Multiple sequence alignment - TraesCS7B01G469000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G469000 chr7B 100.000 3654 0 0 1 3654 725984654 725981001 0.000000e+00 6748.0
1 TraesCS7B01G469000 chr7B 95.745 188 5 3 2903 3088 129963822 129963636 2.130000e-77 300.0
2 TraesCS7B01G469000 chr7B 81.955 133 18 4 3 130 736882901 736883032 1.390000e-19 108.0
3 TraesCS7B01G469000 chr7D 96.566 990 28 3 929 1918 626147464 626146481 0.000000e+00 1635.0
4 TraesCS7B01G469000 chr7D 95.276 868 35 3 1938 2800 626146491 626145625 0.000000e+00 1371.0
5 TraesCS7B01G469000 chr7D 90.685 569 32 8 3088 3648 42920852 42921407 0.000000e+00 737.0
6 TraesCS7B01G469000 chr7D 90.019 521 26 10 2 496 626148446 626147926 0.000000e+00 651.0
7 TraesCS7B01G469000 chr7D 77.804 428 60 16 3247 3650 63557389 63557805 7.890000e-57 231.0
8 TraesCS7B01G469000 chr7D 82.036 167 23 6 771 931 617771525 617771360 6.360000e-28 135.0
9 TraesCS7B01G469000 chr7D 91.919 99 4 3 674 769 626147553 626147456 6.360000e-28 135.0
10 TraesCS7B01G469000 chr7A 92.653 980 66 3 935 1914 722302525 722303498 0.000000e+00 1406.0
11 TraesCS7B01G469000 chr7A 95.539 807 26 1 1960 2766 722303500 722304296 0.000000e+00 1282.0
12 TraesCS7B01G469000 chr7A 85.823 395 36 12 181 561 722301844 722302232 5.680000e-108 401.0
13 TraesCS7B01G469000 chr1A 90.300 567 43 5 3090 3648 507752402 507751840 0.000000e+00 732.0
14 TraesCS7B01G469000 chr1A 77.189 491 91 11 1119 1591 560837566 560838053 2.160000e-67 267.0
15 TraesCS7B01G469000 chr1A 90.278 72 5 1 2804 2875 507752552 507752483 3.890000e-15 93.5
16 TraesCS7B01G469000 chr2A 87.852 568 54 6 3090 3648 132164357 132163796 0.000000e+00 652.0
17 TraesCS7B01G469000 chr5B 85.640 578 55 9 3090 3652 710927114 710926550 1.890000e-162 582.0
18 TraesCS7B01G469000 chr5B 76.509 762 151 17 1109 1853 586534337 586535087 1.230000e-104 390.0
19 TraesCS7B01G469000 chr5B 95.722 187 6 2 2904 3088 584166857 584167043 2.130000e-77 300.0
20 TraesCS7B01G469000 chr5B 95.652 184 6 2 2907 3088 610350255 610350072 9.920000e-76 294.0
21 TraesCS7B01G469000 chr3B 84.864 588 44 20 3090 3644 617269361 617269936 5.330000e-153 551.0
22 TraesCS7B01G469000 chr3B 94.764 191 6 4 2901 3088 131528333 131528522 9.920000e-76 294.0
23 TraesCS7B01G469000 chr3B 82.456 171 19 7 771 932 225320451 225320283 4.920000e-29 139.0
24 TraesCS7B01G469000 chr1B 79.317 498 88 6 1109 1591 645896364 645895867 5.850000e-88 335.0
25 TraesCS7B01G469000 chr1B 96.216 185 5 2 2907 3089 92553610 92553794 5.930000e-78 302.0
26 TraesCS7B01G469000 chr1B 95.263 190 7 2 2901 3088 36355580 36355391 2.130000e-77 300.0
27 TraesCS7B01G469000 chr1B 94.330 194 8 3 2897 3088 17801538 17801730 9.920000e-76 294.0
28 TraesCS7B01G469000 chr1B 94.301 193 9 2 2904 3094 36912293 36912101 9.920000e-76 294.0
29 TraesCS7B01G469000 chr1B 77.264 497 96 9 1111 1591 645913088 645912593 3.590000e-70 276.0
30 TraesCS7B01G469000 chr1B 76.495 485 97 12 1118 1591 645904289 645903811 7.840000e-62 248.0
31 TraesCS7B01G469000 chr1B 83.832 167 17 8 771 930 628047831 628047668 2.270000e-32 150.0
32 TraesCS7B01G469000 chr1B 82.927 164 18 8 771 929 39298864 39299022 4.920000e-29 139.0
33 TraesCS7B01G469000 chr4B 95.238 189 7 2 2902 3088 649583194 649583382 7.670000e-77 298.0
34 TraesCS7B01G469000 chr1D 79.947 374 67 3 1119 1485 467848613 467848985 6.010000e-68 268.0
35 TraesCS7B01G469000 chr1D 86.875 160 19 2 771 929 246105720 246105562 1.040000e-40 178.0
36 TraesCS7B01G469000 chr5D 78.009 432 59 16 3247 3653 391057409 391056989 4.720000e-59 239.0
37 TraesCS7B01G469000 chr5D 84.000 125 20 0 1374 1498 478596778 478596902 1.780000e-23 121.0
38 TraesCS7B01G469000 chr4D 78.009 432 59 16 3247 3653 42333537 42333117 4.720000e-59 239.0
39 TraesCS7B01G469000 chr4D 84.337 166 19 5 771 930 303539771 303539607 4.890000e-34 156.0
40 TraesCS7B01G469000 chr2D 77.726 431 61 16 3247 3653 629850368 629849949 7.890000e-57 231.0
41 TraesCS7B01G469000 chr2D 80.556 180 25 10 771 942 2445397 2445220 2.960000e-26 130.0
42 TraesCS7B01G469000 chr3D 72.834 681 168 10 1118 1791 41050659 41051329 2.210000e-52 217.0
43 TraesCS7B01G469000 chr3D 83.929 168 18 7 771 931 91684755 91684920 6.320000e-33 152.0
44 TraesCS7B01G469000 chr3D 81.714 175 24 7 771 939 104098867 104099039 4.920000e-29 139.0
45 TraesCS7B01G469000 chr3A 85.606 132 16 2 3 131 736387052 736386921 6.360000e-28 135.0
46 TraesCS7B01G469000 chr3A 86.408 103 7 4 30 130 327825221 327825124 4.990000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G469000 chr7B 725981001 725984654 3653 True 6748.000000 6748 100.000000 1 3654 1 chr7B.!!$R2 3653
1 TraesCS7B01G469000 chr7D 626145625 626148446 2821 True 948.000000 1635 93.445000 2 2800 4 chr7D.!!$R2 2798
2 TraesCS7B01G469000 chr7D 42920852 42921407 555 False 737.000000 737 90.685000 3088 3648 1 chr7D.!!$F1 560
3 TraesCS7B01G469000 chr7A 722301844 722304296 2452 False 1029.666667 1406 91.338333 181 2766 3 chr7A.!!$F1 2585
4 TraesCS7B01G469000 chr1A 507751840 507752552 712 True 412.750000 732 90.289000 2804 3648 2 chr1A.!!$R1 844
5 TraesCS7B01G469000 chr2A 132163796 132164357 561 True 652.000000 652 87.852000 3090 3648 1 chr2A.!!$R1 558
6 TraesCS7B01G469000 chr5B 710926550 710927114 564 True 582.000000 582 85.640000 3090 3652 1 chr5B.!!$R2 562
7 TraesCS7B01G469000 chr5B 586534337 586535087 750 False 390.000000 390 76.509000 1109 1853 1 chr5B.!!$F2 744
8 TraesCS7B01G469000 chr3B 617269361 617269936 575 False 551.000000 551 84.864000 3090 3644 1 chr3B.!!$F2 554
9 TraesCS7B01G469000 chr3D 41050659 41051329 670 False 217.000000 217 72.834000 1118 1791 1 chr3D.!!$F1 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
890 1306 0.034756 ATGGCAGCTTACACGTGACA 59.965 50.0 25.01 6.53 32.52 3.58 F
891 1307 0.034756 TGGCAGCTTACACGTGACAT 59.965 50.0 25.01 1.74 0.00 3.06 F
1864 2292 0.458543 AGACGGTGTCATCGACATGC 60.459 55.0 13.53 0.00 44.63 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2044 2472 0.179100 CCATCGCCCACTCTAGTGTG 60.179 60.0 16.35 16.35 44.21 3.82 R
2072 2500 0.674895 ATCGCTGCTGGGTTCTTCAC 60.675 55.0 7.52 0.00 0.00 3.18 R
3341 3857 0.319211 CGGAGACTTGCCGTGTACAA 60.319 55.0 0.00 0.00 43.66 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 7.161404 AGAAACATCATGTGTGCTCTAACTTA 58.839 34.615 0.00 0.00 41.14 2.24
126 127 5.063880 AGAAAAATTACACTCAGCGGAAGT 58.936 37.500 0.00 0.00 0.00 3.01
141 159 1.001641 AAGTCCTCCATGCCACTGC 60.002 57.895 0.00 0.00 38.26 4.40
161 179 1.146263 CCTCCATCCCGTAGCAACC 59.854 63.158 0.00 0.00 0.00 3.77
164 182 0.986019 TCCATCCCGTAGCAACCCAT 60.986 55.000 0.00 0.00 0.00 4.00
166 184 0.180171 CATCCCGTAGCAACCCATGA 59.820 55.000 0.00 0.00 0.00 3.07
167 185 0.469917 ATCCCGTAGCAACCCATGAG 59.530 55.000 0.00 0.00 0.00 2.90
306 328 7.312154 GTGCATGACCAAGAAATTACATGTTA 58.688 34.615 2.30 0.00 37.83 2.41
312 334 7.880713 TGACCAAGAAATTACATGTTAGCACTA 59.119 33.333 2.30 0.00 0.00 2.74
337 359 4.460263 TGGACAGGGATATATTTGTGTGC 58.540 43.478 3.96 5.46 0.00 4.57
466 492 0.791422 GCTGAGCTCGATGATGCATC 59.209 55.000 20.14 20.14 37.50 3.91
482 517 1.014044 CATCCAGTGTTCGGTCCACG 61.014 60.000 0.00 0.00 46.11 4.94
503 781 5.621228 CACGTCACATGCTTAGAAAAACTTC 59.379 40.000 0.00 0.00 0.00 3.01
508 786 7.168135 GTCACATGCTTAGAAAAACTTCTTTGG 59.832 37.037 0.00 0.00 32.72 3.28
531 809 2.156098 GGTGTGGAAATTTACGGCTCA 58.844 47.619 0.00 0.00 0.00 4.26
534 812 3.689649 GTGTGGAAATTTACGGCTCAGAT 59.310 43.478 0.00 0.00 0.00 2.90
551 829 2.868583 CAGATCTGGAATTAGTGGTGCG 59.131 50.000 15.38 0.00 0.00 5.34
555 833 0.958382 TGGAATTAGTGGTGCGGCAC 60.958 55.000 24.43 24.43 0.00 5.01
569 847 1.735360 GGCACGTGCGGGTACTATA 59.265 57.895 32.35 0.00 43.26 1.31
570 848 0.316204 GGCACGTGCGGGTACTATAT 59.684 55.000 32.35 0.00 43.26 0.86
571 849 1.269936 GGCACGTGCGGGTACTATATT 60.270 52.381 32.35 0.00 43.26 1.28
579 857 4.021719 GTGCGGGTACTATATTCCTTAGCA 60.022 45.833 0.00 0.00 0.00 3.49
583 861 4.381718 GGGTACTATATTCCTTAGCAGCCG 60.382 50.000 0.00 0.00 0.00 5.52
647 1017 1.480954 GGAGGATGTACGCCTTCTTCA 59.519 52.381 8.34 0.00 35.44 3.02
648 1018 2.093658 GGAGGATGTACGCCTTCTTCAA 60.094 50.000 8.34 0.00 35.44 2.69
649 1019 2.930682 GAGGATGTACGCCTTCTTCAAC 59.069 50.000 8.34 0.00 35.44 3.18
650 1020 2.567615 AGGATGTACGCCTTCTTCAACT 59.432 45.455 1.46 0.00 29.44 3.16
651 1021 3.008049 AGGATGTACGCCTTCTTCAACTT 59.992 43.478 1.46 0.00 29.44 2.66
652 1022 3.751698 GGATGTACGCCTTCTTCAACTTT 59.248 43.478 0.00 0.00 0.00 2.66
653 1023 4.933400 GGATGTACGCCTTCTTCAACTTTA 59.067 41.667 0.00 0.00 0.00 1.85
654 1024 5.063564 GGATGTACGCCTTCTTCAACTTTAG 59.936 44.000 0.00 0.00 0.00 1.85
655 1025 3.744426 TGTACGCCTTCTTCAACTTTAGC 59.256 43.478 0.00 0.00 0.00 3.09
656 1026 2.152016 ACGCCTTCTTCAACTTTAGCC 58.848 47.619 0.00 0.00 0.00 3.93
657 1027 1.468914 CGCCTTCTTCAACTTTAGCCC 59.531 52.381 0.00 0.00 0.00 5.19
658 1028 2.796557 GCCTTCTTCAACTTTAGCCCT 58.203 47.619 0.00 0.00 0.00 5.19
659 1029 2.750166 GCCTTCTTCAACTTTAGCCCTC 59.250 50.000 0.00 0.00 0.00 4.30
660 1030 3.560239 GCCTTCTTCAACTTTAGCCCTCT 60.560 47.826 0.00 0.00 0.00 3.69
661 1031 4.323562 GCCTTCTTCAACTTTAGCCCTCTA 60.324 45.833 0.00 0.00 0.00 2.43
662 1032 5.423886 CCTTCTTCAACTTTAGCCCTCTAG 58.576 45.833 0.00 0.00 0.00 2.43
690 1060 9.341899 GTATGTGTAAACTTTATTTTGGCAGAG 57.658 33.333 0.00 0.00 0.00 3.35
711 1111 6.481644 CAGAGCAGGGTTGAGATATTTTCTAC 59.518 42.308 0.00 0.00 33.74 2.59
712 1112 6.385467 AGAGCAGGGTTGAGATATTTTCTACT 59.615 38.462 0.00 0.00 33.74 2.57
718 1119 9.838339 AGGGTTGAGATATTTTCTACTATGTTG 57.162 33.333 3.96 0.00 33.74 3.33
768 1184 4.886247 CGAAAGTCTCGGAGAAGTCTAT 57.114 45.455 9.72 0.00 44.20 1.98
769 1185 4.593157 CGAAAGTCTCGGAGAAGTCTATG 58.407 47.826 9.72 0.00 44.20 2.23
770 1186 4.095185 CGAAAGTCTCGGAGAAGTCTATGT 59.905 45.833 9.72 0.00 44.20 2.29
771 1187 5.570234 AAAGTCTCGGAGAAGTCTATGTC 57.430 43.478 9.72 0.00 34.09 3.06
772 1188 4.497291 AGTCTCGGAGAAGTCTATGTCT 57.503 45.455 9.72 0.00 34.09 3.41
773 1189 5.617528 AGTCTCGGAGAAGTCTATGTCTA 57.382 43.478 9.72 0.00 34.09 2.59
774 1190 5.607477 AGTCTCGGAGAAGTCTATGTCTAG 58.393 45.833 9.72 0.00 34.09 2.43
775 1191 5.364446 AGTCTCGGAGAAGTCTATGTCTAGA 59.636 44.000 9.72 0.00 34.09 2.43
776 1192 6.042781 AGTCTCGGAGAAGTCTATGTCTAGAT 59.957 42.308 9.72 0.00 34.05 1.98
777 1193 6.147164 GTCTCGGAGAAGTCTATGTCTAGATG 59.853 46.154 9.72 0.00 34.05 2.90
778 1194 5.931294 TCGGAGAAGTCTATGTCTAGATGT 58.069 41.667 0.00 0.00 36.40 3.06
779 1195 5.760743 TCGGAGAAGTCTATGTCTAGATGTG 59.239 44.000 0.00 0.00 36.40 3.21
780 1196 5.760743 CGGAGAAGTCTATGTCTAGATGTGA 59.239 44.000 0.00 0.00 36.40 3.58
781 1197 6.293190 CGGAGAAGTCTATGTCTAGATGTGAC 60.293 46.154 0.00 3.14 36.40 3.67
782 1198 6.544197 GGAGAAGTCTATGTCTAGATGTGACA 59.456 42.308 15.41 0.00 46.58 3.58
820 1236 8.830580 CATCTAACCTGATGTTTACTATGTTGG 58.169 37.037 0.00 0.00 39.05 3.77
821 1237 7.913789 TCTAACCTGATGTTTACTATGTTGGT 58.086 34.615 0.00 0.00 38.42 3.67
822 1238 9.038072 TCTAACCTGATGTTTACTATGTTGGTA 57.962 33.333 0.00 0.00 38.42 3.25
823 1239 9.314321 CTAACCTGATGTTTACTATGTTGGTAG 57.686 37.037 0.00 0.00 38.42 3.18
824 1240 7.253905 ACCTGATGTTTACTATGTTGGTAGT 57.746 36.000 0.00 0.00 38.42 2.73
825 1241 7.686434 ACCTGATGTTTACTATGTTGGTAGTT 58.314 34.615 0.00 0.00 36.39 2.24
826 1242 8.161425 ACCTGATGTTTACTATGTTGGTAGTTT 58.839 33.333 0.00 0.00 36.39 2.66
827 1243 9.010029 CCTGATGTTTACTATGTTGGTAGTTTT 57.990 33.333 0.00 0.00 36.39 2.43
853 1269 8.900983 TTTTTGTGCCAGCTTTTATTTATTCT 57.099 26.923 0.00 0.00 0.00 2.40
854 1270 8.900983 TTTTGTGCCAGCTTTTATTTATTCTT 57.099 26.923 0.00 0.00 0.00 2.52
855 1271 8.900983 TTTGTGCCAGCTTTTATTTATTCTTT 57.099 26.923 0.00 0.00 0.00 2.52
856 1272 7.887996 TGTGCCAGCTTTTATTTATTCTTTG 57.112 32.000 0.00 0.00 0.00 2.77
857 1273 7.441017 TGTGCCAGCTTTTATTTATTCTTTGT 58.559 30.769 0.00 0.00 0.00 2.83
858 1274 7.930865 TGTGCCAGCTTTTATTTATTCTTTGTT 59.069 29.630 0.00 0.00 0.00 2.83
859 1275 8.223100 GTGCCAGCTTTTATTTATTCTTTGTTG 58.777 33.333 0.00 0.00 0.00 3.33
860 1276 7.095271 TGCCAGCTTTTATTTATTCTTTGTTGC 60.095 33.333 0.00 0.00 0.00 4.17
861 1277 7.118245 GCCAGCTTTTATTTATTCTTTGTTGCT 59.882 33.333 0.00 0.00 0.00 3.91
862 1278 8.437742 CCAGCTTTTATTTATTCTTTGTTGCTG 58.562 33.333 0.00 0.00 40.58 4.41
863 1279 8.981647 CAGCTTTTATTTATTCTTTGTTGCTGT 58.018 29.630 0.00 0.00 37.47 4.40
864 1280 8.981647 AGCTTTTATTTATTCTTTGTTGCTGTG 58.018 29.630 0.00 0.00 0.00 3.66
865 1281 8.764287 GCTTTTATTTATTCTTTGTTGCTGTGT 58.236 29.630 0.00 0.00 0.00 3.72
874 1290 8.761575 ATTCTTTGTTGCTGTGTTATTTATGG 57.238 30.769 0.00 0.00 0.00 2.74
875 1291 6.155827 TCTTTGTTGCTGTGTTATTTATGGC 58.844 36.000 0.00 0.00 0.00 4.40
876 1292 5.459536 TTGTTGCTGTGTTATTTATGGCA 57.540 34.783 0.00 0.00 0.00 4.92
877 1293 5.058149 TGTTGCTGTGTTATTTATGGCAG 57.942 39.130 0.00 0.00 0.00 4.85
878 1294 3.781079 TGCTGTGTTATTTATGGCAGC 57.219 42.857 7.31 7.31 46.47 5.25
879 1295 3.355378 TGCTGTGTTATTTATGGCAGCT 58.645 40.909 14.11 0.00 46.44 4.24
880 1296 3.763360 TGCTGTGTTATTTATGGCAGCTT 59.237 39.130 14.11 0.00 46.44 3.74
881 1297 4.946772 TGCTGTGTTATTTATGGCAGCTTA 59.053 37.500 14.11 0.00 46.44 3.09
882 1298 5.163663 TGCTGTGTTATTTATGGCAGCTTAC 60.164 40.000 14.11 0.00 46.44 2.34
883 1299 5.163663 GCTGTGTTATTTATGGCAGCTTACA 60.164 40.000 7.04 0.00 43.94 2.41
884 1300 6.189677 TGTGTTATTTATGGCAGCTTACAC 57.810 37.500 11.16 11.16 35.25 2.90
885 1301 5.163804 TGTGTTATTTATGGCAGCTTACACG 60.164 40.000 12.46 0.00 36.93 4.49
886 1302 4.938832 TGTTATTTATGGCAGCTTACACGT 59.061 37.500 0.00 0.00 0.00 4.49
887 1303 5.163804 TGTTATTTATGGCAGCTTACACGTG 60.164 40.000 15.48 15.48 0.00 4.49
888 1304 2.753055 TTATGGCAGCTTACACGTGA 57.247 45.000 25.01 2.68 0.00 4.35
889 1305 2.004583 TATGGCAGCTTACACGTGAC 57.995 50.000 25.01 8.51 0.00 3.67
890 1306 0.034756 ATGGCAGCTTACACGTGACA 59.965 50.000 25.01 6.53 32.52 3.58
891 1307 0.034756 TGGCAGCTTACACGTGACAT 59.965 50.000 25.01 1.74 0.00 3.06
892 1308 0.721718 GGCAGCTTACACGTGACATC 59.278 55.000 25.01 8.46 0.00 3.06
893 1309 0.721718 GCAGCTTACACGTGACATCC 59.278 55.000 25.01 6.23 0.00 3.51
894 1310 1.673033 GCAGCTTACACGTGACATCCT 60.673 52.381 25.01 8.51 0.00 3.24
895 1311 2.688507 CAGCTTACACGTGACATCCTT 58.311 47.619 25.01 0.00 0.00 3.36
896 1312 3.845178 CAGCTTACACGTGACATCCTTA 58.155 45.455 25.01 0.00 0.00 2.69
897 1313 4.242475 CAGCTTACACGTGACATCCTTAA 58.758 43.478 25.01 7.44 0.00 1.85
898 1314 4.688879 CAGCTTACACGTGACATCCTTAAA 59.311 41.667 25.01 1.37 0.00 1.52
899 1315 5.178623 CAGCTTACACGTGACATCCTTAAAA 59.821 40.000 25.01 0.00 0.00 1.52
900 1316 5.761234 AGCTTACACGTGACATCCTTAAAAA 59.239 36.000 25.01 0.00 0.00 1.94
931 1347 9.645059 TCTAGATGTGAATTAGACAAACTGAAG 57.355 33.333 0.00 0.00 0.00 3.02
932 1348 9.429359 CTAGATGTGAATTAGACAAACTGAAGT 57.571 33.333 0.00 0.00 0.00 3.01
933 1349 8.316640 AGATGTGAATTAGACAAACTGAAGTC 57.683 34.615 0.00 0.00 35.02 3.01
934 1350 8.153550 AGATGTGAATTAGACAAACTGAAGTCT 58.846 33.333 0.00 0.00 46.19 3.24
935 1351 9.424319 GATGTGAATTAGACAAACTGAAGTCTA 57.576 33.333 0.00 0.00 42.92 2.59
936 1352 9.950496 ATGTGAATTAGACAAACTGAAGTCTAT 57.050 29.630 0.00 0.00 44.29 1.98
988 1404 1.815421 GGCATGCGACGTCCTTCAT 60.815 57.895 12.44 8.27 0.00 2.57
1018 1434 0.772124 AATGGAGGACACCACCACCT 60.772 55.000 8.93 0.00 46.28 4.00
1019 1435 1.201429 ATGGAGGACACCACCACCTC 61.201 60.000 8.93 0.00 46.28 3.85
1021 1437 2.529389 AGGACACCACCACCTCCC 60.529 66.667 0.00 0.00 0.00 4.30
1022 1438 2.852075 GGACACCACCACCTCCCA 60.852 66.667 0.00 0.00 0.00 4.37
1043 1459 2.763448 AGTACTACTCCGTCTACCTCGT 59.237 50.000 0.00 0.00 0.00 4.18
1094 1510 4.216257 GCTTGCAGTTACATGGAGAAAGAA 59.784 41.667 0.00 0.00 0.00 2.52
1105 1521 3.360867 TGGAGAAAGAAGGCAAACAACA 58.639 40.909 0.00 0.00 0.00 3.33
1258 1677 1.321474 CTCAGTGCCCACAATTGTGT 58.679 50.000 31.20 14.19 44.21 3.72
1266 1685 1.673400 CCCACAATTGTGTTGTCGTCA 59.327 47.619 31.20 0.00 44.21 4.35
1492 1911 3.005539 AGGTCGCCACCATGCTCT 61.006 61.111 2.46 0.00 46.68 4.09
1609 2037 2.925170 ACTCCAAGCAGCGGGACT 60.925 61.111 4.84 0.00 0.00 3.85
1639 2067 4.081254 TGCATGAGCTTGACAGAATAGTCT 60.081 41.667 0.00 0.00 42.74 3.24
1671 2099 2.098831 GCTTAACACGGCGGACCTC 61.099 63.158 13.24 0.00 0.00 3.85
1864 2292 0.458543 AGACGGTGTCATCGACATGC 60.459 55.000 13.53 0.00 44.63 4.06
1918 2346 8.314021 GCATCCCATCCATATTGTATATATCGA 58.686 37.037 0.00 0.00 0.00 3.59
1919 2347 9.866798 CATCCCATCCATATTGTATATATCGAG 57.133 37.037 0.00 0.00 0.00 4.04
1920 2348 9.607333 ATCCCATCCATATTGTATATATCGAGT 57.393 33.333 0.00 0.00 0.00 4.18
1921 2349 9.434275 TCCCATCCATATTGTATATATCGAGTT 57.566 33.333 0.00 0.00 0.00 3.01
1937 2365 5.899120 TCGAGTTAGCTACATTTCAGACT 57.101 39.130 0.00 0.00 0.00 3.24
1938 2366 5.641709 TCGAGTTAGCTACATTTCAGACTG 58.358 41.667 0.00 0.00 0.00 3.51
1939 2367 5.183331 TCGAGTTAGCTACATTTCAGACTGT 59.817 40.000 1.59 0.00 0.00 3.55
1940 2368 6.373495 TCGAGTTAGCTACATTTCAGACTGTA 59.627 38.462 1.59 0.00 0.00 2.74
1941 2369 7.067129 TCGAGTTAGCTACATTTCAGACTGTAT 59.933 37.037 1.59 0.00 0.00 2.29
1942 2370 8.343366 CGAGTTAGCTACATTTCAGACTGTATA 58.657 37.037 1.59 0.00 0.00 1.47
2006 2434 1.732941 TATTGATTTGACCTGCGCGT 58.267 45.000 8.43 0.00 0.00 6.01
2544 2972 1.244019 GCGCCCAACATCTCAAACCT 61.244 55.000 0.00 0.00 0.00 3.50
2662 3090 2.910977 TCCACCTCTTTAAGACCCTTCC 59.089 50.000 0.00 0.00 0.00 3.46
2682 3114 3.379372 TCCGAGTGTACATGTACTAAGCC 59.621 47.826 30.69 16.72 37.00 4.35
2722 3154 5.922544 GGAGATTGGTGAAACTGATGTTTTG 59.077 40.000 0.00 0.00 45.36 2.44
2726 3158 3.698539 TGGTGAAACTGATGTTTTGCTGA 59.301 39.130 0.00 0.00 45.36 4.26
2727 3159 4.044426 GGTGAAACTGATGTTTTGCTGAC 58.956 43.478 0.00 0.00 45.36 3.51
2833 3266 1.697982 GTACCCTATACTGCTTGGGGG 59.302 57.143 0.00 0.00 43.72 5.40
2885 3367 7.373778 ACCGTTAATTTCATTCTTCAGTACC 57.626 36.000 0.00 0.00 0.00 3.34
2905 3388 2.372172 CCTGAGGCCTAAACGGGATTAT 59.628 50.000 4.42 0.00 32.36 1.28
2906 3389 3.403038 CTGAGGCCTAAACGGGATTATG 58.597 50.000 4.42 0.00 0.00 1.90
2907 3390 2.105821 TGAGGCCTAAACGGGATTATGG 59.894 50.000 4.42 0.00 0.00 2.74
2908 3391 2.105993 GAGGCCTAAACGGGATTATGGT 59.894 50.000 4.42 0.00 0.00 3.55
2909 3392 2.158667 AGGCCTAAACGGGATTATGGTG 60.159 50.000 1.29 0.00 0.00 4.17
2910 3393 2.422377 GGCCTAAACGGGATTATGGTGT 60.422 50.000 0.00 0.00 0.00 4.16
2911 3394 3.284617 GCCTAAACGGGATTATGGTGTT 58.715 45.455 0.00 0.00 0.00 3.32
2912 3395 3.066203 GCCTAAACGGGATTATGGTGTTG 59.934 47.826 0.00 0.00 0.00 3.33
2913 3396 4.266714 CCTAAACGGGATTATGGTGTTGT 58.733 43.478 0.00 0.00 0.00 3.32
2914 3397 4.703093 CCTAAACGGGATTATGGTGTTGTT 59.297 41.667 0.00 0.00 0.00 2.83
2915 3398 5.184287 CCTAAACGGGATTATGGTGTTGTTT 59.816 40.000 0.00 0.00 33.40 2.83
2916 3399 4.513198 AACGGGATTATGGTGTTGTTTG 57.487 40.909 0.00 0.00 0.00 2.93
2917 3400 3.492337 ACGGGATTATGGTGTTGTTTGT 58.508 40.909 0.00 0.00 0.00 2.83
2918 3401 3.892588 ACGGGATTATGGTGTTGTTTGTT 59.107 39.130 0.00 0.00 0.00 2.83
2919 3402 4.342665 ACGGGATTATGGTGTTGTTTGTTT 59.657 37.500 0.00 0.00 0.00 2.83
2920 3403 4.920927 CGGGATTATGGTGTTGTTTGTTTC 59.079 41.667 0.00 0.00 0.00 2.78
2921 3404 5.278758 CGGGATTATGGTGTTGTTTGTTTCT 60.279 40.000 0.00 0.00 0.00 2.52
2922 3405 6.156519 GGGATTATGGTGTTGTTTGTTTCTC 58.843 40.000 0.00 0.00 0.00 2.87
2923 3406 6.015434 GGGATTATGGTGTTGTTTGTTTCTCT 60.015 38.462 0.00 0.00 0.00 3.10
2924 3407 7.175990 GGGATTATGGTGTTGTTTGTTTCTCTA 59.824 37.037 0.00 0.00 0.00 2.43
2925 3408 8.237267 GGATTATGGTGTTGTTTGTTTCTCTAG 58.763 37.037 0.00 0.00 0.00 2.43
2926 3409 8.691661 ATTATGGTGTTGTTTGTTTCTCTAGT 57.308 30.769 0.00 0.00 0.00 2.57
2927 3410 6.619801 ATGGTGTTGTTTGTTTCTCTAGTC 57.380 37.500 0.00 0.00 0.00 2.59
2928 3411 4.879545 TGGTGTTGTTTGTTTCTCTAGTCC 59.120 41.667 0.00 0.00 0.00 3.85
2929 3412 5.123936 GGTGTTGTTTGTTTCTCTAGTCCT 58.876 41.667 0.00 0.00 0.00 3.85
2930 3413 6.126997 TGGTGTTGTTTGTTTCTCTAGTCCTA 60.127 38.462 0.00 0.00 0.00 2.94
2931 3414 6.424207 GGTGTTGTTTGTTTCTCTAGTCCTAG 59.576 42.308 0.00 0.00 34.56 3.02
2932 3415 6.424207 GTGTTGTTTGTTTCTCTAGTCCTAGG 59.576 42.308 0.82 0.82 34.06 3.02
2933 3416 6.325545 TGTTGTTTGTTTCTCTAGTCCTAGGA 59.674 38.462 7.62 7.62 34.06 2.94
2934 3417 6.342338 TGTTTGTTTCTCTAGTCCTAGGAC 57.658 41.667 31.29 31.29 44.86 3.85
2948 3431 6.608539 GTCCTAGGACTTTTTCTAGTTCCT 57.391 41.667 31.12 0.00 41.57 3.36
2949 3432 6.399743 GTCCTAGGACTTTTTCTAGTTCCTG 58.600 44.000 31.12 0.00 41.57 3.86
2950 3433 5.484290 TCCTAGGACTTTTTCTAGTTCCTGG 59.516 44.000 7.62 0.00 33.10 4.45
2951 3434 4.642466 AGGACTTTTTCTAGTTCCTGGG 57.358 45.455 0.00 0.00 29.95 4.45
2952 3435 4.240323 AGGACTTTTTCTAGTTCCTGGGA 58.760 43.478 0.00 0.00 29.95 4.37
2953 3436 4.041815 AGGACTTTTTCTAGTTCCTGGGAC 59.958 45.833 0.00 0.00 29.95 4.46
2954 3437 4.041815 GGACTTTTTCTAGTTCCTGGGACT 59.958 45.833 13.27 13.27 0.00 3.85
2955 3438 5.456330 GGACTTTTTCTAGTTCCTGGGACTT 60.456 44.000 14.05 0.00 0.00 3.01
2956 3439 6.014771 ACTTTTTCTAGTTCCTGGGACTTT 57.985 37.500 14.05 0.00 0.00 2.66
2957 3440 6.432581 ACTTTTTCTAGTTCCTGGGACTTTT 58.567 36.000 14.05 0.00 0.00 2.27
2958 3441 6.895756 ACTTTTTCTAGTTCCTGGGACTTTTT 59.104 34.615 14.05 0.00 0.00 1.94
2959 3442 8.057011 ACTTTTTCTAGTTCCTGGGACTTTTTA 58.943 33.333 14.05 0.00 0.00 1.52
2960 3443 8.826293 TTTTTCTAGTTCCTGGGACTTTTTAA 57.174 30.769 14.05 0.94 0.00 1.52
2961 3444 8.826293 TTTTCTAGTTCCTGGGACTTTTTAAA 57.174 30.769 14.05 6.40 0.00 1.52
2962 3445 8.826293 TTTCTAGTTCCTGGGACTTTTTAAAA 57.174 30.769 14.05 4.75 0.00 1.52
2963 3446 8.826293 TTCTAGTTCCTGGGACTTTTTAAAAA 57.174 30.769 14.05 12.62 0.00 1.94
2965 3448 8.276477 TCTAGTTCCTGGGACTTTTTAAAAAGA 58.724 33.333 35.81 19.14 46.39 2.52
2966 3449 7.108841 AGTTCCTGGGACTTTTTAAAAAGAC 57.891 36.000 35.81 30.43 46.39 3.01
2967 3450 6.895756 AGTTCCTGGGACTTTTTAAAAAGACT 59.104 34.615 35.81 25.23 46.39 3.24
2968 3451 6.954487 TCCTGGGACTTTTTAAAAAGACTC 57.046 37.500 35.81 30.85 46.39 3.36
2969 3452 6.669631 TCCTGGGACTTTTTAAAAAGACTCT 58.330 36.000 35.81 20.21 46.39 3.24
2970 3453 6.771267 TCCTGGGACTTTTTAAAAAGACTCTC 59.229 38.462 35.81 26.45 46.39 3.20
2971 3454 6.546034 CCTGGGACTTTTTAAAAAGACTCTCA 59.454 38.462 35.81 28.66 46.39 3.27
2972 3455 7.068226 CCTGGGACTTTTTAAAAAGACTCTCAA 59.932 37.037 35.81 19.07 46.39 3.02
2973 3456 7.996385 TGGGACTTTTTAAAAAGACTCTCAAG 58.004 34.615 35.81 15.66 46.39 3.02
2974 3457 7.068226 TGGGACTTTTTAAAAAGACTCTCAAGG 59.932 37.037 35.81 14.93 46.39 3.61
2975 3458 7.284716 GGGACTTTTTAAAAAGACTCTCAAGGA 59.715 37.037 35.81 4.20 46.39 3.36
2976 3459 8.346300 GGACTTTTTAAAAAGACTCTCAAGGAG 58.654 37.037 35.81 14.44 46.39 3.69
2977 3460 8.226819 ACTTTTTAAAAAGACTCTCAAGGAGG 57.773 34.615 35.81 13.99 46.39 4.30
2978 3461 7.834681 ACTTTTTAAAAAGACTCTCAAGGAGGT 59.165 33.333 35.81 14.53 46.39 3.85
2979 3462 7.568199 TTTTAAAAAGACTCTCAAGGAGGTG 57.432 36.000 0.00 0.00 45.83 4.00
2980 3463 2.849294 AAAGACTCTCAAGGAGGTGC 57.151 50.000 0.00 0.00 45.83 5.01
2981 3464 2.022718 AAGACTCTCAAGGAGGTGCT 57.977 50.000 0.00 0.00 45.83 4.40
2982 3465 2.022718 AGACTCTCAAGGAGGTGCTT 57.977 50.000 0.00 0.00 45.83 3.91
2983 3466 1.899142 AGACTCTCAAGGAGGTGCTTC 59.101 52.381 0.00 0.00 45.83 3.86
2984 3467 1.899142 GACTCTCAAGGAGGTGCTTCT 59.101 52.381 0.00 0.00 45.83 2.85
2985 3468 3.093057 GACTCTCAAGGAGGTGCTTCTA 58.907 50.000 0.00 0.00 45.83 2.10
2986 3469 3.511477 ACTCTCAAGGAGGTGCTTCTAA 58.489 45.455 0.00 0.00 45.83 2.10
2987 3470 3.513515 ACTCTCAAGGAGGTGCTTCTAAG 59.486 47.826 0.00 0.00 45.83 2.18
2988 3471 2.834549 TCTCAAGGAGGTGCTTCTAAGG 59.165 50.000 0.00 0.00 0.00 2.69
2989 3472 2.834549 CTCAAGGAGGTGCTTCTAAGGA 59.165 50.000 0.00 0.00 0.00 3.36
2990 3473 2.567615 TCAAGGAGGTGCTTCTAAGGAC 59.432 50.000 5.86 5.86 45.39 3.85
2991 3474 2.569404 CAAGGAGGTGCTTCTAAGGACT 59.431 50.000 13.12 1.24 45.42 3.85
2992 3475 2.909217 AGGAGGTGCTTCTAAGGACTT 58.091 47.619 13.12 6.52 45.42 3.01
2993 3476 3.252351 AGGAGGTGCTTCTAAGGACTTT 58.748 45.455 13.12 3.63 45.42 2.66
2994 3477 3.653352 AGGAGGTGCTTCTAAGGACTTTT 59.347 43.478 13.12 1.47 45.42 2.27
2995 3478 4.844655 AGGAGGTGCTTCTAAGGACTTTTA 59.155 41.667 13.12 0.00 45.42 1.52
2996 3479 5.046231 AGGAGGTGCTTCTAAGGACTTTTAG 60.046 44.000 13.12 0.00 45.42 1.85
2997 3480 5.280062 GGAGGTGCTTCTAAGGACTTTTAGT 60.280 44.000 13.12 0.00 45.42 2.24
2998 3481 6.070938 GGAGGTGCTTCTAAGGACTTTTAGTA 60.071 42.308 13.12 0.00 45.42 1.82
2999 3482 7.312415 AGGTGCTTCTAAGGACTTTTAGTAA 57.688 36.000 13.12 0.00 45.42 2.24
3000 3483 7.742767 AGGTGCTTCTAAGGACTTTTAGTAAA 58.257 34.615 13.12 0.00 45.42 2.01
3001 3484 8.215736 AGGTGCTTCTAAGGACTTTTAGTAAAA 58.784 33.333 13.12 7.80 45.42 1.52
3002 3485 8.843262 GGTGCTTCTAAGGACTTTTAGTAAAAA 58.157 33.333 13.12 0.00 45.42 1.94
3028 3511 1.788229 AAAAGTCCCACCCTGTTTGG 58.212 50.000 0.00 0.00 0.00 3.28
3029 3512 0.634465 AAAGTCCCACCCTGTTTGGT 59.366 50.000 0.00 0.00 39.96 3.67
3030 3513 0.634465 AAGTCCCACCCTGTTTGGTT 59.366 50.000 0.00 0.00 36.12 3.67
3031 3514 0.634465 AGTCCCACCCTGTTTGGTTT 59.366 50.000 0.00 0.00 36.12 3.27
3032 3515 0.750249 GTCCCACCCTGTTTGGTTTG 59.250 55.000 0.00 0.00 36.12 2.93
3033 3516 1.045911 TCCCACCCTGTTTGGTTTGC 61.046 55.000 0.00 0.00 36.12 3.68
3034 3517 1.048160 CCCACCCTGTTTGGTTTGCT 61.048 55.000 0.00 0.00 36.12 3.91
3035 3518 1.698506 CCACCCTGTTTGGTTTGCTA 58.301 50.000 0.00 0.00 36.12 3.49
3036 3519 1.613437 CCACCCTGTTTGGTTTGCTAG 59.387 52.381 0.00 0.00 36.12 3.42
3037 3520 1.613437 CACCCTGTTTGGTTTGCTAGG 59.387 52.381 0.00 0.00 36.12 3.02
3038 3521 1.256812 CCCTGTTTGGTTTGCTAGGG 58.743 55.000 0.00 0.00 38.96 3.53
3039 3522 1.203001 CCCTGTTTGGTTTGCTAGGGA 60.203 52.381 0.00 0.00 46.19 4.20
3040 3523 1.886542 CCTGTTTGGTTTGCTAGGGAC 59.113 52.381 0.00 0.00 0.00 4.46
3041 3524 2.489073 CCTGTTTGGTTTGCTAGGGACT 60.489 50.000 0.00 0.00 46.37 3.85
3042 3525 3.222603 CTGTTTGGTTTGCTAGGGACTT 58.777 45.455 0.00 0.00 41.75 3.01
3043 3526 3.636764 CTGTTTGGTTTGCTAGGGACTTT 59.363 43.478 0.00 0.00 41.75 2.66
3044 3527 4.027437 TGTTTGGTTTGCTAGGGACTTTT 58.973 39.130 0.00 0.00 41.75 2.27
3045 3528 4.468153 TGTTTGGTTTGCTAGGGACTTTTT 59.532 37.500 0.00 0.00 41.75 1.94
3046 3529 4.929819 TTGGTTTGCTAGGGACTTTTTC 57.070 40.909 0.00 0.00 41.75 2.29
3047 3530 4.178956 TGGTTTGCTAGGGACTTTTTCT 57.821 40.909 0.00 0.00 41.75 2.52
3048 3531 5.313280 TGGTTTGCTAGGGACTTTTTCTA 57.687 39.130 0.00 0.00 41.75 2.10
3049 3532 5.313712 TGGTTTGCTAGGGACTTTTTCTAG 58.686 41.667 0.00 0.00 41.75 2.43
3050 3533 5.163131 TGGTTTGCTAGGGACTTTTTCTAGT 60.163 40.000 0.00 0.00 41.75 2.57
3051 3534 5.411977 GGTTTGCTAGGGACTTTTTCTAGTC 59.588 44.000 0.00 0.00 43.05 2.59
3052 3535 6.231951 GTTTGCTAGGGACTTTTTCTAGTCT 58.768 40.000 0.00 0.00 43.26 3.24
3053 3536 5.662674 TGCTAGGGACTTTTTCTAGTCTC 57.337 43.478 0.00 0.00 44.42 3.36
3059 3542 5.722263 GGGACTTTTTCTAGTCTCTACACC 58.278 45.833 0.00 0.00 41.50 4.16
3060 3543 5.245526 GGGACTTTTTCTAGTCTCTACACCA 59.754 44.000 0.00 0.00 41.50 4.17
3061 3544 6.239515 GGGACTTTTTCTAGTCTCTACACCAA 60.240 42.308 0.00 0.00 41.50 3.67
3062 3545 7.215085 GGACTTTTTCTAGTCTCTACACCAAA 58.785 38.462 0.00 0.00 43.26 3.28
3063 3546 7.713942 GGACTTTTTCTAGTCTCTACACCAAAA 59.286 37.037 0.00 0.00 43.26 2.44
3064 3547 9.106070 GACTTTTTCTAGTCTCTACACCAAAAA 57.894 33.333 0.00 0.00 41.07 1.94
3065 3548 9.110502 ACTTTTTCTAGTCTCTACACCAAAAAG 57.889 33.333 13.11 13.11 39.45 2.27
3066 3549 9.110502 CTTTTTCTAGTCTCTACACCAAAAAGT 57.889 33.333 0.00 0.00 35.03 2.66
3067 3550 8.658499 TTTTCTAGTCTCTACACCAAAAAGTC 57.342 34.615 0.00 0.00 0.00 3.01
3068 3551 6.971726 TCTAGTCTCTACACCAAAAAGTCA 57.028 37.500 0.00 0.00 0.00 3.41
3069 3552 6.746120 TCTAGTCTCTACACCAAAAAGTCAC 58.254 40.000 0.00 0.00 0.00 3.67
3070 3553 5.615925 AGTCTCTACACCAAAAAGTCACT 57.384 39.130 0.00 0.00 0.00 3.41
3071 3554 5.360591 AGTCTCTACACCAAAAAGTCACTG 58.639 41.667 0.00 0.00 0.00 3.66
3072 3555 4.511826 GTCTCTACACCAAAAAGTCACTGG 59.488 45.833 0.00 0.00 36.24 4.00
3073 3556 4.407621 TCTCTACACCAAAAAGTCACTGGA 59.592 41.667 0.00 0.00 34.16 3.86
3074 3557 5.104693 TCTCTACACCAAAAAGTCACTGGAA 60.105 40.000 0.00 0.00 34.16 3.53
3075 3558 5.502079 TCTACACCAAAAAGTCACTGGAAA 58.498 37.500 0.00 0.00 34.16 3.13
3076 3559 4.450082 ACACCAAAAAGTCACTGGAAAC 57.550 40.909 0.00 0.00 34.16 2.78
3077 3560 3.829601 ACACCAAAAAGTCACTGGAAACA 59.170 39.130 0.00 0.00 39.59 2.83
3078 3561 4.282195 ACACCAAAAAGTCACTGGAAACAA 59.718 37.500 0.00 0.00 42.06 2.83
3079 3562 5.221541 ACACCAAAAAGTCACTGGAAACAAA 60.222 36.000 0.00 0.00 42.06 2.83
3080 3563 5.120053 CACCAAAAAGTCACTGGAAACAAAC 59.880 40.000 0.00 0.00 42.06 2.93
3081 3564 5.221541 ACCAAAAAGTCACTGGAAACAAACA 60.222 36.000 0.00 0.00 42.06 2.83
3082 3565 5.120053 CCAAAAAGTCACTGGAAACAAACAC 59.880 40.000 0.00 0.00 42.06 3.32
3083 3566 4.450082 AAAGTCACTGGAAACAAACACC 57.550 40.909 0.00 0.00 42.06 4.16
3084 3567 2.375146 AGTCACTGGAAACAAACACCC 58.625 47.619 0.00 0.00 42.06 4.61
3085 3568 1.407618 GTCACTGGAAACAAACACCCC 59.592 52.381 0.00 0.00 42.06 4.95
3086 3569 0.750249 CACTGGAAACAAACACCCCC 59.250 55.000 0.00 0.00 42.06 5.40
3129 3612 1.565305 CTATTTCGCTTGCTCGCTCT 58.435 50.000 0.00 0.00 0.00 4.09
3154 3637 2.030262 GCCATGCGCTAGCTAGCT 59.970 61.111 36.02 23.12 46.85 3.32
3155 3638 1.290324 GCCATGCGCTAGCTAGCTA 59.710 57.895 36.02 26.89 46.85 3.32
3191 3674 2.494918 GCATACTGCGACCCGACT 59.505 61.111 0.00 0.00 31.71 4.18
3192 3675 1.153628 GCATACTGCGACCCGACTT 60.154 57.895 0.00 0.00 31.71 3.01
3227 3710 0.246635 CGTCGTGTCCCCATTTCTCT 59.753 55.000 0.00 0.00 0.00 3.10
3232 3715 4.583489 GTCGTGTCCCCATTTCTCTATCTA 59.417 45.833 0.00 0.00 0.00 1.98
3289 3772 1.004560 CATGGTGGTCACAGCTCGT 60.005 57.895 3.40 0.00 45.14 4.18
3304 3812 3.175240 CGTTCAGCGTGCTCCTCG 61.175 66.667 0.00 0.00 35.54 4.63
3313 3821 4.704103 TGCTCCTCGGTCCTGCCT 62.704 66.667 0.00 0.00 34.25 4.75
3553 4077 4.260609 AGCGCCGGATCCATGCAT 62.261 61.111 19.97 0.00 0.00 3.96
3635 4160 4.473520 AGCGGTGGCCATCGGAAG 62.474 66.667 37.64 12.55 41.24 3.46
3648 4173 1.139095 CGGAAGTCTACCAGCGTCC 59.861 63.158 0.00 0.00 0.00 4.79
3652 4177 1.313812 AAGTCTACCAGCGTCCGGAG 61.314 60.000 3.06 0.00 0.00 4.63
3653 4178 2.045131 GTCTACCAGCGTCCGGAGT 61.045 63.158 3.06 0.29 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.651588 CGCCTCACTTGAATAAGATATTGTATC 58.348 37.037 0.00 0.00 37.36 2.24
1 2 8.367911 TCGCCTCACTTGAATAAGATATTGTAT 58.632 33.333 0.00 0.00 37.36 2.29
2 3 7.722363 TCGCCTCACTTGAATAAGATATTGTA 58.278 34.615 0.00 0.00 37.36 2.41
3 4 6.582636 TCGCCTCACTTGAATAAGATATTGT 58.417 36.000 0.00 0.00 37.36 2.71
4 5 6.925718 TCTCGCCTCACTTGAATAAGATATTG 59.074 38.462 0.00 0.00 37.36 1.90
6 7 6.656632 TCTCGCCTCACTTGAATAAGATAT 57.343 37.500 0.00 0.00 37.36 1.63
7 8 6.465439 TTCTCGCCTCACTTGAATAAGATA 57.535 37.500 0.00 0.00 37.36 1.98
8 9 5.344743 TTCTCGCCTCACTTGAATAAGAT 57.655 39.130 0.00 0.00 37.36 2.40
126 127 3.731728 GGGCAGTGGCATGGAGGA 61.732 66.667 19.48 0.00 43.71 3.71
141 159 2.070039 TTGCTACGGGATGGAGGGG 61.070 63.158 0.00 0.00 0.00 4.79
161 179 4.148128 AGACTAGGAAACATGCTCATGG 57.852 45.455 13.69 0.00 42.91 3.66
164 182 6.544928 TGAATAGACTAGGAAACATGCTCA 57.455 37.500 0.00 0.00 0.00 4.26
166 184 9.331282 GTTAATGAATAGACTAGGAAACATGCT 57.669 33.333 0.00 0.00 0.00 3.79
167 185 8.276325 CGTTAATGAATAGACTAGGAAACATGC 58.724 37.037 0.00 0.00 0.00 4.06
306 328 6.959606 ATATATCCCTGTCCATTTAGTGCT 57.040 37.500 0.00 0.00 0.00 4.40
312 334 6.040842 GCACACAAATATATCCCTGTCCATTT 59.959 38.462 0.00 0.00 0.00 2.32
337 359 1.471684 GAAGATTCCACAAGCTGCCTG 59.528 52.381 0.00 0.00 0.00 4.85
445 471 2.941081 GCATCATCGAGCTCAGCGC 61.941 63.158 15.40 0.00 39.57 5.92
466 492 1.663702 GACGTGGACCGAACACTGG 60.664 63.158 0.00 0.00 40.70 4.00
482 517 7.168135 CCAAAGAAGTTTTTCTAAGCATGTGAC 59.832 37.037 0.00 0.00 42.80 3.67
503 781 4.320935 CGTAAATTTCCACACCCTCCAAAG 60.321 45.833 0.00 0.00 0.00 2.77
508 786 1.471287 GCCGTAAATTTCCACACCCTC 59.529 52.381 0.00 0.00 0.00 4.30
531 809 2.158900 CCGCACCACTAATTCCAGATCT 60.159 50.000 0.00 0.00 0.00 2.75
534 812 0.392461 GCCGCACCACTAATTCCAGA 60.392 55.000 0.00 0.00 0.00 3.86
551 829 0.316204 ATATAGTACCCGCACGTGCC 59.684 55.000 33.23 19.36 37.91 5.01
555 833 3.655276 AAGGAATATAGTACCCGCACG 57.345 47.619 0.00 0.00 0.00 5.34
558 836 4.745649 CTGCTAAGGAATATAGTACCCGC 58.254 47.826 0.00 0.00 0.00 6.13
559 837 4.381718 GGCTGCTAAGGAATATAGTACCCG 60.382 50.000 0.00 0.00 0.00 5.28
563 841 4.669700 TCCGGCTGCTAAGGAATATAGTA 58.330 43.478 0.00 0.00 0.00 1.82
569 847 1.147153 GCTCCGGCTGCTAAGGAAT 59.853 57.895 11.24 0.00 33.10 3.01
570 848 2.584608 GCTCCGGCTGCTAAGGAA 59.415 61.111 11.24 0.11 33.10 3.36
571 849 3.838271 CGCTCCGGCTGCTAAGGA 61.838 66.667 15.35 5.78 36.09 3.36
597 875 4.351874 AACAGCCGTATACATATTGCCT 57.648 40.909 3.32 0.00 0.00 4.75
600 878 7.386573 TCCATACAAACAGCCGTATACATATTG 59.613 37.037 3.32 2.25 0.00 1.90
606 884 4.056050 CCTCCATACAAACAGCCGTATAC 58.944 47.826 0.00 0.00 0.00 1.47
656 1026 9.901172 AAATAAAGTTTACACATACCCTAGAGG 57.099 33.333 0.00 0.00 43.78 3.69
660 1030 8.741841 GCCAAAATAAAGTTTACACATACCCTA 58.258 33.333 0.00 0.00 0.00 3.53
661 1031 7.233757 TGCCAAAATAAAGTTTACACATACCCT 59.766 33.333 0.00 0.00 0.00 4.34
662 1032 7.379750 TGCCAAAATAAAGTTTACACATACCC 58.620 34.615 0.00 0.00 0.00 3.69
666 1036 6.868339 GCTCTGCCAAAATAAAGTTTACACAT 59.132 34.615 0.00 0.00 0.00 3.21
667 1037 6.183360 TGCTCTGCCAAAATAAAGTTTACACA 60.183 34.615 0.00 0.00 0.00 3.72
690 1060 7.934120 ACATAGTAGAAAATATCTCAACCCTGC 59.066 37.037 0.00 0.00 39.71 4.85
711 1111 6.893759 ACTCTCTCGATCGATAACAACATAG 58.106 40.000 19.78 2.67 0.00 2.23
712 1112 6.862711 ACTCTCTCGATCGATAACAACATA 57.137 37.500 19.78 0.00 0.00 2.29
718 1119 3.953766 TGCAACTCTCTCGATCGATAAC 58.046 45.455 19.78 3.46 0.00 1.89
795 1211 8.548877 ACCAACATAGTAAACATCAGGTTAGAT 58.451 33.333 0.00 0.00 39.29 1.98
796 1212 7.913789 ACCAACATAGTAAACATCAGGTTAGA 58.086 34.615 0.00 0.00 39.29 2.10
797 1213 9.314321 CTACCAACATAGTAAACATCAGGTTAG 57.686 37.037 0.00 0.00 39.29 2.34
798 1214 8.818860 ACTACCAACATAGTAAACATCAGGTTA 58.181 33.333 0.00 0.00 39.29 2.85
799 1215 7.686434 ACTACCAACATAGTAAACATCAGGTT 58.314 34.615 0.00 0.00 42.98 3.50
800 1216 7.253905 ACTACCAACATAGTAAACATCAGGT 57.746 36.000 0.00 0.00 33.50 4.00
801 1217 8.561738 AAACTACCAACATAGTAAACATCAGG 57.438 34.615 0.00 0.00 34.18 3.86
828 1244 8.900983 AGAATAAATAAAAGCTGGCACAAAAA 57.099 26.923 0.00 0.00 38.70 1.94
829 1245 8.900983 AAGAATAAATAAAAGCTGGCACAAAA 57.099 26.923 0.00 0.00 38.70 2.44
830 1246 8.772705 CAAAGAATAAATAAAAGCTGGCACAAA 58.227 29.630 0.00 0.00 38.70 2.83
831 1247 7.930865 ACAAAGAATAAATAAAAGCTGGCACAA 59.069 29.630 0.00 0.00 38.70 3.33
832 1248 7.441017 ACAAAGAATAAATAAAAGCTGGCACA 58.559 30.769 0.00 0.00 0.00 4.57
833 1249 7.889589 ACAAAGAATAAATAAAAGCTGGCAC 57.110 32.000 0.00 0.00 0.00 5.01
834 1250 7.095271 GCAACAAAGAATAAATAAAAGCTGGCA 60.095 33.333 0.00 0.00 0.00 4.92
835 1251 7.118245 AGCAACAAAGAATAAATAAAAGCTGGC 59.882 33.333 0.00 0.00 0.00 4.85
836 1252 8.437742 CAGCAACAAAGAATAAATAAAAGCTGG 58.562 33.333 0.00 0.00 39.44 4.85
837 1253 8.981647 ACAGCAACAAAGAATAAATAAAAGCTG 58.018 29.630 0.00 0.00 46.09 4.24
838 1254 8.981647 CACAGCAACAAAGAATAAATAAAAGCT 58.018 29.630 0.00 0.00 0.00 3.74
839 1255 8.764287 ACACAGCAACAAAGAATAAATAAAAGC 58.236 29.630 0.00 0.00 0.00 3.51
848 1264 9.853555 CCATAAATAACACAGCAACAAAGAATA 57.146 29.630 0.00 0.00 0.00 1.75
849 1265 7.331687 GCCATAAATAACACAGCAACAAAGAAT 59.668 33.333 0.00 0.00 0.00 2.40
850 1266 6.644592 GCCATAAATAACACAGCAACAAAGAA 59.355 34.615 0.00 0.00 0.00 2.52
851 1267 6.155827 GCCATAAATAACACAGCAACAAAGA 58.844 36.000 0.00 0.00 0.00 2.52
852 1268 5.925397 TGCCATAAATAACACAGCAACAAAG 59.075 36.000 0.00 0.00 0.00 2.77
853 1269 5.847304 TGCCATAAATAACACAGCAACAAA 58.153 33.333 0.00 0.00 0.00 2.83
854 1270 5.459536 TGCCATAAATAACACAGCAACAA 57.540 34.783 0.00 0.00 0.00 2.83
855 1271 5.058149 CTGCCATAAATAACACAGCAACA 57.942 39.130 0.00 0.00 0.00 3.33
860 1276 6.258160 GTGTAAGCTGCCATAAATAACACAG 58.742 40.000 0.00 0.00 35.83 3.66
861 1277 5.163804 CGTGTAAGCTGCCATAAATAACACA 60.164 40.000 0.00 0.00 35.58 3.72
862 1278 5.163794 ACGTGTAAGCTGCCATAAATAACAC 60.164 40.000 0.00 0.00 33.20 3.32
863 1279 4.938832 ACGTGTAAGCTGCCATAAATAACA 59.061 37.500 0.00 0.00 0.00 2.41
864 1280 5.064198 TCACGTGTAAGCTGCCATAAATAAC 59.936 40.000 16.51 0.00 0.00 1.89
865 1281 5.064198 GTCACGTGTAAGCTGCCATAAATAA 59.936 40.000 16.51 0.00 0.00 1.40
866 1282 4.569162 GTCACGTGTAAGCTGCCATAAATA 59.431 41.667 16.51 0.00 0.00 1.40
867 1283 3.374058 GTCACGTGTAAGCTGCCATAAAT 59.626 43.478 16.51 0.00 0.00 1.40
868 1284 2.739913 GTCACGTGTAAGCTGCCATAAA 59.260 45.455 16.51 0.00 0.00 1.40
869 1285 2.289133 TGTCACGTGTAAGCTGCCATAA 60.289 45.455 16.51 0.00 0.00 1.90
870 1286 1.273886 TGTCACGTGTAAGCTGCCATA 59.726 47.619 16.51 0.00 0.00 2.74
871 1287 0.034756 TGTCACGTGTAAGCTGCCAT 59.965 50.000 16.51 0.00 0.00 4.40
872 1288 0.034756 ATGTCACGTGTAAGCTGCCA 59.965 50.000 16.51 1.50 0.00 4.92
873 1289 0.721718 GATGTCACGTGTAAGCTGCC 59.278 55.000 16.51 0.00 0.00 4.85
874 1290 0.721718 GGATGTCACGTGTAAGCTGC 59.278 55.000 16.51 0.00 0.00 5.25
875 1291 2.370281 AGGATGTCACGTGTAAGCTG 57.630 50.000 16.51 0.00 0.00 4.24
876 1292 4.530710 TTAAGGATGTCACGTGTAAGCT 57.469 40.909 16.51 0.00 0.00 3.74
877 1293 5.600908 TTTTAAGGATGTCACGTGTAAGC 57.399 39.130 16.51 7.67 0.00 3.09
905 1321 9.645059 CTTCAGTTTGTCTAATTCACATCTAGA 57.355 33.333 0.00 0.00 0.00 2.43
906 1322 9.429359 ACTTCAGTTTGTCTAATTCACATCTAG 57.571 33.333 0.00 0.00 0.00 2.43
907 1323 9.424319 GACTTCAGTTTGTCTAATTCACATCTA 57.576 33.333 0.00 0.00 0.00 1.98
908 1324 8.153550 AGACTTCAGTTTGTCTAATTCACATCT 58.846 33.333 0.00 0.00 41.19 2.90
909 1325 8.316640 AGACTTCAGTTTGTCTAATTCACATC 57.683 34.615 0.00 0.00 41.19 3.06
910 1326 9.950496 ATAGACTTCAGTTTGTCTAATTCACAT 57.050 29.630 6.89 0.00 45.27 3.21
924 1340 9.516546 TCGACCACATATATATAGACTTCAGTT 57.483 33.333 0.00 0.00 0.00 3.16
925 1341 9.516546 TTCGACCACATATATATAGACTTCAGT 57.483 33.333 0.00 0.00 0.00 3.41
935 1351 9.958180 TCCAAATCATTTCGACCACATATATAT 57.042 29.630 0.00 0.00 0.00 0.86
936 1352 9.785982 TTCCAAATCATTTCGACCACATATATA 57.214 29.630 0.00 0.00 0.00 0.86
937 1353 8.690203 TTCCAAATCATTTCGACCACATATAT 57.310 30.769 0.00 0.00 0.00 0.86
953 1369 4.204799 CATGCCTGAGAGATTCCAAATCA 58.795 43.478 2.79 0.00 0.00 2.57
954 1370 3.004524 GCATGCCTGAGAGATTCCAAATC 59.995 47.826 6.36 0.00 0.00 2.17
955 1371 2.957006 GCATGCCTGAGAGATTCCAAAT 59.043 45.455 6.36 0.00 0.00 2.32
956 1372 2.372264 GCATGCCTGAGAGATTCCAAA 58.628 47.619 6.36 0.00 0.00 3.28
988 1404 4.513442 GTGTCCTCCATTTGTATGTGCTA 58.487 43.478 0.00 0.00 0.00 3.49
1015 1431 0.998145 ACGGAGTAGTACTGGGAGGT 59.002 55.000 7.76 0.00 41.94 3.85
1043 1459 2.438614 CGAGGACGAGAGCCCAGA 60.439 66.667 0.00 0.00 42.66 3.86
1078 1494 5.009610 TGTTTGCCTTCTTTCTCCATGTAAC 59.990 40.000 0.00 0.00 0.00 2.50
1254 1673 3.355816 GTCTGGTGACGACAACACA 57.644 52.632 0.27 0.00 38.94 3.72
1609 2037 1.881973 GTCAAGCTCATGCAGGAACAA 59.118 47.619 1.37 0.00 42.74 2.83
1884 2312 2.601240 TGGATGGGATGCTCACAAAA 57.399 45.000 0.00 0.00 31.08 2.44
1922 2350 9.429359 GCAATATATACAGTCTGAAATGTAGCT 57.571 33.333 6.91 0.00 35.49 3.32
1923 2351 9.208022 TGCAATATATACAGTCTGAAATGTAGC 57.792 33.333 6.91 2.60 35.49 3.58
1925 2353 9.191995 CGTGCAATATATACAGTCTGAAATGTA 57.808 33.333 6.91 6.48 36.40 2.29
1926 2354 7.171508 CCGTGCAATATATACAGTCTGAAATGT 59.828 37.037 6.91 1.11 0.00 2.71
1927 2355 7.384932 TCCGTGCAATATATACAGTCTGAAATG 59.615 37.037 6.91 0.00 0.00 2.32
1928 2356 7.441836 TCCGTGCAATATATACAGTCTGAAAT 58.558 34.615 6.91 2.43 0.00 2.17
1929 2357 6.811954 TCCGTGCAATATATACAGTCTGAAA 58.188 36.000 6.91 0.00 0.00 2.69
1930 2358 6.399639 TCCGTGCAATATATACAGTCTGAA 57.600 37.500 6.91 0.00 0.00 3.02
1931 2359 6.434340 AGATCCGTGCAATATATACAGTCTGA 59.566 38.462 6.91 0.00 0.00 3.27
1932 2360 6.625362 AGATCCGTGCAATATATACAGTCTG 58.375 40.000 0.00 0.00 0.00 3.51
1933 2361 6.661377 AGAGATCCGTGCAATATATACAGTCT 59.339 38.462 0.00 0.00 0.00 3.24
1934 2362 6.749578 CAGAGATCCGTGCAATATATACAGTC 59.250 42.308 0.00 0.00 0.00 3.51
1935 2363 6.625362 CAGAGATCCGTGCAATATATACAGT 58.375 40.000 0.00 0.00 0.00 3.55
1936 2364 5.518128 GCAGAGATCCGTGCAATATATACAG 59.482 44.000 11.18 0.00 39.62 2.74
1937 2365 5.410924 GCAGAGATCCGTGCAATATATACA 58.589 41.667 11.18 0.00 39.62 2.29
1938 2366 4.806247 GGCAGAGATCCGTGCAATATATAC 59.194 45.833 16.50 0.00 41.75 1.47
1939 2367 4.440112 CGGCAGAGATCCGTGCAATATATA 60.440 45.833 16.50 0.00 41.75 0.86
1940 2368 3.677148 CGGCAGAGATCCGTGCAATATAT 60.677 47.826 16.50 0.00 41.75 0.86
1941 2369 2.352715 CGGCAGAGATCCGTGCAATATA 60.353 50.000 16.50 0.00 41.75 0.86
1942 2370 1.606480 CGGCAGAGATCCGTGCAATAT 60.606 52.381 16.50 0.00 41.75 1.28
1943 2371 0.249447 CGGCAGAGATCCGTGCAATA 60.249 55.000 16.50 0.00 41.75 1.90
1944 2372 1.522355 CGGCAGAGATCCGTGCAAT 60.522 57.895 16.50 0.00 41.75 3.56
1945 2373 2.125552 CGGCAGAGATCCGTGCAA 60.126 61.111 16.50 0.00 41.75 4.08
2006 2434 1.437573 CGGCGCTGAAGATGTCCTA 59.562 57.895 11.90 0.00 0.00 2.94
2044 2472 0.179100 CCATCGCCCACTCTAGTGTG 60.179 60.000 16.35 16.35 44.21 3.82
2072 2500 0.674895 ATCGCTGCTGGGTTCTTCAC 60.675 55.000 7.52 0.00 0.00 3.18
2236 2664 1.303561 GCATGGTTCCTGGCACTCA 60.304 57.895 0.00 0.00 0.00 3.41
2290 2718 1.139058 GCCCAGGTATTGACGATCACT 59.861 52.381 0.00 0.00 0.00 3.41
2483 2911 4.303257 GCTAGCAAGCGGGAGTTT 57.697 55.556 10.63 0.00 39.39 2.66
2544 2972 1.080093 GTCATGTCGAACTCGGCCA 60.080 57.895 2.24 0.00 44.42 5.36
2662 3090 4.634184 AGGCTTAGTACATGTACACTCG 57.366 45.455 32.02 19.65 38.48 4.18
2682 3114 6.500049 ACCAATCTCCCATCTATTCCTTCTAG 59.500 42.308 0.00 0.00 0.00 2.43
2837 3270 4.912133 AGGATTTAGTTATACTGGTCCCCC 59.088 45.833 0.00 0.00 29.94 5.40
2885 3367 3.403038 CATAATCCCGTTTAGGCCTCAG 58.597 50.000 9.68 0.00 39.21 3.35
2905 3388 4.879545 GGACTAGAGAAACAAACAACACCA 59.120 41.667 0.00 0.00 0.00 4.17
2906 3389 5.123936 AGGACTAGAGAAACAAACAACACC 58.876 41.667 0.00 0.00 0.00 4.16
2907 3390 6.424207 CCTAGGACTAGAGAAACAAACAACAC 59.576 42.308 1.05 0.00 35.21 3.32
2908 3391 6.325545 TCCTAGGACTAGAGAAACAAACAACA 59.674 38.462 7.62 0.00 35.21 3.33
2909 3392 6.645827 GTCCTAGGACTAGAGAAACAAACAAC 59.354 42.308 31.12 1.86 41.57 3.32
2910 3393 6.756221 GTCCTAGGACTAGAGAAACAAACAA 58.244 40.000 31.12 0.00 41.57 2.83
2911 3394 6.342338 GTCCTAGGACTAGAGAAACAAACA 57.658 41.667 31.12 0.00 41.57 2.83
2925 3408 6.399743 CAGGAACTAGAAAAAGTCCTAGGAC 58.600 44.000 31.29 31.29 40.90 3.85
2926 3409 5.484290 CCAGGAACTAGAAAAAGTCCTAGGA 59.516 44.000 7.62 7.62 36.02 2.94
2927 3410 5.338463 CCCAGGAACTAGAAAAAGTCCTAGG 60.338 48.000 0.82 0.82 36.02 3.02
2928 3411 5.484290 TCCCAGGAACTAGAAAAAGTCCTAG 59.516 44.000 0.00 0.00 36.02 3.02
2929 3412 5.247792 GTCCCAGGAACTAGAAAAAGTCCTA 59.752 44.000 0.00 0.00 36.02 2.94
2930 3413 4.041815 GTCCCAGGAACTAGAAAAAGTCCT 59.958 45.833 0.00 0.00 36.02 3.85
2931 3414 4.041815 AGTCCCAGGAACTAGAAAAAGTCC 59.958 45.833 0.00 0.00 36.02 3.85
2932 3415 5.230323 AGTCCCAGGAACTAGAAAAAGTC 57.770 43.478 0.00 0.00 36.02 3.01
2933 3416 5.648330 AAGTCCCAGGAACTAGAAAAAGT 57.352 39.130 0.00 0.00 36.02 2.66
2934 3417 6.961360 AAAAGTCCCAGGAACTAGAAAAAG 57.039 37.500 0.00 0.00 36.02 2.27
2935 3418 8.826293 TTAAAAAGTCCCAGGAACTAGAAAAA 57.174 30.769 0.00 0.00 36.02 1.94
2936 3419 8.826293 TTTAAAAAGTCCCAGGAACTAGAAAA 57.174 30.769 0.00 0.00 36.02 2.29
2937 3420 8.826293 TTTTAAAAAGTCCCAGGAACTAGAAA 57.174 30.769 0.00 0.00 36.02 2.52
2938 3421 8.826293 TTTTTAAAAAGTCCCAGGAACTAGAA 57.174 30.769 9.31 0.00 36.02 2.10
2939 3422 8.276477 TCTTTTTAAAAAGTCCCAGGAACTAGA 58.724 33.333 30.32 11.37 44.37 2.43
2940 3423 8.350722 GTCTTTTTAAAAAGTCCCAGGAACTAG 58.649 37.037 30.32 9.53 44.37 2.57
2941 3424 8.057011 AGTCTTTTTAAAAAGTCCCAGGAACTA 58.943 33.333 30.32 11.69 44.37 2.24
2942 3425 6.895756 AGTCTTTTTAAAAAGTCCCAGGAACT 59.104 34.615 30.32 22.73 44.37 3.01
2943 3426 7.068348 AGAGTCTTTTTAAAAAGTCCCAGGAAC 59.932 37.037 30.32 21.35 44.37 3.62
2944 3427 7.123383 AGAGTCTTTTTAAAAAGTCCCAGGAA 58.877 34.615 30.32 13.28 44.37 3.36
2945 3428 6.669631 AGAGTCTTTTTAAAAAGTCCCAGGA 58.330 36.000 30.32 14.05 44.37 3.86
2946 3429 6.546034 TGAGAGTCTTTTTAAAAAGTCCCAGG 59.454 38.462 30.32 12.28 44.37 4.45
2947 3430 7.568199 TGAGAGTCTTTTTAAAAAGTCCCAG 57.432 36.000 30.32 12.93 44.37 4.45
2948 3431 7.068226 CCTTGAGAGTCTTTTTAAAAAGTCCCA 59.932 37.037 30.32 19.93 44.37 4.37
2949 3432 7.284716 TCCTTGAGAGTCTTTTTAAAAAGTCCC 59.715 37.037 30.32 20.51 44.37 4.46
2950 3433 8.221965 TCCTTGAGAGTCTTTTTAAAAAGTCC 57.778 34.615 30.32 23.54 44.37 3.85
2951 3434 8.346300 CCTCCTTGAGAGTCTTTTTAAAAAGTC 58.654 37.037 30.32 26.37 41.52 3.01
2952 3435 7.834681 ACCTCCTTGAGAGTCTTTTTAAAAAGT 59.165 33.333 30.32 18.29 41.52 2.66
2953 3436 8.131731 CACCTCCTTGAGAGTCTTTTTAAAAAG 58.868 37.037 27.60 27.60 41.81 2.27
2954 3437 7.416326 GCACCTCCTTGAGAGTCTTTTTAAAAA 60.416 37.037 12.62 12.62 41.47 1.94
2955 3438 6.039382 GCACCTCCTTGAGAGTCTTTTTAAAA 59.961 38.462 0.00 0.00 41.47 1.52
2956 3439 5.531287 GCACCTCCTTGAGAGTCTTTTTAAA 59.469 40.000 0.00 0.00 41.47 1.52
2957 3440 5.063880 GCACCTCCTTGAGAGTCTTTTTAA 58.936 41.667 0.00 0.00 41.47 1.52
2958 3441 4.348168 AGCACCTCCTTGAGAGTCTTTTTA 59.652 41.667 0.00 0.00 41.47 1.52
2959 3442 3.137360 AGCACCTCCTTGAGAGTCTTTTT 59.863 43.478 0.00 0.00 41.47 1.94
2960 3443 2.708325 AGCACCTCCTTGAGAGTCTTTT 59.292 45.455 0.00 0.00 41.47 2.27
2961 3444 2.334023 AGCACCTCCTTGAGAGTCTTT 58.666 47.619 0.00 0.00 41.47 2.52
2962 3445 2.022718 AGCACCTCCTTGAGAGTCTT 57.977 50.000 0.00 0.00 41.47 3.01
2963 3446 1.899142 GAAGCACCTCCTTGAGAGTCT 59.101 52.381 0.00 0.00 41.47 3.24
2964 3447 1.899142 AGAAGCACCTCCTTGAGAGTC 59.101 52.381 0.00 0.00 41.47 3.36
2965 3448 2.022718 AGAAGCACCTCCTTGAGAGT 57.977 50.000 0.00 0.00 41.47 3.24
2966 3449 3.118811 CCTTAGAAGCACCTCCTTGAGAG 60.119 52.174 0.00 0.00 42.83 3.20
2967 3450 2.834549 CCTTAGAAGCACCTCCTTGAGA 59.165 50.000 0.00 0.00 0.00 3.27
2968 3451 2.834549 TCCTTAGAAGCACCTCCTTGAG 59.165 50.000 0.00 0.00 0.00 3.02
2969 3452 2.567615 GTCCTTAGAAGCACCTCCTTGA 59.432 50.000 0.00 0.00 0.00 3.02
2970 3453 2.569404 AGTCCTTAGAAGCACCTCCTTG 59.431 50.000 0.00 0.00 0.00 3.61
2971 3454 2.909217 AGTCCTTAGAAGCACCTCCTT 58.091 47.619 0.00 0.00 0.00 3.36
2972 3455 2.632763 AGTCCTTAGAAGCACCTCCT 57.367 50.000 0.00 0.00 0.00 3.69
2973 3456 3.704800 AAAGTCCTTAGAAGCACCTCC 57.295 47.619 0.00 0.00 0.00 4.30
2974 3457 5.795972 ACTAAAAGTCCTTAGAAGCACCTC 58.204 41.667 0.00 0.00 33.78 3.85
2975 3458 5.827326 ACTAAAAGTCCTTAGAAGCACCT 57.173 39.130 0.00 0.00 33.78 4.00
2976 3459 7.974482 TTTACTAAAAGTCCTTAGAAGCACC 57.026 36.000 0.00 0.00 33.78 5.01
2977 3460 9.880064 CTTTTTACTAAAAGTCCTTAGAAGCAC 57.120 33.333 0.00 0.00 43.34 4.40
3008 3491 2.115427 CCAAACAGGGTGGGACTTTTT 58.885 47.619 0.00 0.00 32.03 1.94
3009 3492 1.007842 ACCAAACAGGGTGGGACTTTT 59.992 47.619 0.00 0.00 43.89 2.27
3010 3493 0.634465 ACCAAACAGGGTGGGACTTT 59.366 50.000 0.00 0.00 43.89 2.66
3011 3494 0.634465 AACCAAACAGGGTGGGACTT 59.366 50.000 0.00 0.00 41.32 3.01
3012 3495 0.634465 AAACCAAACAGGGTGGGACT 59.366 50.000 0.00 0.00 41.32 3.85
3013 3496 0.750249 CAAACCAAACAGGGTGGGAC 59.250 55.000 0.00 0.00 41.32 4.46
3014 3497 1.045911 GCAAACCAAACAGGGTGGGA 61.046 55.000 0.00 0.00 41.32 4.37
3015 3498 1.048160 AGCAAACCAAACAGGGTGGG 61.048 55.000 0.00 0.00 41.32 4.61
3016 3499 1.613437 CTAGCAAACCAAACAGGGTGG 59.387 52.381 0.00 0.00 41.32 4.61
3017 3500 1.613437 CCTAGCAAACCAAACAGGGTG 59.387 52.381 0.00 0.00 41.32 4.61
3018 3501 1.480498 CCCTAGCAAACCAAACAGGGT 60.480 52.381 0.00 0.00 45.04 4.34
3019 3502 1.203001 TCCCTAGCAAACCAAACAGGG 60.203 52.381 0.00 0.00 43.52 4.45
3020 3503 1.886542 GTCCCTAGCAAACCAAACAGG 59.113 52.381 0.00 0.00 45.67 4.00
3021 3504 2.863809 AGTCCCTAGCAAACCAAACAG 58.136 47.619 0.00 0.00 0.00 3.16
3022 3505 3.306472 AAGTCCCTAGCAAACCAAACA 57.694 42.857 0.00 0.00 0.00 2.83
3023 3506 4.665833 AAAAGTCCCTAGCAAACCAAAC 57.334 40.909 0.00 0.00 0.00 2.93
3024 3507 4.959839 AGAAAAAGTCCCTAGCAAACCAAA 59.040 37.500 0.00 0.00 0.00 3.28
3025 3508 4.542697 AGAAAAAGTCCCTAGCAAACCAA 58.457 39.130 0.00 0.00 0.00 3.67
3026 3509 4.178956 AGAAAAAGTCCCTAGCAAACCA 57.821 40.909 0.00 0.00 0.00 3.67
3027 3510 5.314529 ACTAGAAAAAGTCCCTAGCAAACC 58.685 41.667 0.00 0.00 34.70 3.27
3028 3511 6.231951 AGACTAGAAAAAGTCCCTAGCAAAC 58.768 40.000 0.00 0.00 45.86 2.93
3029 3512 6.270231 AGAGACTAGAAAAAGTCCCTAGCAAA 59.730 38.462 0.00 0.00 45.86 3.68
3030 3513 5.780793 AGAGACTAGAAAAAGTCCCTAGCAA 59.219 40.000 0.00 0.00 45.86 3.91
3031 3514 5.334421 AGAGACTAGAAAAAGTCCCTAGCA 58.666 41.667 0.00 0.00 45.86 3.49
3032 3515 5.925506 AGAGACTAGAAAAAGTCCCTAGC 57.074 43.478 0.00 0.00 45.86 3.42
3033 3516 7.148035 GGTGTAGAGACTAGAAAAAGTCCCTAG 60.148 44.444 0.00 0.00 45.86 3.02
3034 3517 6.662663 GGTGTAGAGACTAGAAAAAGTCCCTA 59.337 42.308 0.00 0.00 45.86 3.53
3035 3518 5.481122 GGTGTAGAGACTAGAAAAAGTCCCT 59.519 44.000 0.00 0.00 45.86 4.20
3036 3519 5.245526 TGGTGTAGAGACTAGAAAAAGTCCC 59.754 44.000 0.00 0.00 45.86 4.46
3037 3520 6.342338 TGGTGTAGAGACTAGAAAAAGTCC 57.658 41.667 0.00 0.00 45.86 3.85
3038 3521 8.658499 TTTTGGTGTAGAGACTAGAAAAAGTC 57.342 34.615 0.00 0.00 45.20 3.01
3039 3522 9.110502 CTTTTTGGTGTAGAGACTAGAAAAAGT 57.889 33.333 0.00 0.00 34.28 2.66
3040 3523 9.110502 ACTTTTTGGTGTAGAGACTAGAAAAAG 57.889 33.333 0.00 0.00 38.59 2.27
3041 3524 9.106070 GACTTTTTGGTGTAGAGACTAGAAAAA 57.894 33.333 0.00 0.00 0.00 1.94
3042 3525 8.262227 TGACTTTTTGGTGTAGAGACTAGAAAA 58.738 33.333 0.00 0.00 0.00 2.29
3043 3526 7.709613 GTGACTTTTTGGTGTAGAGACTAGAAA 59.290 37.037 0.00 0.00 0.00 2.52
3044 3527 7.069578 AGTGACTTTTTGGTGTAGAGACTAGAA 59.930 37.037 0.00 0.00 0.00 2.10
3045 3528 6.550108 AGTGACTTTTTGGTGTAGAGACTAGA 59.450 38.462 0.00 0.00 0.00 2.43
3046 3529 6.642950 CAGTGACTTTTTGGTGTAGAGACTAG 59.357 42.308 0.00 0.00 0.00 2.57
3047 3530 6.462487 CCAGTGACTTTTTGGTGTAGAGACTA 60.462 42.308 0.00 0.00 0.00 2.59
3048 3531 5.360591 CAGTGACTTTTTGGTGTAGAGACT 58.639 41.667 0.00 0.00 0.00 3.24
3049 3532 4.511826 CCAGTGACTTTTTGGTGTAGAGAC 59.488 45.833 0.00 0.00 0.00 3.36
3050 3533 4.407621 TCCAGTGACTTTTTGGTGTAGAGA 59.592 41.667 0.00 0.00 33.65 3.10
3051 3534 4.703897 TCCAGTGACTTTTTGGTGTAGAG 58.296 43.478 0.00 0.00 33.65 2.43
3052 3535 4.764050 TCCAGTGACTTTTTGGTGTAGA 57.236 40.909 0.00 0.00 33.65 2.59
3053 3536 5.124776 TGTTTCCAGTGACTTTTTGGTGTAG 59.875 40.000 0.00 0.00 33.65 2.74
3054 3537 5.010933 TGTTTCCAGTGACTTTTTGGTGTA 58.989 37.500 0.00 0.00 33.65 2.90
3055 3538 3.829601 TGTTTCCAGTGACTTTTTGGTGT 59.170 39.130 0.00 0.00 33.65 4.16
3056 3539 4.448537 TGTTTCCAGTGACTTTTTGGTG 57.551 40.909 0.00 0.00 33.65 4.17
3057 3540 5.221541 TGTTTGTTTCCAGTGACTTTTTGGT 60.222 36.000 0.00 0.00 33.65 3.67
3058 3541 5.120053 GTGTTTGTTTCCAGTGACTTTTTGG 59.880 40.000 0.00 0.00 0.00 3.28
3059 3542 5.120053 GGTGTTTGTTTCCAGTGACTTTTTG 59.880 40.000 0.00 0.00 0.00 2.44
3060 3543 5.234752 GGTGTTTGTTTCCAGTGACTTTTT 58.765 37.500 0.00 0.00 0.00 1.94
3061 3544 4.322424 GGGTGTTTGTTTCCAGTGACTTTT 60.322 41.667 0.00 0.00 0.00 2.27
3062 3545 3.194755 GGGTGTTTGTTTCCAGTGACTTT 59.805 43.478 0.00 0.00 0.00 2.66
3063 3546 2.758423 GGGTGTTTGTTTCCAGTGACTT 59.242 45.455 0.00 0.00 0.00 3.01
3064 3547 2.375146 GGGTGTTTGTTTCCAGTGACT 58.625 47.619 0.00 0.00 0.00 3.41
3065 3548 1.407618 GGGGTGTTTGTTTCCAGTGAC 59.592 52.381 0.00 0.00 0.00 3.67
3066 3549 1.686741 GGGGGTGTTTGTTTCCAGTGA 60.687 52.381 0.00 0.00 0.00 3.41
3067 3550 0.750249 GGGGGTGTTTGTTTCCAGTG 59.250 55.000 0.00 0.00 0.00 3.66
3068 3551 0.634465 AGGGGGTGTTTGTTTCCAGT 59.366 50.000 0.00 0.00 0.00 4.00
3069 3552 1.039856 CAGGGGGTGTTTGTTTCCAG 58.960 55.000 0.00 0.00 0.00 3.86
3070 3553 0.336737 ACAGGGGGTGTTTGTTTCCA 59.663 50.000 0.00 0.00 34.94 3.53
3071 3554 0.750249 CACAGGGGGTGTTTGTTTCC 59.250 55.000 0.00 0.00 42.75 3.13
3081 3564 3.261962 TCTTGGTTAATACACAGGGGGT 58.738 45.455 0.00 0.00 0.00 4.95
3082 3565 4.207165 CATCTTGGTTAATACACAGGGGG 58.793 47.826 0.00 0.00 0.00 5.40
3083 3566 3.632145 GCATCTTGGTTAATACACAGGGG 59.368 47.826 0.00 0.00 0.00 4.79
3084 3567 3.632145 GGCATCTTGGTTAATACACAGGG 59.368 47.826 0.00 0.00 0.00 4.45
3085 3568 4.269183 TGGCATCTTGGTTAATACACAGG 58.731 43.478 0.00 0.00 0.00 4.00
3086 3569 4.201950 GCTGGCATCTTGGTTAATACACAG 60.202 45.833 0.00 0.00 0.00 3.66
3094 3577 3.951563 AATAGGCTGGCATCTTGGTTA 57.048 42.857 3.38 0.00 0.00 2.85
3096 3579 2.659428 GAAATAGGCTGGCATCTTGGT 58.341 47.619 3.38 0.00 0.00 3.67
3151 3634 2.747855 GCGGCAGCAAGGTTAGCT 60.748 61.111 3.18 0.00 44.62 3.32
3152 3635 4.166011 CGCGGCAGCAAGGTTAGC 62.166 66.667 10.08 0.00 45.49 3.09
3153 3636 2.742372 ACGCGGCAGCAAGGTTAG 60.742 61.111 12.47 0.00 45.49 2.34
3154 3637 3.047280 CACGCGGCAGCAAGGTTA 61.047 61.111 12.47 0.00 45.49 2.85
3191 3674 1.080093 CGCCAAGGTAGACGAGCAA 60.080 57.895 0.00 0.00 0.00 3.91
3192 3675 2.209064 GACGCCAAGGTAGACGAGCA 62.209 60.000 0.00 0.00 0.00 4.26
3227 3710 1.394266 GGGGTTGGGCGACGTAGATA 61.394 60.000 0.00 0.00 0.00 1.98
3232 3715 4.404098 GATGGGGTTGGGCGACGT 62.404 66.667 0.00 0.00 0.00 4.34
3279 3762 1.661509 CACGCTGAACGAGCTGTGA 60.662 57.895 0.00 0.00 46.38 3.58
3289 3772 3.282745 GACCGAGGAGCACGCTGAA 62.283 63.158 0.00 0.00 0.00 3.02
3296 3804 4.704103 AGGCAGGACCGAGGAGCA 62.704 66.667 0.00 0.00 46.52 4.26
3341 3857 0.319211 CGGAGACTTGCCGTGTACAA 60.319 55.000 0.00 0.00 43.66 2.41
3382 3898 1.314730 ACGGTGGTGATGAAACAACC 58.685 50.000 0.00 0.00 40.34 3.77
3553 4077 2.042979 CCTGAATCCTTTTCCTTCCCCA 59.957 50.000 0.00 0.00 0.00 4.96
3629 4154 1.310933 GGACGCTGGTAGACTTCCGA 61.311 60.000 0.00 0.00 0.00 4.55
3635 4160 2.045131 ACTCCGGACGCTGGTAGAC 61.045 63.158 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.