 0.00 45.86 3.86
2773 5635 0.987294 TCCTCCTTGCCCTTCTTGAG 59.013 55.000 0.00 0.00 0.00 3.02
2779 5642 1.376649 AATCAGTCCTCCTTGCCCTT 58.623 50.000 0.00 0.00 0.00 3.95
2787 5650 5.678583 TCAGATCAATCAAATCAGTCCTCC 58.321 41.667 0.00 0.00 0.00 4.30
2788 5651 7.804843 AATCAGATCAATCAAATCAGTCCTC 57.195 36.000 0.00 0.00 0.00 3.71
2830 5693 8.791514 TGGTACCATCCACGGTAGTATACCAA 62.792 46.154 11.60 0.00 46.49 3.67
2944 5807 2.161855 CACAGCTAATGGAAGTTGGCA 58.838 47.619 0.00 0.00 37.96 4.92
2952 5815 1.908619 TCAGGAAGCACAGCTAATGGA 59.091 47.619 0.00 0.00 38.25 3.41
2958 5821 1.374190 CTGGTCAGGAAGCACAGCT 59.626 57.895 0.00 0.00 42.56 4.24
3510 6385 3.721706 GCCTCAGGGTCCACTGGG 61.722 72.222 0.00 0.00 38.72 4.45
3522 6397 2.285368 ATCCCCAAGTCGGCCTCA 60.285 61.111 0.00 0.00 0.00 3.86
3699 6574 7.321745 TCATAGGCTATCGATGTGTAGTATG 57.678 40.000 8.54 7.83 31.59 2.39
3706 6581 6.791887 AAACAATCATAGGCTATCGATGTG 57.208 37.500 8.54 12.74 31.59 3.21
3718 6593 7.528516 CGATGCAAGATCGTAAAACAATCATAG 59.471 37.037 0.00 0.00 36.84 2.23
3744 6626 7.375834 ACATGCATAATGAACCAATGATGATC 58.624 34.615 0.00 0.00 38.72 2.92
3775 7134 5.237344 AGGCAATGCGTTGATCTATCTAAAC 59.763 40.000 22.81 0.00 37.53 2.01
3807 7166 4.623647 GCATTGATTTAACAACCCCAGCAT 60.624 41.667 0.00 0.00 32.50 3.79
3813 7172 5.630061 GCAATTGCATTGATTTAACAACCC 58.370 37.500 25.36 0.00 42.83 4.11
3839 7198 2.420022 CCGGAGAAGAACGATTGCAAAT 59.580 45.455 1.71 0.00 0.00 2.32
3840 7199 1.804151 CCGGAGAAGAACGATTGCAAA 59.196 47.619 1.71 0.00 0.00 3.68
3847 7206 1.179152 TGCATACCGGAGAAGAACGA 58.821 50.000 9.46 0.00 0.00 3.85
3849 7208 1.659098 CGTTGCATACCGGAGAAGAAC 59.341 52.381 9.46 4.36 0.00 3.01
3869 7228 5.708948 TCAACATTTTAAGCATGCAGGTAC 58.291 37.500 21.98 0.00 0.00 3.34
3873 7232 3.615496 GCCTCAACATTTTAAGCATGCAG 59.385 43.478 21.98 3.26 0.00 4.41
3883 7242 1.276989 CCATGCAGGCCTCAACATTTT 59.723 47.619 0.00 0.00 0.00 1.82
3912 7271 7.327975 CCTACATATAGGTCCATATTTCGCAA 58.672 38.462 0.00 0.00 42.95 4.85
4069 7431 3.695060 ACTCAATATATACTCGCCCTCGG 59.305 47.826 0.00 0.00 36.13 4.63
4425 7792 3.077519 GCACGGCTACCTCGACCAT 62.078 63.158 0.00 0.00 0.00 3.55
4720 8096 4.953010 TCCACGACGTGTCCCCGA 62.953 66.667 25.18 12.79 0.00 5.14
4769 8147 0.324368 AGGTCCCAGTCTACGCATGA 60.324 55.000 0.00 0.00 0.00 3.07
4876 8258 3.993376 GACAACCGCGGGCGACATA 62.993 63.158 31.76 0.00 42.83 2.29
5814 9217 2.142357 CTGCTCCGTTGGTCACTCGA 62.142 60.000 0.00 0.00 0.00 4.04
6022 9440 1.068250 GGAGACCTGCATCGCCTAC 59.932 63.158 3.08 0.00 35.78 3.18
6023 9441 3.538614 GGAGACCTGCATCGCCTA 58.461 61.111 3.08 0.00 35.78 3.93
6106 9541 2.598394 GCAACAGGCAGCCCTCAA 60.598 61.111 8.22 0.00 40.33 3.02
6142 9585 2.978824 GACTGGCCGGCTACTTCA 59.021 61.111 28.56 14.56 0.00 3.02
6144 9587 4.452733 GCGACTGGCCGGCTACTT 62.453 66.667 28.56 7.78 34.80 2.24
6167 9610 3.506096 CGCGCCTCTACTCCGACA 61.506 66.667 0.00 0.00 0.00 4.35
6655 10106 9.855021 AACCGGATGTTATTTCTTTGAATAAAG 57.145 29.630 9.46 0.00 39.06 1.85
6677 10128 3.131396 GCCTATGGACAGATTGTAACCG 58.869 50.000 0.00 0.00 0.00 4.44
6738 10190 3.315470 TGCTTGTACGCTGGAGAGTATAG 59.685 47.826 0.00 0.00 33.16 1.31
6764 10223 2.360350 AGCCCACCAATGTGCTCG 60.360 61.111 0.00 0.00 41.35 5.03
6781 10240 7.332433 TGTTAGTAGGGACCTTAATTTTCCA 57.668 36.000 0.00 0.00 0.00 3.53
6796 10255 9.391006 TGCCTAGTTTTTATTCATGTTAGTAGG 57.609 33.333 0.00 0.00 32.73 3.18
6810 10269 7.966339 TGGAGACTATAGTGCCTAGTTTTTA 57.034 36.000 10.90 0.00 29.67 1.52
6855 10314 3.989167 CGCCACAATTCATGTTTGATTGT 59.011 39.130 15.03 12.93 41.46 2.71
6895 10354 1.980765 AGGTTGACTGCTTGGATCTCA 59.019 47.619 0.00 0.00 0.00 3.27
6916 10375 5.296531 CGTGGGTTTTCATATGTGATCATGA 59.703 40.000 0.00 0.00 35.70 3.07
6920 10381 5.815740 ACTACGTGGGTTTTCATATGTGATC 59.184 40.000 3.26 0.00 33.56 2.92
6922 10383 5.155278 ACTACGTGGGTTTTCATATGTGA 57.845 39.130 3.26 0.00 0.00 3.58
6939 10400 0.458025 GAGACCTTCGCCCAACTACG 60.458 60.000 0.00 0.00 0.00 3.51
6954 10415 2.035442 GTTGCTGGCCCTTCGAGAC 61.035 63.158 0.00 0.00 0.00 3.36
6976 10445 0.541863 GTCTCGGACCCATTCATGGT 59.458 55.000 5.09 0.00 46.65 3.55
6980 10449 0.976073 GGGAGTCTCGGACCCATTCA 60.976 60.000 0.00 0.00 42.81 2.57
6999 10468 1.281867 TCTTGGGAGCATGGTGTAAGG 59.718 52.381 0.00 0.00 0.00 2.69
7000 10469 2.787473 TCTTGGGAGCATGGTGTAAG 57.213 50.000 0.00 4.17 0.00 2.34
7017 10494 6.118170 ACTAGTACAATGATGCTTGCATTCT 58.882 36.000 9.59 0.00 33.93 2.40
7032 10509 8.434392 AGTGGTTGGAAAAGAATACTAGTACAA 58.566 33.333 4.31 0.00 0.00 2.41
7151 10628 4.262463 GGATGGCCTGTCGATCATTAAGTA 60.262 45.833 3.32 0.00 32.28 2.24
7171 10648 2.019984 GCTCCAGAAATTCAAGCGGAT 58.980 47.619 0.00 0.00 0.00 4.18
7206 10683 4.730966 TGGTACCAAAGGCTTCACATAAA 58.269 39.130 13.60 0.00 0.00 1.40
7326 10803 7.215194 CACGCACGTAGTTAGTTAGTTAGTTAG 59.785 40.741 0.00 0.00 41.61 2.34
7328 10805 5.853282 CACGCACGTAGTTAGTTAGTTAGTT 59.147 40.000 0.00 0.00 41.61 2.24
7329 10806 5.385617 CACGCACGTAGTTAGTTAGTTAGT 58.614 41.667 0.00 0.00 41.61 2.24
7330 10807 4.261581 GCACGCACGTAGTTAGTTAGTTAG 59.738 45.833 0.00 0.00 41.61 2.34
7331 10808 4.158384 GCACGCACGTAGTTAGTTAGTTA 58.842 43.478 0.00 0.00 41.61 2.24
7332 10809 2.982470 GCACGCACGTAGTTAGTTAGTT 59.018 45.455 0.00 0.00 41.61 2.24
7333 10810 2.030893 TGCACGCACGTAGTTAGTTAGT 60.031 45.455 0.00 0.00 41.61 2.24
7334 10811 2.587956 TGCACGCACGTAGTTAGTTAG 58.412 47.619 0.00 0.00 41.61 2.34
7336 10813 1.269413 ACTGCACGCACGTAGTTAGTT 60.269 47.619 0.00 0.00 41.61 2.24
7338 10815 0.982673 GACTGCACGCACGTAGTTAG 59.017 55.000 0.00 0.00 41.61 2.34
7483 10980 2.166459 CTGAGCGGGACATAGAAGACAA 59.834 50.000 0.00 0.00 0.00 3.18
7491 10988 1.522092 CTTGGCTGAGCGGGACATA 59.478 57.895 0.00 0.00 0.00 2.29
7503 11000 0.610174 TCGAGTTGATCAGCTTGGCT 59.390 50.000 22.50 4.76 40.77 4.75
7655 11152 1.071299 ACAACAGTCGCTGGATGCA 59.929 52.632 10.80 0.00 43.06 3.96
7668 11165 1.227527 CCGTCTGCTCACCACAACA 60.228 57.895 0.00 0.00 0.00 3.33
7811 11308 2.166459 CGACAAAGCCTCACCATCTAGA 59.834 50.000 0.00 0.00 0.00 2.43
7893 11390 1.068588 CGGATACACCCGTGATGTCAT 59.931 52.381 0.96 0.00 44.23 3.06
7955 11452 3.407698 CACACTACTGTTGGTGCCATTA 58.592 45.455 11.60 0.00 36.99 1.90
7960 11457 0.944386 CACCACACTACTGTTGGTGC 59.056 55.000 14.46 0.00 40.04 5.01
7970 11467 0.034337 GTCTTTCCGCCACCACACTA 59.966 55.000 0.00 0.00 0.00 2.74
7977 11474 0.878961 ACGACAAGTCTTTCCGCCAC 60.879 55.000 0.00 0.00 0.00 5.01
8072 11569 0.385390 CTTTGGTGGTCACTGTTGGC 59.615 55.000 0.93 0.00 0.00 4.52
8093 11590 6.442513 CCTGTTGGGATTCTTTGATCTAAC 57.557 41.667 0.00 0.00 37.23 2.34
8175 11672 8.830201 TGAATGGAAAACAAAATAGTCCAATG 57.170 30.769 0.00 0.00 41.54 2.82
8681 12178 4.215399 TGAAGTATTTGGAGTTGGCGAAAG 59.785 41.667 0.00 0.00 0.00 2.62
8682 12179 4.138290 TGAAGTATTTGGAGTTGGCGAAA 58.862 39.130 0.00 0.00 0.00 3.46
8683 12180 3.745799 TGAAGTATTTGGAGTTGGCGAA 58.254 40.909 0.00 0.00 0.00 4.70
8684 12181 3.410631 TGAAGTATTTGGAGTTGGCGA 57.589 42.857 0.00 0.00 0.00 5.54
8685 12182 4.701956 AATGAAGTATTTGGAGTTGGCG 57.298 40.909 0.00 0.00 0.00 5.69
8714 13274 5.192927 TCATGAACCTAATTGGGCTTGTAG 58.807 41.667 7.93 0.00 41.11 2.74
8715 13275 5.186256 TCATGAACCTAATTGGGCTTGTA 57.814 39.130 7.93 0.00 41.11 2.41
8728 13288 9.417561 AGAATTCAATATCATGTTCATGAACCT 57.582 29.630 30.66 21.08 40.46 3.50
8783 13343 7.777440 AGAAGAGAAGTTGAAAGTCTTTTGGAT 59.223 33.333 0.00 0.00 0.00 3.41
8791 13351 8.401709 ACAATTGAAGAAGAGAAGTTGAAAGTC 58.598 33.333 13.59 0.00 0.00 3.01
8797 13357 7.701445 AGACAACAATTGAAGAAGAGAAGTTG 58.299 34.615 13.59 4.08 39.57 3.16
8818 13378 0.035317 AATGCGAGGAGTGCAAGACA 59.965 50.000 0.00 0.00 46.87 3.41
8827 13387 2.544685 CACAAGGTAGAATGCGAGGAG 58.455 52.381 0.00 0.00 0.00 3.69
8833 13393 2.680339 GGAGAAGCACAAGGTAGAATGC 59.320 50.000 0.00 0.00 38.39 3.56
8892 13452 3.070748 GAGTTGGAGGCAGAGAGAAAAC 58.929 50.000 0.00 0.00 0.00 2.43
8941 13501 5.931441 AAGAATGGAGTTTCTTCAAGACG 57.069 39.130 0.00 0.00 41.01 4.18
8995 13555 4.093743 GGTCACCAATATCAAAAAGGGGT 58.906 43.478 0.00 0.00 0.00 4.95
9012 13572 1.476891 TCAGAGCTAATCGGTGGTCAC 59.523 52.381 0.00 0.00 33.63 3.67
9033 13593 1.078637 GGGAAGGCCGAAGTGGTAC 60.079 63.158 0.00 0.00 41.21 3.34
9042 13602 1.533711 ATGATGAAGGGGAAGGCCG 59.466 57.895 0.00 0.00 33.83 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.