>input_sequence_85681
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------------------------------------------------------ATGAATAGTGCGACAAGTCTAGAACC
GAGAGCAAAGGCCACCCTGGTTCTCGGAGGGGAATCATTCACAGTCAGCTCCGAGTCGGGCACCCTGTCTGAGCAGCTGG
CGGCGATGAGGGAGAAGAGCATGGTGATCCTCAAGGAGTACATCACCAAGCACAACGTCCCAAATGATGTCCCTGATGAA
TCCATCGAGGGCCCATCGGATGAGGAGGGTGAGGCACTTGCTAAAAACCCGCCCAAGAAATCAAAGAAGCAGAAGTGA--
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>chr7B_1_TraesCS7B01G451400
CGAAAAGGTGGTGGGAAGAAAAGTGAAATGGGAACCTTACGTTCTTTTTAAGTAGTATAGAGATAATAGAGATAAAATAA
AGATAAAGAAAAGCTTTCTTGCGTTTCTTAAAGGGTTCTTGGTTTTGTTCTTCGTGGTCCAGCCTAACTTCGCTTTCCGG
CCCACTAGTTCCGGCTCGGCCCAGGCCAGCCTCTCATCTCCTCCTCTCACCTCTCCAGCGCGTGCTGCCCTAACTGACGC
CGTGGAAGTGCGCGCCGCCGCCTGCTCTCTCCCCGGTCGAGCCACCGCCGCCGCCGCCTCTCCACAGCCCGAGCGTAAGA
TCTCAGTCAACCTCTCTTCCTGGCTCCTCCTCCTCCACCTCCACCCCCTGCTGCATCCGTTGCTTGCGACATCGCTGCAC
CGTAGGTAGGCAGGATCTGTCTGACAGGGGCTCTCATCTGTGTGTTGGATCCATGTATAAATTGGTCTGAAGAGCTACAA
AATTCTGTAATCATAGACTGCGGCATATGTAATTTTTTGTGTGTGTTTGGTTCTGTATGCAAGCATTTTTTAGCTCTGTA
GAAAGGATTTGGTTGCAGTTTGTTCTGTAAGGGGTAGCTGTGTTGGTACAAATGTGCAATG------TCAACACCTAGCC
AGATTCTAATCCCCATTAGTGCTTATTTCACTCCAGTATTTGTTTCATCCTCAATGCTCCCTAGATTGCGTCGCTGGAAG
GCAGCGCAACGATCCTCTGATGCAGAGTCCATTATTAGTTTCAGAACTCGACTAAAA--AAATGCTTCAGAACTGCCTCT
AATTGCCATGATAGGAT---AACCAGCAGCATTTTGCTTTGCACCGGTGAACAGTTTACAGATCATTCTCTGAATGAATG
CTCCATGCTAATGAAATTGTGGAATCGGCATTTTCTGAATACGCCGTACAACTGAAACTCTGGAACCGGTGTCAACCTTT
CCTTACTTCTGCTACCATGTTTATTCTCAGGTTAAT---CCCTGGACGTTGGAGATGAATAGTGCGACAAGTCTAGAACC
GAGAGCAAAGGCCACCCTGGTTCTCGGAGGGGAATCATTCACAGTCAGCTCCGAGTCGGGCACCCTGTCTGAGCAGCTGG
CGGCGATGAGGGAGAAGAGCATGGTGATCCTCAAGGAGTACATCACCAAGCACAACGTCCCAAATGATGTCCCTGATGAA
TCCATCGAGGGCCCATCGGATGAGGAGGGTGAGGCACTTGCTAAAAACCCGCCCAAGAAATCAAAGAAGCAGAAGTGATT
GTCCT---------------------------------------------------------------------------
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-----------------------------------------------------------------------AAATCATTT
GTCAGATGTTTTGCTTTTGAGGATAATGAATGAGCTTCAGCACAAGTGAAATGATCATCCTAATCTGGTTTGACTTGTCA
CACACTTTCTTGGTACCCCTGCAAAGGTCAGAGAACATGCTGATGCCCCTTTGCTAGCTGCTGTTTCTTTGACACGAAAA
GGTCAGAATTATTGTTAGCAGCAAA---TCTGCTTGTGTAGGAAATTGCTGCTGGTACTTGTGCACACGGTGCTCAATGT
TGTTGTCTCATATGATGATAGGTGCAGGGTAATTCGCTCCTTTCTGTATGACTCTTTGGGTATGTGATGATTTGCTTTGA
GGAGAATCTATGACTGGGCTTCAGCACAAGAGTTCTTAATTTTCTGTTGATTGTCCATGTTATGTGCAGTAAGGCACCAA
CAACCTGAAATCCAACAAGCAACAGCTCCTGATAGCAGTCAAAATTCCCATAAAAGATATTGTGTGTACACTACATGCGT
CAGTTAGTCTTCCTCGGTGTACTACTGAT---CTCTCAGTTCAAAGTGTTGAAAAGCTTCGCAGGCTCTGTCAGTTTTGT
TCCTCACTCAAAATGTTGAAAAGC--------------------------------------------------------
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------------TTCGCAGGCTCTGTCAGTTTTGTTCCTCAC--------------------------------------
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-------------------------------------------------------------------------CCGCGTT
CGCCCCCGACGGTGATGGCATTGCTGGTGTGGTGCTGAAAGAGGCGACACGCGTCCTTGGGGACCGGCAGCGGGAACCGT
TCCGGCCATGGCCTGTCTGCTGGAATTTAGTTTATTTTGGGACAGCCCAATAACTATTTCAGAAATTCCTAAATAAATCC
TAGAGGCCCACTTAACCCATTTGTGCAAGGCAAGGGATAGTATTAATGTTTAGTACCACATTGCTAGTTGAGTGGGAGTT
GGACCTCCTTATAAGGGAGGCTCTTTCCCCACTTGTATGAGCATGAGAACAAGAGGGACATCCACGCGCGCTACTCCTCC
GCCGCCGCGCCGCGGGTTGCGGGAATGAGCCGAGCCGATGTCTAAATTT
>chr7A_139
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----------------------------------------------------------CCAGCCTAACTTCGCTTTCCGG
CCCACTAGTTCCTGCTCGGCCCAGGCCAGCCGCTCCTCTCCTC--CTCACCTCTCCAGCGCGTGCTGCCCTAACTGACGC
CGTGGAAGTGCGCGCCGCCGCCCGCTCTCTCCCCGGTCG------CGCCGCCGCCGCCTCTCCGCAGCCCGAGCGTAAGA
TCTCAATCAACCTCTCTTCCTATGTCATCCTACTCCACCTCT------TGCAGCGTCCGTTGCTTGCGGCATCGCTGCAT
CTGAC--------------------GGGGGCTCTCATCTGTGTGTTGGATCCATGTATAAATTGGTCAGGCGAGCTGCAA
AATTCTGTAATCATAGACTGCGGCATATGT--TTTTTTGTGTGTGTTTGGTTCTGTATGCAAGCATTTTTTAGCTCTGTA
GAAAGGATTTGGTCACTCTGTGTTCTGTAAGGGGTAGCTGTGTTGGTACAAATGTGCAAGTGCAATATCAACAGCTAGCC
AGATTCTGATCCCCATCAGTACTTCTTTCACTCCAGTATTTGTTTCATCCTCAATTCTCCCTAGATTGCGTCTCTGGAAG
GCAGCGGAACAATCTTCCGCTGCAGAGTTCATTATTAGTTTCAGGACTCCACAAAAA--AAAAGCTTCAGAACTGCCTCT
AATTGCCATGCTAGGATGATAACCAGCAGCATTTTGCTTTGCACCGGTGAACAGTTTACAGACCATTCCCTGAATGAATG
CTCCATCCTAATGAAATTGTGGAATCGGCATTTTCTGAATACGCCGTACAACTGAAACTGTGGAACCGGTGTCAACCTTT
CCTTACCTCTGCTACCATGTTTATTCTCAGGTTAATAATCCCTGGACGATGGAGATGAATGCTGCAACAAGTCTAGAACC
TAGAGCAAAGGCTACCCTGGTTCTCGGAGGGGAATCGTTCGCAGTCAGCTCCGAGTCCGGCACCCTGTCGGAGCAGCTGG
CGGCGATGAGGGAGAAGAGCATGGTGATCCTCAAGGAGTACATCACCAAGCACAACGTCCCGAACGATGTCCCTGATGAA
TCCATTGAGGGCCCATCGGATGAGGAGGGCGAGGCACTTGCTAAAAACCCGCCCAAGAAATCAAAGAAGCAGAAGTGATT
GTCCTGAATCTCATCTGATTTATCGTGCCCTTTCTTAGTCCTCTCTTGCAAAGATCTGAGAACATGCTGTTACCCCTTGC
TAGCTGTTCCTTTGACACTGAACGACCAACAATTTATTCTTAGGCA------CACTAGCTGCTTGTGTATCAAATCGA--
--TGTGTGCAAGCGACGCTCAATGTTGTTATCTGATAATATGTGTGTGCAAGGAAAGTTTGCATCTTTCTTTCTGTACAA
CTCG-TTGTTAGAAGATGTTCTGCTTTTCGCTGGTAATATATGAGCTTCAGCACTAAAGTCCATTGCAGTTAAATCATTT
GTCAGATGTTTTGCTTTTGAGGATAATGAATGAGCTTCAGCACAAGTGAAATGATCATCCTAATCTGGTTTGACTTGGCA
CACACTTTCTTGGTACCCCAGCAAAGGTCAGAGAACATGCTGATCCCC--TTGCTAGCTGCTGTTCCTTTGACACGAAAA
GGTCAGAACTATTGTTAGCAGCAAA---TCTGCTTGTGTAGGAAATTGCTGCTGGTGCTTGTGCAAACGGTGCTCAATGT
TGTTGTCTAATATGATGGTAGGTGCAGGGGAATTCGCTCCTTTCTGTACGACTCTTTGGGTATGTGATGATTTGCTTTGA
GGAGAATATATGACTGGGCTTCAGCACATGAGTTCTTAATTTTCTGTTGCTTGTCCATGTTATGTGCAGTAAGGCGTCAA
CAACCTGAAATCCAACAAGCAACAGCTCCTGATAGCAGTCAAAATTCCCATAAAAGATATTGTGTGTACACTACATGCGT
CAGTTAGTCTTCCTCGGTGTACTACTGATGATCTCTCAGTTCAAAATGTTGAAAAGCTTCGCGGGCTCTGTCAGTTTTGT
TCCTCACTCA----------------------------------------------------------------------
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>chr7D_232
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-----------------------------------------------------------------------AAGTGACGC
CGTCGAAGCGCGCGCCGCCGCACGCTCTCTCCCCGGCCGAGCCTCCGCCGCCGCCGCCTCTCCACAGCCCACGCGTAAGA
TCTCAGTCAACCTCTCTTCCTAGCTCCCCCCGGGCCCCCCT-------------ATCCGTTGCTTGCGGCATCGCCGCAC
CGTAGGCAGGTAGGATCTGTCTGATGGGGGCTCTCATCTGTGTGTTCCATCCATGTATAAATTGGTCTGGAGAGCTGCAA
AATTCTGTAATCATAGACTGCGGCGTATGT--T---TTTTGTGTGTTTGGTTCTGTATGCAAGCATTTTTGAGCTGTGTA
GAAAGAATTTGGTTGCAGTGTGTTCTGTAAGGGGGTAGCTGCAA------------------------------------
-----CTAATCCCCATCAGTACTTCATTCACACCGGCATTTGTTTCATCATCAGTTTTCG-TAGATTGTGTCTCTGGAAG
GCAGCGGAACGATCTTCTGCTGCAGAGTCCATTATTAGTTTCAGAACTCAACTAAAAACAAAAGCTTCAGAACTGCCTCT
AATTGCCATGATAGGAT---AACCAGCAGCATTTTGCTTTGCACCAGTGAACAGTTTACAGATCATTCCCTGAATGAATA
CTCCATGCTAATGAAATTGTCGAATCGACGTTTTCTGAATACGCCGTACAACTGAAACTGTGGAACCGGTGTCACCCTTT
CCTTACCTCTGCTACCATGTTTATTCTCAGGTTAATAATCCCTGGACGATGGAGATGAATGCTGCGACAAGTCTAGAACC
TAGAGCAAAGGCCACCCTGGTTCTCGGAGGGGAATCGTTCACAGTCAGCTCCGAGTCGGGTGCCCTGTCGGAGCAGCTGG
CGGCGATGAGGGAGAAGAGCATGGTGATCCTCAAGGAGTACATCACCAAGCACAACGTCCCAAACGATGTCCCTGATGAA
TCCATCGAGGGCCCATCGGATGAGGAGGGTGAGGCACTTGCTAAAAACCCGCCCAAGAAATCAAAGAAGCAGAAGTGATT
GTCCTAAATCTCATCTGATTTATCGTGTTCTTTCTTAGGCCCCTCTTGCAAAGATCCGAGAACATGCTGTTACCCCTTGC
TAGCTGTTCCGTTGACACAGAAAAAC---CAAATTATTCTTATGCGCCCCTGCACTAGCTGCTTGTGTAACAAACAAATC
GCTGTGTGCAAGCGATGCTCAATGTTGTTATCCGATAATATGTGTGTGCAAGGAAAGTTTGCATCTTTCTTTCTGTACAA
CTCGTTTGTTAGAAGATGTTCTGCTTTTCGCTGGCAATATATGAGCTTCAGCACAAAAGTTCGTTGCAGTTAAATAATTT
TTCAGATGTTTTGCTTTTGAGGATAATGAATGAGCTTCAGCACAAGTGAAATGATCATCCCAATCTGGTTTGACTTGTCA
CACACTTTCTTGGTACCCCAGCAAAGGTCAGAGAACATGCTGTTGCCCC-TTGCTAGCTGCTGTTTCTTTGACACGAAAA
GGTCAGAACTATTGTTAGCAGCAAAAAATCTGCTTGTGTAGGAAATTGCTGCTGAACA----------------------
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-------------------------TGATGATCTCTCAGTTCAAAATGTTGAAAAGCTTGGCGGGCTCTGTCAGTTTTGT
TCCTCACTCACTTGGAGATGGCACAAGTCCAAAGATCAAATTATTATTATGAGCTGCAGTTGCGAGAAATCGCTTCTGGT
GCATGTGCAAGCCATGCTCAATGTTTTCCCTTGATATGTGAAGGGTAAGTTTGGGAGAAGTGCAGCACTGGACGCAGCGG
CATCTGATCCCACGCCATCGACGGCGCGGGGTCCTTTGTGATTCGGATCAGAGTAGGCTGCTAATTAGAGTATATGGGTG
TCAGACATTGTTTTGTAGCGTATATATATGTATTATAGGCAGTACAACCTGACACAAAAGCAAGTGCATGCTGCAAATGT
CAGTATGGAGCTTGCCCCAGGCGTGGGCCTTCGTGATTCTGGCAGTATGAACGCAGATACCATTGTTGTGTGCCATTGCG
ATAGTGTATGACGTAATTTCATTTTACCAGCTCTATAGAAGAGCACGCACCAGTACAACTTTGTGCTCCCTGGCATCCAT
TTCTACAAGTGCCCGAATCAATCAGCAAGTAACTAGCTTGTTGATTTAACATGCACATGTCATTTTCGTTTGGGACCATG
TGATTTTTGGCTTTGGGAGGCTCGGTACGCGTTCTTCATCACAGGAGTGGACATCAATCTGCTAATCCAAACCGCTGGGG
GCGGCAACAATGTCAGGTTCAGGATGGCGGAAGCACTGCAGGACGTACACGGGCACGCAGCGAACCTAAGAACACACAAA
TGCTATGCGTGTTCATGCTCGTCGTGGTACTCGTGCAAGCCGCGCGTCTGACCGCTACTGAATAAAATTAGAGATCTGCC
ATGTAAGAACTACTCCGTATTAATTTAACATGAAGCCTAGATTTTCCGTTAGCAGTACACCGATGTACTAAGCATGAGTG
TGATGGCGACCTGACAAGCGCGTACGAGGCAACCTTTTTGTGGACCTGCTTCGTCTGCCAAGTCAGATACCCTGCAGACC
TATGACTGGTATTTTACTCGTAATGCCAATTAACGCCCGACCATGCGCAGATTGCTGGGAGAAAAGCGTGTGGTCAGATT
GCAGCGTCCAGATGCCGGACGTCCACTCTCGTAAGATTGGCCCTTTCTATGACTCAACTCGACAAATTTAGTGCAAGCCA
CTCTTCAGTTAGGTGTTTTTCTTTGTTCTTATGAAGGCATCATATCAACAAGTTTGTAATGATATTCAGGTTGCAGAGAT
CAGGCGGGGTCAGGCCCCGAGGACGAACAACATCGGGCTCCAACAGCACAAGAAGCAGAGGTGCCAACACCCGATCTGTA
AAACCTCTTTGATTGTAACATACTAGTTGGGATGGAATTTAATGAAGTATGCTTCTGATCTCATTGATCATTTTGGCCAG
CTGGTCTCTCTCTGCTCGGATCTTTCCAAGCTTTTGCCTTAGCTCAAGTTTCTCGGCCCTTTCGTCTGACAGCTGCTCTT
CAAGTCGGGCCACCTTAGCAAGGGTGGTTTCGCCCTTCCTCGCCTTCTCCTCCTCGGTGTTCACCCAGTGTGACGCATCA
TCACTAAGATTGCTATCATCTTGCAACCGCACAAAAAGGGATGTTGTTAGCTTCCTGCCTTCCTTTGTAAAAGGAAAACG
CATTTAAGACTTGAATCTGACTTGAATGTTTGTAATAGAATCAATCAGCCTATCATGTAAACTAACAAGAAGCATGCATA
TAGGAAATGTCGGGTCACCGACAGAGCACGGATGCCCTCATAGTACTAACTGTACAACTGACTAGATGGTTGACATGAGG
AAACAAAAGTGTTTGATGGCTGTCATAGGCTCATTGCTAATTAATAATAGCATCTGTTTCTTAGATGGATCAACACAGGG
TACTAAATAATTCTGAAACAACCAGATGAAAGTGTAAGATAATACATCTAATTCATATCCTGAGAACAAAAGTCGATGTT
TCAGATAATGACATGGTAGTGGCACAATATGCAAGCGACGACACGTCGTCGCTTCTTCTAGCTGGGATCCTGTACATTGC
CTGGAATCTGTTGTTCCTCATGTCAACAGCAAGGAGCCATGCCTTGGGGTGCATGAACTTGAGCCTGGTGATCAGGTAAA
CAACGCCATTATCATCCATGCTGGGAACGGGCTGACATGTGTAGGTATTCTCCAGCCATGGGATTCCGCAGCGCCGCAAT
CCGGACCGCGCGGTTTCGCATATCTCAATGTCAGAAGCCCTGACGGCGTAGTCGGTGACCCAATCGCACCATGAACCGGT
GATGTTGCCATTCTTGCAGCTCTTGGTGTACGTGGTGAGTGTCCAGTCATGGATGCTGAAGTTTGGGGCCCCGGTTTCGG
GGTCGTTTTAAGGGAGCCGGTCGCCGTCGATGTCCAGCTCTACCACCTTGAGGAGGGAGCCCTCGACGACGGCGATGCCC
TAGAAAGGCTTGGGGCAGCACTCGATGCCCGCCTCGCCGTTCTCTAGTCTGCATGCCCGCACCGGCGGCATCGGCACGTC
CCGGAGGTTGTGGTTGTCGGTGAGCAGGTCGCAGAGCAGGATGCCGCGCCAGAGGTCGACGAAGCCGACCGTGCCGCGTT
CGCCCCCGACGGTGATGGCGTTGCTGGTGTGGTGCTGAAAGAGGCGACATGCGTCCTTGGGGACCGGCAGCGGGAAAGGC
TCCGGCCATGGCCTGTC---------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
------------S------------------S---S-------SS-----------------------------------
----------------------S--------------------S------------------------------------
---------------------S---------S---------SSSSSSS---S----------------S-----------
------S---S-------------SS-------------------------------------------S------S---
------------------------------SS------------------------------------------------
-------------------S---------------------------------------SS------------S------
----------------S---S---S------------------------------S----------------S-------
------S-------S----S-----------------------------S------------S-----------------
--------------------------------------------------------------------S-----------
-----------------------------------------------------------S--------------------
------S-----------------------------------------S-----------SS------------------
S-----------------------------------S--------------------------------S----------
----------------------------------------------------------------S---------------
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-------------------S-----------------------------S------------------------------
--------S-----------------------------------------------S--------S--------------
--------S--------S-----------S------------------S-------------------------------
-------S--------------------S--------------------S-------------------------SS---
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---------------------------------------------S----------------S-----------------
----------SSSS-SSSSSSSS---------------------------------------------------------
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--------------S-S------S--SS-SS--S---S------------------------------------------
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-------------------S-----------------------------S--------------------------SS-S
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_352
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------------TCTCTTCCTGGCTCCTCCTC------------------------------------------------
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>reverse_5067
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--------------------------GAGCCGAGCCGATGTCTAAA---
