Multiple sequence alignment - TraesCS7D01G003000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G003000 chr7D 100.000 6414 0 0 1 6414 1958850 1965263 0.000000e+00 11845
1 TraesCS7D01G003000 chr7D 92.453 106 8 0 4950 5055 310990301 310990196 1.110000e-32 152
2 TraesCS7D01G003000 chr7D 88.889 117 12 1 4941 5056 236821652 236821536 6.700000e-30 143
3 TraesCS7D01G003000 chr7D 85.567 97 12 2 6264 6359 1941224 1941129 4.090000e-17 100
4 TraesCS7D01G003000 chr7A 92.830 3389 189 28 1543 4900 1723186 1719821 0.000000e+00 4863
5 TraesCS7D01G003000 chr7A 95.133 863 32 6 5132 5986 1719822 1718962 0.000000e+00 1352
6 TraesCS7D01G003000 chr7A 88.806 670 38 22 901 1547 1723875 1723220 0.000000e+00 787
7 TraesCS7D01G003000 chr7A 91.239 331 11 5 6102 6414 1718530 1718200 9.880000e-118 435
8 TraesCS7D01G003000 chr7A 75.226 775 82 59 2 738 1724703 1724001 3.810000e-67 267
9 TraesCS7D01G003000 chr7A 95.200 125 6 0 5989 6113 1718674 1718550 1.410000e-46 198
10 TraesCS7D01G003000 chr4A 94.013 2823 134 19 2153 4951 742550112 742552923 0.000000e+00 4244
11 TraesCS7D01G003000 chr4A 94.759 954 33 9 5055 6000 742552922 742553866 0.000000e+00 1469
12 TraesCS7D01G003000 chr4A 82.896 1485 142 59 756 2169 742548656 742550099 0.000000e+00 1232
13 TraesCS7D01G003000 chr4A 77.173 771 66 43 5 702 742547818 742548551 1.320000e-91 348
14 TraesCS7D01G003000 chr7B 92.593 108 8 0 4950 5057 357651590 357651483 8.610000e-34 156
15 TraesCS7D01G003000 chr6B 89.831 118 11 1 4941 5058 492505533 492505649 4.010000e-32 150
16 TraesCS7D01G003000 chr5D 91.589 107 9 0 4950 5056 472997540 472997434 1.440000e-31 148
17 TraesCS7D01G003000 chr5D 90.179 112 10 1 4950 5060 282007012 282007123 1.860000e-30 145
18 TraesCS7D01G003000 chr5A 91.509 106 7 2 4952 5057 412029318 412029215 1.860000e-30 145
19 TraesCS7D01G003000 chr1D 88.333 120 12 2 4949 5067 478886051 478885933 6.700000e-30 143
20 TraesCS7D01G003000 chr3D 87.603 121 14 1 4936 5056 578617993 578617874 8.670000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G003000 chr7D 1958850 1965263 6413 False 11845.00 11845 100.00000 1 6414 1 chr7D.!!$F1 6413
1 TraesCS7D01G003000 chr7A 1718200 1724703 6503 True 1317.00 4863 89.73900 2 6414 6 chr7A.!!$R1 6412
2 TraesCS7D01G003000 chr4A 742547818 742553866 6048 False 1823.25 4244 87.21025 5 6000 4 chr4A.!!$F1 5995

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 443 0.107165 CGAGGGGACAAGGGATTTCC 60.107 60.000 0.00 0.0 0.00 3.13 F
1091 1292 0.035881 TGCCTCTGCTCTGTTTCCTG 59.964 55.000 0.00 0.0 38.71 3.86 F
2468 2790 0.036732 ATGTTTCTCTTCTGCGCCCA 59.963 50.000 4.18 0.0 0.00 5.36 F
2496 2818 0.032540 CCTTGCCCACAAAAGCACTC 59.967 55.000 0.00 0.0 39.10 3.51 F
3279 3613 0.467384 ATCATCTCTTGTCAGGGGCG 59.533 55.000 0.00 0.0 0.00 6.13 F
3588 3922 0.684153 GCAGCCCAAAGCCTTATCCA 60.684 55.000 0.00 0.0 45.47 3.41 F
5116 5460 1.068434 TGACACGTGAAGCATGACAGA 59.932 47.619 25.01 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 2139 0.186630 CATTGGCCCTGATCCCATCA 59.813 55.000 0.00 0.0 37.76 3.07 R
2472 2794 0.033920 CTTTTGTGGGCAAGGGCTTC 59.966 55.000 0.00 0.0 40.87 3.86 R
4444 4784 0.899717 GCATTTGTTCTGCAGGGGGA 60.900 55.000 15.13 0.0 39.46 4.81 R
4445 4785 1.186917 TGCATTTGTTCTGCAGGGGG 61.187 55.000 15.13 0.0 44.30 5.40 R
5098 5442 1.069204 ACTCTGTCATGCTTCACGTGT 59.931 47.619 16.51 0.0 36.60 4.49 R
5367 5713 1.134965 CCCCGGATATCTTGATCTCGC 60.135 57.143 0.73 0.0 0.00 5.03 R
6255 6931 1.461127 GTGTGAGTTGAGGTTCGATGC 59.539 52.381 0.00 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 66 5.999987 TCCCACTACTACTACTTCCCATA 57.000 43.478 0.00 0.00 0.00 2.74
63 69 8.060727 TCCCACTACTACTACTTCCCATATTA 57.939 38.462 0.00 0.00 0.00 0.98
65 71 9.151177 CCCACTACTACTACTTCCCATATTAAA 57.849 37.037 0.00 0.00 0.00 1.52
214 253 6.096141 TCTCTCTTGATGATTCACTAGTGGAC 59.904 42.308 22.48 13.86 0.00 4.02
272 341 5.641636 AGAAAAGATTTCGCCTTTCTCTCTC 59.358 40.000 0.00 0.00 33.15 3.20
277 346 2.799126 TCGCCTTTCTCTCTCTCTCT 57.201 50.000 0.00 0.00 0.00 3.10
279 348 2.238646 TCGCCTTTCTCTCTCTCTCTCT 59.761 50.000 0.00 0.00 0.00 3.10
280 349 3.016736 CGCCTTTCTCTCTCTCTCTCTT 58.983 50.000 0.00 0.00 0.00 2.85
281 350 3.443681 CGCCTTTCTCTCTCTCTCTCTTT 59.556 47.826 0.00 0.00 0.00 2.52
282 351 4.438744 CGCCTTTCTCTCTCTCTCTCTTTC 60.439 50.000 0.00 0.00 0.00 2.62
283 352 4.142160 GCCTTTCTCTCTCTCTCTCTTTCC 60.142 50.000 0.00 0.00 0.00 3.13
284 353 4.402474 CCTTTCTCTCTCTCTCTCTTTCCC 59.598 50.000 0.00 0.00 0.00 3.97
285 354 3.662759 TCTCTCTCTCTCTCTTTCCCC 57.337 52.381 0.00 0.00 0.00 4.81
286 355 3.197983 TCTCTCTCTCTCTCTTTCCCCT 58.802 50.000 0.00 0.00 0.00 4.79
287 356 3.202151 TCTCTCTCTCTCTCTTTCCCCTC 59.798 52.174 0.00 0.00 0.00 4.30
289 358 1.289530 TCTCTCTCTCTTTCCCCTCCC 59.710 57.143 0.00 0.00 0.00 4.30
290 359 1.007721 CTCTCTCTCTTTCCCCTCCCA 59.992 57.143 0.00 0.00 0.00 4.37
292 361 0.491823 TCTCTCTTTCCCCTCCCACA 59.508 55.000 0.00 0.00 0.00 4.17
293 362 0.615850 CTCTCTTTCCCCTCCCACAC 59.384 60.000 0.00 0.00 0.00 3.82
294 363 0.840722 TCTCTTTCCCCTCCCACACC 60.841 60.000 0.00 0.00 0.00 4.16
363 432 4.452733 CCAAGGCGACGAGGGGAC 62.453 72.222 0.00 0.00 0.00 4.46
370 439 2.058595 CGACGAGGGGACAAGGGAT 61.059 63.158 0.00 0.00 0.00 3.85
374 443 0.107165 CGAGGGGACAAGGGATTTCC 60.107 60.000 0.00 0.00 0.00 3.13
468 548 1.155155 GGTTCTTTCTTGGCCCCCA 59.845 57.895 0.00 0.00 0.00 4.96
470 550 1.644509 GTTCTTTCTTGGCCCCCAAT 58.355 50.000 0.00 0.00 43.07 3.16
472 552 1.937191 TCTTTCTTGGCCCCCAATTC 58.063 50.000 0.00 0.00 43.07 2.17
473 553 1.432807 TCTTTCTTGGCCCCCAATTCT 59.567 47.619 0.00 0.00 43.07 2.40
475 555 1.937191 TTCTTGGCCCCCAATTCTTC 58.063 50.000 0.00 0.00 43.07 2.87
485 582 0.972471 CCAATTCTTCCTGGGTGGGC 60.972 60.000 0.00 0.00 36.20 5.36
529 628 3.798650 CGAATTTGCGCCGCCTGA 61.799 61.111 6.63 0.00 0.00 3.86
532 631 2.668261 GAATTTGCGCCGCCTGATCC 62.668 60.000 6.63 0.00 0.00 3.36
577 680 7.408756 TGTTAATCTTCCCTGATTTGATTGG 57.591 36.000 0.00 0.00 37.73 3.16
584 687 4.419282 TCCCTGATTTGATTGGCTTTCTT 58.581 39.130 0.00 0.00 0.00 2.52
585 688 5.579047 TCCCTGATTTGATTGGCTTTCTTA 58.421 37.500 0.00 0.00 0.00 2.10
586 689 5.418840 TCCCTGATTTGATTGGCTTTCTTAC 59.581 40.000 0.00 0.00 0.00 2.34
587 690 5.420104 CCCTGATTTGATTGGCTTTCTTACT 59.580 40.000 0.00 0.00 0.00 2.24
588 691 6.071165 CCCTGATTTGATTGGCTTTCTTACTT 60.071 38.462 0.00 0.00 0.00 2.24
589 692 7.031975 CCTGATTTGATTGGCTTTCTTACTTC 58.968 38.462 0.00 0.00 0.00 3.01
590 693 6.924111 TGATTTGATTGGCTTTCTTACTTCC 58.076 36.000 0.00 0.00 0.00 3.46
591 694 5.722021 TTTGATTGGCTTTCTTACTTCCC 57.278 39.130 0.00 0.00 0.00 3.97
592 695 4.657814 TGATTGGCTTTCTTACTTCCCT 57.342 40.909 0.00 0.00 0.00 4.20
593 696 4.335416 TGATTGGCTTTCTTACTTCCCTG 58.665 43.478 0.00 0.00 0.00 4.45
594 697 4.042809 TGATTGGCTTTCTTACTTCCCTGA 59.957 41.667 0.00 0.00 0.00 3.86
595 698 4.657814 TTGGCTTTCTTACTTCCCTGAT 57.342 40.909 0.00 0.00 0.00 2.90
596 699 4.657814 TGGCTTTCTTACTTCCCTGATT 57.342 40.909 0.00 0.00 0.00 2.57
597 700 4.998051 TGGCTTTCTTACTTCCCTGATTT 58.002 39.130 0.00 0.00 0.00 2.17
598 701 6.134535 TGGCTTTCTTACTTCCCTGATTTA 57.865 37.500 0.00 0.00 0.00 1.40
599 702 6.548321 TGGCTTTCTTACTTCCCTGATTTAA 58.452 36.000 0.00 0.00 0.00 1.52
638 750 3.794028 CGAATTCGAGCTCTCTTACTTGG 59.206 47.826 23.29 0.00 43.02 3.61
654 766 1.927174 CTTGGCAATAAGGTCGTCTCG 59.073 52.381 0.00 0.00 0.00 4.04
655 767 0.892755 TGGCAATAAGGTCGTCTCGT 59.107 50.000 0.00 0.00 0.00 4.18
658 770 2.452105 GCAATAAGGTCGTCTCGTCTC 58.548 52.381 0.00 0.00 0.00 3.36
659 771 2.097791 GCAATAAGGTCGTCTCGTCTCT 59.902 50.000 0.00 0.00 0.00 3.10
660 772 3.789459 GCAATAAGGTCGTCTCGTCTCTC 60.789 52.174 0.00 0.00 0.00 3.20
662 774 1.729284 AAGGTCGTCTCGTCTCTCTC 58.271 55.000 0.00 0.00 0.00 3.20
663 775 0.108041 AGGTCGTCTCGTCTCTCTCC 60.108 60.000 0.00 0.00 0.00 3.71
691 803 3.641434 TCTACTACTCGTACTTGGGCT 57.359 47.619 0.00 0.00 0.00 5.19
702 814 0.620556 ACTTGGGCTGGATCGTTGAT 59.379 50.000 0.00 0.00 0.00 2.57
703 815 1.004745 ACTTGGGCTGGATCGTTGATT 59.995 47.619 0.00 0.00 0.00 2.57
753 889 3.439825 TGTTGATTGATTCATCGTGGGTG 59.560 43.478 0.00 0.00 33.34 4.61
755 891 1.334869 GATTGATTCATCGTGGGTGGC 59.665 52.381 0.00 0.00 0.00 5.01
756 892 0.679640 TTGATTCATCGTGGGTGGCC 60.680 55.000 0.00 0.00 0.00 5.36
757 893 1.823899 GATTCATCGTGGGTGGCCC 60.824 63.158 0.00 0.00 45.71 5.80
782 946 0.109643 GCCGCCGGTATTTTCGTTTT 60.110 50.000 4.45 0.00 0.00 2.43
783 947 1.130186 GCCGCCGGTATTTTCGTTTTA 59.870 47.619 4.45 0.00 0.00 1.52
797 961 3.215975 TCGTTTTAGGGGGTCAAAGTTG 58.784 45.455 0.00 0.00 0.00 3.16
814 982 2.175715 AGTTGGTTGCTTCCTTCCTTCT 59.824 45.455 0.00 0.00 0.00 2.85
815 983 2.959030 GTTGGTTGCTTCCTTCCTTCTT 59.041 45.455 0.00 0.00 0.00 2.52
816 984 3.312736 TGGTTGCTTCCTTCCTTCTTT 57.687 42.857 0.00 0.00 0.00 2.52
817 985 2.958355 TGGTTGCTTCCTTCCTTCTTTG 59.042 45.455 0.00 0.00 0.00 2.77
818 986 2.959030 GGTTGCTTCCTTCCTTCTTTGT 59.041 45.455 0.00 0.00 0.00 2.83
819 987 3.384789 GGTTGCTTCCTTCCTTCTTTGTT 59.615 43.478 0.00 0.00 0.00 2.83
820 988 4.141937 GGTTGCTTCCTTCCTTCTTTGTTT 60.142 41.667 0.00 0.00 0.00 2.83
821 989 4.918810 TGCTTCCTTCCTTCTTTGTTTC 57.081 40.909 0.00 0.00 0.00 2.78
822 990 3.636764 TGCTTCCTTCCTTCTTTGTTTCC 59.363 43.478 0.00 0.00 0.00 3.13
823 991 3.891977 GCTTCCTTCCTTCTTTGTTTCCT 59.108 43.478 0.00 0.00 0.00 3.36
824 992 4.022762 GCTTCCTTCCTTCTTTGTTTCCTC 60.023 45.833 0.00 0.00 0.00 3.71
825 993 5.380900 CTTCCTTCCTTCTTTGTTTCCTCT 58.619 41.667 0.00 0.00 0.00 3.69
850 1022 5.116882 GTGCTTATCCAGTTCCGAAATACT 58.883 41.667 0.00 0.00 0.00 2.12
875 1047 0.889186 CCCACTCTTTGACCCGGTTG 60.889 60.000 0.00 0.00 0.00 3.77
885 1057 2.830827 CCCGGTTGGTTGTGCACA 60.831 61.111 17.42 17.42 0.00 4.57
899 1084 1.307647 GCACATCCCCACCAATCCT 59.692 57.895 0.00 0.00 0.00 3.24
906 1095 2.205342 TCCCCACCAATCCTTCCTAAG 58.795 52.381 0.00 0.00 0.00 2.18
926 1115 1.395954 GTCATCCGCGTTTTCCTTACC 59.604 52.381 4.92 0.00 0.00 2.85
931 1120 1.135517 CCGCGTTTTCCTTACCCATTG 60.136 52.381 4.92 0.00 0.00 2.82
938 1127 4.864704 TTTCCTTACCCATTGACAAAGC 57.135 40.909 0.00 0.00 0.00 3.51
944 1134 5.817816 CCTTACCCATTGACAAAGCTACTAG 59.182 44.000 0.00 0.00 0.00 2.57
946 1136 7.364408 CCTTACCCATTGACAAAGCTACTAGTA 60.364 40.741 1.89 1.89 0.00 1.82
953 1143 6.137794 TGACAAAGCTACTAGTAGATGCTC 57.862 41.667 30.09 19.12 35.21 4.26
971 1165 3.119029 TGCTCAAATTAGCTCCATTTGCC 60.119 43.478 19.72 15.03 43.19 4.52
973 1167 4.735873 GCTCAAATTAGCTCCATTTGCCTC 60.736 45.833 19.72 11.12 40.19 4.70
1043 1244 2.985456 CCCACCAGGTCTCTGCTC 59.015 66.667 0.00 0.00 39.61 4.26
1058 1259 4.018506 TCTCTGCTCCCTCCTCTATCTATG 60.019 50.000 0.00 0.00 0.00 2.23
1077 1278 1.028868 GTCAATGTCTGCCCTGCCTC 61.029 60.000 0.00 0.00 0.00 4.70
1091 1292 0.035881 TGCCTCTGCTCTGTTTCCTG 59.964 55.000 0.00 0.00 38.71 3.86
1092 1293 1.304509 GCCTCTGCTCTGTTTCCTGC 61.305 60.000 0.00 0.00 33.53 4.85
1093 1294 0.324285 CCTCTGCTCTGTTTCCTGCT 59.676 55.000 0.00 0.00 0.00 4.24
1094 1295 1.271271 CCTCTGCTCTGTTTCCTGCTT 60.271 52.381 0.00 0.00 0.00 3.91
1095 1296 2.075338 CTCTGCTCTGTTTCCTGCTTC 58.925 52.381 0.00 0.00 0.00 3.86
1096 1297 1.417517 TCTGCTCTGTTTCCTGCTTCA 59.582 47.619 0.00 0.00 0.00 3.02
1099 1300 2.368548 TGCTCTGTTTCCTGCTTCACTA 59.631 45.455 0.00 0.00 0.00 2.74
1100 1301 3.008375 TGCTCTGTTTCCTGCTTCACTAT 59.992 43.478 0.00 0.00 0.00 2.12
1101 1302 3.620821 GCTCTGTTTCCTGCTTCACTATC 59.379 47.826 0.00 0.00 0.00 2.08
1102 1303 4.622695 GCTCTGTTTCCTGCTTCACTATCT 60.623 45.833 0.00 0.00 0.00 1.98
1103 1304 5.078411 TCTGTTTCCTGCTTCACTATCTC 57.922 43.478 0.00 0.00 0.00 2.75
1105 1313 4.825422 TGTTTCCTGCTTCACTATCTCTG 58.175 43.478 0.00 0.00 0.00 3.35
1110 1321 3.808726 CCTGCTTCACTATCTCTGAATGC 59.191 47.826 0.00 0.00 0.00 3.56
1112 1323 3.137533 GCTTCACTATCTCTGAATGCCC 58.862 50.000 0.00 0.00 0.00 5.36
1113 1324 3.432749 GCTTCACTATCTCTGAATGCCCA 60.433 47.826 0.00 0.00 0.00 5.36
1121 1332 3.167485 TCTCTGAATGCCCATGCTTTTT 58.833 40.909 0.00 0.00 35.23 1.94
1331 1548 1.069500 ACTGCCGCACGAAAAATGTAC 60.069 47.619 0.00 0.00 0.00 2.90
1360 1580 1.112916 CCCGCCAATAATTGTCCCCC 61.113 60.000 0.00 0.00 0.00 5.40
1404 1624 7.148672 TGCCAATGATTGCGTATTTTTGTTTAG 60.149 33.333 0.00 0.00 0.00 1.85
1443 1673 6.025749 TGTCTATGTCAGAGTTACCAGTTG 57.974 41.667 0.00 0.00 32.51 3.16
1454 1684 3.957497 AGTTACCAGTTGGCATTGTTCAA 59.043 39.130 0.00 0.00 39.32 2.69
1455 1685 2.888834 ACCAGTTGGCATTGTTCAAC 57.111 45.000 13.41 13.41 42.37 3.18
1491 1724 2.031870 AGGGAACACCAGTTTTTGCTC 58.968 47.619 0.00 0.00 43.89 4.26
1511 1744 5.639506 TGCTCTTAACTTGTCTCAGCATTAC 59.360 40.000 0.00 0.00 30.57 1.89
1522 1755 2.907910 CAGCATTACTGTGCCAGAAC 57.092 50.000 8.91 0.00 46.19 3.01
1538 1771 4.440880 CCAGAACAAGTTTGGCAAAATCA 58.559 39.130 15.29 0.00 0.00 2.57
1735 2007 2.141517 GCTGGGATCACGAATGAGATG 58.858 52.381 0.00 0.00 38.57 2.90
1741 2013 1.194218 TCACGAATGAGATGGAGCCA 58.806 50.000 0.00 0.00 0.00 4.75
1742 2014 1.764723 TCACGAATGAGATGGAGCCAT 59.235 47.619 0.71 0.71 39.69 4.40
1751 2023 0.883814 GATGGAGCCATCTTCGCAGG 60.884 60.000 19.70 0.00 46.67 4.85
1795 2067 2.397549 GAGTTTGATGTGTTTGGCAGC 58.602 47.619 0.00 0.00 0.00 5.25
1865 2137 4.678256 TGGTTTGGGGAATGCAAGTATAA 58.322 39.130 0.00 0.00 0.00 0.98
1867 2139 4.709886 GGTTTGGGGAATGCAAGTATAAGT 59.290 41.667 0.00 0.00 0.00 2.24
1903 2175 5.762711 GGCCAATGGAGTAAACAACAATTTT 59.237 36.000 2.05 0.00 0.00 1.82
1906 2178 6.293353 CCAATGGAGTAAACAACAATTTTGGC 60.293 38.462 0.00 0.00 0.00 4.52
2033 2305 2.100584 CTGCGCTCTCTCTTTGAGGTAT 59.899 50.000 9.73 0.00 42.86 2.73
2034 2306 2.159184 TGCGCTCTCTCTTTGAGGTATG 60.159 50.000 9.73 0.00 42.86 2.39
2035 2307 2.099921 GCGCTCTCTCTTTGAGGTATGA 59.900 50.000 0.00 0.00 42.86 2.15
2037 2309 4.109050 CGCTCTCTCTTTGAGGTATGAAC 58.891 47.826 0.00 0.00 42.86 3.18
2038 2310 4.142271 CGCTCTCTCTTTGAGGTATGAACT 60.142 45.833 0.00 0.00 42.86 3.01
2039 2311 5.108517 GCTCTCTCTTTGAGGTATGAACTG 58.891 45.833 0.00 0.00 42.86 3.16
2040 2312 5.078411 TCTCTCTTTGAGGTATGAACTGC 57.922 43.478 0.00 0.00 42.86 4.40
2041 2313 4.528206 TCTCTCTTTGAGGTATGAACTGCA 59.472 41.667 0.00 0.00 42.86 4.41
2042 2314 4.825422 TCTCTTTGAGGTATGAACTGCAG 58.175 43.478 13.48 13.48 0.00 4.41
2045 2317 2.768253 TGAGGTATGAACTGCAGTGG 57.232 50.000 22.49 0.00 0.00 4.00
2046 2318 1.977854 TGAGGTATGAACTGCAGTGGT 59.022 47.619 22.49 11.93 0.00 4.16
2047 2319 2.371841 TGAGGTATGAACTGCAGTGGTT 59.628 45.455 22.49 4.26 0.00 3.67
2048 2320 3.580895 TGAGGTATGAACTGCAGTGGTTA 59.419 43.478 22.49 9.37 0.00 2.85
2049 2321 4.041075 TGAGGTATGAACTGCAGTGGTTAA 59.959 41.667 22.49 4.87 0.00 2.01
2059 2351 6.743575 ACTGCAGTGGTTAACAGATTTATC 57.256 37.500 20.97 0.00 34.25 1.75
2061 2353 7.620880 ACTGCAGTGGTTAACAGATTTATCTA 58.379 34.615 20.97 0.00 34.85 1.98
2065 2357 8.604890 GCAGTGGTTAACAGATTTATCTACTTC 58.395 37.037 8.10 0.00 34.85 3.01
2094 2386 3.042871 TGCATTTCCAGTCCAATTTGC 57.957 42.857 0.00 0.00 0.00 3.68
2095 2387 2.633967 TGCATTTCCAGTCCAATTTGCT 59.366 40.909 0.00 0.00 0.00 3.91
2096 2388 3.831333 TGCATTTCCAGTCCAATTTGCTA 59.169 39.130 0.00 0.00 0.00 3.49
2104 2397 6.065374 TCCAGTCCAATTTGCTAGTTTTACA 58.935 36.000 0.00 0.00 0.00 2.41
2105 2398 6.719370 TCCAGTCCAATTTGCTAGTTTTACAT 59.281 34.615 0.00 0.00 0.00 2.29
2127 2420 4.065321 AGCAGCAGTAGGTGTATCATTC 57.935 45.455 0.00 0.00 44.89 2.67
2208 2530 5.411361 TGTGTTGACTAATCATAACCACTGC 59.589 40.000 0.00 0.00 33.85 4.40
2324 2646 2.602217 CCTTTACACTGCAACGAAGCAC 60.602 50.000 2.57 0.00 40.11 4.40
2384 2706 3.410516 CGTGGTGCGATGCGTTCA 61.411 61.111 0.00 0.00 44.77 3.18
2423 2745 3.034635 GAGGAGGAGGAAGCTTGACATA 58.965 50.000 2.10 0.00 0.00 2.29
2464 2786 5.049405 AGGTTTGTTATGTTTCTCTTCTGCG 60.049 40.000 0.00 0.00 0.00 5.18
2468 2790 0.036732 ATGTTTCTCTTCTGCGCCCA 59.963 50.000 4.18 0.00 0.00 5.36
2470 2792 0.729690 GTTTCTCTTCTGCGCCCATC 59.270 55.000 4.18 0.00 0.00 3.51
2471 2793 0.615331 TTTCTCTTCTGCGCCCATCT 59.385 50.000 4.18 0.00 0.00 2.90
2472 2794 0.107993 TTCTCTTCTGCGCCCATCTG 60.108 55.000 4.18 0.00 0.00 2.90
2473 2795 0.972471 TCTCTTCTGCGCCCATCTGA 60.972 55.000 4.18 0.00 0.00 3.27
2482 2804 2.421399 GCCCATCTGAAGCCCTTGC 61.421 63.158 0.00 0.00 37.95 4.01
2492 2814 2.031012 GCCCTTGCCCACAAAAGC 59.969 61.111 0.00 0.00 34.74 3.51
2494 2816 1.069596 CCCTTGCCCACAAAAGCAC 59.930 57.895 0.00 0.00 39.10 4.40
2496 2818 0.032540 CCTTGCCCACAAAAGCACTC 59.967 55.000 0.00 0.00 39.10 3.51
2504 2826 3.070015 CCCACAAAAGCACTCCTTGAAAT 59.930 43.478 0.00 0.00 33.01 2.17
2587 2910 8.383175 ACTCTTGTTATCTTTAACTTGGATCCA 58.617 33.333 11.44 11.44 38.81 3.41
2647 2970 4.856182 ACTTATGGGGAAGTAAAGGAGGTT 59.144 41.667 0.00 0.00 37.90 3.50
2680 3003 5.069914 ACTCCCAAATTTTGTTCCCACTAAC 59.930 40.000 8.26 0.00 0.00 2.34
2692 3015 7.377696 TGTTCCCACTAACTTAAGGTTTCTA 57.622 36.000 7.53 0.00 39.17 2.10
2724 3047 5.556355 TGCAGCTTCATACATCTTTCTTG 57.444 39.130 0.00 0.00 0.00 3.02
2975 3306 4.596643 AGATATGCCTGTTTGCTCCTCTAT 59.403 41.667 0.00 0.00 0.00 1.98
2981 3312 4.314121 CCTGTTTGCTCCTCTATAGATGC 58.686 47.826 2.11 8.90 0.00 3.91
3117 3451 6.881065 CCTTGGTCATGAACTAGAAGATGAAA 59.119 38.462 21.78 0.00 0.00 2.69
3136 3470 5.437060 TGAAACCAGAGGTTATAGGCATTC 58.563 41.667 1.26 0.00 46.20 2.67
3137 3471 5.191722 TGAAACCAGAGGTTATAGGCATTCT 59.808 40.000 1.26 0.00 46.20 2.40
3138 3472 4.965200 ACCAGAGGTTATAGGCATTCTC 57.035 45.455 0.00 0.00 27.29 2.87
3179 3513 1.343176 GCTAACTCTCCCCCAGGTACT 60.343 57.143 0.00 0.00 43.88 2.73
3202 3536 8.974060 ACTTTTACTGGATCAGTTTTAAGTCA 57.026 30.769 5.86 0.00 42.59 3.41
3279 3613 0.467384 ATCATCTCTTGTCAGGGGCG 59.533 55.000 0.00 0.00 0.00 6.13
3438 3772 6.148976 GGAAGGACAACAACTGGTCTAAATAC 59.851 42.308 0.00 0.00 34.49 1.89
3477 3811 3.884774 AACCAGTCCCTTGGCGCA 61.885 61.111 10.83 0.00 42.18 6.09
3588 3922 0.684153 GCAGCCCAAAGCCTTATCCA 60.684 55.000 0.00 0.00 45.47 3.41
3648 3982 2.756760 AGTTGGTCATGCAATGTCATCC 59.243 45.455 0.00 0.00 46.80 3.51
3828 4162 6.248420 CGTTTATGAATCAAGTTAGGTTTGCG 59.752 38.462 0.00 0.00 0.00 4.85
4020 4354 2.025416 TGGGAACACCACATATCAAGGG 60.025 50.000 0.00 0.00 46.80 3.95
4197 4531 8.948631 TTAAAAACATTCCAAACAAGTATGCA 57.051 26.923 0.00 0.00 0.00 3.96
4198 4532 7.481275 AAAAACATTCCAAACAAGTATGCAG 57.519 32.000 0.00 0.00 0.00 4.41
4199 4533 5.789643 AACATTCCAAACAAGTATGCAGT 57.210 34.783 0.00 0.00 0.00 4.40
4201 4535 6.160576 ACATTCCAAACAAGTATGCAGTTT 57.839 33.333 0.00 0.00 36.00 2.66
4202 4536 7.283625 ACATTCCAAACAAGTATGCAGTTTA 57.716 32.000 1.20 0.00 34.03 2.01
4203 4537 7.721402 ACATTCCAAACAAGTATGCAGTTTAA 58.279 30.769 1.20 0.00 34.03 1.52
4204 4538 8.367156 ACATTCCAAACAAGTATGCAGTTTAAT 58.633 29.630 1.20 0.00 34.03 1.40
4205 4539 8.649841 CATTCCAAACAAGTATGCAGTTTAATG 58.350 33.333 1.20 5.54 34.03 1.90
4207 4541 5.348451 CCAAACAAGTATGCAGTTTAATGCC 59.652 40.000 0.00 0.00 45.91 4.40
4212 4550 5.920193 AGTATGCAGTTTAATGCCATGTT 57.080 34.783 0.00 0.00 45.91 2.71
4220 4558 6.018016 GCAGTTTAATGCCATGTTTTCTTGTT 60.018 34.615 0.00 0.00 40.43 2.83
4241 4581 7.389803 TGTTTGCTCTTTATATTGCTTGCTA 57.610 32.000 0.00 0.00 0.00 3.49
4242 4582 7.825681 TGTTTGCTCTTTATATTGCTTGCTAA 58.174 30.769 0.00 0.00 0.00 3.09
4250 4590 9.845740 TCTTTATATTGCTTGCTAATTGTCCTA 57.154 29.630 0.00 0.00 0.00 2.94
4253 4593 5.582689 ATTGCTTGCTAATTGTCCTAACC 57.417 39.130 0.00 0.00 0.00 2.85
4270 4610 5.538433 TCCTAACCCAGTTTTTCCTGAATTG 59.462 40.000 0.00 0.00 34.23 2.32
4272 4612 3.683365 CCCAGTTTTTCCTGAATTGGG 57.317 47.619 3.48 3.48 44.37 4.12
4366 4706 5.389859 TGCCAATTGATTTCAAGGTAGTG 57.610 39.130 7.12 0.00 39.47 2.74
4372 4712 9.927668 CCAATTGATTTCAAGGTAGTGTATTTT 57.072 29.630 7.12 0.00 39.47 1.82
4399 4739 6.890663 TTGCTTCATCTTGTTGTTTTTCAG 57.109 33.333 0.00 0.00 0.00 3.02
4403 4743 4.597079 TCATCTTGTTGTTTTTCAGCGAC 58.403 39.130 0.00 0.00 0.00 5.19
4404 4744 4.335315 TCATCTTGTTGTTTTTCAGCGACT 59.665 37.500 0.00 0.00 0.00 4.18
4411 4751 5.968848 TGTTGTTTTTCAGCGACTTATTCAC 59.031 36.000 0.00 0.00 0.00 3.18
4420 4760 5.069119 TCAGCGACTTATTCACATATCCAGT 59.931 40.000 0.00 0.00 0.00 4.00
4422 4762 6.363626 CAGCGACTTATTCACATATCCAGTAC 59.636 42.308 0.00 0.00 0.00 2.73
4484 4828 3.607439 CAATGTCGGTTATGCGTTCATC 58.393 45.455 0.00 0.00 34.22 2.92
4719 5063 6.426937 AGAAATTTAACAGCGAGAAAGTAGCA 59.573 34.615 0.00 0.00 0.00 3.49
4728 5072 2.033407 CGAGAAAGTAGCATCATTGGCG 60.033 50.000 0.00 0.00 36.08 5.69
4830 5174 4.002982 GCCCCATTCTTTTTCATTCCAAC 58.997 43.478 0.00 0.00 0.00 3.77
4833 5177 4.244862 CCATTCTTTTTCATTCCAACGGG 58.755 43.478 0.00 0.00 0.00 5.28
4870 5214 8.652810 AAATCAGGTAATAAATTGCTGCATTC 57.347 30.769 1.84 0.00 0.00 2.67
4871 5215 7.592885 ATCAGGTAATAAATTGCTGCATTCT 57.407 32.000 1.84 0.00 0.00 2.40
4889 5233 5.888105 CATTCTATGCTGAAAGTGAAAGGG 58.112 41.667 0.00 0.00 35.30 3.95
4914 5258 7.009540 GGCATCTGTTTTATGAACTTGTATTGC 59.990 37.037 0.00 0.00 0.00 3.56
4923 5267 9.539825 TTTATGAACTTGTATTGCACAAAACAT 57.460 25.926 0.00 0.00 46.37 2.71
4925 5269 6.336566 TGAACTTGTATTGCACAAAACATGT 58.663 32.000 0.00 0.00 46.37 3.21
4930 5274 5.527951 TGTATTGCACAAAACATGTCCTTC 58.472 37.500 0.00 0.00 41.46 3.46
4932 5276 3.988379 TGCACAAAACATGTCCTTCTC 57.012 42.857 0.00 0.00 41.46 2.87
4941 5285 2.906389 ACATGTCCTTCTCTGGCACTAA 59.094 45.455 0.00 0.00 0.00 2.24
4943 5287 4.018960 ACATGTCCTTCTCTGGCACTAAAT 60.019 41.667 0.00 0.00 0.00 1.40
4944 5288 4.207891 TGTCCTTCTCTGGCACTAAATC 57.792 45.455 0.00 0.00 0.00 2.17
4945 5289 3.582647 TGTCCTTCTCTGGCACTAAATCA 59.417 43.478 0.00 0.00 0.00 2.57
4946 5290 4.225942 TGTCCTTCTCTGGCACTAAATCAT 59.774 41.667 0.00 0.00 0.00 2.45
4947 5291 4.574013 GTCCTTCTCTGGCACTAAATCATG 59.426 45.833 0.00 0.00 0.00 3.07
4949 5293 4.946157 CCTTCTCTGGCACTAAATCATGTT 59.054 41.667 0.00 0.00 0.00 2.71
4950 5294 6.070251 TCCTTCTCTGGCACTAAATCATGTTA 60.070 38.462 0.00 0.00 0.00 2.41
4951 5295 6.037610 CCTTCTCTGGCACTAAATCATGTTAC 59.962 42.308 0.00 0.00 0.00 2.50
4952 5296 6.299805 TCTCTGGCACTAAATCATGTTACT 57.700 37.500 0.00 0.00 0.00 2.24
4953 5297 6.341316 TCTCTGGCACTAAATCATGTTACTC 58.659 40.000 0.00 0.00 0.00 2.59
4954 5298 5.428253 TCTGGCACTAAATCATGTTACTCC 58.572 41.667 0.00 0.00 0.00 3.85
4955 5299 4.523083 TGGCACTAAATCATGTTACTCCC 58.477 43.478 0.00 0.00 0.00 4.30
4956 5300 4.227300 TGGCACTAAATCATGTTACTCCCT 59.773 41.667 0.00 0.00 0.00 4.20
4957 5301 4.816925 GGCACTAAATCATGTTACTCCCTC 59.183 45.833 0.00 0.00 0.00 4.30
4958 5302 5.396884 GGCACTAAATCATGTTACTCCCTCT 60.397 44.000 0.00 0.00 0.00 3.69
4959 5303 5.525378 GCACTAAATCATGTTACTCCCTCTG 59.475 44.000 0.00 0.00 0.00 3.35
4960 5304 6.630413 GCACTAAATCATGTTACTCCCTCTGA 60.630 42.308 0.00 0.00 0.00 3.27
4961 5305 7.504403 CACTAAATCATGTTACTCCCTCTGAT 58.496 38.462 0.00 0.00 0.00 2.90
4962 5306 7.655328 CACTAAATCATGTTACTCCCTCTGATC 59.345 40.741 0.00 0.00 0.00 2.92
4963 5307 5.559148 AATCATGTTACTCCCTCTGATCC 57.441 43.478 0.00 0.00 0.00 3.36
4964 5308 3.994317 TCATGTTACTCCCTCTGATCCA 58.006 45.455 0.00 0.00 0.00 3.41
4965 5309 4.560739 TCATGTTACTCCCTCTGATCCAT 58.439 43.478 0.00 0.00 0.00 3.41
4966 5310 5.715921 TCATGTTACTCCCTCTGATCCATA 58.284 41.667 0.00 0.00 0.00 2.74
4967 5311 6.326161 TCATGTTACTCCCTCTGATCCATAT 58.674 40.000 0.00 0.00 0.00 1.78
4968 5312 6.789457 TCATGTTACTCCCTCTGATCCATATT 59.211 38.462 0.00 0.00 0.00 1.28
4969 5313 7.955750 TCATGTTACTCCCTCTGATCCATATTA 59.044 37.037 0.00 0.00 0.00 0.98
4970 5314 7.782897 TGTTACTCCCTCTGATCCATATTAG 57.217 40.000 0.00 0.00 0.00 1.73
4971 5315 7.306013 TGTTACTCCCTCTGATCCATATTAGT 58.694 38.462 0.00 0.00 0.00 2.24
4972 5316 7.789831 TGTTACTCCCTCTGATCCATATTAGTT 59.210 37.037 0.00 0.00 0.00 2.24
4973 5317 9.310449 GTTACTCCCTCTGATCCATATTAGTTA 57.690 37.037 0.00 0.00 0.00 2.24
4975 5319 8.602472 ACTCCCTCTGATCCATATTAGTTATC 57.398 38.462 0.00 0.00 0.00 1.75
4976 5320 8.180165 ACTCCCTCTGATCCATATTAGTTATCA 58.820 37.037 0.00 0.00 0.00 2.15
4977 5321 8.367660 TCCCTCTGATCCATATTAGTTATCAC 57.632 38.462 0.00 0.00 0.00 3.06
4978 5322 8.180165 TCCCTCTGATCCATATTAGTTATCACT 58.820 37.037 0.00 0.00 36.99 3.41
4979 5323 8.256605 CCCTCTGATCCATATTAGTTATCACTG 58.743 40.741 0.00 0.00 34.06 3.66
4980 5324 9.029368 CCTCTGATCCATATTAGTTATCACTGA 57.971 37.037 0.00 0.00 34.06 3.41
4998 5342 6.739112 TCACTGAAATGGATGTATCTAGACG 58.261 40.000 0.00 0.00 0.00 4.18
4999 5343 6.321435 TCACTGAAATGGATGTATCTAGACGT 59.679 38.462 0.00 0.00 0.00 4.34
5000 5344 7.501225 TCACTGAAATGGATGTATCTAGACGTA 59.499 37.037 0.00 0.00 0.00 3.57
5001 5345 8.300286 CACTGAAATGGATGTATCTAGACGTAT 58.700 37.037 0.00 0.00 0.00 3.06
5002 5346 8.861086 ACTGAAATGGATGTATCTAGACGTATT 58.139 33.333 0.00 0.00 0.00 1.89
5003 5347 9.698309 CTGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
5004 5348 9.692749 TGAAATGGATGTATCTAGACGTATTTC 57.307 33.333 0.00 6.14 33.65 2.17
5005 5349 9.692749 GAAATGGATGTATCTAGACGTATTTCA 57.307 33.333 0.00 0.00 33.41 2.69
5006 5350 9.698309 AAATGGATGTATCTAGACGTATTTCAG 57.302 33.333 0.00 0.00 0.00 3.02
5007 5351 7.818997 TGGATGTATCTAGACGTATTTCAGT 57.181 36.000 0.00 0.00 0.00 3.41
5008 5352 7.649057 TGGATGTATCTAGACGTATTTCAGTG 58.351 38.462 0.00 0.00 0.00 3.66
5009 5353 6.583050 GGATGTATCTAGACGTATTTCAGTGC 59.417 42.308 0.00 0.00 0.00 4.40
5010 5354 6.694877 TGTATCTAGACGTATTTCAGTGCT 57.305 37.500 0.00 0.00 0.00 4.40
5011 5355 7.797038 TGTATCTAGACGTATTTCAGTGCTA 57.203 36.000 0.00 0.00 0.00 3.49
5012 5356 7.862648 TGTATCTAGACGTATTTCAGTGCTAG 58.137 38.462 0.00 0.00 0.00 3.42
5013 5357 7.713942 TGTATCTAGACGTATTTCAGTGCTAGA 59.286 37.037 0.00 7.14 37.74 2.43
5014 5358 7.753309 ATCTAGACGTATTTCAGTGCTAGAT 57.247 36.000 10.29 10.29 38.62 1.98
5015 5359 8.850007 ATCTAGACGTATTTCAGTGCTAGATA 57.150 34.615 13.10 0.00 40.48 1.98
5016 5360 8.085720 TCTAGACGTATTTCAGTGCTAGATAC 57.914 38.462 0.00 0.00 30.90 2.24
5017 5361 6.694877 AGACGTATTTCAGTGCTAGATACA 57.305 37.500 0.00 0.00 0.00 2.29
5018 5362 7.278461 AGACGTATTTCAGTGCTAGATACAT 57.722 36.000 0.00 0.00 0.00 2.29
5019 5363 7.364200 AGACGTATTTCAGTGCTAGATACATC 58.636 38.462 0.00 0.00 0.00 3.06
5020 5364 6.448006 ACGTATTTCAGTGCTAGATACATCC 58.552 40.000 0.00 0.00 0.00 3.51
5021 5365 5.569441 CGTATTTCAGTGCTAGATACATCCG 59.431 44.000 0.00 0.00 0.00 4.18
5022 5366 5.537300 ATTTCAGTGCTAGATACATCCGT 57.463 39.130 0.00 0.00 0.00 4.69
5023 5367 5.339008 TTTCAGTGCTAGATACATCCGTT 57.661 39.130 0.00 0.00 0.00 4.44
5024 5368 5.339008 TTCAGTGCTAGATACATCCGTTT 57.661 39.130 0.00 0.00 0.00 3.60
5025 5369 4.682787 TCAGTGCTAGATACATCCGTTTG 58.317 43.478 0.00 0.00 0.00 2.93
5026 5370 4.401202 TCAGTGCTAGATACATCCGTTTGA 59.599 41.667 0.00 0.00 0.00 2.69
5027 5371 5.105513 TCAGTGCTAGATACATCCGTTTGAA 60.106 40.000 0.00 0.00 0.00 2.69
5028 5372 5.755375 CAGTGCTAGATACATCCGTTTGAAT 59.245 40.000 0.00 0.00 0.00 2.57
5029 5373 5.755375 AGTGCTAGATACATCCGTTTGAATG 59.245 40.000 0.00 0.00 0.00 2.67
5030 5374 5.753438 GTGCTAGATACATCCGTTTGAATGA 59.247 40.000 0.00 0.00 0.00 2.57
5031 5375 5.753438 TGCTAGATACATCCGTTTGAATGAC 59.247 40.000 0.00 0.00 0.00 3.06
5032 5376 5.753438 GCTAGATACATCCGTTTGAATGACA 59.247 40.000 0.00 0.00 0.00 3.58
5033 5377 6.257849 GCTAGATACATCCGTTTGAATGACAA 59.742 38.462 0.00 0.00 36.65 3.18
5034 5378 7.041780 GCTAGATACATCCGTTTGAATGACAAT 60.042 37.037 0.00 0.00 38.36 2.71
5035 5379 7.630242 AGATACATCCGTTTGAATGACAATT 57.370 32.000 0.00 0.00 38.36 2.32
5036 5380 8.731275 AGATACATCCGTTTGAATGACAATTA 57.269 30.769 0.00 0.00 38.36 1.40
5037 5381 9.173021 AGATACATCCGTTTGAATGACAATTAA 57.827 29.630 0.00 0.00 38.36 1.40
5038 5382 9.950680 GATACATCCGTTTGAATGACAATTAAT 57.049 29.630 0.00 0.00 38.36 1.40
5041 5385 9.734620 ACATCCGTTTGAATGACAATTAATATG 57.265 29.630 0.00 0.00 38.36 1.78
5042 5386 9.184062 CATCCGTTTGAATGACAATTAATATGG 57.816 33.333 0.00 0.00 38.36 2.74
5043 5387 8.512966 TCCGTTTGAATGACAATTAATATGGA 57.487 30.769 0.00 0.00 38.36 3.41
5044 5388 9.130661 TCCGTTTGAATGACAATTAATATGGAT 57.869 29.630 0.00 0.00 38.36 3.41
5045 5389 9.398170 CCGTTTGAATGACAATTAATATGGATC 57.602 33.333 0.00 0.00 38.36 3.36
5046 5390 9.949174 CGTTTGAATGACAATTAATATGGATCA 57.051 29.630 0.00 0.00 38.36 2.92
5050 5394 9.511272 TGAATGACAATTAATATGGATCAGAGG 57.489 33.333 0.00 0.00 0.00 3.69
5051 5395 8.874744 AATGACAATTAATATGGATCAGAGGG 57.125 34.615 0.00 0.00 0.00 4.30
5052 5396 7.631510 TGACAATTAATATGGATCAGAGGGA 57.368 36.000 0.00 0.00 0.00 4.20
5053 5397 7.683578 TGACAATTAATATGGATCAGAGGGAG 58.316 38.462 0.00 0.00 0.00 4.30
5086 5430 6.151691 TGTTGCAAGATAATTGAAACTCAGC 58.848 36.000 0.00 0.00 38.47 4.26
5091 5435 7.094075 TGCAAGATAATTGAAACTCAGCATCTT 60.094 33.333 0.00 0.00 33.85 2.40
5116 5460 1.068434 TGACACGTGAAGCATGACAGA 59.932 47.619 25.01 0.00 0.00 3.41
5128 5472 6.426025 TGAAGCATGACAGAGTATGATAATGC 59.574 38.462 12.78 12.78 40.05 3.56
5130 5474 6.164876 AGCATGACAGAGTATGATAATGCTC 58.835 40.000 15.71 0.00 43.11 4.26
5136 5480 7.924947 TGACAGAGTATGATAATGCTCTTGAAG 59.075 37.037 7.91 0.61 40.79 3.02
5245 5591 1.619654 TTGACCCTGAATGCAAGTGG 58.380 50.000 0.00 0.00 0.00 4.00
5278 5624 6.295462 CCATGAATGAAACTCAGGAACCATTT 60.295 38.462 0.00 0.00 0.00 2.32
5367 5713 1.550524 TGAAGAGGACGACAATCCCAG 59.449 52.381 0.00 0.00 39.91 4.45
5437 5783 7.736893 AGATTATATAACCAACGAAGAGGCTT 58.263 34.615 0.00 0.00 0.00 4.35
5549 5896 0.393808 AGGAATTATGGCGTGGCGTT 60.394 50.000 0.00 0.00 0.00 4.84
5855 6207 3.565482 CAGTGTGGAAATATGAATCCCCG 59.435 47.826 0.00 0.00 34.68 5.73
5873 6225 1.609932 CGCATTGTGCATTGTGAGTC 58.390 50.000 2.63 0.00 45.36 3.36
5948 6306 9.197306 TGATGATTCATCTTCATCCAGAATTTT 57.803 29.630 23.49 0.00 45.79 1.82
6008 6651 4.520111 TGGAATGATTAAATGATGGCCTCG 59.480 41.667 3.32 0.00 0.00 4.63
6009 6652 4.479619 GAATGATTAAATGATGGCCTCGC 58.520 43.478 3.32 0.00 0.00 5.03
6030 6673 2.802816 CCTTCGTCTTGGAAGTTCACTG 59.197 50.000 5.01 0.00 41.44 3.66
6069 6712 7.173218 TGAACTAGTTAGATGTTCTTGGCAAAG 59.827 37.037 8.42 0.00 40.27 2.77
6117 6792 6.671402 GCAAGCAGACACATATTTGAAATTGC 60.671 38.462 0.00 0.00 0.00 3.56
6130 6805 6.601741 TTTGAAATTGCAATGTCCTGAAAC 57.398 33.333 23.88 1.63 0.00 2.78
6143 6818 5.130350 TGTCCTGAAACTTTAGGGTTTGAG 58.870 41.667 0.82 0.00 39.20 3.02
6153 6828 5.535030 ACTTTAGGGTTTGAGTGATTGTTCC 59.465 40.000 0.00 0.00 0.00 3.62
6211 6886 6.471146 AGAATACCATTAGCTCAGCCTTATG 58.529 40.000 0.00 0.00 0.00 1.90
6215 6890 6.192970 ACCATTAGCTCAGCCTTATGTAAT 57.807 37.500 0.00 0.00 0.00 1.89
6285 6961 1.668751 TCAACTCACACGTTTCAAGGC 59.331 47.619 0.00 0.00 0.00 4.35
6367 7044 0.670546 CCGCACAGTTCTCACGGATT 60.671 55.000 0.00 0.00 46.71 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.071385 GATGATTGAGGCCATCCGTCT 59.929 52.381 5.01 0.00 37.47 4.18
131 148 1.977594 GCAATTGGTAGTGGACGCCG 61.978 60.000 7.72 0.00 0.00 6.46
240 283 3.361940 GGCGAAATCTTTTCTTTCTTGCG 59.638 43.478 0.00 0.00 31.79 4.85
242 285 6.920210 AGAAAGGCGAAATCTTTTCTTTCTTG 59.080 34.615 15.66 0.00 44.26 3.02
272 341 1.199615 GTGGGAGGGGAAAGAGAGAG 58.800 60.000 0.00 0.00 0.00 3.20
277 346 0.840722 GAGGTGTGGGAGGGGAAAGA 60.841 60.000 0.00 0.00 0.00 2.52
279 348 1.850755 GGAGGTGTGGGAGGGGAAA 60.851 63.158 0.00 0.00 0.00 3.13
280 349 2.204090 GGAGGTGTGGGAGGGGAA 60.204 66.667 0.00 0.00 0.00 3.97
281 350 4.348495 GGGAGGTGTGGGAGGGGA 62.348 72.222 0.00 0.00 0.00 4.81
283 352 4.354943 AGGGGAGGTGTGGGAGGG 62.355 72.222 0.00 0.00 0.00 4.30
284 353 2.689034 GAGGGGAGGTGTGGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
285 354 1.307343 ATGAGGGGAGGTGTGGGAG 60.307 63.158 0.00 0.00 0.00 4.30
286 355 1.306997 GATGAGGGGAGGTGTGGGA 60.307 63.158 0.00 0.00 0.00 4.37
287 356 2.735772 CGATGAGGGGAGGTGTGGG 61.736 68.421 0.00 0.00 0.00 4.61
289 358 2.187946 GCGATGAGGGGAGGTGTG 59.812 66.667 0.00 0.00 0.00 3.82
290 359 3.461773 CGCGATGAGGGGAGGTGT 61.462 66.667 0.00 0.00 0.00 4.16
294 363 4.207281 TTCGCGCGATGAGGGGAG 62.207 66.667 35.21 0.00 0.00 4.30
468 548 1.000896 CGCCCACCCAGGAAGAATT 60.001 57.895 0.00 0.00 41.22 2.17
470 550 3.646715 CCGCCCACCCAGGAAGAA 61.647 66.667 0.00 0.00 41.22 2.52
485 582 5.190677 AGTAATAAACCCATCAAGAACCCG 58.809 41.667 0.00 0.00 0.00 5.28
518 617 4.838152 GAAGGATCAGGCGGCGCA 62.838 66.667 34.36 14.32 0.00 6.09
529 628 3.306613 CCCTAAGTAACCGGAGAAGGAT 58.693 50.000 9.46 0.00 34.73 3.24
532 631 2.108970 AGCCCTAAGTAACCGGAGAAG 58.891 52.381 9.46 0.00 0.00 2.85
577 680 8.512966 AGATTAAATCAGGGAAGTAAGAAAGC 57.487 34.615 0.00 0.00 0.00 3.51
584 687 4.407621 TGGCGAGATTAAATCAGGGAAGTA 59.592 41.667 0.00 0.00 0.00 2.24
585 688 3.199946 TGGCGAGATTAAATCAGGGAAGT 59.800 43.478 0.00 0.00 0.00 3.01
586 689 3.808728 TGGCGAGATTAAATCAGGGAAG 58.191 45.455 0.00 0.00 0.00 3.46
587 690 3.924114 TGGCGAGATTAAATCAGGGAA 57.076 42.857 0.00 0.00 0.00 3.97
588 691 3.390967 TCATGGCGAGATTAAATCAGGGA 59.609 43.478 0.00 0.00 0.00 4.20
589 692 3.743521 TCATGGCGAGATTAAATCAGGG 58.256 45.455 0.00 0.00 0.00 4.45
590 693 5.335426 CCATTCATGGCGAGATTAAATCAGG 60.335 44.000 0.00 0.00 41.75 3.86
591 694 5.696822 CCATTCATGGCGAGATTAAATCAG 58.303 41.667 0.00 0.00 41.75 2.90
592 695 5.694231 CCATTCATGGCGAGATTAAATCA 57.306 39.130 0.00 0.00 41.75 2.57
638 750 2.097791 AGAGACGAGACGACCTTATTGC 59.902 50.000 0.00 0.00 0.00 3.56
654 766 4.542697 AGTAGATTGGGAAGGAGAGAGAC 58.457 47.826 0.00 0.00 0.00 3.36
655 767 4.890499 AGTAGATTGGGAAGGAGAGAGA 57.110 45.455 0.00 0.00 0.00 3.10
658 770 4.517453 CGAGTAGTAGATTGGGAAGGAGAG 59.483 50.000 0.00 0.00 0.00 3.20
659 771 4.079901 ACGAGTAGTAGATTGGGAAGGAGA 60.080 45.833 0.00 0.00 0.00 3.71
660 772 4.208746 ACGAGTAGTAGATTGGGAAGGAG 58.791 47.826 0.00 0.00 0.00 3.69
662 774 5.131784 AGTACGAGTAGTAGATTGGGAAGG 58.868 45.833 0.00 0.00 35.72 3.46
663 775 6.459848 CCAAGTACGAGTAGTAGATTGGGAAG 60.460 46.154 14.70 0.00 43.21 3.46
729 864 4.082787 ACCCACGATGAATCAATCAACAAC 60.083 41.667 0.00 0.00 42.54 3.32
736 872 1.392589 GCCACCCACGATGAATCAAT 58.607 50.000 0.00 0.00 0.00 2.57
740 876 2.275418 GGGCCACCCACGATGAAT 59.725 61.111 4.39 0.00 44.65 2.57
756 892 3.987954 AATACCGGCGGCAACAGGG 62.988 63.158 28.71 3.75 0.00 4.45
757 893 1.591504 AAAATACCGGCGGCAACAGG 61.592 55.000 28.71 4.18 0.00 4.00
758 894 0.179174 GAAAATACCGGCGGCAACAG 60.179 55.000 28.71 0.40 0.00 3.16
759 895 1.877367 GAAAATACCGGCGGCAACA 59.123 52.632 28.71 9.43 0.00 3.33
770 934 5.963176 TTGACCCCCTAAAACGAAAATAC 57.037 39.130 0.00 0.00 0.00 1.89
782 946 1.479757 GCAACCAACTTTGACCCCCTA 60.480 52.381 0.00 0.00 0.00 3.53
783 947 0.759060 GCAACCAACTTTGACCCCCT 60.759 55.000 0.00 0.00 0.00 4.79
797 961 2.959030 ACAAAGAAGGAAGGAAGCAACC 59.041 45.455 0.00 0.00 0.00 3.77
814 982 5.136828 TGGATAAGCACAAGAGGAAACAAA 58.863 37.500 0.00 0.00 0.00 2.83
815 983 4.724399 TGGATAAGCACAAGAGGAAACAA 58.276 39.130 0.00 0.00 0.00 2.83
816 984 4.202461 ACTGGATAAGCACAAGAGGAAACA 60.202 41.667 0.00 0.00 0.00 2.83
817 985 4.327680 ACTGGATAAGCACAAGAGGAAAC 58.672 43.478 0.00 0.00 0.00 2.78
818 986 4.640771 ACTGGATAAGCACAAGAGGAAA 57.359 40.909 0.00 0.00 0.00 3.13
819 987 4.565652 GGAACTGGATAAGCACAAGAGGAA 60.566 45.833 0.00 0.00 0.00 3.36
820 988 3.055094 GGAACTGGATAAGCACAAGAGGA 60.055 47.826 0.00 0.00 0.00 3.71
821 989 3.274288 GGAACTGGATAAGCACAAGAGG 58.726 50.000 0.00 0.00 0.00 3.69
822 990 2.932614 CGGAACTGGATAAGCACAAGAG 59.067 50.000 0.00 0.00 0.00 2.85
823 991 2.565391 TCGGAACTGGATAAGCACAAGA 59.435 45.455 0.00 0.00 0.00 3.02
824 992 2.972625 TCGGAACTGGATAAGCACAAG 58.027 47.619 0.00 0.00 0.00 3.16
825 993 3.410631 TTCGGAACTGGATAAGCACAA 57.589 42.857 0.00 0.00 0.00 3.33
850 1022 1.645710 GGTCAAAGAGTGGGAGGAGA 58.354 55.000 0.00 0.00 0.00 3.71
875 1047 2.275380 GGTGGGGATGTGCACAACC 61.275 63.158 32.09 32.09 38.00 3.77
884 1056 0.929244 AGGAAGGATTGGTGGGGATG 59.071 55.000 0.00 0.00 0.00 3.51
885 1057 2.605825 TAGGAAGGATTGGTGGGGAT 57.394 50.000 0.00 0.00 0.00 3.85
899 1084 2.754946 AAACGCGGATGACTTAGGAA 57.245 45.000 12.47 0.00 0.00 3.36
906 1095 1.395954 GGTAAGGAAAACGCGGATGAC 59.604 52.381 12.47 0.00 0.00 3.06
926 1115 6.201806 GCATCTACTAGTAGCTTTGTCAATGG 59.798 42.308 22.87 2.08 33.32 3.16
931 1120 6.137794 TGAGCATCTACTAGTAGCTTTGTC 57.862 41.667 22.87 15.35 35.36 3.18
938 1127 8.026607 GGAGCTAATTTGAGCATCTACTAGTAG 58.973 40.741 21.87 21.87 45.43 2.57
944 1134 6.874288 AATGGAGCTAATTTGAGCATCTAC 57.126 37.500 3.15 0.00 45.43 2.59
946 1136 5.451520 GCAAATGGAGCTAATTTGAGCATCT 60.452 40.000 26.90 0.00 44.30 2.90
953 1143 3.699067 CGAGGCAAATGGAGCTAATTTG 58.301 45.455 21.78 21.78 44.34 2.32
1043 1244 6.015918 AGACATTGACATAGATAGAGGAGGG 58.984 44.000 0.00 0.00 0.00 4.30
1058 1259 1.001641 AGGCAGGGCAGACATTGAC 60.002 57.895 0.00 0.00 0.00 3.18
1077 1278 1.534595 GTGAAGCAGGAAACAGAGCAG 59.465 52.381 0.00 0.00 0.00 4.24
1091 1292 3.137533 GGGCATTCAGAGATAGTGAAGC 58.862 50.000 0.00 0.00 37.35 3.86
1092 1293 4.412796 TGGGCATTCAGAGATAGTGAAG 57.587 45.455 0.00 0.00 37.35 3.02
1093 1294 4.711399 CATGGGCATTCAGAGATAGTGAA 58.289 43.478 0.00 0.00 38.28 3.18
1094 1295 3.495629 GCATGGGCATTCAGAGATAGTGA 60.496 47.826 0.00 0.00 40.72 3.41
1095 1296 2.812591 GCATGGGCATTCAGAGATAGTG 59.187 50.000 0.00 0.00 40.72 2.74
1096 1297 2.709934 AGCATGGGCATTCAGAGATAGT 59.290 45.455 0.00 0.00 44.61 2.12
1099 1300 2.750141 AAGCATGGGCATTCAGAGAT 57.250 45.000 0.00 0.00 44.61 2.75
1100 1301 2.519771 AAAGCATGGGCATTCAGAGA 57.480 45.000 0.00 0.00 44.61 3.10
1101 1302 3.604875 AAAAAGCATGGGCATTCAGAG 57.395 42.857 0.00 0.00 44.61 3.35
1121 1332 2.733858 GCGAAACCTGTGACAAAAGCAA 60.734 45.455 0.00 0.00 0.00 3.91
1122 1333 1.202245 GCGAAACCTGTGACAAAAGCA 60.202 47.619 0.00 0.00 0.00 3.91
1123 1334 1.065551 AGCGAAACCTGTGACAAAAGC 59.934 47.619 0.00 0.00 0.00 3.51
1237 1451 0.906066 GGGTTGGGGTTGTTGTTGTT 59.094 50.000 0.00 0.00 0.00 2.83
1238 1452 1.324005 CGGGTTGGGGTTGTTGTTGT 61.324 55.000 0.00 0.00 0.00 3.32
1239 1453 1.439644 CGGGTTGGGGTTGTTGTTG 59.560 57.895 0.00 0.00 0.00 3.33
1311 1528 1.069500 GTACATTTTTCGTGCGGCAGT 60.069 47.619 1.18 0.00 0.00 4.40
1404 1624 5.696724 ACATAGACAACACAGTAAGACTTGC 59.303 40.000 0.00 0.00 0.00 4.01
1443 1673 4.440525 CCATACATCCAGTTGAACAATGCC 60.441 45.833 0.00 0.00 0.00 4.40
1454 1684 5.431731 TGTTCCCTATTTCCATACATCCAGT 59.568 40.000 0.00 0.00 0.00 4.00
1455 1685 5.765182 GTGTTCCCTATTTCCATACATCCAG 59.235 44.000 0.00 0.00 0.00 3.86
1522 1755 9.356433 AGAAAATTTTTGATTTTGCCAAACTTG 57.644 25.926 4.63 0.00 33.74 3.16
1603 1875 0.790207 CTTTAAGCTTCGCTGACGCA 59.210 50.000 0.00 0.00 39.62 5.24
1606 1878 5.689819 TCAAAATCTTTAAGCTTCGCTGAC 58.310 37.500 0.00 0.00 39.62 3.51
1609 1881 6.500684 TCATCAAAATCTTTAAGCTTCGCT 57.499 33.333 0.00 0.00 42.56 4.93
1612 1884 9.460906 GGATCATCATCAAAATCTTTAAGCTTC 57.539 33.333 0.00 0.00 0.00 3.86
1615 1887 8.627403 TGAGGATCATCATCAAAATCTTTAAGC 58.373 33.333 5.84 0.00 42.56 3.09
1735 2007 2.899339 GCCTGCGAAGATGGCTCC 60.899 66.667 0.00 0.00 42.42 4.70
1756 2028 7.480107 AAACTCCTCCAGTTCCTCTACAGGA 62.480 48.000 0.00 0.00 45.32 3.86
1759 2031 3.544698 AACTCCTCCAGTTCCTCTACA 57.455 47.619 0.00 0.00 42.07 2.74
1761 2033 4.127918 TCAAACTCCTCCAGTTCCTCTA 57.872 45.455 0.00 0.00 45.32 2.43
1762 2034 2.977808 TCAAACTCCTCCAGTTCCTCT 58.022 47.619 0.00 0.00 45.32 3.69
1795 2067 2.770048 AGCTCCATTCCCCCTCCG 60.770 66.667 0.00 0.00 0.00 4.63
1819 2091 0.252421 TGATGCTGTCCAGAGGGTCT 60.252 55.000 0.00 0.00 34.93 3.85
1865 2137 0.920763 TTGGCCCTGATCCCATCACT 60.921 55.000 0.00 0.00 35.06 3.41
1867 2139 0.186630 CATTGGCCCTGATCCCATCA 59.813 55.000 0.00 0.00 37.76 3.07
2033 2305 3.552132 TCTGTTAACCACTGCAGTTCA 57.448 42.857 18.94 8.73 0.00 3.18
2034 2306 5.438761 AAATCTGTTAACCACTGCAGTTC 57.561 39.130 18.94 4.46 0.00 3.01
2035 2307 6.942576 AGATAAATCTGTTAACCACTGCAGTT 59.057 34.615 18.94 5.57 35.42 3.16
2037 2309 6.992063 AGATAAATCTGTTAACCACTGCAG 57.008 37.500 13.48 13.48 35.42 4.41
2038 2310 7.620880 AGTAGATAAATCTGTTAACCACTGCA 58.379 34.615 2.48 0.00 37.76 4.41
2039 2311 8.494016 AAGTAGATAAATCTGTTAACCACTGC 57.506 34.615 2.48 0.00 37.76 4.40
2040 2312 9.877178 AGAAGTAGATAAATCTGTTAACCACTG 57.123 33.333 2.48 0.00 37.76 3.66
2059 2351 8.680903 ACTGGAAATGCAATTCATTAGAAGTAG 58.319 33.333 16.10 3.20 44.23 2.57
2061 2353 7.363268 GGACTGGAAATGCAATTCATTAGAAGT 60.363 37.037 16.10 8.77 44.23 3.01
2065 2357 6.211587 TGGACTGGAAATGCAATTCATTAG 57.788 37.500 16.10 12.40 44.23 1.73
2069 2361 5.486735 AATTGGACTGGAAATGCAATTCA 57.513 34.783 16.10 0.27 42.37 2.57
2070 2362 5.391203 GCAAATTGGACTGGAAATGCAATTC 60.391 40.000 5.92 5.92 44.39 2.17
2071 2363 4.456566 GCAAATTGGACTGGAAATGCAATT 59.543 37.500 0.00 0.00 46.30 2.32
2072 2364 4.004982 GCAAATTGGACTGGAAATGCAAT 58.995 39.130 0.00 0.00 39.50 3.56
2073 2365 3.071312 AGCAAATTGGACTGGAAATGCAA 59.929 39.130 0.00 0.00 35.11 4.08
2074 2366 2.633967 AGCAAATTGGACTGGAAATGCA 59.366 40.909 0.00 0.00 35.11 3.96
2075 2367 3.323751 AGCAAATTGGACTGGAAATGC 57.676 42.857 0.00 0.00 0.00 3.56
2076 2368 5.649782 ACTAGCAAATTGGACTGGAAATG 57.350 39.130 0.00 0.00 0.00 2.32
2077 2369 6.670695 AAACTAGCAAATTGGACTGGAAAT 57.329 33.333 0.00 0.00 0.00 2.17
2078 2370 6.478512 AAAACTAGCAAATTGGACTGGAAA 57.521 33.333 0.00 0.00 0.00 3.13
2079 2371 6.547880 TGTAAAACTAGCAAATTGGACTGGAA 59.452 34.615 0.00 0.00 0.00 3.53
2080 2372 6.065374 TGTAAAACTAGCAAATTGGACTGGA 58.935 36.000 0.00 0.00 0.00 3.86
2094 2386 6.477033 CACCTACTGCTGCTATGTAAAACTAG 59.523 42.308 0.00 0.00 0.00 2.57
2095 2387 6.070995 ACACCTACTGCTGCTATGTAAAACTA 60.071 38.462 0.00 0.00 0.00 2.24
2096 2388 5.178797 CACCTACTGCTGCTATGTAAAACT 58.821 41.667 0.00 0.00 0.00 2.66
2104 2397 5.305386 TGAATGATACACCTACTGCTGCTAT 59.695 40.000 0.00 0.00 0.00 2.97
2105 2398 4.649218 TGAATGATACACCTACTGCTGCTA 59.351 41.667 0.00 0.00 0.00 3.49
2208 2530 7.827819 TCAAACGGATACAGATAAGAACAAG 57.172 36.000 0.00 0.00 0.00 3.16
2324 2646 4.096190 AGATATCATCACAAAGCCCCTG 57.904 45.455 5.32 0.00 0.00 4.45
2384 2706 3.457380 TCCTCAGAGGCTTATTCTGCAAT 59.543 43.478 12.26 0.00 41.41 3.56
2411 2733 8.131731 GGGATAGAAAAATGTATGTCAAGCTTC 58.868 37.037 0.00 0.00 0.00 3.86
2423 2745 7.373617 ACAAACCTTTGGGATAGAAAAATGT 57.626 32.000 2.94 0.00 42.34 2.71
2464 2786 2.421399 GCAAGGGCTTCAGATGGGC 61.421 63.158 0.00 0.00 36.96 5.36
2468 2790 1.000396 GTGGGCAAGGGCTTCAGAT 60.000 57.895 0.00 0.00 40.87 2.90
2470 2792 1.114722 TTTGTGGGCAAGGGCTTCAG 61.115 55.000 0.00 0.00 40.87 3.02
2471 2793 0.689080 TTTTGTGGGCAAGGGCTTCA 60.689 50.000 0.00 0.00 40.87 3.02
2472 2794 0.033920 CTTTTGTGGGCAAGGGCTTC 59.966 55.000 0.00 0.00 40.87 3.86
2473 2795 2.043604 GCTTTTGTGGGCAAGGGCTT 62.044 55.000 0.00 0.00 40.87 4.35
2482 2804 1.691196 TCAAGGAGTGCTTTTGTGGG 58.309 50.000 0.00 0.00 0.00 4.61
2492 2814 7.219484 ACAAGGTATTCAATTTCAAGGAGTG 57.781 36.000 0.00 0.00 0.00 3.51
2494 2816 7.885297 TCAACAAGGTATTCAATTTCAAGGAG 58.115 34.615 0.00 0.00 0.00 3.69
2496 2818 9.492973 AAATCAACAAGGTATTCAATTTCAAGG 57.507 29.630 0.00 0.00 0.00 3.61
2504 2826 6.041409 TCCTGCAAAATCAACAAGGTATTCAA 59.959 34.615 0.00 0.00 0.00 2.69
2536 2859 5.048013 CCCCTGGTTTAAATCTTTGTCAGAC 60.048 44.000 0.00 0.00 32.83 3.51
2587 2910 6.092807 GGCGAACTTCTTCATTAGAAACTGAT 59.907 38.462 0.00 0.00 42.19 2.90
2647 2970 5.826643 ACAAAATTTGGGAGTAGCATCCTA 58.173 37.500 10.71 0.00 39.50 2.94
2680 3003 7.657336 TGCATTTTCCAAGTAGAAACCTTAAG 58.343 34.615 0.00 0.00 35.53 1.85
2692 3015 4.523943 TGTATGAAGCTGCATTTTCCAAGT 59.476 37.500 13.82 0.00 0.00 3.16
2724 3047 6.012658 TCAAACAGCTTGAATGAATACCAC 57.987 37.500 0.00 0.00 41.21 4.16
2936 3259 9.224267 CAGGCATATCTACTGCTTAAACAATAT 57.776 33.333 0.00 0.00 39.60 1.28
2937 3260 8.210946 ACAGGCATATCTACTGCTTAAACAATA 58.789 33.333 0.00 0.00 39.60 1.90
2940 3263 5.989477 ACAGGCATATCTACTGCTTAAACA 58.011 37.500 0.00 0.00 39.60 2.83
2943 3266 5.296780 GCAAACAGGCATATCTACTGCTTAA 59.703 40.000 0.00 0.00 39.60 1.85
2975 3306 5.569355 TGTCCAAAATTCAAGGAGCATCTA 58.431 37.500 0.00 0.00 33.73 1.98
2981 3312 5.261209 TGTGTTGTCCAAAATTCAAGGAG 57.739 39.130 0.00 0.00 30.78 3.69
3117 3451 3.648545 GGAGAATGCCTATAACCTCTGGT 59.351 47.826 0.00 0.00 37.65 4.00
3136 3470 1.519455 GGCGATCCAACGTGAGGAG 60.519 63.158 14.45 4.62 38.83 3.69
3137 3471 0.681887 TAGGCGATCCAACGTGAGGA 60.682 55.000 11.90 11.90 39.97 3.71
3138 3472 0.389391 ATAGGCGATCCAACGTGAGG 59.611 55.000 0.00 0.00 35.59 3.86
3170 3504 4.225267 ACTGATCCAGTAAAAGTACCTGGG 59.775 45.833 13.25 2.70 43.46 4.45
3279 3613 2.438021 TGGACTACCATATTGAGCCCAC 59.562 50.000 0.00 0.00 41.77 4.61
3333 3667 3.325425 TCATTCCGTTTCCAGTAGGTGAA 59.675 43.478 0.00 0.00 35.89 3.18
3438 3772 5.784750 TGCTGTTTGAGAATACTTGATCG 57.215 39.130 0.00 0.00 0.00 3.69
3477 3811 1.532868 GACTGTGAATGCTGAAACGCT 59.467 47.619 0.00 0.00 0.00 5.07
3648 3982 3.854669 CCCTGAGGGCGGCTACTG 61.855 72.222 3.66 7.32 35.35 2.74
3828 4162 1.613437 CCGCCAATGTTCCCCATATTC 59.387 52.381 0.00 0.00 31.97 1.75
3964 4298 2.332063 CCAAGTCTTGGCGATGGTAT 57.668 50.000 18.66 0.00 45.17 2.73
4020 4354 4.523083 TGTCAAGTCCATAATAACCAGGC 58.477 43.478 0.00 0.00 0.00 4.85
4065 4399 2.954753 GCTGTCAACTCGGCGGTTG 61.955 63.158 25.31 25.31 45.42 3.77
4197 4531 7.467131 GCAAACAAGAAAACATGGCATTAAACT 60.467 33.333 0.00 0.00 0.00 2.66
4198 4532 6.632434 GCAAACAAGAAAACATGGCATTAAAC 59.368 34.615 0.00 0.00 0.00 2.01
4199 4533 6.541641 AGCAAACAAGAAAACATGGCATTAAA 59.458 30.769 0.00 0.00 0.00 1.52
4201 4535 5.609423 AGCAAACAAGAAAACATGGCATTA 58.391 33.333 0.00 0.00 0.00 1.90
4202 4536 4.453751 AGCAAACAAGAAAACATGGCATT 58.546 34.783 0.00 0.00 0.00 3.56
4203 4537 4.060205 GAGCAAACAAGAAAACATGGCAT 58.940 39.130 0.00 0.00 0.00 4.40
4204 4538 3.132646 AGAGCAAACAAGAAAACATGGCA 59.867 39.130 0.00 0.00 0.00 4.92
4205 4539 3.721035 AGAGCAAACAAGAAAACATGGC 58.279 40.909 0.00 0.00 0.00 4.40
4212 4550 9.195411 CAAGCAATATAAAGAGCAAACAAGAAA 57.805 29.630 0.00 0.00 0.00 2.52
4220 4558 8.469200 ACAATTAGCAAGCAATATAAAGAGCAA 58.531 29.630 0.00 0.00 0.00 3.91
4241 4581 5.304357 CAGGAAAAACTGGGTTAGGACAATT 59.696 40.000 0.00 0.00 34.84 2.32
4242 4582 4.832823 CAGGAAAAACTGGGTTAGGACAAT 59.167 41.667 0.00 0.00 34.84 2.71
4250 4590 3.390967 CCCAATTCAGGAAAAACTGGGTT 59.609 43.478 11.05 0.00 37.77 4.11
4253 4593 4.220602 CCTACCCAATTCAGGAAAAACTGG 59.779 45.833 0.00 0.00 38.98 4.00
4270 4610 3.744530 GCATCTTGGATGTGTACCTACCC 60.745 52.174 8.93 0.00 0.00 3.69
4272 4612 4.408182 AGCATCTTGGATGTGTACCTAC 57.592 45.455 8.93 0.00 0.00 3.18
4382 4722 4.601019 AGTCGCTGAAAAACAACAAGATG 58.399 39.130 0.00 0.00 0.00 2.90
4385 4725 6.690957 TGAATAAGTCGCTGAAAAACAACAAG 59.309 34.615 0.00 0.00 0.00 3.16
4386 4726 6.470877 GTGAATAAGTCGCTGAAAAACAACAA 59.529 34.615 0.00 0.00 33.66 2.83
4399 4739 6.363626 CAGTACTGGATATGTGAATAAGTCGC 59.636 42.308 15.49 0.00 37.26 5.19
4422 4762 9.586435 GGGGAAATGAAGAAACAATTATTACAG 57.414 33.333 0.00 0.00 0.00 2.74
4437 4777 1.821136 GTTCTGCAGGGGGAAATGAAG 59.179 52.381 15.13 0.00 0.00 3.02
4440 4780 1.631405 TTGTTCTGCAGGGGGAAATG 58.369 50.000 15.13 0.00 0.00 2.32
4441 4781 2.397044 TTTGTTCTGCAGGGGGAAAT 57.603 45.000 15.13 0.00 0.00 2.17
4444 4784 0.899717 GCATTTGTTCTGCAGGGGGA 60.900 55.000 15.13 0.00 39.46 4.81
4445 4785 1.186917 TGCATTTGTTCTGCAGGGGG 61.187 55.000 15.13 0.00 44.30 5.40
4469 4813 3.063316 TCATGTTGATGAACGCATAACCG 59.937 43.478 0.00 0.00 35.55 4.44
4484 4828 2.620115 GTGCACAGGGGATATCATGTTG 59.380 50.000 13.17 0.13 0.00 3.33
4719 5063 3.055094 GGATCCTACCATACGCCAATGAT 60.055 47.826 3.84 0.00 0.00 2.45
4728 5072 2.907042 CCTTCCCTGGATCCTACCATAC 59.093 54.545 14.23 0.00 39.34 2.39
4870 5214 3.084039 TGCCCTTTCACTTTCAGCATAG 58.916 45.455 0.00 0.00 0.00 2.23
4871 5215 3.153369 TGCCCTTTCACTTTCAGCATA 57.847 42.857 0.00 0.00 0.00 3.14
4889 5233 7.541783 TGCAATACAAGTTCATAAAACAGATGC 59.458 33.333 0.00 0.00 0.00 3.91
4914 5258 3.304928 GCCAGAGAAGGACATGTTTTGTG 60.305 47.826 0.00 0.00 39.18 3.33
4923 5267 3.582647 TGATTTAGTGCCAGAGAAGGACA 59.417 43.478 0.00 0.00 0.00 4.02
4925 5269 4.225942 ACATGATTTAGTGCCAGAGAAGGA 59.774 41.667 0.00 0.00 0.00 3.36
4930 5274 5.525378 GGAGTAACATGATTTAGTGCCAGAG 59.475 44.000 0.00 0.00 0.00 3.35
4932 5276 4.576463 GGGAGTAACATGATTTAGTGCCAG 59.424 45.833 13.44 0.00 40.76 4.85
4941 5285 4.971282 TGGATCAGAGGGAGTAACATGATT 59.029 41.667 0.00 0.00 0.00 2.57
4943 5287 3.994317 TGGATCAGAGGGAGTAACATGA 58.006 45.455 0.00 0.00 0.00 3.07
4944 5288 4.970860 ATGGATCAGAGGGAGTAACATG 57.029 45.455 0.00 0.00 0.00 3.21
4945 5289 7.958583 ACTAATATGGATCAGAGGGAGTAACAT 59.041 37.037 0.00 0.00 0.00 2.71
4946 5290 7.306013 ACTAATATGGATCAGAGGGAGTAACA 58.694 38.462 0.00 0.00 0.00 2.41
4947 5291 7.784470 ACTAATATGGATCAGAGGGAGTAAC 57.216 40.000 0.00 0.00 0.00 2.50
4949 5293 9.702253 GATAACTAATATGGATCAGAGGGAGTA 57.298 37.037 0.00 0.00 0.00 2.59
4950 5294 8.180165 TGATAACTAATATGGATCAGAGGGAGT 58.820 37.037 0.00 0.00 0.00 3.85
4951 5295 8.474025 GTGATAACTAATATGGATCAGAGGGAG 58.526 40.741 0.00 0.00 0.00 4.30
4952 5296 8.180165 AGTGATAACTAATATGGATCAGAGGGA 58.820 37.037 0.00 0.00 0.00 4.20
4953 5297 8.256605 CAGTGATAACTAATATGGATCAGAGGG 58.743 40.741 0.00 0.00 0.00 4.30
4954 5298 9.029368 TCAGTGATAACTAATATGGATCAGAGG 57.971 37.037 0.00 0.00 0.00 3.69
4972 5316 8.515414 CGTCTAGATACATCCATTTCAGTGATA 58.485 37.037 0.00 0.00 0.00 2.15
4973 5317 7.014711 ACGTCTAGATACATCCATTTCAGTGAT 59.985 37.037 0.00 0.00 0.00 3.06
4974 5318 6.321435 ACGTCTAGATACATCCATTTCAGTGA 59.679 38.462 0.00 0.00 0.00 3.41
4975 5319 6.507900 ACGTCTAGATACATCCATTTCAGTG 58.492 40.000 0.00 0.00 0.00 3.66
4976 5320 6.716934 ACGTCTAGATACATCCATTTCAGT 57.283 37.500 0.00 0.00 0.00 3.41
4977 5321 9.698309 AAATACGTCTAGATACATCCATTTCAG 57.302 33.333 0.00 0.00 0.00 3.02
4978 5322 9.692749 GAAATACGTCTAGATACATCCATTTCA 57.307 33.333 0.00 0.00 31.94 2.69
4979 5323 9.692749 TGAAATACGTCTAGATACATCCATTTC 57.307 33.333 0.00 0.00 32.15 2.17
4980 5324 9.698309 CTGAAATACGTCTAGATACATCCATTT 57.302 33.333 0.00 0.00 0.00 2.32
4981 5325 8.861086 ACTGAAATACGTCTAGATACATCCATT 58.139 33.333 0.00 0.00 0.00 3.16
4982 5326 8.300286 CACTGAAATACGTCTAGATACATCCAT 58.700 37.037 0.00 0.00 0.00 3.41
4983 5327 7.649057 CACTGAAATACGTCTAGATACATCCA 58.351 38.462 0.00 0.00 0.00 3.41
4984 5328 6.583050 GCACTGAAATACGTCTAGATACATCC 59.417 42.308 0.00 0.00 0.00 3.51
4985 5329 7.364200 AGCACTGAAATACGTCTAGATACATC 58.636 38.462 0.00 0.00 0.00 3.06
4986 5330 7.278461 AGCACTGAAATACGTCTAGATACAT 57.722 36.000 0.00 0.00 0.00 2.29
4987 5331 6.694877 AGCACTGAAATACGTCTAGATACA 57.305 37.500 0.00 0.00 0.00 2.29
4988 5332 8.085720 TCTAGCACTGAAATACGTCTAGATAC 57.914 38.462 0.00 0.00 29.74 2.24
4989 5333 8.850007 ATCTAGCACTGAAATACGTCTAGATA 57.150 34.615 13.10 0.00 39.33 1.98
4990 5334 7.753309 ATCTAGCACTGAAATACGTCTAGAT 57.247 36.000 10.29 10.29 37.49 1.98
4991 5335 7.713942 TGTATCTAGCACTGAAATACGTCTAGA 59.286 37.037 0.00 0.00 36.50 2.43
4992 5336 7.862648 TGTATCTAGCACTGAAATACGTCTAG 58.137 38.462 0.00 0.00 0.00 2.43
4993 5337 7.797038 TGTATCTAGCACTGAAATACGTCTA 57.203 36.000 0.00 0.00 0.00 2.59
4994 5338 6.694877 TGTATCTAGCACTGAAATACGTCT 57.305 37.500 0.00 0.00 0.00 4.18
4995 5339 6.583050 GGATGTATCTAGCACTGAAATACGTC 59.417 42.308 0.00 8.28 37.78 4.34
4996 5340 6.448006 GGATGTATCTAGCACTGAAATACGT 58.552 40.000 0.00 0.00 0.00 3.57
4997 5341 5.569441 CGGATGTATCTAGCACTGAAATACG 59.431 44.000 0.00 0.00 0.00 3.06
4998 5342 6.448006 ACGGATGTATCTAGCACTGAAATAC 58.552 40.000 0.00 0.00 0.00 1.89
4999 5343 6.650427 ACGGATGTATCTAGCACTGAAATA 57.350 37.500 0.00 0.00 0.00 1.40
5000 5344 5.537300 ACGGATGTATCTAGCACTGAAAT 57.463 39.130 0.00 0.00 0.00 2.17
5001 5345 5.339008 AACGGATGTATCTAGCACTGAAA 57.661 39.130 0.00 0.00 0.00 2.69
5002 5346 5.105513 TCAAACGGATGTATCTAGCACTGAA 60.106 40.000 0.00 0.00 0.00 3.02
5003 5347 4.401202 TCAAACGGATGTATCTAGCACTGA 59.599 41.667 0.00 0.00 0.00 3.41
5004 5348 4.682787 TCAAACGGATGTATCTAGCACTG 58.317 43.478 0.00 0.00 0.00 3.66
5005 5349 5.339008 TTCAAACGGATGTATCTAGCACT 57.661 39.130 0.00 0.00 0.00 4.40
5006 5350 5.753438 TCATTCAAACGGATGTATCTAGCAC 59.247 40.000 0.00 0.00 0.00 4.40
5007 5351 5.753438 GTCATTCAAACGGATGTATCTAGCA 59.247 40.000 0.00 0.00 0.00 3.49
5008 5352 5.753438 TGTCATTCAAACGGATGTATCTAGC 59.247 40.000 0.00 0.00 0.00 3.42
5009 5353 7.770801 TTGTCATTCAAACGGATGTATCTAG 57.229 36.000 0.00 0.00 32.64 2.43
5010 5354 8.731275 AATTGTCATTCAAACGGATGTATCTA 57.269 30.769 0.00 0.00 39.62 1.98
5011 5355 7.630242 AATTGTCATTCAAACGGATGTATCT 57.370 32.000 0.00 0.00 39.62 1.98
5012 5356 9.950680 ATTAATTGTCATTCAAACGGATGTATC 57.049 29.630 0.00 0.00 39.62 2.24
5015 5359 9.734620 CATATTAATTGTCATTCAAACGGATGT 57.265 29.630 0.00 0.00 39.62 3.06
5016 5360 9.184062 CCATATTAATTGTCATTCAAACGGATG 57.816 33.333 0.00 0.00 39.62 3.51
5017 5361 9.130661 TCCATATTAATTGTCATTCAAACGGAT 57.869 29.630 0.00 0.00 39.62 4.18
5018 5362 8.512966 TCCATATTAATTGTCATTCAAACGGA 57.487 30.769 0.00 0.00 39.62 4.69
5019 5363 9.398170 GATCCATATTAATTGTCATTCAAACGG 57.602 33.333 0.00 0.00 39.62 4.44
5020 5364 9.949174 TGATCCATATTAATTGTCATTCAAACG 57.051 29.630 0.00 0.00 39.62 3.60
5024 5368 9.511272 CCTCTGATCCATATTAATTGTCATTCA 57.489 33.333 0.00 0.00 0.00 2.57
5025 5369 8.954350 CCCTCTGATCCATATTAATTGTCATTC 58.046 37.037 0.00 0.00 0.00 2.67
5026 5370 8.672329 TCCCTCTGATCCATATTAATTGTCATT 58.328 33.333 0.00 0.00 0.00 2.57
5027 5371 8.223378 TCCCTCTGATCCATATTAATTGTCAT 57.777 34.615 0.00 0.00 0.00 3.06
5028 5372 7.293299 ACTCCCTCTGATCCATATTAATTGTCA 59.707 37.037 0.00 0.00 0.00 3.58
5029 5373 7.684529 ACTCCCTCTGATCCATATTAATTGTC 58.315 38.462 0.00 0.00 0.00 3.18
5030 5374 7.639062 ACTCCCTCTGATCCATATTAATTGT 57.361 36.000 0.00 0.00 0.00 2.71
5037 5381 9.653516 CAGTTATATACTCCCTCTGATCCATAT 57.346 37.037 0.00 0.00 33.85 1.78
5038 5382 8.624670 ACAGTTATATACTCCCTCTGATCCATA 58.375 37.037 0.00 0.00 33.85 2.74
5039 5383 7.483018 ACAGTTATATACTCCCTCTGATCCAT 58.517 38.462 0.00 0.00 33.85 3.41
5040 5384 6.864421 ACAGTTATATACTCCCTCTGATCCA 58.136 40.000 0.00 0.00 33.85 3.41
5041 5385 7.607250 CAACAGTTATATACTCCCTCTGATCC 58.393 42.308 0.00 0.00 33.85 3.36
5042 5386 7.093992 GCAACAGTTATATACTCCCTCTGATC 58.906 42.308 0.00 0.00 33.85 2.92
5043 5387 6.554982 TGCAACAGTTATATACTCCCTCTGAT 59.445 38.462 0.00 0.00 33.85 2.90
5044 5388 5.897250 TGCAACAGTTATATACTCCCTCTGA 59.103 40.000 0.00 0.00 33.85 3.27
5045 5389 6.161855 TGCAACAGTTATATACTCCCTCTG 57.838 41.667 0.00 0.00 33.85 3.35
5046 5390 6.611642 TCTTGCAACAGTTATATACTCCCTCT 59.388 38.462 0.00 0.00 33.85 3.69
5047 5391 6.817184 TCTTGCAACAGTTATATACTCCCTC 58.183 40.000 0.00 0.00 33.85 4.30
5048 5392 6.808321 TCTTGCAACAGTTATATACTCCCT 57.192 37.500 0.00 0.00 33.85 4.20
5049 5393 9.726438 ATTATCTTGCAACAGTTATATACTCCC 57.274 33.333 0.00 0.00 33.85 4.30
5078 5422 6.017109 ACGTGTCAAAATAAGATGCTGAGTTT 60.017 34.615 0.00 0.00 0.00 2.66
5086 5430 5.688823 TGCTTCACGTGTCAAAATAAGATG 58.311 37.500 16.51 0.00 0.00 2.90
5091 5435 4.513318 TGTCATGCTTCACGTGTCAAAATA 59.487 37.500 16.51 0.00 36.60 1.40
5098 5442 1.069204 ACTCTGTCATGCTTCACGTGT 59.931 47.619 16.51 0.00 36.60 4.49
5245 5591 7.987458 TCCTGAGTTTCATTCATGGTATTAGAC 59.013 37.037 0.00 0.00 0.00 2.59
5367 5713 1.134965 CCCCGGATATCTTGATCTCGC 60.135 57.143 0.73 0.00 0.00 5.03
5814 6166 0.759346 GGCATCACCCGATTAGACCT 59.241 55.000 0.00 0.00 0.00 3.85
5855 6207 2.710220 TGACTCACAATGCACAATGC 57.290 45.000 0.00 0.00 45.29 3.56
5949 6307 8.918116 GGATCAGGTAGATATATGAGCATTGTA 58.082 37.037 0.00 0.00 37.00 2.41
6008 6651 1.531578 GTGAACTTCCAAGACGAAGGC 59.468 52.381 0.00 0.00 43.01 4.35
6009 6652 2.802816 CAGTGAACTTCCAAGACGAAGG 59.197 50.000 0.00 0.00 43.01 3.46
6030 6673 7.152645 TCTAACTAGTTCATTGTCCACAACTC 58.847 38.462 12.39 0.00 38.86 3.01
6100 6743 7.332430 CAGGACATTGCAATTTCAAATATGTGT 59.668 33.333 23.28 10.20 0.00 3.72
6117 6792 6.040391 TCAAACCCTAAAGTTTCAGGACATTG 59.960 38.462 10.11 10.82 37.87 2.82
6130 6805 5.534654 TGGAACAATCACTCAAACCCTAAAG 59.465 40.000 0.00 0.00 31.92 1.85
6153 6828 2.707791 ACCATGATCACCTATGGGAGTG 59.292 50.000 15.76 0.00 46.43 3.51
6236 6912 3.602483 TGCGGGAGTTAACTTTGTATCC 58.398 45.455 10.02 5.19 0.00 2.59
6255 6931 1.461127 GTGTGAGTTGAGGTTCGATGC 59.539 52.381 0.00 0.00 0.00 3.91
6285 6961 5.428496 TTGATATAGGTGTACTTCGTCGG 57.572 43.478 0.00 0.00 0.00 4.79
6304 6981 3.253188 GCTGTAGCCAGATTTGTGTTTGA 59.747 43.478 0.00 0.00 41.50 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.