Multiple sequence alignment - TraesCS7B01G451400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G451400 chr7B 100.000 2264 0 0 1 2264 713215691 713217954 0.000000e+00 4181.0
1 TraesCS7B01G451400 chr7B 97.872 47 1 0 1842 1888 713217485 713217531 5.180000e-12 82.4
2 TraesCS7B01G451400 chr7B 97.872 47 1 0 1795 1841 713217532 713217578 5.180000e-12 82.4
3 TraesCS7B01G451400 chr7A 90.451 1152 58 15 139 1276 712360068 712361181 0.000000e+00 1471.0
4 TraesCS7B01G451400 chr7A 96.187 577 17 3 1271 1844 712361471 712362045 0.000000e+00 939.0
5 TraesCS7B01G451400 chr7A 92.419 277 16 2 1993 2264 17451738 17451462 7.580000e-105 390.0
6 TraesCS7B01G451400 chr7D 93.302 642 37 3 640 1276 618714582 618715222 0.000000e+00 942.0
7 TraesCS7B01G451400 chr7D 87.297 370 28 8 232 600 618714227 618714578 2.710000e-109 405.0
8 TraesCS7B01G451400 chr7D 95.536 224 6 2 1271 1491 618715520 618715742 2.770000e-94 355.0
9 TraesCS7B01G451400 chr7D 87.654 243 30 0 1019 1261 618378348 618378106 1.320000e-72 283.0
10 TraesCS7B01G451400 chr7D 80.000 275 43 6 999 1273 618333530 618333268 2.290000e-45 193.0
11 TraesCS7B01G451400 chr7D 95.192 104 5 0 1889 1992 618718355 618718458 5.000000e-37 165.0
12 TraesCS7B01G451400 chr7D 92.105 76 1 5 7 80 460516399 460516471 3.980000e-18 102.0
13 TraesCS7B01G451400 chr7D 94.030 67 2 1 1 67 47223797 47223733 1.430000e-17 100.0
14 TraesCS7B01G451400 chr5B 94.946 277 12 2 1989 2264 688133593 688133868 1.240000e-117 433.0
15 TraesCS7B01G451400 chr5B 94.624 279 9 3 1992 2264 255145109 255144831 5.780000e-116 427.0
16 TraesCS7B01G451400 chr5B 92.143 280 17 2 1989 2264 531615281 531615559 7.580000e-105 390.0
17 TraesCS7B01G451400 chr2B 93.548 279 10 5 1993 2264 166816113 166815836 2.090000e-110 409.0
18 TraesCS7B01G451400 chr2B 93.066 274 15 4 1992 2264 672743381 672743111 4.530000e-107 398.0
19 TraesCS7B01G451400 chr1B 93.548 279 11 5 1991 2264 101239481 101239757 2.090000e-110 409.0
20 TraesCS7B01G451400 chr3D 92.780 277 16 1 1992 2264 552563687 552563963 4.530000e-107 398.0
21 TraesCS7B01G451400 chr2D 92.419 277 17 3 1992 2264 575676754 575677030 2.110000e-105 392.0
22 TraesCS7B01G451400 chr2D 89.286 84 2 4 7 84 552068410 552068328 5.150000e-17 99.0
23 TraesCS7B01G451400 chr6D 95.455 66 2 1 9 74 3744195 3744259 1.110000e-18 104.0
24 TraesCS7B01G451400 chr1D 90.789 76 4 2 1 75 7689497 7689570 5.150000e-17 99.0
25 TraesCS7B01G451400 chr3B 95.082 61 1 1 7 67 377115175 377115117 6.660000e-16 95.3
26 TraesCS7B01G451400 chr3A 93.846 65 1 2 7 71 319962367 319962306 6.660000e-16 95.3
27 TraesCS7B01G451400 chr5D 92.537 67 2 2 7 73 452549927 452549864 2.390000e-15 93.5
28 TraesCS7B01G451400 chr4D 90.141 71 6 1 1 71 313032329 313032398 8.610000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G451400 chr7B 713215691 713217954 2263 False 1448.60 4181 98.581333 1 2264 3 chr7B.!!$F1 2263
1 TraesCS7B01G451400 chr7A 712360068 712362045 1977 False 1205.00 1471 93.319000 139 1844 2 chr7A.!!$F1 1705
2 TraesCS7B01G451400 chr7D 618714227 618718458 4231 False 466.75 942 92.831750 232 1992 4 chr7D.!!$F2 1760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 352 0.032615 TCTCTTCCTGGCTCCTCCTC 60.033 60.0 0.0 0.0 35.26 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 5067 0.102481 TTTAGACATCGGCTCGGCTC 59.898 55.0 0.0 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.717842 CGAAAAGGTGGTGGGAAGA 57.282 52.632 0.00 0.00 0.00 2.87
19 20 1.975660 CGAAAAGGTGGTGGGAAGAA 58.024 50.000 0.00 0.00 0.00 2.52
20 21 2.303175 CGAAAAGGTGGTGGGAAGAAA 58.697 47.619 0.00 0.00 0.00 2.52
21 22 2.691011 CGAAAAGGTGGTGGGAAGAAAA 59.309 45.455 0.00 0.00 0.00 2.29
22 23 3.243401 CGAAAAGGTGGTGGGAAGAAAAG 60.243 47.826 0.00 0.00 0.00 2.27
23 24 3.398318 AAAGGTGGTGGGAAGAAAAGT 57.602 42.857 0.00 0.00 0.00 2.66
24 25 2.364972 AGGTGGTGGGAAGAAAAGTG 57.635 50.000 0.00 0.00 0.00 3.16
25 26 1.850345 AGGTGGTGGGAAGAAAAGTGA 59.150 47.619 0.00 0.00 0.00 3.41
26 27 2.243736 AGGTGGTGGGAAGAAAAGTGAA 59.756 45.455 0.00 0.00 0.00 3.18
27 28 3.028130 GGTGGTGGGAAGAAAAGTGAAA 58.972 45.455 0.00 0.00 0.00 2.69
28 29 3.641436 GGTGGTGGGAAGAAAAGTGAAAT 59.359 43.478 0.00 0.00 0.00 2.17
29 30 4.501400 GGTGGTGGGAAGAAAAGTGAAATG 60.501 45.833 0.00 0.00 0.00 2.32
30 31 3.640967 TGGTGGGAAGAAAAGTGAAATGG 59.359 43.478 0.00 0.00 0.00 3.16
31 32 3.006859 GGTGGGAAGAAAAGTGAAATGGG 59.993 47.826 0.00 0.00 0.00 4.00
32 33 3.895041 GTGGGAAGAAAAGTGAAATGGGA 59.105 43.478 0.00 0.00 0.00 4.37
33 34 4.343814 GTGGGAAGAAAAGTGAAATGGGAA 59.656 41.667 0.00 0.00 0.00 3.97
34 35 4.343814 TGGGAAGAAAAGTGAAATGGGAAC 59.656 41.667 0.00 0.00 0.00 3.62
102 103 7.629027 AAAGATAAAGAAAAGCTTTCTTGCG 57.371 32.000 13.10 0.00 43.17 4.85
103 104 6.319141 AGATAAAGAAAAGCTTTCTTGCGT 57.681 33.333 13.10 7.41 43.17 5.24
104 105 6.739112 AGATAAAGAAAAGCTTTCTTGCGTT 58.261 32.000 13.10 9.34 43.17 4.84
105 106 7.203218 AGATAAAGAAAAGCTTTCTTGCGTTT 58.797 30.769 13.10 8.46 43.17 3.60
112 113 6.812481 AAAGCTTTCTTGCGTTTCTTAAAG 57.188 33.333 5.69 0.00 38.13 1.85
113 114 4.860072 AGCTTTCTTGCGTTTCTTAAAGG 58.140 39.130 0.00 0.00 38.13 3.11
114 115 3.981416 GCTTTCTTGCGTTTCTTAAAGGG 59.019 43.478 0.00 0.00 0.00 3.95
115 116 4.499188 GCTTTCTTGCGTTTCTTAAAGGGT 60.499 41.667 0.00 0.00 0.00 4.34
116 117 5.585820 TTTCTTGCGTTTCTTAAAGGGTT 57.414 34.783 0.00 0.00 0.00 4.11
117 118 4.823790 TCTTGCGTTTCTTAAAGGGTTC 57.176 40.909 0.00 0.00 0.00 3.62
118 119 4.457466 TCTTGCGTTTCTTAAAGGGTTCT 58.543 39.130 0.00 0.00 0.00 3.01
119 120 4.885325 TCTTGCGTTTCTTAAAGGGTTCTT 59.115 37.500 0.00 0.00 34.07 2.52
120 121 4.561735 TGCGTTTCTTAAAGGGTTCTTG 57.438 40.909 0.00 0.00 32.75 3.02
121 122 3.316868 TGCGTTTCTTAAAGGGTTCTTGG 59.683 43.478 0.00 0.00 32.75 3.61
122 123 3.317149 GCGTTTCTTAAAGGGTTCTTGGT 59.683 43.478 0.00 0.00 32.75 3.67
123 124 4.202080 GCGTTTCTTAAAGGGTTCTTGGTT 60.202 41.667 0.00 0.00 32.75 3.67
124 125 5.680408 GCGTTTCTTAAAGGGTTCTTGGTTT 60.680 40.000 0.00 0.00 32.75 3.27
125 126 6.334989 CGTTTCTTAAAGGGTTCTTGGTTTT 58.665 36.000 0.00 0.00 32.75 2.43
126 127 6.254804 CGTTTCTTAAAGGGTTCTTGGTTTTG 59.745 38.462 0.00 0.00 32.75 2.44
127 128 6.860790 TTCTTAAAGGGTTCTTGGTTTTGT 57.139 33.333 0.00 0.00 32.75 2.83
128 129 6.860790 TCTTAAAGGGTTCTTGGTTTTGTT 57.139 33.333 0.00 0.00 32.75 2.83
129 130 6.869695 TCTTAAAGGGTTCTTGGTTTTGTTC 58.130 36.000 0.00 0.00 32.75 3.18
130 131 6.666113 TCTTAAAGGGTTCTTGGTTTTGTTCT 59.334 34.615 0.00 0.00 32.75 3.01
131 132 5.755409 AAAGGGTTCTTGGTTTTGTTCTT 57.245 34.783 0.00 0.00 32.75 2.52
132 133 5.339008 AAGGGTTCTTGGTTTTGTTCTTC 57.661 39.130 0.00 0.00 0.00 2.87
133 134 3.380320 AGGGTTCTTGGTTTTGTTCTTCG 59.620 43.478 0.00 0.00 0.00 3.79
134 135 3.129813 GGGTTCTTGGTTTTGTTCTTCGT 59.870 43.478 0.00 0.00 0.00 3.85
135 136 4.102649 GGTTCTTGGTTTTGTTCTTCGTG 58.897 43.478 0.00 0.00 0.00 4.35
136 137 4.102649 GTTCTTGGTTTTGTTCTTCGTGG 58.897 43.478 0.00 0.00 0.00 4.94
137 138 3.349022 TCTTGGTTTTGTTCTTCGTGGT 58.651 40.909 0.00 0.00 0.00 4.16
172 173 2.175035 TTTCCGGCCCACTAGTTCCG 62.175 60.000 16.81 16.81 41.41 4.30
203 204 1.757423 GCCAGCCTCTCATCTCCTCC 61.757 65.000 0.00 0.00 0.00 4.30
204 205 0.105555 CCAGCCTCTCATCTCCTCCT 60.106 60.000 0.00 0.00 0.00 3.69
341 342 3.161067 TCTCAGTCAACCTCTCTTCCTG 58.839 50.000 0.00 0.00 0.00 3.86
351 352 0.032615 TCTCTTCCTGGCTCCTCCTC 60.033 60.000 0.00 0.00 35.26 3.71
361 362 1.075600 CTCCTCCTCCTCCACCTCC 60.076 68.421 0.00 0.00 0.00 4.30
362 363 1.862138 TCCTCCTCCTCCACCTCCA 60.862 63.158 0.00 0.00 0.00 3.86
363 364 1.687493 CCTCCTCCTCCACCTCCAC 60.687 68.421 0.00 0.00 0.00 4.02
364 365 1.687493 CTCCTCCTCCACCTCCACC 60.687 68.421 0.00 0.00 0.00 4.61
365 366 2.689034 CCTCCTCCACCTCCACCC 60.689 72.222 0.00 0.00 0.00 4.61
366 367 2.689034 CTCCTCCACCTCCACCCC 60.689 72.222 0.00 0.00 0.00 4.95
367 368 4.348495 TCCTCCACCTCCACCCCC 62.348 72.222 0.00 0.00 0.00 5.40
424 425 1.410882 GGTAGGCAGGATCTGTCTGAC 59.589 57.143 11.76 0.00 46.55 3.51
425 426 2.103373 GTAGGCAGGATCTGTCTGACA 58.897 52.381 10.50 10.50 46.55 3.58
469 470 7.147958 TGGATCCATGTATAAATTGGTCTGA 57.852 36.000 11.44 0.00 0.00 3.27
476 477 7.933577 CCATGTATAAATTGGTCTGAAGAGCTA 59.066 37.037 10.60 3.81 42.60 3.32
510 511 5.405935 AATCATAGACTGCGGCATATGTA 57.594 39.130 17.13 7.55 0.00 2.29
511 512 4.864704 TCATAGACTGCGGCATATGTAA 57.135 40.909 17.13 2.18 0.00 2.41
579 580 4.892934 TGTAGAAAGGATTTGGTTGCAGTT 59.107 37.500 0.00 0.00 39.27 3.16
627 634 4.444056 GGTACAAATGTGCAATGTCAACAC 59.556 41.667 4.09 0.00 32.02 3.32
650 657 4.290722 CCTAGCCAGATTCTAATCCCCATT 59.709 45.833 0.00 0.00 36.04 3.16
654 661 5.006386 GCCAGATTCTAATCCCCATTAGTG 58.994 45.833 0.00 0.00 41.66 2.74
658 665 7.453393 CAGATTCTAATCCCCATTAGTGCTTA 58.547 38.462 0.00 0.00 41.66 3.09
689 696 7.121759 ACTCCAGTATTTGTTTCATCCTCAATG 59.878 37.037 0.00 0.00 36.65 2.82
706 713 0.032678 ATGCTCCCTAGATTGCGTCG 59.967 55.000 0.00 0.00 0.00 5.12
728 735 3.100862 GAAGGCAGCGCAACGATCC 62.101 63.158 11.47 0.45 0.00 3.36
733 740 1.153765 CAGCGCAACGATCCTCTGA 60.154 57.895 11.47 0.00 0.00 3.27
763 770 7.976734 AGAGTCCATTATTAGTTTCAGAACTCG 59.023 37.037 0.00 0.00 44.75 4.18
857 869 5.639506 CGGTGAACAGTTTACAGATCATTCT 59.360 40.000 10.19 0.00 0.00 2.40
928 940 1.494824 ACGCCGTACAACTGAAACTC 58.505 50.000 0.00 0.00 0.00 3.01
955 967 2.224450 CCGGTGTCAACCTTTCCTTACT 60.224 50.000 0.00 0.00 45.17 2.24
1006 1021 2.434336 CCCTGGACGTTGGAGATGAATA 59.566 50.000 0.00 0.00 0.00 1.75
1007 1022 3.493350 CCCTGGACGTTGGAGATGAATAG 60.493 52.174 0.00 0.00 0.00 1.73
1026 1041 1.068472 AGTGCGACAAGTCTAGAACCG 60.068 52.381 0.00 0.00 0.00 4.44
1062 1077 0.252513 TGGTTCTCGGAGGGGAATCA 60.253 55.000 4.96 0.00 31.29 2.57
1170 1185 0.673437 CCAAGCACAACGTCCCAAAT 59.327 50.000 0.00 0.00 0.00 2.32
1379 1700 2.132686 ACACACTTTCTTGGTACCCCT 58.867 47.619 10.07 0.00 0.00 4.79
1409 1730 0.106819 GAGAACATGCTGATGCCCCT 60.107 55.000 0.00 0.00 38.71 4.79
1448 1769 5.123227 TCTTTGACACGAAAAGGTCAGAAT 58.877 37.500 0.00 0.00 44.12 2.40
1493 1817 3.244735 TGTGTAGGAAATTGCTGCTGGTA 60.245 43.478 4.20 0.00 0.00 3.25
1502 1826 1.165907 TGCTGCTGGTACTTGTGCAC 61.166 55.000 10.75 10.75 0.00 4.57
1525 1849 2.349817 CGGTGCTCAATGTTGTTGTCTC 60.350 50.000 0.00 0.00 0.00 3.36
1534 1858 7.201670 GCTCAATGTTGTTGTCTCATATGATGA 60.202 37.037 5.72 3.48 37.76 2.92
1546 1870 4.170449 TCATATGATGATAGGTGCAGGGT 58.830 43.478 0.00 0.00 33.59 4.34
1565 1889 4.409247 AGGGTAATTCGCTCCTTTCTGTAT 59.591 41.667 0.00 0.00 34.08 2.29
1604 1928 6.127814 TGTGATGATTTGCTTTGAGGAGAATC 60.128 38.462 0.00 0.00 0.00 2.52
1646 1970 7.915397 GCACAAGAGTTCTTAATTTTCTGTTGA 59.085 33.333 0.00 0.00 34.82 3.18
1672 1996 3.016031 CCATGTTATGTGCAGTAAGGCA 58.984 45.455 0.00 0.00 42.53 4.75
1816 2143 3.119673 TCAAAGTGTTGAAAAGCTTCGCA 60.120 39.130 0.00 0.00 40.87 5.10
1844 2171 4.584874 TGTCAGTTTTGTTCCTCACTCAA 58.415 39.130 0.00 0.00 0.00 3.02
1845 2172 5.007034 TGTCAGTTTTGTTCCTCACTCAAA 58.993 37.500 0.00 0.00 0.00 2.69
1846 2173 5.475220 TGTCAGTTTTGTTCCTCACTCAAAA 59.525 36.000 0.00 0.00 38.27 2.44
1847 2174 6.152661 TGTCAGTTTTGTTCCTCACTCAAAAT 59.847 34.615 0.00 0.00 41.07 1.82
1849 2176 6.152661 TCAGTTTTGTTCCTCACTCAAAATGT 59.847 34.615 0.00 0.00 41.07 2.71
1850 2177 6.813152 CAGTTTTGTTCCTCACTCAAAATGTT 59.187 34.615 0.00 0.00 41.07 2.71
1851 2178 6.813152 AGTTTTGTTCCTCACTCAAAATGTTG 59.187 34.615 0.00 0.00 41.07 3.33
1852 2179 6.522625 TTTGTTCCTCACTCAAAATGTTGA 57.477 33.333 0.00 0.00 41.57 3.18
1853 2180 6.522625 TTGTTCCTCACTCAAAATGTTGAA 57.477 33.333 0.00 0.00 43.18 2.69
1854 2181 6.522625 TGTTCCTCACTCAAAATGTTGAAA 57.477 33.333 0.00 0.00 43.18 2.69
1855 2182 6.929625 TGTTCCTCACTCAAAATGTTGAAAA 58.070 32.000 0.00 0.00 43.18 2.29
1856 2183 7.035004 TGTTCCTCACTCAAAATGTTGAAAAG 58.965 34.615 0.00 0.00 43.18 2.27
1860 2735 6.199719 CCTCACTCAAAATGTTGAAAAGCTTC 59.800 38.462 0.00 0.00 43.18 3.86
1862 2737 4.504097 ACTCAAAATGTTGAAAAGCTTCGC 59.496 37.500 0.00 0.00 43.18 4.70
1869 2744 0.250467 TGAAAAGCTTCGCAGGCTCT 60.250 50.000 0.00 0.00 39.30 4.09
1872 2747 0.952984 AAAGCTTCGCAGGCTCTGTC 60.953 55.000 0.00 0.00 39.30 3.51
1873 2748 2.047844 GCTTCGCAGGCTCTGTCA 60.048 61.111 4.45 0.00 33.43 3.58
1875 2750 1.291588 CTTCGCAGGCTCTGTCAGT 59.708 57.895 0.00 0.00 33.43 3.41
1876 2751 0.320247 CTTCGCAGGCTCTGTCAGTT 60.320 55.000 0.00 0.00 33.43 3.16
1879 2754 0.236711 CGCAGGCTCTGTCAGTTTTG 59.763 55.000 0.00 0.00 33.43 2.44
1883 2758 2.291741 CAGGCTCTGTCAGTTTTGTTCC 59.708 50.000 0.00 0.00 0.00 3.62
1944 4770 1.569479 GGTGCTGAAAGAGGCGACAC 61.569 60.000 0.00 0.00 34.07 3.67
1996 4822 3.138798 GCCATGGCCTGTCTGCTG 61.139 66.667 27.24 0.00 34.56 4.41
1997 4823 2.439701 CCATGGCCTGTCTGCTGG 60.440 66.667 3.32 0.00 36.86 4.85
1998 4824 2.672908 CATGGCCTGTCTGCTGGA 59.327 61.111 3.32 0.00 35.96 3.86
1999 4825 1.001764 CATGGCCTGTCTGCTGGAA 60.002 57.895 3.32 0.00 35.96 3.53
2000 4826 0.395311 CATGGCCTGTCTGCTGGAAT 60.395 55.000 3.32 0.00 35.96 3.01
2001 4827 0.333993 ATGGCCTGTCTGCTGGAATT 59.666 50.000 3.32 0.00 35.96 2.17
2002 4828 0.112995 TGGCCTGTCTGCTGGAATTT 59.887 50.000 3.32 0.00 35.96 1.82
2003 4829 1.354031 TGGCCTGTCTGCTGGAATTTA 59.646 47.619 3.32 0.00 35.96 1.40
2004 4830 2.019984 GGCCTGTCTGCTGGAATTTAG 58.980 52.381 0.00 0.00 35.96 1.85
2005 4831 2.619074 GGCCTGTCTGCTGGAATTTAGT 60.619 50.000 0.00 0.00 35.96 2.24
2006 4832 3.084786 GCCTGTCTGCTGGAATTTAGTT 58.915 45.455 0.00 0.00 35.96 2.24
2007 4833 3.507622 GCCTGTCTGCTGGAATTTAGTTT 59.492 43.478 0.00 0.00 35.96 2.66
2008 4834 4.700213 GCCTGTCTGCTGGAATTTAGTTTA 59.300 41.667 0.00 0.00 35.96 2.01
2009 4835 5.358160 GCCTGTCTGCTGGAATTTAGTTTAT 59.642 40.000 0.00 0.00 35.96 1.40
2010 4836 6.127619 GCCTGTCTGCTGGAATTTAGTTTATT 60.128 38.462 0.00 0.00 35.96 1.40
2011 4837 7.577616 GCCTGTCTGCTGGAATTTAGTTTATTT 60.578 37.037 0.00 0.00 35.96 1.40
2012 4838 8.306761 CCTGTCTGCTGGAATTTAGTTTATTTT 58.693 33.333 0.00 0.00 35.96 1.82
2013 4839 9.132521 CTGTCTGCTGGAATTTAGTTTATTTTG 57.867 33.333 0.00 0.00 0.00 2.44
2014 4840 8.087750 TGTCTGCTGGAATTTAGTTTATTTTGG 58.912 33.333 0.00 0.00 0.00 3.28
2015 4841 7.545615 GTCTGCTGGAATTTAGTTTATTTTGGG 59.454 37.037 0.00 0.00 0.00 4.12
2016 4842 7.453126 TCTGCTGGAATTTAGTTTATTTTGGGA 59.547 33.333 0.00 0.00 0.00 4.37
2017 4843 7.382898 TGCTGGAATTTAGTTTATTTTGGGAC 58.617 34.615 0.00 0.00 0.00 4.46
2018 4844 7.015682 TGCTGGAATTTAGTTTATTTTGGGACA 59.984 33.333 0.00 0.00 0.00 4.02
2019 4845 7.545615 GCTGGAATTTAGTTTATTTTGGGACAG 59.454 37.037 0.00 0.00 42.39 3.51
2020 4846 7.382898 TGGAATTTAGTTTATTTTGGGACAGC 58.617 34.615 0.00 0.00 42.39 4.40
2021 4847 6.816640 GGAATTTAGTTTATTTTGGGACAGCC 59.183 38.462 0.00 0.00 42.39 4.85
2036 4862 5.757850 GGACAGCCCAATAACTATTTCAG 57.242 43.478 0.00 0.00 34.14 3.02
2037 4863 5.437060 GGACAGCCCAATAACTATTTCAGA 58.563 41.667 0.00 0.00 34.14 3.27
2038 4864 5.885912 GGACAGCCCAATAACTATTTCAGAA 59.114 40.000 0.00 0.00 34.14 3.02
2039 4865 6.377146 GGACAGCCCAATAACTATTTCAGAAA 59.623 38.462 0.00 0.00 34.14 2.52
2040 4866 7.068716 GGACAGCCCAATAACTATTTCAGAAAT 59.931 37.037 13.06 13.06 34.14 2.17
2041 4867 8.366359 ACAGCCCAATAACTATTTCAGAAATT 57.634 30.769 13.71 0.00 32.38 1.82
2042 4868 8.470002 ACAGCCCAATAACTATTTCAGAAATTC 58.530 33.333 13.71 0.00 32.38 2.17
2043 4869 7.922811 CAGCCCAATAACTATTTCAGAAATTCC 59.077 37.037 13.71 0.00 32.38 3.01
2044 4870 7.841222 AGCCCAATAACTATTTCAGAAATTCCT 59.159 33.333 13.71 1.87 32.38 3.36
2045 4871 9.131791 GCCCAATAACTATTTCAGAAATTCCTA 57.868 33.333 13.71 3.88 32.38 2.94
2061 4887 9.800572 AGAAATTCCTAAATAAATCCTAGAGGC 57.199 33.333 0.00 0.00 34.44 4.70
2062 4888 8.941995 AAATTCCTAAATAAATCCTAGAGGCC 57.058 34.615 0.00 0.00 34.44 5.19
2063 4889 6.449830 TTCCTAAATAAATCCTAGAGGCCC 57.550 41.667 0.00 0.00 34.44 5.80
2064 4890 5.482580 TCCTAAATAAATCCTAGAGGCCCA 58.517 41.667 0.00 0.00 34.44 5.36
2065 4891 5.309806 TCCTAAATAAATCCTAGAGGCCCAC 59.690 44.000 0.00 0.00 34.44 4.61
2066 4892 5.310857 CCTAAATAAATCCTAGAGGCCCACT 59.689 44.000 0.00 1.43 34.44 4.00
2067 4893 5.734031 AAATAAATCCTAGAGGCCCACTT 57.266 39.130 0.00 0.00 34.44 3.16
2068 4894 6.841781 AAATAAATCCTAGAGGCCCACTTA 57.158 37.500 0.00 0.00 34.44 2.24
2069 4895 6.841781 AATAAATCCTAGAGGCCCACTTAA 57.158 37.500 0.00 0.00 34.44 1.85
2070 4896 4.505324 AAATCCTAGAGGCCCACTTAAC 57.495 45.455 0.00 0.00 34.44 2.01
2071 4897 1.875488 TCCTAGAGGCCCACTTAACC 58.125 55.000 0.00 0.00 34.44 2.85
2072 4898 0.837940 CCTAGAGGCCCACTTAACCC 59.162 60.000 0.00 0.00 0.00 4.11
2073 4899 1.580059 CTAGAGGCCCACTTAACCCA 58.420 55.000 0.00 0.00 0.00 4.51
2074 4900 2.127708 CTAGAGGCCCACTTAACCCAT 58.872 52.381 0.00 0.00 0.00 4.00
2075 4901 1.382914 AGAGGCCCACTTAACCCATT 58.617 50.000 0.00 0.00 0.00 3.16
2076 4902 1.716503 AGAGGCCCACTTAACCCATTT 59.283 47.619 0.00 0.00 0.00 2.32
2077 4903 1.824852 GAGGCCCACTTAACCCATTTG 59.175 52.381 0.00 0.00 0.00 2.32
2078 4904 1.149077 AGGCCCACTTAACCCATTTGT 59.851 47.619 0.00 0.00 0.00 2.83
2079 4905 1.275010 GGCCCACTTAACCCATTTGTG 59.725 52.381 0.00 0.00 0.00 3.33
2080 4906 1.337728 GCCCACTTAACCCATTTGTGC 60.338 52.381 0.00 0.00 0.00 4.57
2081 4907 1.967066 CCCACTTAACCCATTTGTGCA 59.033 47.619 0.00 0.00 0.00 4.57
2082 4908 2.366916 CCCACTTAACCCATTTGTGCAA 59.633 45.455 0.00 0.00 0.00 4.08
2083 4909 3.554752 CCCACTTAACCCATTTGTGCAAG 60.555 47.826 0.00 0.00 0.00 4.01
2084 4910 3.554752 CCACTTAACCCATTTGTGCAAGG 60.555 47.826 0.00 0.00 0.00 3.61
2085 4911 2.037121 ACTTAACCCATTTGTGCAAGGC 59.963 45.455 0.00 0.00 0.00 4.35
2086 4912 1.709578 TAACCCATTTGTGCAAGGCA 58.290 45.000 0.00 0.00 35.60 4.75
2087 4913 0.835941 AACCCATTTGTGCAAGGCAA 59.164 45.000 0.00 0.00 41.47 4.52
2088 4914 0.393820 ACCCATTTGTGCAAGGCAAG 59.606 50.000 0.00 0.00 41.47 4.01
2089 4915 0.320946 CCCATTTGTGCAAGGCAAGG 60.321 55.000 0.00 0.00 41.47 3.61
2090 4916 0.320946 CCATTTGTGCAAGGCAAGGG 60.321 55.000 0.00 0.00 41.47 3.95
2091 4917 0.680618 CATTTGTGCAAGGCAAGGGA 59.319 50.000 0.00 0.00 41.47 4.20
2092 4918 1.276989 CATTTGTGCAAGGCAAGGGAT 59.723 47.619 0.00 0.00 41.47 3.85
2093 4919 2.300956 TTTGTGCAAGGCAAGGGATA 57.699 45.000 0.00 0.00 41.47 2.59
2094 4920 1.838112 TTGTGCAAGGCAAGGGATAG 58.162 50.000 0.00 0.00 41.47 2.08
2095 4921 0.698238 TGTGCAAGGCAAGGGATAGT 59.302 50.000 0.00 0.00 41.47 2.12
2096 4922 1.912731 TGTGCAAGGCAAGGGATAGTA 59.087 47.619 0.00 0.00 41.47 1.82
2097 4923 2.509548 TGTGCAAGGCAAGGGATAGTAT 59.490 45.455 0.00 0.00 41.47 2.12
2098 4924 3.053693 TGTGCAAGGCAAGGGATAGTATT 60.054 43.478 0.00 0.00 41.47 1.89
2099 4925 4.165180 TGTGCAAGGCAAGGGATAGTATTA 59.835 41.667 0.00 0.00 41.47 0.98
2100 4926 5.130350 GTGCAAGGCAAGGGATAGTATTAA 58.870 41.667 0.00 0.00 41.47 1.40
2101 4927 5.770162 GTGCAAGGCAAGGGATAGTATTAAT 59.230 40.000 0.00 0.00 41.47 1.40
2102 4928 5.769662 TGCAAGGCAAGGGATAGTATTAATG 59.230 40.000 0.00 0.00 34.76 1.90
2103 4929 5.770162 GCAAGGCAAGGGATAGTATTAATGT 59.230 40.000 0.00 0.00 0.00 2.71
2104 4930 6.265422 GCAAGGCAAGGGATAGTATTAATGTT 59.735 38.462 0.00 0.00 0.00 2.71
2105 4931 7.201911 GCAAGGCAAGGGATAGTATTAATGTTT 60.202 37.037 0.00 0.00 0.00 2.83
2106 4932 9.349713 CAAGGCAAGGGATAGTATTAATGTTTA 57.650 33.333 0.00 0.00 0.00 2.01
2107 4933 9.574516 AAGGCAAGGGATAGTATTAATGTTTAG 57.425 33.333 0.00 0.00 0.00 1.85
2108 4934 8.724310 AGGCAAGGGATAGTATTAATGTTTAGT 58.276 33.333 0.00 0.00 0.00 2.24
2119 4945 9.681062 AGTATTAATGTTTAGTACCACATTGCT 57.319 29.630 19.04 11.80 42.38 3.91
2122 4948 9.681062 ATTAATGTTTAGTACCACATTGCTAGT 57.319 29.630 19.04 2.43 42.38 2.57
2123 4949 7.996098 AATGTTTAGTACCACATTGCTAGTT 57.004 32.000 12.58 0.00 41.18 2.24
2124 4950 6.795098 TGTTTAGTACCACATTGCTAGTTG 57.205 37.500 0.00 0.00 0.00 3.16
2125 4951 6.526526 TGTTTAGTACCACATTGCTAGTTGA 58.473 36.000 0.00 0.00 0.00 3.18
2126 4952 6.649141 TGTTTAGTACCACATTGCTAGTTGAG 59.351 38.462 0.00 0.00 0.00 3.02
2127 4953 4.891992 AGTACCACATTGCTAGTTGAGT 57.108 40.909 0.00 0.00 0.00 3.41
2128 4954 4.569943 AGTACCACATTGCTAGTTGAGTG 58.430 43.478 0.00 0.00 0.00 3.51
2130 4956 2.086869 CCACATTGCTAGTTGAGTGGG 58.913 52.381 14.75 0.00 42.04 4.61
2131 4957 2.290260 CCACATTGCTAGTTGAGTGGGA 60.290 50.000 14.75 0.00 42.04 4.37
2132 4958 3.005554 CACATTGCTAGTTGAGTGGGAG 58.994 50.000 0.00 0.00 0.00 4.30
2133 4959 2.639839 ACATTGCTAGTTGAGTGGGAGT 59.360 45.455 0.00 0.00 0.00 3.85
2134 4960 3.073062 ACATTGCTAGTTGAGTGGGAGTT 59.927 43.478 0.00 0.00 0.00 3.01
2135 4961 2.839486 TGCTAGTTGAGTGGGAGTTG 57.161 50.000 0.00 0.00 0.00 3.16
2136 4962 1.347707 TGCTAGTTGAGTGGGAGTTGG 59.652 52.381 0.00 0.00 0.00 3.77
2137 4963 1.623811 GCTAGTTGAGTGGGAGTTGGA 59.376 52.381 0.00 0.00 0.00 3.53
2138 4964 2.613223 GCTAGTTGAGTGGGAGTTGGAC 60.613 54.545 0.00 0.00 0.00 4.02
2139 4965 0.765510 AGTTGAGTGGGAGTTGGACC 59.234 55.000 0.00 0.00 0.00 4.46
2140 4966 0.765510 GTTGAGTGGGAGTTGGACCT 59.234 55.000 0.00 0.00 0.00 3.85
2141 4967 1.056660 TTGAGTGGGAGTTGGACCTC 58.943 55.000 0.00 0.00 0.00 3.85
2150 4976 4.691326 GGAGTTGGACCTCCTTATAAGG 57.309 50.000 23.54 23.54 46.34 2.69
2151 4977 3.391626 GGAGTTGGACCTCCTTATAAGGG 59.608 52.174 27.65 18.78 46.34 3.95
2152 4978 4.296056 GAGTTGGACCTCCTTATAAGGGA 58.704 47.826 27.65 15.21 46.47 4.20
2153 4979 4.299485 AGTTGGACCTCCTTATAAGGGAG 58.701 47.826 27.65 21.83 46.47 4.30
2161 4987 5.222079 CTCCTTATAAGGGAGGCTCTTTC 57.778 47.826 27.65 4.80 46.47 2.62
2162 4988 3.974642 TCCTTATAAGGGAGGCTCTTTCC 59.025 47.826 27.65 7.34 46.47 3.13
2167 4993 3.827752 GGAGGCTCTTTCCCCACT 58.172 61.111 15.23 0.00 0.00 4.00
2168 4994 2.079326 GGAGGCTCTTTCCCCACTT 58.921 57.895 15.23 0.00 0.00 3.16
2169 4995 0.322906 GGAGGCTCTTTCCCCACTTG 60.323 60.000 15.23 0.00 0.00 3.16
2170 4996 0.402121 GAGGCTCTTTCCCCACTTGT 59.598 55.000 7.40 0.00 0.00 3.16
2171 4997 1.628846 GAGGCTCTTTCCCCACTTGTA 59.371 52.381 7.40 0.00 0.00 2.41
2172 4998 2.239907 GAGGCTCTTTCCCCACTTGTAT 59.760 50.000 7.40 0.00 0.00 2.29
2173 4999 2.025887 AGGCTCTTTCCCCACTTGTATG 60.026 50.000 0.00 0.00 0.00 2.39
2174 5000 2.026262 GGCTCTTTCCCCACTTGTATGA 60.026 50.000 0.00 0.00 0.00 2.15
2175 5001 3.274288 GCTCTTTCCCCACTTGTATGAG 58.726 50.000 0.00 0.00 0.00 2.90
2176 5002 3.274288 CTCTTTCCCCACTTGTATGAGC 58.726 50.000 0.00 0.00 0.00 4.26
2177 5003 2.642311 TCTTTCCCCACTTGTATGAGCA 59.358 45.455 0.00 0.00 0.00 4.26
2178 5004 3.266772 TCTTTCCCCACTTGTATGAGCAT 59.733 43.478 0.00 0.00 0.00 3.79
2179 5005 2.715749 TCCCCACTTGTATGAGCATG 57.284 50.000 0.00 0.00 0.00 4.06
2180 5006 2.195727 TCCCCACTTGTATGAGCATGA 58.804 47.619 0.00 0.00 0.00 3.07
2181 5007 2.171237 TCCCCACTTGTATGAGCATGAG 59.829 50.000 0.00 0.00 0.00 2.90
2182 5008 2.171237 CCCCACTTGTATGAGCATGAGA 59.829 50.000 0.00 0.00 0.00 3.27
2183 5009 3.370846 CCCCACTTGTATGAGCATGAGAA 60.371 47.826 0.00 0.00 0.00 2.87
2184 5010 3.624861 CCCACTTGTATGAGCATGAGAAC 59.375 47.826 0.00 0.00 0.00 3.01
2185 5011 4.256110 CCACTTGTATGAGCATGAGAACA 58.744 43.478 0.00 0.00 0.00 3.18
2186 5012 4.696877 CCACTTGTATGAGCATGAGAACAA 59.303 41.667 0.00 0.00 0.00 2.83
2187 5013 5.163784 CCACTTGTATGAGCATGAGAACAAG 60.164 44.000 16.47 16.47 45.76 3.16
2188 5014 5.640783 CACTTGTATGAGCATGAGAACAAGA 59.359 40.000 21.53 0.00 44.03 3.02
2189 5015 5.873712 ACTTGTATGAGCATGAGAACAAGAG 59.126 40.000 21.53 6.24 44.03 2.85
2190 5016 4.763073 TGTATGAGCATGAGAACAAGAGG 58.237 43.478 0.00 0.00 0.00 3.69
2191 5017 2.775911 TGAGCATGAGAACAAGAGGG 57.224 50.000 0.00 0.00 0.00 4.30
2192 5018 2.259917 TGAGCATGAGAACAAGAGGGA 58.740 47.619 0.00 0.00 0.00 4.20
2193 5019 2.027745 TGAGCATGAGAACAAGAGGGAC 60.028 50.000 0.00 0.00 0.00 4.46
2194 5020 1.980765 AGCATGAGAACAAGAGGGACA 59.019 47.619 0.00 0.00 0.00 4.02
2195 5021 2.575279 AGCATGAGAACAAGAGGGACAT 59.425 45.455 0.00 0.00 0.00 3.06
2196 5022 2.941720 GCATGAGAACAAGAGGGACATC 59.058 50.000 0.00 0.00 0.00 3.06
2197 5023 3.539604 CATGAGAACAAGAGGGACATCC 58.460 50.000 0.00 0.00 0.00 3.51
2198 5024 2.619931 TGAGAACAAGAGGGACATCCA 58.380 47.619 0.00 0.00 38.24 3.41
2199 5025 2.303022 TGAGAACAAGAGGGACATCCAC 59.697 50.000 0.00 0.00 38.24 4.02
2200 5026 1.276421 AGAACAAGAGGGACATCCACG 59.724 52.381 0.00 0.00 38.24 4.94
2201 5027 0.321653 AACAAGAGGGACATCCACGC 60.322 55.000 0.00 0.00 38.24 5.34
2202 5028 1.811266 CAAGAGGGACATCCACGCG 60.811 63.158 3.53 3.53 38.24 6.01
2203 5029 3.665675 AAGAGGGACATCCACGCGC 62.666 63.158 5.73 0.00 38.24 6.86
2207 5033 4.865761 GGACATCCACGCGCGCTA 62.866 66.667 32.58 16.35 35.64 4.26
2208 5034 3.617538 GACATCCACGCGCGCTAC 61.618 66.667 32.58 10.72 0.00 3.58
2209 5035 4.129737 ACATCCACGCGCGCTACT 62.130 61.111 32.58 7.43 0.00 2.57
2210 5036 3.323136 CATCCACGCGCGCTACTC 61.323 66.667 32.58 0.00 0.00 2.59
2211 5037 4.570663 ATCCACGCGCGCTACTCC 62.571 66.667 32.58 0.00 0.00 3.85
2243 5069 3.508840 GCGGGTTGCGGGAATGAG 61.509 66.667 0.00 0.00 0.00 2.90
2244 5070 3.508840 CGGGTTGCGGGAATGAGC 61.509 66.667 0.00 0.00 0.00 4.26
2245 5071 3.140814 GGGTTGCGGGAATGAGCC 61.141 66.667 0.00 0.00 0.00 4.70
2246 5072 3.508840 GGTTGCGGGAATGAGCCG 61.509 66.667 0.00 0.00 0.00 5.52
2247 5073 2.435938 GTTGCGGGAATGAGCCGA 60.436 61.111 0.00 0.00 0.00 5.54
2248 5074 2.125147 TTGCGGGAATGAGCCGAG 60.125 61.111 0.00 0.00 0.00 4.63
2249 5075 4.838152 TGCGGGAATGAGCCGAGC 62.838 66.667 0.00 0.00 34.29 5.03
2252 5078 3.849951 GGGAATGAGCCGAGCCGA 61.850 66.667 0.00 0.00 0.00 5.54
2253 5079 2.423446 GGAATGAGCCGAGCCGAT 59.577 61.111 0.00 0.00 0.00 4.18
2254 5080 1.958205 GGAATGAGCCGAGCCGATG 60.958 63.158 0.00 0.00 0.00 3.84
2255 5081 1.227380 GAATGAGCCGAGCCGATGT 60.227 57.895 0.00 0.00 0.00 3.06
2256 5082 1.218230 GAATGAGCCGAGCCGATGTC 61.218 60.000 0.00 0.00 0.00 3.06
2257 5083 1.680522 AATGAGCCGAGCCGATGTCT 61.681 55.000 0.00 0.00 0.00 3.41
2258 5084 0.823769 ATGAGCCGAGCCGATGTCTA 60.824 55.000 0.00 0.00 0.00 2.59
2259 5085 1.035385 TGAGCCGAGCCGATGTCTAA 61.035 55.000 0.00 0.00 0.00 2.10
2260 5086 0.102481 GAGCCGAGCCGATGTCTAAA 59.898 55.000 0.00 0.00 0.00 1.85
2261 5087 0.753262 AGCCGAGCCGATGTCTAAAT 59.247 50.000 0.00 0.00 0.00 1.40
2262 5088 1.139058 AGCCGAGCCGATGTCTAAATT 59.861 47.619 0.00 0.00 0.00 1.82
2263 5089 1.940613 GCCGAGCCGATGTCTAAATTT 59.059 47.619 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.975660 TTCTTCCCACCACCTTTTCG 58.024 50.000 0.00 0.00 0.00 3.46
1 2 3.704566 ACTTTTCTTCCCACCACCTTTTC 59.295 43.478 0.00 0.00 0.00 2.29
2 3 3.450817 CACTTTTCTTCCCACCACCTTTT 59.549 43.478 0.00 0.00 0.00 2.27
3 4 3.031013 CACTTTTCTTCCCACCACCTTT 58.969 45.455 0.00 0.00 0.00 3.11
4 5 2.243736 TCACTTTTCTTCCCACCACCTT 59.756 45.455 0.00 0.00 0.00 3.50
5 6 1.850345 TCACTTTTCTTCCCACCACCT 59.150 47.619 0.00 0.00 0.00 4.00
6 7 2.358322 TCACTTTTCTTCCCACCACC 57.642 50.000 0.00 0.00 0.00 4.61
7 8 4.501400 CCATTTCACTTTTCTTCCCACCAC 60.501 45.833 0.00 0.00 0.00 4.16
8 9 3.640967 CCATTTCACTTTTCTTCCCACCA 59.359 43.478 0.00 0.00 0.00 4.17
9 10 3.006859 CCCATTTCACTTTTCTTCCCACC 59.993 47.826 0.00 0.00 0.00 4.61
10 11 3.895041 TCCCATTTCACTTTTCTTCCCAC 59.105 43.478 0.00 0.00 0.00 4.61
11 12 4.191804 TCCCATTTCACTTTTCTTCCCA 57.808 40.909 0.00 0.00 0.00 4.37
12 13 4.262463 GGTTCCCATTTCACTTTTCTTCCC 60.262 45.833 0.00 0.00 0.00 3.97
13 14 4.588951 AGGTTCCCATTTCACTTTTCTTCC 59.411 41.667 0.00 0.00 0.00 3.46
14 15 5.791336 AGGTTCCCATTTCACTTTTCTTC 57.209 39.130 0.00 0.00 0.00 2.87
15 16 6.238925 CGTAAGGTTCCCATTTCACTTTTCTT 60.239 38.462 0.00 0.00 0.00 2.52
16 17 5.240844 CGTAAGGTTCCCATTTCACTTTTCT 59.759 40.000 0.00 0.00 0.00 2.52
17 18 5.009310 ACGTAAGGTTCCCATTTCACTTTTC 59.991 40.000 0.00 0.00 46.39 2.29
18 19 4.891168 ACGTAAGGTTCCCATTTCACTTTT 59.109 37.500 0.00 0.00 46.39 2.27
19 20 4.466827 ACGTAAGGTTCCCATTTCACTTT 58.533 39.130 0.00 0.00 46.39 2.66
20 21 4.094830 ACGTAAGGTTCCCATTTCACTT 57.905 40.909 0.00 0.00 46.39 3.16
21 22 3.782656 ACGTAAGGTTCCCATTTCACT 57.217 42.857 0.00 0.00 46.39 3.41
76 77 9.346725 CGCAAGAAAGCTTTTCTTTATCTTTAT 57.653 29.630 14.05 0.00 44.58 1.40
77 78 8.349983 ACGCAAGAAAGCTTTTCTTTATCTTTA 58.650 29.630 14.05 0.00 44.58 1.85
78 79 7.203218 ACGCAAGAAAGCTTTTCTTTATCTTT 58.797 30.769 14.05 0.00 44.58 2.52
79 80 6.739112 ACGCAAGAAAGCTTTTCTTTATCTT 58.261 32.000 14.05 7.30 44.58 2.40
80 81 6.319141 ACGCAAGAAAGCTTTTCTTTATCT 57.681 33.333 14.05 0.49 44.58 1.98
81 82 6.993175 AACGCAAGAAAGCTTTTCTTTATC 57.007 33.333 14.05 0.00 44.58 1.75
82 83 7.394870 GAAACGCAAGAAAGCTTTTCTTTAT 57.605 32.000 14.05 3.80 44.53 1.40
83 84 6.806120 GAAACGCAAGAAAGCTTTTCTTTA 57.194 33.333 14.05 0.00 44.53 1.85
84 85 5.702622 GAAACGCAAGAAAGCTTTTCTTT 57.297 34.783 14.05 5.98 44.53 2.52
87 88 6.806120 TTAAGAAACGCAAGAAAGCTTTTC 57.194 33.333 14.05 6.83 46.78 2.29
88 89 6.255670 CCTTTAAGAAACGCAAGAAAGCTTTT 59.744 34.615 14.05 0.54 38.47 2.27
89 90 5.748630 CCTTTAAGAAACGCAAGAAAGCTTT 59.251 36.000 12.53 12.53 43.62 3.51
90 91 5.281727 CCTTTAAGAAACGCAAGAAAGCTT 58.718 37.500 0.00 0.00 43.62 3.74
91 92 4.261614 CCCTTTAAGAAACGCAAGAAAGCT 60.262 41.667 0.00 0.00 43.62 3.74
92 93 3.981416 CCCTTTAAGAAACGCAAGAAAGC 59.019 43.478 0.00 0.00 43.62 3.51
93 94 5.183014 ACCCTTTAAGAAACGCAAGAAAG 57.817 39.130 0.00 0.00 43.62 2.62
94 95 5.358725 AGAACCCTTTAAGAAACGCAAGAAA 59.641 36.000 0.00 0.00 43.62 2.52
95 96 4.885325 AGAACCCTTTAAGAAACGCAAGAA 59.115 37.500 0.00 0.00 43.62 2.52
96 97 4.457466 AGAACCCTTTAAGAAACGCAAGA 58.543 39.130 0.00 0.00 43.62 3.02
98 99 4.202070 CCAAGAACCCTTTAAGAAACGCAA 60.202 41.667 0.00 0.00 0.00 4.85
99 100 3.316868 CCAAGAACCCTTTAAGAAACGCA 59.683 43.478 0.00 0.00 0.00 5.24
100 101 3.317149 ACCAAGAACCCTTTAAGAAACGC 59.683 43.478 0.00 0.00 0.00 4.84
101 102 5.509716 AACCAAGAACCCTTTAAGAAACG 57.490 39.130 0.00 0.00 0.00 3.60
102 103 7.101054 ACAAAACCAAGAACCCTTTAAGAAAC 58.899 34.615 0.00 0.00 0.00 2.78
103 104 7.247456 ACAAAACCAAGAACCCTTTAAGAAA 57.753 32.000 0.00 0.00 0.00 2.52
104 105 6.860790 ACAAAACCAAGAACCCTTTAAGAA 57.139 33.333 0.00 0.00 0.00 2.52
105 106 6.666113 AGAACAAAACCAAGAACCCTTTAAGA 59.334 34.615 0.00 0.00 0.00 2.10
106 107 6.873997 AGAACAAAACCAAGAACCCTTTAAG 58.126 36.000 0.00 0.00 0.00 1.85
107 108 6.860790 AGAACAAAACCAAGAACCCTTTAA 57.139 33.333 0.00 0.00 0.00 1.52
108 109 6.404954 CGAAGAACAAAACCAAGAACCCTTTA 60.405 38.462 0.00 0.00 0.00 1.85
109 110 5.623596 CGAAGAACAAAACCAAGAACCCTTT 60.624 40.000 0.00 0.00 0.00 3.11
110 111 4.142249 CGAAGAACAAAACCAAGAACCCTT 60.142 41.667 0.00 0.00 0.00 3.95
111 112 3.380320 CGAAGAACAAAACCAAGAACCCT 59.620 43.478 0.00 0.00 0.00 4.34
112 113 3.129813 ACGAAGAACAAAACCAAGAACCC 59.870 43.478 0.00 0.00 0.00 4.11
113 114 4.102649 CACGAAGAACAAAACCAAGAACC 58.897 43.478 0.00 0.00 0.00 3.62
114 115 4.102649 CCACGAAGAACAAAACCAAGAAC 58.897 43.478 0.00 0.00 0.00 3.01
115 116 3.759618 ACCACGAAGAACAAAACCAAGAA 59.240 39.130 0.00 0.00 0.00 2.52
116 117 3.349022 ACCACGAAGAACAAAACCAAGA 58.651 40.909 0.00 0.00 0.00 3.02
117 118 3.488553 GGACCACGAAGAACAAAACCAAG 60.489 47.826 0.00 0.00 0.00 3.61
118 119 2.424246 GGACCACGAAGAACAAAACCAA 59.576 45.455 0.00 0.00 0.00 3.67
119 120 2.018515 GGACCACGAAGAACAAAACCA 58.981 47.619 0.00 0.00 0.00 3.67
120 121 2.018515 TGGACCACGAAGAACAAAACC 58.981 47.619 0.00 0.00 0.00 3.27
121 122 2.540973 GCTGGACCACGAAGAACAAAAC 60.541 50.000 0.00 0.00 0.00 2.43
122 123 1.673920 GCTGGACCACGAAGAACAAAA 59.326 47.619 0.00 0.00 0.00 2.44
123 124 1.305201 GCTGGACCACGAAGAACAAA 58.695 50.000 0.00 0.00 0.00 2.83
124 125 0.534203 GGCTGGACCACGAAGAACAA 60.534 55.000 0.00 0.00 38.86 2.83
125 126 1.070786 GGCTGGACCACGAAGAACA 59.929 57.895 0.00 0.00 38.86 3.18
126 127 0.606604 TAGGCTGGACCACGAAGAAC 59.393 55.000 0.00 0.00 43.14 3.01
127 128 1.001633 GTTAGGCTGGACCACGAAGAA 59.998 52.381 0.00 0.00 43.14 2.52
128 129 0.606604 GTTAGGCTGGACCACGAAGA 59.393 55.000 0.00 0.00 43.14 2.87
129 130 0.608640 AGTTAGGCTGGACCACGAAG 59.391 55.000 0.00 0.00 43.14 3.79
130 131 1.001633 GAAGTTAGGCTGGACCACGAA 59.998 52.381 0.00 0.00 43.14 3.85
131 132 0.606604 GAAGTTAGGCTGGACCACGA 59.393 55.000 0.00 0.00 43.14 4.35
132 133 0.736325 CGAAGTTAGGCTGGACCACG 60.736 60.000 0.00 1.55 43.14 4.94
133 134 1.019805 GCGAAGTTAGGCTGGACCAC 61.020 60.000 0.00 0.00 43.14 4.16
134 135 1.192146 AGCGAAGTTAGGCTGGACCA 61.192 55.000 0.00 0.00 43.14 4.02
135 136 0.036294 AAGCGAAGTTAGGCTGGACC 60.036 55.000 0.00 0.00 39.93 4.46
136 137 1.732809 GAAAGCGAAGTTAGGCTGGAC 59.267 52.381 0.00 0.00 39.93 4.02
137 138 1.338769 GGAAAGCGAAGTTAGGCTGGA 60.339 52.381 0.00 0.00 39.93 3.86
191 192 2.174639 GAGGTGAGAGGAGGAGATGAGA 59.825 54.545 0.00 0.00 0.00 3.27
195 196 1.499007 GGAGAGGTGAGAGGAGGAGAT 59.501 57.143 0.00 0.00 0.00 2.75
203 204 2.493973 GCGCTGGAGAGGTGAGAG 59.506 66.667 0.00 0.00 0.00 3.20
204 205 3.443925 CGCGCTGGAGAGGTGAGA 61.444 66.667 5.56 0.00 0.00 3.27
262 263 3.997400 CTCGACCGGGGAGAGAGCA 62.997 68.421 17.26 0.00 34.13 4.26
341 342 2.766229 GGTGGAGGAGGAGGAGCC 60.766 72.222 0.00 0.00 0.00 4.70
351 352 4.354943 AGGGGGTGGAGGTGGAGG 62.355 72.222 0.00 0.00 0.00 4.30
363 364 4.431131 AACGGATGCAGCAGGGGG 62.431 66.667 7.11 0.00 0.00 5.40
364 365 3.136123 CAACGGATGCAGCAGGGG 61.136 66.667 7.11 0.00 0.00 4.79
388 389 1.317431 TACCTACGGTGCAGCGATGT 61.317 55.000 41.29 31.94 36.19 3.06
406 407 2.532250 TGTCAGACAGATCCTGCCTA 57.468 50.000 0.00 0.00 34.37 3.93
424 425 0.107800 CACACAGATGAGAGCCCCTG 60.108 60.000 0.00 0.00 0.00 4.45
425 426 0.546267 ACACACAGATGAGAGCCCCT 60.546 55.000 0.00 0.00 0.00 4.79
476 477 7.201644 CCGCAGTCTATGATTACAGAATTTTGT 60.202 37.037 6.85 6.85 35.09 2.83
579 580 2.976882 ACAGCTACCCCTTACAGAACAA 59.023 45.455 0.00 0.00 0.00 2.83
619 620 2.906389 AGAATCTGGCTAGGTGTTGACA 59.094 45.455 0.00 0.00 0.00 3.58
620 621 3.618690 AGAATCTGGCTAGGTGTTGAC 57.381 47.619 0.00 0.00 0.00 3.18
627 634 3.251484 TGGGGATTAGAATCTGGCTAGG 58.749 50.000 0.00 0.00 35.73 3.02
650 657 8.100791 ACAAATACTGGAGTGAAATAAGCACTA 58.899 33.333 0.00 0.00 45.94 2.74
654 661 8.296713 TGAAACAAATACTGGAGTGAAATAAGC 58.703 33.333 0.00 0.00 0.00 3.09
658 665 7.671398 AGGATGAAACAAATACTGGAGTGAAAT 59.329 33.333 0.00 0.00 0.00 2.17
689 696 1.951631 GCGACGCAATCTAGGGAGC 60.952 63.158 16.42 0.00 0.00 4.70
720 727 2.591571 TCTGCATCAGAGGATCGTTG 57.408 50.000 0.00 0.00 42.67 4.10
733 740 7.568349 TCTGAAACTAATAATGGACTCTGCAT 58.432 34.615 0.00 0.00 0.00 3.96
774 783 3.988976 ATTAGAGGCAGTTCTGAAGCA 57.011 42.857 3.84 0.00 0.00 3.91
928 940 4.058797 GGTTGACACCGGTTCCAG 57.941 61.111 2.97 0.00 31.60 3.86
955 967 6.115446 CCTGAGAATAAACATGGTAGCAGAA 58.885 40.000 0.00 0.00 0.00 3.02
994 1009 3.885724 TGTCGCACTATTCATCTCCAA 57.114 42.857 0.00 0.00 0.00 3.53
1006 1021 1.068472 CGGTTCTAGACTTGTCGCACT 60.068 52.381 0.00 0.00 0.00 4.40
1007 1022 1.068748 TCGGTTCTAGACTTGTCGCAC 60.069 52.381 0.00 0.00 0.00 5.34
1026 1041 1.676967 CAGGGTGGCCTTTGCTCTC 60.677 63.158 3.32 0.00 37.74 3.20
1062 1077 1.203523 GACTCGGAGCTGACTGTGAAT 59.796 52.381 4.58 0.00 0.00 2.57
1170 1185 4.362470 GATGGATTCATCAGGGACATCA 57.638 45.455 9.27 0.00 46.74 3.07
1379 1700 1.881973 GCATGTTCTCTGACCTTTGCA 59.118 47.619 0.00 0.00 0.00 4.08
1502 1826 1.065401 ACAACAACATTGAGCACCGTG 59.935 47.619 0.00 0.00 0.00 4.94
1525 1849 4.564782 ACCCTGCACCTATCATCATATG 57.435 45.455 0.00 0.00 0.00 1.78
1534 1858 1.768870 AGCGAATTACCCTGCACCTAT 59.231 47.619 0.00 0.00 0.00 2.57
1546 1870 6.096987 AGAGTCATACAGAAAGGAGCGAATTA 59.903 38.462 0.00 0.00 0.00 1.40
1565 1889 5.698741 ATCATCACATACCCAAAGAGTCA 57.301 39.130 0.00 0.00 0.00 3.41
1604 1928 1.065926 TGTGCTGAAGCCCAGTCATAG 60.066 52.381 0.00 0.00 44.71 2.23
1646 1970 5.357878 CCTTACTGCACATAACATGGACAAT 59.642 40.000 0.00 0.00 33.60 2.71
1672 1996 3.370104 TGTTGGATTTCAGGTTGTTGGT 58.630 40.909 0.00 0.00 0.00 3.67
1673 1997 4.370917 CTTGTTGGATTTCAGGTTGTTGG 58.629 43.478 0.00 0.00 0.00 3.77
1816 2143 2.173569 AGGAACAAAACTGACAGAGCCT 59.826 45.455 10.08 2.08 0.00 4.58
1860 2735 0.236711 CAAAACTGACAGAGCCTGCG 59.763 55.000 10.08 0.00 34.37 5.18
1862 2737 2.291741 GGAACAAAACTGACAGAGCCTG 59.708 50.000 10.08 3.52 37.52 4.85
1869 2744 2.650322 GGGTGAGGAACAAAACTGACA 58.350 47.619 0.00 0.00 0.00 3.58
1872 2747 0.310854 GCGGGTGAGGAACAAAACTG 59.689 55.000 0.00 0.00 0.00 3.16
1873 2748 1.164041 CGCGGGTGAGGAACAAAACT 61.164 55.000 0.00 0.00 0.00 2.66
1875 2750 0.748729 AACGCGGGTGAGGAACAAAA 60.749 50.000 12.47 0.00 0.00 2.44
1876 2751 1.153127 AACGCGGGTGAGGAACAAA 60.153 52.632 12.47 0.00 0.00 2.83
1879 2754 3.110178 CGAACGCGGGTGAGGAAC 61.110 66.667 12.47 0.00 0.00 3.62
1914 4740 0.467844 TTCAGCACCACACCAGCAAT 60.468 50.000 0.00 0.00 0.00 3.56
1992 4818 7.015682 TGTCCCAAAATAAACTAAATTCCAGCA 59.984 33.333 0.00 0.00 0.00 4.41
1993 4819 7.382898 TGTCCCAAAATAAACTAAATTCCAGC 58.617 34.615 0.00 0.00 0.00 4.85
1994 4820 7.545615 GCTGTCCCAAAATAAACTAAATTCCAG 59.454 37.037 0.00 0.00 0.00 3.86
1995 4821 7.382898 GCTGTCCCAAAATAAACTAAATTCCA 58.617 34.615 0.00 0.00 0.00 3.53
1996 4822 6.816640 GGCTGTCCCAAAATAAACTAAATTCC 59.183 38.462 0.00 0.00 0.00 3.01
1997 4823 7.827819 GGCTGTCCCAAAATAAACTAAATTC 57.172 36.000 0.00 0.00 0.00 2.17
2014 4840 5.437060 TCTGAAATAGTTATTGGGCTGTCC 58.563 41.667 0.00 0.00 0.00 4.02
2015 4841 7.391148 TTTCTGAAATAGTTATTGGGCTGTC 57.609 36.000 0.00 0.00 0.00 3.51
2016 4842 7.961326 ATTTCTGAAATAGTTATTGGGCTGT 57.039 32.000 13.69 0.00 0.00 4.40
2017 4843 7.922811 GGAATTTCTGAAATAGTTATTGGGCTG 59.077 37.037 15.45 0.00 0.00 4.85
2018 4844 7.841222 AGGAATTTCTGAAATAGTTATTGGGCT 59.159 33.333 15.45 0.00 0.00 5.19
2019 4845 8.011844 AGGAATTTCTGAAATAGTTATTGGGC 57.988 34.615 15.45 0.00 0.00 5.36
2035 4861 9.800572 GCCTCTAGGATTTATTTAGGAATTTCT 57.199 33.333 0.00 0.00 37.39 2.52
2036 4862 9.015367 GGCCTCTAGGATTTATTTAGGAATTTC 57.985 37.037 0.00 0.00 37.39 2.17
2037 4863 7.950684 GGGCCTCTAGGATTTATTTAGGAATTT 59.049 37.037 0.84 0.00 37.39 1.82
2038 4864 7.075009 TGGGCCTCTAGGATTTATTTAGGAATT 59.925 37.037 4.53 0.00 37.39 2.17
2039 4865 6.566480 TGGGCCTCTAGGATTTATTTAGGAAT 59.434 38.462 4.53 0.00 37.39 3.01
2040 4866 5.914716 TGGGCCTCTAGGATTTATTTAGGAA 59.085 40.000 4.53 0.00 37.39 3.36
2041 4867 5.309806 GTGGGCCTCTAGGATTTATTTAGGA 59.690 44.000 4.53 0.00 37.39 2.94
2042 4868 5.310857 AGTGGGCCTCTAGGATTTATTTAGG 59.689 44.000 6.27 0.00 37.39 2.69
2043 4869 6.441088 AGTGGGCCTCTAGGATTTATTTAG 57.559 41.667 6.27 0.00 37.39 1.85
2044 4870 6.841781 AAGTGGGCCTCTAGGATTTATTTA 57.158 37.500 8.81 0.00 37.39 1.40
2045 4871 5.734031 AAGTGGGCCTCTAGGATTTATTT 57.266 39.130 8.81 0.00 37.39 1.40
2046 4872 6.410504 GGTTAAGTGGGCCTCTAGGATTTATT 60.411 42.308 8.81 0.00 37.39 1.40
2047 4873 5.073280 GGTTAAGTGGGCCTCTAGGATTTAT 59.927 44.000 8.81 0.00 37.39 1.40
2048 4874 4.411212 GGTTAAGTGGGCCTCTAGGATTTA 59.589 45.833 8.81 0.00 37.39 1.40
2049 4875 3.202373 GGTTAAGTGGGCCTCTAGGATTT 59.798 47.826 8.81 0.00 37.39 2.17
2050 4876 2.778270 GGTTAAGTGGGCCTCTAGGATT 59.222 50.000 8.81 0.00 37.39 3.01
2051 4877 2.409570 GGTTAAGTGGGCCTCTAGGAT 58.590 52.381 8.81 0.00 37.39 3.24
2052 4878 1.624391 GGGTTAAGTGGGCCTCTAGGA 60.624 57.143 8.81 0.00 37.39 2.94
2053 4879 0.837940 GGGTTAAGTGGGCCTCTAGG 59.162 60.000 8.81 0.00 38.53 3.02
2054 4880 1.580059 TGGGTTAAGTGGGCCTCTAG 58.420 55.000 8.81 0.00 0.00 2.43
2055 4881 2.280308 ATGGGTTAAGTGGGCCTCTA 57.720 50.000 8.81 0.00 0.00 2.43
2056 4882 1.382914 AATGGGTTAAGTGGGCCTCT 58.617 50.000 4.53 2.86 0.00 3.69
2057 4883 1.824852 CAAATGGGTTAAGTGGGCCTC 59.175 52.381 4.53 0.00 0.00 4.70
2058 4884 1.149077 ACAAATGGGTTAAGTGGGCCT 59.851 47.619 4.53 0.00 0.00 5.19
2059 4885 1.275010 CACAAATGGGTTAAGTGGGCC 59.725 52.381 0.00 0.00 0.00 5.80
2060 4886 1.337728 GCACAAATGGGTTAAGTGGGC 60.338 52.381 0.00 0.00 0.00 5.36
2061 4887 1.967066 TGCACAAATGGGTTAAGTGGG 59.033 47.619 0.00 0.00 0.00 4.61
2062 4888 3.554752 CCTTGCACAAATGGGTTAAGTGG 60.555 47.826 0.00 0.00 0.00 4.00
2063 4889 3.652274 CCTTGCACAAATGGGTTAAGTG 58.348 45.455 0.00 0.00 0.00 3.16
2064 4890 2.037121 GCCTTGCACAAATGGGTTAAGT 59.963 45.455 0.00 0.00 0.00 2.24
2065 4891 2.036992 TGCCTTGCACAAATGGGTTAAG 59.963 45.455 0.00 0.00 31.71 1.85
2066 4892 2.042464 TGCCTTGCACAAATGGGTTAA 58.958 42.857 0.00 0.00 31.71 2.01
2067 4893 1.709578 TGCCTTGCACAAATGGGTTA 58.290 45.000 0.00 0.00 31.71 2.85
2068 4894 0.835941 TTGCCTTGCACAAATGGGTT 59.164 45.000 0.00 0.00 38.71 4.11
2069 4895 0.393820 CTTGCCTTGCACAAATGGGT 59.606 50.000 0.00 0.00 38.71 4.51
2070 4896 0.320946 CCTTGCCTTGCACAAATGGG 60.321 55.000 0.00 0.00 38.71 4.00
2071 4897 0.320946 CCCTTGCCTTGCACAAATGG 60.321 55.000 0.00 0.00 38.71 3.16
2072 4898 0.680618 TCCCTTGCCTTGCACAAATG 59.319 50.000 0.00 0.00 38.71 2.32
2073 4899 1.648116 ATCCCTTGCCTTGCACAAAT 58.352 45.000 0.00 0.00 38.71 2.32
2074 4900 2.170166 CTATCCCTTGCCTTGCACAAA 58.830 47.619 0.00 0.00 38.71 2.83
2075 4901 1.075374 ACTATCCCTTGCCTTGCACAA 59.925 47.619 0.00 0.00 38.71 3.33
2076 4902 0.698238 ACTATCCCTTGCCTTGCACA 59.302 50.000 0.00 0.00 38.71 4.57
2077 4903 2.710096 TACTATCCCTTGCCTTGCAC 57.290 50.000 0.00 0.00 38.71 4.57
2078 4904 3.951563 AATACTATCCCTTGCCTTGCA 57.048 42.857 0.00 0.00 36.47 4.08
2079 4905 5.770162 ACATTAATACTATCCCTTGCCTTGC 59.230 40.000 0.00 0.00 0.00 4.01
2080 4906 7.823745 AACATTAATACTATCCCTTGCCTTG 57.176 36.000 0.00 0.00 0.00 3.61
2081 4907 9.574516 CTAAACATTAATACTATCCCTTGCCTT 57.425 33.333 0.00 0.00 0.00 4.35
2082 4908 8.724310 ACTAAACATTAATACTATCCCTTGCCT 58.276 33.333 0.00 0.00 0.00 4.75
2083 4909 8.919777 ACTAAACATTAATACTATCCCTTGCC 57.080 34.615 0.00 0.00 0.00 4.52
2093 4919 9.681062 AGCAATGTGGTACTAAACATTAATACT 57.319 29.630 16.40 11.31 43.41 2.12
2096 4922 9.681062 ACTAGCAATGTGGTACTAAACATTAAT 57.319 29.630 16.40 12.32 43.41 1.40
2097 4923 9.509956 AACTAGCAATGTGGTACTAAACATTAA 57.490 29.630 16.40 8.64 43.41 1.40
2098 4924 8.941977 CAACTAGCAATGTGGTACTAAACATTA 58.058 33.333 16.40 6.28 43.41 1.90
2099 4925 7.663905 TCAACTAGCAATGTGGTACTAAACATT 59.336 33.333 13.06 13.06 45.54 2.71
2100 4926 7.165485 TCAACTAGCAATGTGGTACTAAACAT 58.835 34.615 0.00 0.00 38.66 2.71
2101 4927 6.526526 TCAACTAGCAATGTGGTACTAAACA 58.473 36.000 0.00 0.00 0.00 2.83
2102 4928 6.649557 ACTCAACTAGCAATGTGGTACTAAAC 59.350 38.462 0.00 0.00 0.00 2.01
2103 4929 6.649141 CACTCAACTAGCAATGTGGTACTAAA 59.351 38.462 0.00 0.00 0.00 1.85
2104 4930 6.163476 CACTCAACTAGCAATGTGGTACTAA 58.837 40.000 0.00 0.00 0.00 2.24
2105 4931 5.337250 CCACTCAACTAGCAATGTGGTACTA 60.337 44.000 13.94 0.00 39.80 1.82
2106 4932 4.563580 CCACTCAACTAGCAATGTGGTACT 60.564 45.833 13.94 0.00 39.80 2.73
2107 4933 3.684788 CCACTCAACTAGCAATGTGGTAC 59.315 47.826 13.94 0.00 39.80 3.34
2108 4934 3.307410 CCCACTCAACTAGCAATGTGGTA 60.307 47.826 18.14 0.00 42.20 3.25
2109 4935 2.553028 CCCACTCAACTAGCAATGTGGT 60.553 50.000 18.14 5.93 42.20 4.16
2110 4936 2.086869 CCCACTCAACTAGCAATGTGG 58.913 52.381 14.77 14.77 43.06 4.17
2111 4937 3.005554 CTCCCACTCAACTAGCAATGTG 58.994 50.000 0.00 0.00 0.00 3.21
2112 4938 2.639839 ACTCCCACTCAACTAGCAATGT 59.360 45.455 0.00 0.00 0.00 2.71
2113 4939 3.340814 ACTCCCACTCAACTAGCAATG 57.659 47.619 0.00 0.00 0.00 2.82
2114 4940 3.560025 CCAACTCCCACTCAACTAGCAAT 60.560 47.826 0.00 0.00 0.00 3.56
2115 4941 2.224523 CCAACTCCCACTCAACTAGCAA 60.225 50.000 0.00 0.00 0.00 3.91
2116 4942 1.347707 CCAACTCCCACTCAACTAGCA 59.652 52.381 0.00 0.00 0.00 3.49
2117 4943 1.623811 TCCAACTCCCACTCAACTAGC 59.376 52.381 0.00 0.00 0.00 3.42
2118 4944 2.028020 GGTCCAACTCCCACTCAACTAG 60.028 54.545 0.00 0.00 0.00 2.57
2119 4945 1.975680 GGTCCAACTCCCACTCAACTA 59.024 52.381 0.00 0.00 0.00 2.24
2120 4946 0.765510 GGTCCAACTCCCACTCAACT 59.234 55.000 0.00 0.00 0.00 3.16
2121 4947 0.765510 AGGTCCAACTCCCACTCAAC 59.234 55.000 0.00 0.00 0.00 3.18
2122 4948 1.056660 GAGGTCCAACTCCCACTCAA 58.943 55.000 0.00 0.00 0.00 3.02
2123 4949 2.759985 GAGGTCCAACTCCCACTCA 58.240 57.895 0.00 0.00 0.00 3.41
2141 4967 4.359434 GGAAAGAGCCTCCCTTATAAGG 57.641 50.000 22.75 22.75 46.06 2.69
2150 4976 0.322906 CAAGTGGGGAAAGAGCCTCC 60.323 60.000 0.00 0.00 0.00 4.30
2151 4977 0.402121 ACAAGTGGGGAAAGAGCCTC 59.598 55.000 0.00 0.00 0.00 4.70
2152 4978 1.742308 TACAAGTGGGGAAAGAGCCT 58.258 50.000 0.00 0.00 0.00 4.58
2153 4979 2.026262 TCATACAAGTGGGGAAAGAGCC 60.026 50.000 0.00 0.00 0.00 4.70
2154 4980 3.274288 CTCATACAAGTGGGGAAAGAGC 58.726 50.000 0.00 0.00 0.00 4.09
2155 4981 3.274288 GCTCATACAAGTGGGGAAAGAG 58.726 50.000 0.00 0.00 0.00 2.85
2156 4982 2.642311 TGCTCATACAAGTGGGGAAAGA 59.358 45.455 0.00 0.00 0.00 2.52
2157 4983 3.071874 TGCTCATACAAGTGGGGAAAG 57.928 47.619 0.00 0.00 0.00 2.62
2158 4984 3.010027 TCATGCTCATACAAGTGGGGAAA 59.990 43.478 0.00 0.00 0.00 3.13
2159 4985 2.575735 TCATGCTCATACAAGTGGGGAA 59.424 45.455 0.00 0.00 0.00 3.97
2160 4986 2.171237 CTCATGCTCATACAAGTGGGGA 59.829 50.000 0.00 0.00 0.00 4.81
2161 4987 2.171237 TCTCATGCTCATACAAGTGGGG 59.829 50.000 0.00 0.00 0.00 4.96
2162 4988 3.548745 TCTCATGCTCATACAAGTGGG 57.451 47.619 0.00 0.00 0.00 4.61
2163 4989 4.256110 TGTTCTCATGCTCATACAAGTGG 58.744 43.478 0.00 0.00 0.00 4.00
2164 4990 5.640783 TCTTGTTCTCATGCTCATACAAGTG 59.359 40.000 16.50 2.07 41.76 3.16
2165 4991 5.798132 TCTTGTTCTCATGCTCATACAAGT 58.202 37.500 16.50 0.00 41.76 3.16
2166 4992 5.293814 CCTCTTGTTCTCATGCTCATACAAG 59.706 44.000 13.21 13.21 42.18 3.16
2167 4993 5.181009 CCTCTTGTTCTCATGCTCATACAA 58.819 41.667 0.00 0.00 0.00 2.41
2168 4994 4.383444 CCCTCTTGTTCTCATGCTCATACA 60.383 45.833 0.00 0.00 0.00 2.29
2169 4995 4.125703 CCCTCTTGTTCTCATGCTCATAC 58.874 47.826 0.00 0.00 0.00 2.39
2170 4996 4.033009 TCCCTCTTGTTCTCATGCTCATA 58.967 43.478 0.00 0.00 0.00 2.15
2171 4997 2.842496 TCCCTCTTGTTCTCATGCTCAT 59.158 45.455 0.00 0.00 0.00 2.90
2172 4998 2.027745 GTCCCTCTTGTTCTCATGCTCA 60.028 50.000 0.00 0.00 0.00 4.26
2173 4999 2.027745 TGTCCCTCTTGTTCTCATGCTC 60.028 50.000 0.00 0.00 0.00 4.26
2174 5000 1.980765 TGTCCCTCTTGTTCTCATGCT 59.019 47.619 0.00 0.00 0.00 3.79
2175 5001 2.479566 TGTCCCTCTTGTTCTCATGC 57.520 50.000 0.00 0.00 0.00 4.06
2176 5002 3.054875 TGGATGTCCCTCTTGTTCTCATG 60.055 47.826 0.00 0.00 35.38 3.07
2177 5003 3.054802 GTGGATGTCCCTCTTGTTCTCAT 60.055 47.826 0.00 0.00 35.38 2.90
2178 5004 2.303022 GTGGATGTCCCTCTTGTTCTCA 59.697 50.000 0.00 0.00 35.38 3.27
2179 5005 2.675317 CGTGGATGTCCCTCTTGTTCTC 60.675 54.545 0.00 0.00 35.38 2.87
2180 5006 1.276421 CGTGGATGTCCCTCTTGTTCT 59.724 52.381 0.00 0.00 35.38 3.01
2181 5007 1.726853 CGTGGATGTCCCTCTTGTTC 58.273 55.000 0.00 0.00 35.38 3.18
2182 5008 0.321653 GCGTGGATGTCCCTCTTGTT 60.322 55.000 0.00 0.00 35.38 2.83
2183 5009 1.296715 GCGTGGATGTCCCTCTTGT 59.703 57.895 0.00 0.00 35.38 3.16
2184 5010 1.811266 CGCGTGGATGTCCCTCTTG 60.811 63.158 0.00 0.00 35.38 3.02
2185 5011 2.579201 CGCGTGGATGTCCCTCTT 59.421 61.111 0.00 0.00 35.38 2.85
2186 5012 4.148825 GCGCGTGGATGTCCCTCT 62.149 66.667 8.43 0.00 35.38 3.69
2190 5016 4.865761 TAGCGCGCGTGGATGTCC 62.866 66.667 32.35 11.90 0.00 4.02
2191 5017 3.617538 GTAGCGCGCGTGGATGTC 61.618 66.667 32.35 12.72 0.00 3.06
2192 5018 4.129737 AGTAGCGCGCGTGGATGT 62.130 61.111 32.35 8.96 0.00 3.06
2193 5019 3.323136 GAGTAGCGCGCGTGGATG 61.323 66.667 32.35 1.79 0.00 3.51
2194 5020 4.570663 GGAGTAGCGCGCGTGGAT 62.571 66.667 32.35 15.57 0.00 3.41
2226 5052 3.508840 CTCATTCCCGCAACCCGC 61.509 66.667 0.00 0.00 35.03 6.13
2227 5053 3.508840 GCTCATTCCCGCAACCCG 61.509 66.667 0.00 0.00 0.00 5.28
2228 5054 3.140814 GGCTCATTCCCGCAACCC 61.141 66.667 0.00 0.00 0.00 4.11
2229 5055 3.508840 CGGCTCATTCCCGCAACC 61.509 66.667 0.00 0.00 39.22 3.77
2230 5056 2.435938 TCGGCTCATTCCCGCAAC 60.436 61.111 0.00 0.00 45.19 4.17
2231 5057 2.125147 CTCGGCTCATTCCCGCAA 60.125 61.111 0.00 0.00 45.19 4.85
2232 5058 4.838152 GCTCGGCTCATTCCCGCA 62.838 66.667 0.00 0.00 45.19 5.69
2235 5061 3.170490 ATCGGCTCGGCTCATTCCC 62.170 63.158 0.00 0.00 0.00 3.97
2236 5062 1.958205 CATCGGCTCGGCTCATTCC 60.958 63.158 0.00 0.00 0.00 3.01
2237 5063 1.218230 GACATCGGCTCGGCTCATTC 61.218 60.000 0.00 0.00 0.00 2.67
2238 5064 1.227380 GACATCGGCTCGGCTCATT 60.227 57.895 0.00 0.00 0.00 2.57
2239 5065 0.823769 TAGACATCGGCTCGGCTCAT 60.824 55.000 0.00 0.00 0.00 2.90
2240 5066 1.035385 TTAGACATCGGCTCGGCTCA 61.035 55.000 0.00 0.00 0.00 4.26
2241 5067 0.102481 TTTAGACATCGGCTCGGCTC 59.898 55.000 0.00 0.00 0.00 4.70
2242 5068 0.753262 ATTTAGACATCGGCTCGGCT 59.247 50.000 0.00 0.00 0.00 5.52
2243 5069 1.583054 AATTTAGACATCGGCTCGGC 58.417 50.000 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.