CLUSTAL X (1.81) multiple sequence alignment input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 AGACGGATGGCCTCAATCATCATACCCGTCCCTTTCGATCCC--AC---T chr7A_2 -GACGGATGGCCTCAATCATCATACCCGTCCCTATCCCACTACTACTACT chr4A_5 ----GGATGGCCTCAATCATCATACCCGTCCCTTTCGATCCC--ACTACT SNPs S------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 ACTACTACTTCCCATATTAAAAATTTCTCCTTTTTTATTTTTAAT----- chr7A_2 ACTATTACTTCCCATTTTTATTTCTTTTCTTAAAAAATGGGATG-----G chr4A_5 ACTACTACTTCCCATTTTTTTATATTTCTTTTCTTTAATTCTTTCAATAG SNPs ---------------S--S-S-SS--S--S--S-------S-SSS----- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 --TTTTAATTTTGTGTGGATAATCATTACTAATA----TTTTTTTCTCGG chr7A_2 GATTATTATATTTTGTGGATAATCATTAAGTATATTGTTTTTTTTCTGGG chr4A_5 GATTATTATATTTTGTGGATAATCATTAACTT-----TTTTTTTTCTTGG SNPs ----S-S--S--S---------------SSS----------------S-- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 CGTCCAC---------TACCAATTGCGTCTGCTTGCTTGGGCCAGTAAAA chr7A_2 CGTCCAG---------TACCCAATTGCGTCGCTTGCTTGGGCCAGTAAAA chr4A_5 CGTCCACCACTAGTACTACCAATGGCGTCTGCTTGCTTGGGCCAGTAAAA SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 AACCCAT-------TTTTATTT-----CTCTCTTGATG-ATTCACTAGTG chr7A_2 AACCCAT-------TTTTATTTTATTTCTCTCTTGATG-ATTCACTAGTG chr4A_5 AACCCAATTTTTTATTTTATTTTATTTCTCTCTTGATTCATTCACTAGTA SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 GACGGAG----TATAAAAAACAAGAGAGAGAGCGC--------------- chr7A_2 GATGGAGTATATATAAAAAACAAGAGAGAGACGAGAG------------- chr4A_5 ---GGAG----TATAAAAAACAAGAGAGAGAGAGAGAGAGAGAGAGAGAG SNPs --S-----------------------------S-S--------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 -----------AAGAAAGAAAAGATTTCGCCTTTCTCTCTCTCTCTCTTT chr7A_2 -----------AAGAGAGAAAAGATTTCGCCTTTCCCCTCGTCTCCCAAG chr4A_5 AGAAGAGAAGAAAGAAAGAAAAGATTTCGCCTTTCTCTCTT--------- SNPs ----------------------------------------S----S-SSS forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 CCCCTCCCACACCTCCCCTCATCGCGCGAACCAACGCAGCGCAGCACGGG chr7A_2 AAATCGCTCCG----------TCCCGCGAACCAACGCA--GCAGCACGCC chr4A_5 -------------TCCCCTCATCGCGCGAACCAACGCAGCGCAGCACGCC SNPs SSSSSS-SS-SSS-----------------------------------SS forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 CGGGCGGGCGGAGACCAAGGCGACGAGGGGACAAGGGATTTCCCCG---- chr7A_2 CG---GGCCGGAGACCAAGGCGAAGAGGGATT------------------ chr4A_5 CG---GGCCGGAGACCAAGGCCACCAGCGGAGAAGGGACTTCTCCGGCCG SNPs --SSS--S-----------------------S------S---S------- forward_443 -----------------------CGAGGGGACAAGGGATTTCC------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 --GCCGCCGCCGATTCAGTCCAGCAGCTAGGGTTCCTT-----CCCCGCC chr7A_2 ---------CCGATTCAGTCCAGCTGCTAGGGTTCC---CCCGCCCCGCC chr4A_5 CCGCCGCCGCCGATTCAGTCCACCAGCTAGGGTTCCTTGCCCACCCCGCC SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 GCCGGAGGCGCCAGGCGCTAGGTCAGTCGGGTTCTTTCTTGGCCCCCAAT chr7A_2 GCCGGAGGCGCCAGG-------TCAGTCGGCTTCTTTCTTGGCCCCCCAA chr4A_5 GCCGGAGGCGCCAGGCGCTAGGTCAGTCGGGGTTCTTGG----CCCCCAA SNPs -----------------------------------------------S-S forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 TCTTCC-----------------TGGGTGGGCGGGTTCTTGATGGGTTTA chr7A_2 TTCTTCT--------TCCGTTGGTGGGTGGGTGGGTTCTTGATGGGTTTA chr4A_5 TTCTTCCTCCCTGGGTCCGTGGGTGGGTGGGTGGGTTCTTGATGGGTTTA SNPs -SS-S--------------------------S------------------ forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 T--TACTAATCGAATTTGCGCCGCCTGATCCT----TCTCCGGTTACTTA chr7A_2 T--TACTAGTCTGATCG-------------------TCTCCGGTTACTCA chr4A_5 TATTACTAATCGAATTCGCGCCGCCTGGTCGTCTTCTCCCCGGTTACATA SNPs ----------------S----------S--S------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 GGGCTTGTTAATCTTCCCTGATTTGATTGGCTTTCTTACTTCCCTGATTT chr7A_2 GGGCTTGTTAATCTTCCCTGATTTGATTGCCTTCCTC------------- chr4A_5 GGCCTTGTTAATCT---CTGATTTCATTGCCTTTCTC------------- SNPs -----------------------------S------SSSSSSSSSSSSSS forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 AATCTCGCCATGAATGGACG---------AATTCGAGCTCTCTTACTTGG chr7A_2 --TCTCCCCATCCATGAATGGACCGGAACAATTCCAGCTCTCTTACTTGC chr4A_5 --TCTCGCCATGAATGGACG---------AATTCGAGCTCTCTTACTCCC SNPs SS-----------------------------------------------S forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 CAATAAGGTCGTCTCGTCTCTCTCCTTCCCAATCTACTACTCGTACTTGG chr7A_2 CAATAAGGTCGTATCTCCTTGATG-TTCCCAATCTACTTGTCCTACTTGG chr4A_5 CAACAAGGTCGTCTCCCTC----G-TTCCCAATCTACAACTCGTAGTTGG SNPs ---------------SS--SSS-SS------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 GCTGGATCGTTGATT-----------------------GATTAGATTAGA chr7A_2 GC------------------------------CCTCTAGATTGGATTGGA chr4A_5 GCGGGATCGTTGACGCCGCCGCTCCCTCCCTTCCTATAGATTATATTAGA SNPs --S----------SS----------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 TTAGATTAGATTGGTTG-TTGATTGATTCATCGTGGGTGGCCCCTGTT-- chr7A_2 TTGGATTGGATTGATTGATTTC----TTGATCGTGGCCAGGGTGGGTTCG chr4A_5 TTAGATTAGATTGATTGGTTGGTTGGTTGATCGTGCGTAGGGTGGGTGGG SNPs -------------S-------S---S--S---------S-SSSSS----- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 --------------------------GCCGCCGGTATTTTCGTTTTAGGG chr7A_2 GTTTCGT------------------------------------------- chr4A_5 GTAATCCCTCCCTCCCTCCCCTGTTAGCCGCCGCTATTTTCGTTTCCGGG SNPs ---------------------------------S-----------SS--- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 GGTCAAAGTTGGTTGCT----TCCTTCCTTCTTTGTTTCCTCTTGTGCTT chr7A_2 ----------------TTCCTTCCATCCTTCCC----------TGTGCTT chr4A_5 GGTCAAAGTTCGTTGCTTCCATCCTTCCTTCCC----------TGTGCTT SNPs ----------S--------------------SSSSSSSSSSSS------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 ATCCAGTT----CCGAAATACTCTCCTCCCACTCTTTGACCCGGTTGGTT chr7A_2 ATCCAGTT----CCGAAATAC---------ACTCTTTGACCCGGTTTGTT chr4A_5 ATCCAGTTACCTCCGAAATACACTCCTCCCACTCTTTGACCCGGTTCCTT SNPs ---------------------S------------------------S--- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 GTGCACA-------------TCCCCACCAATCCT----TCCTAAGTCATC chr7A_2 CTTCAGTTACCTCCTTCCTTCCTTCCTTCCCCCACCAATCCTAATTCATC chr4A_5 GTGCAGTTACCCATTCCTTCTCCCCACCAATCCAAATTCATTCCCTGTT- SNPs -----SS--------------------------S----------S----- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 CGCGTTTTCCTTACCCATTGACAAAGCT-ACTAGTAGATGCTCAAATTAG chr7A_2 CGCGTTTTCCCCATTGACATACACACATAACTACTTGATGCTAAAATTAG chr4A_5 ----------TTCCACATTCACAAAGGT-ACTACTTGATGCTAAAATTAG SNPs --------------S----S------S------S-S------S------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -----------------------------------------------ATG chr7D_1_TraesCS7D01G003000 ----CTCCATTTGCCTCGCAGGTGCCCCTCCC----CGAATGCAGTGATG chr7A_2 ----CTCCATTTGCTT-GCAGGTGCCCATCCC----CGAATGCACTGATG chr4A_5 AGAGCTCCATTTGCTT-GCAGGTGCCCCTCCCTCCCCGAATGCAGTGATG SNPs --------------S-S--------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 GACCGATCGCCGGCACCTCTCAGCCCACCAGGT---CTCTGCTCCCTCCT chr7D_1_TraesCS7D01G003000 GACCGATCGCCGGCACCTCTCAGCCCACCAGGT---CTCTGCTCCCTCCT chr7A_2 GACCGATCGCCGGCACCTCTCAGCCCACCAGGTAGGCTCTGCTTCCTCCT chr4A_5 GACCGATCGCCGGCACCTCTCAGCCCACCAGGTACTGCTCATCTCCTGCT SNPs -------------------------------------------S------ forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CTATCTATGTCAATGTCTGCCCTGCCTCTGCTCTGTTTCCTGCTTCACTA chr7D_1_TraesCS7D01G003000 CTATCTATGTCAATGTCTGCCCTGCCTCTGCTCTGTTTCCTGCTTCACTA chr7A_2 CTATCTATCTCAATGTCTGCCCTGCCTTTGCTCTGTTTCCT---CTGCTC chr4A_5 ACCTCTGTCTCAATGTCTGCCCTGCATTTGCTTTGCTCTGTTTCCTGCTC SNPs --------S------------------S-------------SSSSSS--S forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 ----------------------TGCCTCTGCTCTGTTTCCTG-------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TCTC-------TGA---ATGCCCATGCTTTTTTGC---TTTTGTCACAGG chr7D_1_TraesCS7D01G003000 TCTC-------TGA---ATGCCCATGCTTTTTTGC---TTTTGTCACAGG chr7A_2 CACTATCTGAATTATTAATATCTCTGCTTCTGCTCTTTTTCTGTTACAGG chr4A_5 CACTATCTGAATTA---ATGTCTCTGCTTTTGCTT---TCTTGTGACAGG SNPs SSSS--------S-------S-SS-------SSS----------S----- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TTTCGCTGTGCCGCTCGCCGTCAAGAAGCGGCAGCAGGCGGCGCCAGGCT chr7D_1_TraesCS7D01G003000 TTTCGCTGTGCCGCTCGCCGTCAAGAAGCGGCAGCAGGCGGCGCCAGGCT chr7A_2 TTTCGCTGTGCCGCTCGCCGTCAAGAAGCGGCAGCAGGCGGCGCCGGGCT chr4A_5 TTTTGCTGTGCCGCTCGCCGTCAAGAAGCGGCAGCAGGCGCCACCAGGTT SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 ACAGCAGCAGCAGCAGCCCGTGGGGAGTCCCTCCGGCGCCGCCCCTCACC chr7D_1_TraesCS7D01G003000 ACAGCAGCAGCAGCAGCCCGTGGGGAGTCCCTCCGGCGCCGCCCCTCACC chr7A_2 ACAGCAGCAGCAGCAGCCCGTGGGGAGTCCCTCCGGCGCCGCCCCTGACA chr4A_5 A---------CAGCAGCCCGTGGGGAGCCCCTCCGGCGCCGCCCCTCACC SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 AACAACAACAACCCCAACCCGCCCAATGGCCTCAGAGCA---GGCGACAC chr7D_1_TraesCS7D01G003000 AACAACAACAACCCCAACCCGCCCAATGGCCTCAGAGCA---GGCGACAC chr7A_2 ---AACAACAACCCCAACCCGCCCAATGGCCTCAGAGC---CGGCGACAC chr4A_5 ---AACAACAACCCCAACCCGCCCAATGGCCTCAGGGGAGGCGGCGACAC SNPs SSS----------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CAGCATCTTCTCCACCTCGCTGCCCGTACTGCCGCACGAAAAATGTACGC chr7D_1_TraesCS7D01G003000 CAGCATCTTCTCCACCTCGCTGCCCGTACTGCCGCACGAAAAATGTACGC chr7A_2 CAGCATCTTCTCCACCTCGCTGCCCGTTCTGCCGCACGAAAAATGTAGGC chr4A_5 CAGCATCTTCTCCACCTCGCTGCCCGTCCTCCCGCACGAAAAACGTAAGC SNPs ---------------------------S-------------------S-- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CCGCCCGCCCGCCAATAATTGTCCCC---CTCTTCTCAAGGAAGGATTGC chr7D_1_TraesCS7D01G003000 CCGCCCGCCCGCCAATAATTGTCCCC---CTCTTCTCAAGGAAGGATTGC chr7A_2 CCGCCCGCC----AATAATTGTCCCC---TTCTTCTCAAGGAAGGATTGC chr4A_5 ACGCCCGCACGCCAATCATTGTCCCCCTCTTCTTCTCAAGAAAGGACTGC SNPs -----------------------------S-------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CAATGATTGCGTATTTTTGTTTAGCAAG----TCTTACTGTGTTGTCTAT chr7D_1_TraesCS7D01G003000 CAATGATTGCGTATTTTTGTTTAGCAAG----TCTTACTGTGTTGTCTAT chr7A_2 CAATGATTGTGTATTTTTGTTTACCAAG----TCTTGCTGTGTTGTGTAT chr4A_5 CAATGATTGCGTATTTTTGTTTAACAAGTCTTTCTTACTGTGTTGTCTAT SNPs -----------------------S-------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 GTCAGAGTTACCAGTT------GGCATTGTTCAACTGGATGTATGGAAAT chr7D_1_TraesCS7D01G003000 GTCAGAGTTACCAGTT------GGCATTGTTCAACTGGATGTATGGAAAT chr7A_2 GTCAGAGTTACCAGTT------AGCATTGTTCAGATGGATGCATGGAAAT chr4A_5 GTCAGAGTTACTACCAGTTACCAGCATTGTTCAGATGGATGTATGAACAT SNPs ----------------------S----------SS--------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 A---GGGAACACCAGTTTTTGCTCTTAACTTGTCTCAGCATTACTGTGCC chr7D_1_TraesCS7D01G003000 A---GGGAACACCAGTTTTTGCTCTTAACTTGTCTCAGCATTACTGTGCC chr7A_2 AGGGGGGAACACCAGTTTTTGCTGTTAACTAGTCTCAGCATTAGTTTGCC chr4A_5 AGTT---AACACCAGTTTTTGCTGTTTAACTTGTTTTACATTTAGTGTC- SNPs -----------------------S-------------------S-S---- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 AGAACAAGTTTGGCAAAATCAAAAATTTT--------------------- chr7D_1_TraesCS7D01G003000 AGAACAAGTTTGGCAAAATCAAAAATTTT--------------------- chr7A_2 AGAAAAAGTTTGGCAAAATCCAAAATTTTGTCATGTTGTATTCCTGAATC chr4A_5 ------------------------------------TGTATGATTGAGTC SNPs ----S---------------S----------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -----------------CTTTTTCTTCC-AGTGAACTTCCCTGACTCTGC chr7D_1_TraesCS7D01G003000 -----------------CTTTTTCTTCC-AGTGAACTTCCCTGACTCTGC chr7A_2 CTCATCCTGTGCATTTCCTTTTTCTTCC-AGTGAACTTTCCTGACTCCGC chr4A_5 CTCATCTTGTGCATTTTCTTTTGCTTTCAAGTGAACTTCCCTGACTCTGC SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 ACATGGCACCCCTTCGATGGACGATGCGTCAGCGAAGCTTAAAGATTTTG chr7D_1_TraesCS7D01G003000 ACATGGCACCCCTTCGATGGACGATGCGTCAGCGAAGCTTAAAGATTTTG chr7A_2 ACATGGCACCCCTTCGATGGACGACGCATCTGCTAAACTGAAAGAATTCG chr4A_5 ACATGGCACCCCTTCGATGGACGACACCTCTGCTAAACTCAAAGACTTTG SNPs ------------------------S--S--S--S--S--S-----S---- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 ATGATGATCCTCAGGGGAACGACTACCCGTTTGACTTTGATCTCCGGCAG chr7D_1_TraesCS7D01G003000 ATGATGATCCTCAGGGGAACGACTACCCGTTTGACTTTGATCTCCGGCAG chr7A_2 ACGATGATCCTCAGGGGAACGACTACCCGTTTGACTTTGATCTGCGGCAG chr4A_5 ACGATGATCCTCAGGGGAATGACTACCCATTTGACTTTGATCTCCGGCAG SNPs -S------------------------------------------------ forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 ATCGACGACCTGCTGCCCGATGAAGATGAGCTTTTCGCTGGGATCACGAA chr7D_1_TraesCS7D01G003000 ATCGACGACCTGCTGCCCGATGAAGATGAGCTTTTCGCTGGGATCACGAA chr7A_2 ATCGACGACCTGCTGCCCGATGAGGATGAGCTTTTCGCTGGGATCACGAA chr4A_5 ATCGATGACCTGCTGCCTGATGAAGATGAGCTTTTTGCCGGGATCACAAA SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TGAGATGGAGCCATCTTCGCAGGCGAATCCTGTAGAGGAACTGGAGGAGT chr7D_1_TraesCS7D01G003000 TGAGATGGAGCCATCTTCGCAGGCGAATCCTGTAGAGGAACTGGAGGAGT chr7A_2 TGAGATCGAGCCGGCAGGGCAGACTAACCCCGCGGAGGAACTGGAGGAGT chr4A_5 TGGGATTGAGCCGGCAGGGCAGACTAACCCCGCGGAGGAGCTGGAGGAGT SNPs ------S-----SS-SSS----S-S--S--S-SS---------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TTGATGTGTTTGGCAGCGGAGGGGGAATGGAGCTGGACTCAGACCCTCTG chr7D_1_TraesCS7D01G003000 TTGATGTGTTTGGCAGCGGAGGGGGAATGGAGCTGGACTCAGACCCTCTG chr7A_2 TTGATGTCTTTGGAAGTGGAGGGGGAATGGAGCTGGACTCGGACCCTCTG chr4A_5 TTGATGTGTTTGGCAGTGGAGGGGGAATGGAGCTGGACTCTGACCCTCTG SNPs ----------------S-----------------------S--------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 GACAGCATCACAGCTGGTTTGGGGAATGCAAGTATAAGTGATGGGATCAG chr7D_1_TraesCS7D01G003000 GACAGCATCACAGCTGGTTTGGGGAATGCAAGTATAAGTGATGGGATCAG chr7A_2 GACAGCATCACAGCTGGTCTGGGGAATGCAAGCATAGGCGATGGGATCAG chr4A_5 GACAGCATCACAGTTGGTTTGGGGAATGCAAGTATAGGCGATGGGCTTAG SNPs ------------------------------------S-S----------- forward_443 -------------------------------------------------- reverse_2139 --------------------------------------TGATGGGATCAG forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 GGCCAATGGAGTAAACAACAATTTTGGCCTGTCAAACAGTCCTGGAGCTG chr7D_1_TraesCS7D01G003000 GGCCAATGGAGTAAACAACAATTTTGGCCTGTCAAACAGTCCTGGAGCTG chr7A_2 GGCCAATGGGGTAAACAACAATTTCGGTCTGTCAAACAGTCCTGGAGCTG chr4A_5 GGCCAATGGAGTAAACAACAATTTCGGTCTGTCAAACAGTCCTGGAGCTG SNPs ------------------------S--S---------------------- forward_443 -------------------------------------------------- reverse_2139 GGCCAATG------------------------------------------ forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TGGCTGGGGAGCATCCGTTGGGGGAGCATCCTTCCAGGACATTGTTTGTG chr7D_1_TraesCS7D01G003000 TGGCTGGGGAGCATCCGTTGGGGGAGCATCCTTCCAGGACATTGTTTGTG chr7A_2 TGGCTGGGGAGCATCCGCTGGGGGAGCACCCTTCCAGGACATTGTTCGTG chr4A_5 TGGCTGGGGAGCATCCGTTGGGGGAGCATCCTTCCAGGACGTTGTTTGTG SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 AGGAACATTAACAGTAACGTTGAGGACTCTGAACTGCGCTCTCTCTTTGA chr7D_1_TraesCS7D01G003000 AGGAACATTAACAGTAACGTTGAGGACTCTGAACTGCGCTCTCTCTTTGA chr7A_2 AGGAACATTAACAGTAACGTCGAGGACTCTGAACTGCGCTCTCTCTTTGA chr4A_5 AGGAACATTAACAGTAATGTTGAGGACTCTGAACTGCGCTCTCTCTTTGA SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 GGTATGAACTGCAGTGGTTAA--------------------CAGATTTAT chr7D_1_TraesCS7D01G003000 GGTATGAACTGCAGTGGTTAA--------------------CAGATTTAT chr7A_2 GGTAACCAGATTTATGTACTCTGTTTTTTAGAGAG-AGAACCAGATTTAT chr4A_5 GGTAACCAGATTTATGTACTCTGTTTTTTTAGAGATAGAACCAGATTTAT SNPs ----SSS-SSSSSS--SSSSS----------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CTACTTCTAATGAATTGCATTTCCAGTCCAATTTGCTAGTT-TTACATAG chr7D_1_TraesCS7D01G003000 CTACTTCTAATGAATTGCATTTCCAGTCCAATTTGCTAGTT-TTACATAG chr7A_2 GTCCTTTTAA------------CCACTCCAATTTGTCTGTTATTACTCAG chr4A_5 GTCCTTTTAA------------CCAGTCCAATTTGTCTGTT-TTACTCAG SNPs S-S---S---SSSSSSSSSSSS-------------SSS--------SS-- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CAGCAGTAGGTGTATCATTCAGTATCTGAACATCTTCTGTATATAGGATA chr7D_1_TraesCS7D01G003000 CAGCAGTAGGTGTATCATTCAGTATCTGAACATCTTCTGTATATAGGATA chr7A_2 CAGCAGTAGGTGTATCATTTAGTATCTGAACATCTTCTGTATATAGGATA chr4A_5 CAGCAGTAGGTGTATCCTTTAACTGAATA------TCTGTATATAGGATA SNPs -------------------S------------------------------ forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TTTATGATCTT-----------------------------GACACCTTCA chr7D_1_TraesCS7D01G003000 TTTATGATCTT-----------------------------GACACCTTCA chr7A_2 TTTATGATCTT-----------------------------GACACCTTCA chr4A_5 TTTATGATCTTTTTTTGAGACTAAGGATATTTATGATCTTGACACCTTCA SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TCTTCTGTGTTGACTAATCATAACCACTGCTTGTTCTTATCTGTATCCGT chr7D_1_TraesCS7D01G003000 TCTTCTGTGTTGACTAATCATAACCACTGCTTGTTCTTATCTGTATCCGT chr7A_2 TCTTCTGTGTTGACTAATCATAACCACCGTTTGTTCTTATCTGTATCCGT chr4A_5 TCTTCTGTATTGACTAATTATAGCCACTGTTTGTTCTTATTTGTATCTGT SNPs -----------------------------S-------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TTGATGTCGAATCTCAGTTGGTCTTGACAGTGACGTTATTGTCATTCCTT chr7D_1_TraesCS7D01G003000 TTGATGTCGAATCTCAGTTGGTCTTGACAGTGACGTTATTGTCATTCCTT chr7A_2 TTGATGTCGAATCTCAGTTGGTCTTGACAGTGACGTTATTGTCATTCCTT chr4A_5 TTGATGTCGAATCTCAGTTGTTCTTGACAGTGACGTTATTGTCATTCCTT SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TCAGCAATTTGGGGATATCCGGACCCTTTACACTGCAACGAAGCACAGGG chr7D_1_TraesCS7D01G003000 TCAGCAATTTGGGGATATCCGGACCCTTTACACTGCAACGAAGCACAGGG chr7A_2 TCAGCAATTTGGGGATATCCGGACCCTGTACACCGCAACGAAGCATAGGG chr4A_5 TCAGCAATTTGGGGATATCCGGACCCTTTACACTGCAACCAAGCATAGGG SNPs ---------------------------------------------S---- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 GCTTTGTGATGATATCTTATTTTGATATCCGGGCTGCACGTGGTGCGATG chr7D_1_TraesCS7D01G003000 GCTTTGTGATGATATCTTATTTTGATATCCGGGCTGCACGTGGTGCGATG chr7A_2 GCTTTGTAATGATATCTTATTTTGATATCCGAGCTGCACGCGGTGCAATG chr4A_5 GCTTTGTGATGATATCTTATTTTGATATCCGAGCTGCACGTGGTGCGATG SNPs -------------------------------S------------------ forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CGTTCATTGCAGAATAAGCCTCTGAGGAGGAGGAAGCTTGACATACATTT chr7D_1_TraesCS7D01G003000 CGTTCATTGCAGAATAAGCCTCTGAGGAGGAGGAAGCTTGACATACATTT chr7A_2 CGTTCGTTGCAGAATAAGCCTCTGAGGAGGAGAAAGCTCGACATTCATTT chr4A_5 CGTTCGTTGCAGAATAAGCCTCTGAGGAGGAGAAAGCTTGACATTCATTT SNPs -----S--------------------------S-----------S----- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TTCTATCCCAAAGGTTTGTTATGTTTCTCTTCTGCGCCCATCTGAAGCCC chr7D_1_TraesCS7D01G003000 TTCTATCCCAAAGGTTTGTTATGTTTCTCTTCTGCGCCCATCTGAAGCCC chr7A_2 TTCTATCCCAAAGGTTTGTTACATTTCTCTTCTGCACACTT----AGCCC chr4A_5 TTCGATCCCAAAGGTTTGTTATGTTTCTCTTCTACACCCTT----AACTC SNPs -----------------------------------S---S-SSSS----- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------GAAGCCC forward_2790 --------------------ATGTTTCTCTTCTGCGCCCA---------- reverse_4784 -------------------------------------------------- forward_2818 ------------------------------------------------CC reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TTGCCCACAAAAGCACTCCTTGAAATTGAATACCTTGTTGAT-TTTGCAG chr7D_1_TraesCS7D01G003000 TTGCCCACAAAAGCACTCCTTGAAATTGAATACCTTGTTGAT-TTTGCAG chr7A_2 TTGGCCGCAAAAGTAGTTCTTGAAAATGAATGCCTTGTTGGTCTTTGCAG chr4A_5 TTGGCCACAAAGTTAGTTCTTGAAAATGAATACCTTGTTCATCTTTGCAG SNPs ---S---------S-S-S-------S------------------------ forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 TTGCCCACAAAAG------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 TTGCCCACAAAAGCACTC-------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 GAGAATCCGTCTGACAAAGATTTAAACCAGGGGACTCTTGTTATCTTTAA chr7D_1_TraesCS7D01G003000 GAGAATCCGTCTGACAAAGATTTAAACCAGGGGACTCTTGTTATCTTTAA chr7A_2 GAGAATCCATCTGACAAAGATTTAAACCAGGGGACTCTTGTTATCTTTAA chr4A_5 GAGAATCCATCTGACAAAGATTTAAACCAGGGGACTCTTGTTATCTTTAA SNPs --------S----------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CTTGGATCCATCAGTTTCTAATGAAGAAGTTCGCCAGATTTTCGGAACTT chr7D_1_TraesCS7D01G003000 CTTGGATCCATCAGTTTCTAATGAAGAAGTTCGCCAGATTTTCGGAACTT chr7A_2 CTTGGATCCGTCAGTTTCTAATGAAGAGGTTCGCCAGATTTTCGGAACTT chr4A_5 CTTGGATCCCTCAGTTTCTAATGAAGAAGTTCGCCAGATTTTTGGAACTT SNPs ---------S---------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 ATGGGGAAGTAAAGGAGGTTAGGATGCTACTCCCAAATTTTGTTCCCACT chr7D_1_TraesCS7D01G003000 ATGGGGAAGTAAAGGAGGTTAGGATGCTACTCCCAAATTTTGTTCCCACT chr7A_2 ATGGGGAAGTAAAGGAGGTCAGGATGCTACTCCCAAATTTTGTTCCTCCT chr4A_5 ATGGGGAAGTAAAGGAGGTCAGGATGCTACTCCCAAGTTTTGTTCCCACT SNPs -------------------S------------------------------ forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 AACTTAAGGTTTCTACTTGGAAAATGCAGCTTCATACATCTTTCTTGTGG chr7D_1_TraesCS7D01G003000 AACTTAAGGTTTCTACTTGGAAAATGCAGCTTCATACATCTTTCTTGTGG chr7A_2 AAATTAAGGTTTCTGCTTGAAAAATGCAGCTTCATACATCTTTCTTTTGG chr4A_5 AAATTAAGGTTTCTGCTTGGAAAATGCAGCTGCATACATATTTCCTTGGG SNPs --S-----------S-------------------------------S--- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TATTCATTCAAGCTGTTTGATTTCTGTTTGCAGATAAGAGAGACGCCTAA chr7D_1_TraesCS7D01G003000 TATTCATTCAAGCTGTTTGATTTCTGTTTGCAGATAAGAGAGACGCCTAA chr7A_2 TATTCATTCAAGCTGTTTGATTTCTGTTTGCAGATAAGAGAGACGCCTAA chr4A_5 TATTCATTCCAGCTGTTTGATTTCTGTTTGCAGATAAGAGAGACGCCTAA SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CAAAAAGCACCACAAGTTTATTGAGTTCTACGATGTTAGGGCGGCAGAAG chr7D_1_TraesCS7D01G003000 CAAAAAGCACCACAAGTTTATTGAGTTCTACGATGTTAGGGCGGCAGAAG chr7A_2 CAAAAAGCACCATAAGTTTATTGAGTTCTACGATGTTAGGGCGGCAGAAG chr4A_5 CAAGAAGCACCACAAGTTTATTGAGTTCTACGATGTTAGGGCGGCAGAAG SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CTGCTCTTCGGTCACTGAATAAGAGCGAGATCGCTGGAAAACGCATCAAG chr7D_1_TraesCS7D01G003000 CTGCTCTTCGGTCACTGAATAAGAGCGAGATCGCTGGAAAACGCATCAAG chr7A_2 CTGCTCTTCGGTCACTGAATAAGAGTGAGATTGCTGGAAAACGTATCAAG chr4A_5 CTGCTCTTCGGTCACTGAATAAGAGCGAGATCGCTGGAAAACGCATCAAG SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TTGGAGCCAAGTCGTCCTGGTGGAACACGCAGAAGGTATGAATATTCCAA chr7D_1_TraesCS7D01G003000 TTGGAGCCAAGTCGTCCTGGTGGAACACGCAGAAGGTATGAATATTCCAA chr7A_2 TTGGAGCCAAGTCGTCCTGGTGGAACACGCAGAAGGTATGAATGTTCCAA chr4A_5 TTGGAGCCAAGTCGTCCTGGTGGAACACGCAGAAGGTATGAATATTCCAA SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 GAGTTACTATATTGTT--------TAAGCAGTAGATATGCCTGTTTGCTC chr7D_1_TraesCS7D01G003000 GAGTTACTATATTGTT--------TAAGCAGTAGATATGCCTGTTTGCTC chr7A_2 GCGTTATTGAATGGTATATTTGAATAAGCAGTAGATATGCCTGTTTGCTC chr4A_5 GAGTTATCGAATGGTATAC-TGAATAAGCATTAGATATGCCTGTTTGCTC SNPs ------S-SS--S--S---------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CTCTATAGATGCTCCTTGAATTTTGGACAACACAATTTTTCAGTTATCTG chr7D_1_TraesCS7D01G003000 CTCTATAGATGCTCCTTGAATTTTGGACAACACAATTTTTCAGTTATCTG chr7A_2 CTCGAGAGATGTTCCTTGAATTTTGGACAACACAAATTTTCAGATATCTG chr4A_5 CTCTAGAGATGTTCCTTGAATTTTGGACAACACAATTTTTCAGTTATCTG SNPs -----S-----S-------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TCTTTGATGACTTTTACCAGTCTGATCTGACTCTTCTTCTATTTTCTTCT chr7D_1_TraesCS7D01G003000 TCTTTGATGACTTTTACCAGTCTGATCTGACTCTTCTTCTATTTTCTTCT chr7A_2 TCTTTGATGACTTTTTCCAGTCTGATCTGACTCTTCTTCTATTTTCTTCT chr4A_5 TCTTTGATGACTTTTACCAGTCTGATCTGACTCTTCTTCTATTTTCTTCT SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TCTGATTTAGCTTGGTGCAACACCTTGGTCATGAACTAGA---AGATGAA chr7D_1_TraesCS7D01G003000 TCTGATTTAGCTTGGTGCAACACCTTGGTCATGAACTAGA---AGATGAA chr7A_2 TCTGATTTAGCTTGGTGCAACACCTTGGTCATGAACTAGA---AGATGAA chr4A_5 TCTGATTTAGCTTGGTGCAACACCTTGGTCATGAACTAGAGCAAGATGAA SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 ACCAGAGGTTATAGGCATTCTCCTCACGTTGGATCGCCTATGGCTAACTC chr7D_1_TraesCS7D01G003000 ACCAGAGGTTATAGGCATTCTCCTCACGTTGGATCGCCTATGGCTAACTC chr7A_2 CCCAGAGGTTATAGGCATT---CTCACGTCGGATCGCCTATGGCTAACTC chr4A_5 CCCAGAGGTTACAGGCATT---CTCATGTTGGATCGCCCATGGCCAACTC SNPs S------------------SSS---------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TCCCCCAGGTACTTTTACTGGATCAGTTTTAAGTCATTTTATCCTCACTT chr7D_1_TraesCS7D01G003000 TCCCCCAGGTACTTTTACTGGATCAGTTTTAAGTCATTTTATCCTCACTT chr7A_2 TCCTCCAGGTAC-TTTACTGGATCAGTTTTAAGTCTTGTTATCCTCACTT chr4A_5 TCCTCCAGGTACATTTACTGGATCAGTTTTAAGTCTTGTTATCCTCGCTT SNPs ---S--------S----------------------S-S------------ forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TATCTAATTTTCTTCCAAACACCTGTTCACAACTAAGAAATGCATCATCT chr7D_1_TraesCS7D01G003000 TATCTAATTTTCTTCCAAACACCTGTTCACAACTAAGAAATGCATCATCT chr7A_2 TATCTAATTTTCTTCCAAACACCTGTTCACAACTAAGAAATGCATCATCT chr4A_5 TATCTAATTTTCTTCTAAACACCTGTTCACAACTAAGAAATGCATCTTCT SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------ATCATCT reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CTTGTCAGGGGCGTGGGCTCAATATGGTAGTCCAACCGACAACAATTTGC chr7D_1_TraesCS7D01G003000 CTTGTCAGGGGCGTGGGCTCAATATGGTAGTCCAACCGACAACAATTTGC chr7A_2 CTTGTCAGGGGCATGGGCTCAGTATGGTAGCCCAACCGACAACAATTTGC chr4A_5 CTTGGCAGGGGCATGGGCTCAATATGGCAGTCCAACCGACAACAATTTGC SNPs ------------S------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 CTTGTCAGGGGCG------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TGCATGCATTCAGCAATTCACCTACTGGAAACGGAATGAGCCCTATCGGA chr7D_1_TraesCS7D01G003000 TGCATGCATTCAGCAATTCACCTACTGGAAACGGAATGAGCCCTATCGGA chr7A_2 TGCATGCATTCAGCAACTCACCTACTGGAAACGGAATGAGCCCTATCGGA chr4A_5 TGCATGCATTCAGCAACTCACCTACTGGAAATGGAATGAGTCCTATCGGA SNPs ----------------S--------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 ATGTCCCCTTCAATGATGTCAAATGCTCTGAAGATTGCACCAATTGGGAA chr7D_1_TraesCS7D01G003000 ATGTCCCCTTCAATGATGTCAAATGCTCTGAAGATTGCACCAATTGGGAA chr7A_2 ATGTCCCCTTCAATGATGTCAAATGCTCTGAAGATTGCACCAATTGGGAA chr4A_5 ATGTCCCCTTCAATGATGTCAAATGCTCTGAAGATCGCGCCAATTGGGAA SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 GGACAACAACTGGTCTAAATACGATCAAGTATTCTCAAACAGCAACCAGT chr7D_1_TraesCS7D01G003000 GGACAACAACTGGTCTAAATACGATCAAGTATTCTCAAACAGCAACCAGT chr7A_2 GGACAACAACTGGTCTAAATATGATCAAGTATTCTCAAACAGCAACCAGT chr4A_5 GGACAACAACTGGTCTAAATATGATCAAGTATTCTCAAACAGCAACCAGT SNPs ---------------------S---------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CCCTTGGCGCAGCGTTTCAGCATTCACAGTCATACCAAGATCGCAAAAGT chr7D_1_TraesCS7D01G003000 CCCTTGGCGCAGCGTTTCAGCATTCACAGTCATACCAAGATCGCAAAAGT chr7A_2 CCCTCGGCGCTGCGTTTCAGCACTCACAGTCATACCAAGATCGCAAAAGT chr4A_5 CCCTTGGCGCTGCGTTTCAGCATTCACAGTCATACCAAGATCGCAAAAGT SNPs ----------S--------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 GAGCATATGAGCTCGAGTCCTGGGACTTTAACAGGGCCCGAGTTTCTGTG chr7D_1_TraesCS7D01G003000 GAGCATATGAGCTCGAGTCCTGGGACTTTAACAGGGCCCGAGTTTCTGTG chr7A_2 GACCATATGAGCTCGAGTCCTGGGACATTAACAGGGCCTGAGTTTCTGTG chr4A_5 GAGCATATGAGCTCGAGTCCTGGGACTTTAACAGGGCCCGAGTTTCTGTG SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 GGGCAGCCCAAAGCCTTATCCAGAGCATTCCCAATCCTCATCAATGTGGC chr7D_1_TraesCS7D01G003000 GGGCAGCCCAAAGCCTTATCCAGAGCATTCCCAATCCTCATCAATGTGGC chr7A_2 GGGCAGCCCAAAGCCTTATCCGGAGCATTCCCAGTCCTCATCAATGTGGC chr4A_5 GGGCAGCCCAAAGCCTTATCCGGAGCATTCCCAATCCTCATCAATGTGGC SNPs ---------------------S---------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 --GCAGCCCAAAGCCTTATCCA---------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 GTCCACCACCAGTTGGTCATGCAATGTCATCCAGTAGCCGCCCTCAGGGT chr7D_1_TraesCS7D01G003000 GTCCACCACCAGTTGGTCATGCAATGTCATCCAGTAGCCGCCCTCAGGGT chr7A_2 GTCCACCACCAGTTGGTCATGCAATGTCATCTAGTAGCCGCCCTCAGGGT chr4A_5 GTCCACCACCAGTTGGTCATGCAATGTCATCTAGTAGCCGCCCTCAGGGT SNPs -------------------------------S------------------ forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CAGGGCTTCCTGTATGGTAGTCGCCAGGCTTCATTGTTCGGATCTTTGGA chr7D_1_TraesCS7D01G003000 CAGGGCTTCCTGTATGGTAGTCGCCAGGCTTCATTGTTCGGATCTTTGGA chr7A_2 CAGGGCTTCCTGTATGGTAGTCGCCAGGCTTCATTGTTCGGATCTTTGGA chr4A_5 CAGGGCTTCCTGTATGGTAGTCGCCAGGCTTCATTGTTCGGATCTTTGGA SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TCAAAACCGTCATCATGTTGGGTCTGCCCCTTCTGGCGCTCCATTTGAGA chr7D_1_TraesCS7D01G003000 TCAAAACCGTCATCATGTTGGGTCTGCCCCTTCTGGCGCTCCATTTGAGA chr7A_2 TCAAAACCGTCATCATGTTGGGTCTGCCCCTTCAGGAGCTCCGTTTGAGA chr4A_5 TCAAAACCGTCATCATGTTGGGTCTGCCCCTTCTGGCGCTCCATTTGAGA SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 GCCACTTTGGATTTTTGCCTGAATCGCCCGAGACGTCGTTTATGAATCAA chr7D_1_TraesCS7D01G003000 GCCACTTTGGATTTTTGCCTGAATCGCCCGAGACGTCGTTTATGAATCAA chr7A_2 GCCACTTCGGATTTTTGCCTGAATCGCCCGAGACATCGTTTATGAATCAA chr4A_5 GCCACTTTGGATTTTTGCCTGAATCGCCTGAGACGTCGTTTATGAATCAA SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 GTTAGGTTTGCGAATATGGGGAACATTGGCGGTGCTAACCGAAACGGGGG chr7D_1_TraesCS7D01G003000 GTTAGGTTTGCGAATATGGGGAACATTGGCGGTGCTAACCGAAACGGGGG chr7A_2 GTTAGGTTTGCAAATATGGGGAACATTGGCGGTGCTAACCGAAACGGGGG chr4A_5 GTTAGGTTTGCAAATATGGGGAACATTGGCGGTGCTAACCGAAACGGGGG SNPs -----------S-------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 AAGCCTCATGCTGAACATGGCTTCTCGTGCTTCCCTGAATCCTGTTTCTG chr7D_1_TraesCS7D01G003000 AAGCCTCATGCTGAACATGGCTTCTCGTGCTTCCCTGAATCCTGTTTCTG chr7A_2 AAGCCTCATGCTGAACATGGCTTCTCGTGCTTCCCTGAATCCTGTCTCTG chr4A_5 AAGCCTCATGCTGAACATGGCTTCTCGTGCTTCCTTGAATCCTGTTTCCG SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CTCTAAGTGGAAGCCTGACAGATAATAACTCTACTAACTTCAGACCAATA chr7D_1_TraesCS7D01G003000 CTCTAAGTGGAAGCCTGACAGATAATAACTCTACTAACTTCAGACCAATA chr7A_2 CTCTAAGTGGAAGCCTGACAGATAATAACTCTACTAACTTCAGACCAGTA chr4A_5 CTCTAAGTGGAAGCCTGACAGATAATAACTCTACTAACTTCAGACCAGTA SNPs -----------------------------------------------S-- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CCATCGCCAAGACTTGGGCAACCACCATTCTTTGGGAACACCACATATCA chr7D_1_TraesCS7D01G003000 CCATCGCCAAGACTTGGGCAACCACCATTCTTTGGGAACACCACATATCA chr7A_2 CCATCGCCAAGACTTGGGCAACCACCATTCTTTGGGAACACCACATATCA chr4A_5 CCGTCGCCAAGGCTTGGGCAACCACCATTCTTTGGGAACACCACATATCA SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 AGGGCCTGGTTATTATGGACTTGACAGCTCCTCCATTGAGCGTGGTCGCA chr7D_1_TraesCS7D01G003000 AGGGCCTGGTTATTATGGACTTGACAGCTCCTCCATTGAGCGTGGTCGCA chr7A_2 AGGACCTGGTTATTATGGACTTGACAGCTCCACCATTGAGCGTGGTCGTA chr4A_5 AGGACCTGGTTATTATGGACTTGACAGCTCCTCCATTGAGCGTGGTCGTA SNPs ---S--------------------------------------------S- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 ACCGCCGAGTTGACAGCAGCGCGTTCCAGGCAGATAGCAAGAAGCAGTAT chr7D_1_TraesCS7D01G003000 ACCGCCGAGTTGACAGCAGCGCGTTCCAGGCAGATAGCAAGAAGCAGTAT chr7A_2 ACCGCAGAGTTGACAGCAGCGCGTTCCAGGCAGATAGCAAGAAGCAGTAT chr4A_5 ACCGCCGAGTTGACAGCAGCGCGTTCCAGGCAGATAGCAAGAAGCAGTAT SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CAGCTTGATTTGGACAAGATCCGTAAAGGAGAGGATACTCGGACAACATT chr7D_1_TraesCS7D01G003000 CAGCTTGATTTGGACAAGATCCGTAAAGGAGAGGATACTCGGACAACATT chr7A_2 CAGCTTGATTTGGACAAGATCCGTAAAGGGGAGGATACTCGGACAACATT chr4A_5 CAGCTTGATTTGGACAAGATCCGTAAAGGAGAGGATACTCGGACAACATT SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 GATGATTAAAAACATTCCAAACAAGTATGCAGTTTAATGCC----ATGTT chr7D_1_TraesCS7D01G003000 GATGATTAAAAACATTCCAAACAAGTATGCAGTTTAATGCC----ATGTT chr7A_2 GATGATTAAAAACATCCCAAACAAGTATGCCCGTGTCCTCATTTGGTGTC chr4A_5 GATGATAAAAAACATTCCAAACAAGTATGCCCGTGTTCTCATTTGATGTC SNPs ------------------------------SSS-SSSSS-S--------S forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TTCTTGTTTGCTCTTTATA--TTGCTTGCTAATTGTCCTAACCCAGTTTT chr7D_1_TraesCS7D01G003000 TTCTTGTTTGCTCTTTATA--TTGCTTGCTAATTGTCCTAACCCAGTTTT chr7A_2 TTCTTGTGTGCTCTTTATATTTTGCTTGCTGGTTGTCCTTACTCATTTTT chr4A_5 TTCATGTGTGCTCTTTATGTTTTGCTTGCTGGTTGTCCTCACTCTGTTTT SNPs -------S----------------------SS-------S--S------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TCCTGAATTGGGTAGGTACACATCCAAGATGCTTTTGGCTGCAATCGATG chr7D_1_TraesCS7D01G003000 TCCTGAATTGGGTAGGTACACATCCAAGATGCTTTTGGCTGCAATCGATG chr7A_2 TCCTGAATTCGATAGGTACACATCCAAGATGCTTTTGGCTGCAATCGATG chr4A_5 TCCTGAATGCGATAGGTACACATCCAAGATGCTTTTGGCTGCAATTGATG SNPs ---------S-S-------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 AGCTCCACAAAGGAACATATGACTTCTTCTACCTGCCAATTGATTTCAAG chr7D_1_TraesCS7D01G003000 AGCTCCACAAAGGAACATATGACTTCTTCTACCTGCCAATTGATTTCAAG chr7A_2 AGCTCCACAAAGGAACATATGACTTCTTCTACCTGCCAATTGATTTCAAG chr4A_5 AGCTCCACAAAGGAACATATGACTTCTTCTACCTGCCAATTGATTTCAAG SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 GTAGTGTATTTTATATTGCTTCATCTTGTTGTTTTTCAGCGACTTATTCA chr7D_1_TraesCS7D01G003000 GTAGTGTATTTTATATTGCTTCATCTTGTTGTTTTTCAGCGACTTATTCA chr7A_2 GTAGTATATCTGATATTGAC-----------TTTTTCAACGAGGTATTCA chr4A_5 GTAGTATATTTGATATTGCTTTATGCTGTTGTTTTTCAATGAGGTATTAG SNPs -----S-----S---------S--SS------------S---SS------ forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CATATCCAGTACTGTAATAATTGTTTCTTCATTTC----CCCCTGCAGAA chr7D_1_TraesCS7D01G003000 CATATCCAGTACTGTAATAATTGTTTCTTCATTTC----CCCCTGCAGAA chr7A_2 GATATCCAGCAGTGTAATAATTGTTTTTTTTTTCATTTTCCCCTGCAGAA chr4A_5 GATATCCAGCAGTGTAATAATTGTTTTTTTTTTCATTTTCCCCTGCAGAA SNPs S--------S-S--------------S--SS--SS--------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 ---------------------------------TCCCCCTGCAGAACAAA forward_2818 -------------------------------------------------- reverse_4785 ----------------------------------CCCCCTGCAGAACAAA forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CAAATGCAATGTCGGTTATGCGTTCATCAACATGATATCCCCTGTGCACA chr7D_1_TraesCS7D01G003000 CAAATGCAATGTCGGTTATGCGTTCATCAACATGATATCCCCTGTGCACA chr7A_2 CAAATGCAATGTTGGTTATGCGTTCATTAACATGATATCCCCTGTGCACA chr4A_5 CAAATGCAATGTTGGTTATGCGTTCATTAACATGATATCCCCTGTGCACA SNPs ------------S--------------S---------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 TGC----------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 TGCA---------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TTGTATCTTTCTACCAGGTGTGTTTTCTTTGTTGGTCCTTTACATGTTCC chr7D_1_TraesCS7D01G003000 TTGTATCTTTCTACCAGGTGTGTTTTCTTTGTTGGTCCTTTACATGTTCC chr7A_2 TTGTATCTTTCTACCAGGTATGTTTTCTTTGTTGGTCCTTTACATGTTCC chr4A_5 TTGTCTCTTTCTACCAGGTGTGTTTTCTTTGTTGGTCCTTTACATGTTCC SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 ATTGTTCTCTTATCAATCCATGTCTAGCTGAATTTCACAGCAGCCTATGC chr7D_1_TraesCS7D01G003000 ATTGTTCTCTTATCAATCCATGTCTAGCTGAATTTCACAGCAGCCTATGC chr7A_2 ATTGTTCTCTTACCGATCCATGTCTAGCTGAATTTCACAGCAGCCTATGC chr4A_5 ATTGTTCTCTTATCAATCCATGTCTAGCTGAATTTCACAGCAGCCTATGC SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TCGCTGGTTGAATTAATCTCAACAGCTTGAAATATGACCTTTTGGATGCC chr7D_1_TraesCS7D01G003000 TCGCTGGTTGAATTAATCTCAACAGCTTGAAATATGACCTTTTGGATGCC chr7A_2 TCGCTGGTTGAATTAATCTCAACAGCTTGAAATATGACCTTTTGGATGCC chr4A_5 TTGCTGGTTGAATTAATCTCAACAGCTTGGAATATGACCTTCTGCATGCC SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TACCTTTAATTACAGGCTTTCAATGGGAAGAAGTGGGAGAAATTTAACAG chr7D_1_TraesCS7D01G003000 TACCTTTAATTACAGGCTTTCAATGGGAAGAAGTGGGAGAAATTTAACAG chr7A_2 TACCTTTAATTACAGGCTTTCAATGGGAAGAAGTGGGAGAAATTTAACAG chr4A_5 TACCTTTAATTACAGGCTTTCAATGGGAAGAAGTGGGAGAAATTTAACAG SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CGAGAAAGTAGCATCATTGGCGTATGGTAGGATCCAGGGAAGGAATGCAC chr7D_1_TraesCS7D01G003000 CGAGAAAGTAGCATCATTGGCGTATGGTAGGATCCAGGGAAGGAATGCAC chr7A_2 CGAGAAAGTAGCGTCATTGGCTTATGGTAGGATCCAGGGAAGGAATGCAC chr4A_5 CGAGAAAGTAGCGTCATTGGCTTATGGTAGGATCCAGGGAAGGAATGCAC SNPs ------------S--------S---------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TAATCTCACATTTCCAGAATTCAAGTTTGATGAACGAGGACAAGAGATGC chr7D_1_TraesCS7D01G003000 TAATCTCACATTTCCAGAATTCAAGTTTGATGAACGAGGACAAGAGATGC chr7A_2 TAATCTCACATTTCCAGAATTCAAGTTTGATGAACGAGGACAAGAGATGC chr4A_5 TAATCTCACATTTCCAGAATTCAAGTTTGATGAACGAGGACAAGAGATGC SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CGCCCCATTCTTTTTCATTCCAACGGGCCAGAGACTGGAAATCAGGTAAT chr7D_1_TraesCS7D01G003000 CGCCCCATTCTTTTTCATTCCAACGGGCCAGAGACTGGAAATCAGGTAAT chr7A_2 CGCCCCATTCTTTTTCATTCCAATGGACCAGAGACTGGAAATCAGGTAAC chr4A_5 CGCCCCATTCTGTTTCATTCCAATGGACCAGAGACTGGAAATCAGGTAAC SNPs -----------------------S--S----------------------S forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 AAATTGCTGCATTCTATGCTGAAAGTGAAAGGGCATCTGTTTTATGAACT chr7D_1_TraesCS7D01G003000 AAATTGCTGCATTCTATGCTGAAAGTGAAAGGGCATCTGTTTTATGAACT chr7A_2 AAGTTGTTGCATTGCATGCTGAAAGGGAAAGGCCATCTGTTTTGAAAC-- chr4A_5 AA---GTTGCATTGCATGCTGAAAGTTAAAGGCCGTCTGTTTTATGAACT SNPs --S---S------SS-----------------S----------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TGTATTGCACAAAACATGTCCTTCTCTGGCACTAAATCATGTTACTCCCT chr7D_1_TraesCS7D01G003000 TGTATTGCACAAAACATGTCCTTCTCTGGCACTAAATCATGTTACTCCCT chr7A_2 -------------------------------------------------- chr4A_5 TGTATTGAACAAAACACGGCCTTATTTGGCACTATAAATCATGT------ SNPs -------S--------S-S----S-S--------S-SSSSS-SSSSSSSS forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 CTGATCCATATTAGTTATCACTGAAATGGATGTATCTAGACGTATTTCAG chr7D_1_TraesCS7D01G003000 CTGATCCATATTAGTTATCACTGAAATGGATGTATCTAGACGTATTTCAG chr7A_2 -------------------------------------------------- chr4A_5 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TGCTAGATACATCCGTTTGAATGACAATTAATATGGATCAGAGGGAGTAT chr7D_1_TraesCS7D01G003000 TGCTAGATACATCCGTTTGAATGACAATTAATATGGATCAGAGGGAGTAT chr7A_2 -------------------------------------------------- chr4A_5 -----------------------------------------------TAT SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 ATAACTGTTGCAAGATAATTGAAACTCAGCATCTTATTTTGACACGTGAA chr7D_1_TraesCS7D01G003000 ATAACTGTTGCAAGATAATTGAAACTCAGCATCTTATTTTGACACGTGAA chr7A_2 -------------------------------------------------- chr4A_5 ATAACTGTTGCAAGATAATTGGAACTCAGTATCTCATTTTGTCACGTGAA SNPs ---------------------S-------S----S------S-------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -----------------------------------------ACACGTGAA forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 ---------------------------------------TGACACGTGAA reverse_6931 -------------------------------------------------- input_sequence_11914 GCATGACAGAGTATGATAATGCTCTTGAAGTATTAGTTATAATTC-TTCA chr7D_1_TraesCS7D01G003000 GCATGACAGAGTATGATAATGCTCTTGAAGTATTAGTTATAATTC-TTCA chr7A_2 -------------------------------ATTAGTTGTAGTTCTTTCA chr4A_5 GCATGACAGGGTATGATAATGGTATTGAAATATTAGTTATAATTCCTTCA SNPs ---------S-----------S-S-----S-------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 GCATGACAGAGT-------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 GCATGACAGA---------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 AAAGTGAAGTGTAATACCCAGGGACACGATTTACTACCAGTGTTTTATTT chr7D_1_TraesCS7D01G003000 AAAGTGAAGTGTAATACCCAGGGACACGATTTACTACCAGTGTTTTATTT chr7A_2 AAAGTGAAGTGTAATACCCGGGGACACGATTTACTACCAGTGTTCTGTTT chr4A_5 AAAGTGAAGTGTAATACCCAGGGACACAATTTACTACTGCTGTTTTATTT SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 ATGCA-TTTTTTTGAGAAATATTGACCCTGAATGCAAGTGGTCTAATACC chr7D_1_TraesCS7D01G003000 ATGCA-TTTTTTTGAGAAATATTGACCCTGAATGCAAGTGGTCTAATACC chr7A_2 ATGCA-ATTTTTTGAGCAATATTGACCTTTAATGCAAGTGCTCTAATACC chr4A_5 ATGCAATTTTTTTGAGAAATATTGACCCATAATGCAAGTGCTCTAATACC SNPs -----------------------------S----------S--------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 ATGAATGAAACTCAGGAACCATTTCCCAATGGGATATGCATCCACATGCC chr7D_1_TraesCS7D01G003000 ATGAATGAAACTCAGGAACCATTTCCCAATGGGATATGCATCCACATGCC chr7A_2 ATGAATGAAACTCAGGAACCATTCCCAAATGGGATATGCATCCACATGCC chr4A_5 ATGAACGAAACTCAGGAACCATTCCCGAACGGGATATGCATCCACATGCC SNPs -----------------------S--S----------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 TCTGGATGGTGGGGCAGGCTCCAGCAAGGAGCCCCTCGGCTTTGAAGAGG chr7D_1_TraesCS7D01G003000 TCTGGATGGTGGGGCAGGCTCCAGCAAGGAGCCCCTCGGCTTTGAAGAGG chr7A_2 TCTGGATGGTGGGGCAGGCTCCAGCAAGGAGCCCCTCGGCTTTGAAGAGG chr4A_5 TCTGGATGGTGGGGCAGGCTCCAGCAAGGAGCCCCTCGGCTTTGAAGAGG SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 ACGACAATCCCAGCGAGATCAAGATATCCGGGGAGAAATCCATGGCGGGG chr7D_1_TraesCS7D01G003000 ACGACAATCCCAGCGAGATCAAGATATCCGGGGAGAAATCCATGGCGGGG chr7A_2 ACGACAATCCCAACGAGATCAAGATATCCGGGGAGAAATCCATGGTGGGG chr4A_5 ACGACAATCCCAACGAGATGAAGATATCCGGGGAGAAATCCATGGCGGGG SNPs ------------S------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 ------------GCGAGATCAAGATATCCGGGG----------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 AGTTTGTAG----------------------------------------- chr7D_1_TraesCS7D01G003000 AGTTTGTAGATTATATAACCAACGAAGAGGCTTGGAGTCGCCGCCGCGGA chr7A_2 AGTTTGTAGATTATATAACCAACAAAGAGGCTCGGAGTCGCCGCCGCGGA chr4A_5 AGTTTGTAGATTATATAACCAACGAAGAGGCTCGGAGTCGCCGCCGCGGA SNPs --------------------------------S----------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 GTCTAACTGTCTTGTGACAAAAGGCGGTGTCCA-CCCCAAACTGTATAAA chr7A_2 GTCTAACTGTCTTGTAACGAAAGGCGGTGTCCACCCCCAAACTGTATAAA chr4A_5 GTCTAACTGTCTTGTGACGAAAGGCGGTATCCACCCCCAAACTGTATAAA SNPs ------------------S------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 AGTGAGGAAGATTGGTTTAGTAGTGCAGGAATTATGGCGTGGCGTTGCAT chr7A_2 AGTGAGGAAGATTGGTTTAGTAGTGCAGGAATTATGGCGTGGCGTGGCAT chr4A_5 AGTGAGGAAGATTGGTTCAGTAGTGCAGGAATT-----GTGGCGTGGCGT SNPs ---------------------------------------------S---- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 GGCGCATCTACCGGTTTTTGTCGCAGCGGATGTCGCCCCCCTGAAGCAGC chr7A_2 GGCGCATCTACCGGTTTTTGTCGCAGCGGATGTCGCCCCCCTGAAGCAGC chr4A_5 GGCGCATCTACCGGTTTTTGTCGCAGCGGATGTCGCCCCCCTGAAGCAGC SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 GGCTTTGAATCGCAGTC-GGGAGTTTGCTAGGTCCCCCCCTCTTTTGACC chr7A_2 GGCTTTGAATCGCAGTC-GGGAGTTTGCTAGGTCCCCCCCTCTTTTGACC chr4A_5 GGCTTTGAATCGCAGTCTGGGAGTTTGCTAGGTCCCCCCCTCTTTTGACC SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 CCCCGAACTCTGTACAGATAGATGTGGGGAGTTGATGATGACTGGATG-- chr7A_2 CCCCGAACTCTGTACAGATAGATGTGGGGAGTTGATGATGACTGGATG-- chr4A_5 CCCCGAACTCTGTACAGATAGATGTGGGGAGTTGATGATGACTGGATGAT SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 -ATGATGCTTTTGGTTTGGTTTTCTGTAAAGAACACCAATTGTACAGTCG chr7A_2 -ATGATGCTTTTGGTTTGGTTTTCTGTAAAGAACACCAATTGTACAGTCG chr4A_5 GATGATGCTTTTGGTTTGGTTTTCTGTAAAGAACACCAATTGTACAGTCG SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 GATGGATACTTGTGCTAGTTCTGCATGCTTTTA-TTTTCTGTATGGTTGA chr7A_2 GATGGATACTTGTGCTAGTTCTGCATGCTTTTA-TTTTCTGTATGGTTGA chr4A_5 GATGGATACTTGTGCTAGTTCTGCATGCTTTTATTTTTCTGTATGGTTGA SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 AACTCAACTCAAGACAGGTCTAATCGGGTGATGCCAGTGTGGAAATATGA chr7A_2 AACTCAACTCAAGACGGGTCTAATCGGGTGATGCCAGTGTGGAAATATGA chr4A_5 AACTCAACTCAAGACGGGTCTAATCGGGTGATGCCAGTGTGGAAATATGA SNPs ---------------S---------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 ATCCCCGCATTGTGCATTGTGAGTCATTCCTGTGTCCATTTTATTATTAT chr7A_2 ATCCCCACATTGTGCATTATGAGTGATTCCTGTGTCAATTTTATTATTAT chr4A_5 ATCCCCACATTGTGCATTGTGAGTGATTCCTGTGTCCATTTTATTATTAT SNPs ------S-----------------S------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 GCAGAACTTATTTCTTTCTTTT------ATGATGATTCATCTTCATCCAG chr7A_2 GCAGAGCTTATTTCTTCCTTGTATGACGATGATGATTCATCTTCACCCAG chr4A_5 GCACAACT--TTTCTTTCTTAT------GTGATGATTCATCTTCATCCAG SNPs --------------------S----------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 AATTTTTACAATGCTCATATATCTACCTGATCCTACTAGCAATGGAATG- chr7A_2 AATTT--ACAATGCTCTTATATCTATCTGATCCTACTAGTAATTCACTTT chr4A_5 AATTT--ACAATGCTCATATATCTACCTGATCCTACAAGCAATGGAATGA SNPs -----SS------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 -------------------------------------------------- chr7A_2 CAGAGTTTGTTTGCATCCACATGTTTGAACATGAGCGGCCCAATGCGCCA chr4A_5 TTAAATG------------------------------------------- SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 -------------------------------------------------- chr7A_2 CTATATATGCATTTGCAATGTCCTGAAAATTTAGGGTTTGAATGATTGCT chr4A_5 -------------------------------------------------- SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 -------------------------------------------------- chr7A_2 CAGTTCCATAGGTAATCTTGATTTTTGCAAGAATAGAATACCATTCCAAA chr4A_5 -------------------------------------------------- SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 -------------------------------------------------- chr7A_2 ATTTATAATGCTCAGACAGATTAGAGAGATTATCATGAGATGATTAGATG chr4A_5 -------------------------------------------------- SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 -------------------------------------------------- chr7A_2 GTTGCCTCCTCTTTACAGGTGGGGTCAAATCCACACTTAGTTAACTTGAA chr4A_5 -------------------------------------------------- SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 ----------------------------------ATTAAATGATGGCCTC chr7A_2 AGTTTAGATTACTGAGTGAACTTGTGAAGAAATTATTAAATGATGGCCTC chr4A_5 -------------------------------------------------- SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 GCCTTCGTCTTGGAAGTTCACTGAGTTGTGGACAATGAACTAGTTAGATG chr7A_2 ATCTTCGTCTTGGAAGTTCACTTAGTTGTGGACAATGAACTAGTTAGATG chr4A_5 -------------------------------------------------- SNPs SS--------------------S--------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 TTCTTGGCAAAGCATCACTTTCAGTTTTTTGTTTGCAAGCAGACACATAT chr7A_2 TTCTTGGCAAAACATCACTTTCAGTTTTTTGTTTGCAAGCAGGCACATAT chr4A_5 -------------------------------------------------- SNPs -----------S------------------------------S------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 TT--------------------------------GAAATTGCAATGTCCT chr7A_2 TTGAACATGGGTGGCCCAATGTGCCACTATATCTGAAATTGTAATGTCCT chr4A_5 -------------------------------------------------- SNPs -----------------------------------------S-------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 GAAACTTTAGGGTTTGAGTGATTGTTCCACTCCCATAGGTGATCATGGTT chr7A_2 GAAAATTTAGGGTTTGAATGATTGTTCAACTCCCATAGGTGATCATGGTT chr4A_5 -------------------------------------------------- SNPs ----S------------S---------S---------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 TTGTTAAGAATAGAATACCATTAGCTCAGCCTTATGTAATAT-ATATGTA chr7A_2 TTGTTAAGAATAGAATACCATTAGCTCAGCCTTATATAAAATAATATGTA chr4A_5 -------------------------------------------------- SNPs -----------------------------------S---S---------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 ATCTCTGTTGTGGATACAAAGTTAACTCCCGCATCGAACCTCAACTCACA chr7A_2 ATCTCTGTTGTTGATACAAAGTTAACTCCCACATCGAACCTCAACTCACA chr4A_5 -------------------------------------------------- SNPs -----------S------------------S------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 ------------------------------GCATCGAACCTCAACTCACA input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 CGTTTCAAGGCCGACGAAGTAC-ACCTATATCAAACACAAATCTGGCTAC chr7A_2 CGTTTCAAGGTCGACGAAGTACAACCTATACCAAACACAAATCTGGCTAC chr4A_5 -------------------------------------------------- SNPs ----------S-------------------S------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 C------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 AGCTAAGTTTACATTTCCTCGAAGCCGCACAGTTCTCACGGATT------ chr7A_2 AGCTAAGTTTACATTTCCTCGAAGCCGCACAGTTCTCACGGATATGGAGC chr4A_5 -------------------------------------------------- SNPs -------------------------------------------S------ forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 -------------------------------------------------- chr7D_1_TraesCS7D01G003000 ---------AGATCCATTAACTGATTAGATCGAAGGATGTCAACGGTTTC chr7A_2 ATCATGTTGAGATCCATTAACTGATTAGATCGAAGGATGTCAACGGTTTC chr4A_5 -------------------------------------------------- SNPs -------------------------------------------------- forward_443 -------------------------------------------------- reverse_2139 -------------------------------------------------- forward_1292 -------------------------------------------------- reverse_2794 -------------------------------------------------- forward_2790 -------------------------------------------------- reverse_4784 -------------------------------------------------- forward_2818 -------------------------------------------------- reverse_4785 -------------------------------------------------- forward_3613 -------------------------------------------------- reverse_5442 -------------------------------------------------- forward_3922 -------------------------------------------------- reverse_5713 -------------------------------------------------- forward_5460 -------------------------------------------------- reverse_6931 -------------------------------------------------- input_sequence_11914 ----- chr7D_1_TraesCS7D01G003000 CAAGT chr7A_2 CAAGT chr4A_5 ----- SNPs ----- forward_443 ----- reverse_2139 ----- forward_1292 ----- reverse_2794 ----- forward_2790 ----- reverse_4784 ----- forward_2818 ----- reverse_4785 ----- forward_3613 ----- reverse_5442 ----- forward_3922 ----- reverse_5713 ----- forward_5460 ----- reverse_6931 -----