Multiple sequence alignment - TraesCS7B01G337300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G337300 chr7B 100.000 3294 0 0 1 3294 592343645 592346938 0.000000e+00 6083.0
1 TraesCS7B01G337300 chr7B 96.149 1688 47 7 867 2537 591954883 591953197 0.000000e+00 2741.0
2 TraesCS7B01G337300 chr7B 92.647 340 25 0 2955 3294 700280569 700280908 1.060000e-134 490.0
3 TraesCS7B01G337300 chr7B 92.140 229 11 5 2730 2954 591951410 591951185 1.910000e-82 316.0
4 TraesCS7B01G337300 chr7A 91.685 2285 146 22 408 2661 632547077 632549348 0.000000e+00 3127.0
5 TraesCS7B01G337300 chr7A 90.725 345 30 2 2952 3294 218188622 218188278 3.000000e-125 459.0
6 TraesCS7B01G337300 chr7A 92.657 286 20 1 1 285 632546697 632546982 8.510000e-111 411.0
7 TraesCS7B01G337300 chr7A 87.302 126 15 1 279 404 632546919 632547043 3.430000e-30 143.0
8 TraesCS7B01G337300 chr7A 84.677 124 7 6 2837 2948 632545306 632545429 2.690000e-21 113.0
9 TraesCS7B01G337300 chr7D 91.619 2267 143 23 408 2647 548772355 548774601 0.000000e+00 3090.0
10 TraesCS7B01G337300 chr7D 91.765 340 28 0 2955 3294 392752899 392753238 1.070000e-129 473.0
11 TraesCS7B01G337300 chr7D 89.862 217 18 3 72 285 548772045 548772260 3.240000e-70 276.0
12 TraesCS7B01G337300 chr7D 91.667 132 11 0 273 404 548772190 548772321 2.020000e-42 183.0
13 TraesCS7B01G337300 chr7D 91.463 82 5 2 2868 2948 548770558 548770638 9.660000e-21 111.0
14 TraesCS7B01G337300 chr7D 88.312 77 9 0 1 77 548771948 548772024 3.500000e-15 93.5
15 TraesCS7B01G337300 chr7D 98.000 50 1 0 2786 2835 548779989 548780038 1.630000e-13 87.9
16 TraesCS7B01G337300 chr4A 80.373 1019 124 42 1353 2337 211002256 211001280 0.000000e+00 704.0
17 TraesCS7B01G337300 chr4A 90.230 348 33 1 2947 3294 373644148 373644494 1.390000e-123 453.0
18 TraesCS7B01G337300 chr4A 81.527 406 46 16 950 1331 211003016 211002616 1.150000e-79 307.0
19 TraesCS7B01G337300 chrUn 94.118 340 20 0 2955 3294 52109560 52109899 4.870000e-143 518.0
20 TraesCS7B01G337300 chrUn 91.919 99 6 2 2637 2733 29813953 29814051 1.590000e-28 137.0
21 TraesCS7B01G337300 chr2B 92.059 340 27 0 2955 3294 198012360 198012699 2.300000e-131 479.0
22 TraesCS7B01G337300 chr2B 90.909 77 5 2 1 77 655987509 655987583 5.820000e-18 102.0
23 TraesCS7B01G337300 chr5D 91.789 341 28 0 2954 3294 513925720 513925380 2.970000e-130 475.0
24 TraesCS7B01G337300 chr1D 91.765 340 28 0 2955 3294 403547725 403547386 1.070000e-129 473.0
25 TraesCS7B01G337300 chr1D 85.593 118 14 2 2639 2756 64145532 64145418 1.610000e-23 121.0
26 TraesCS7B01G337300 chr3B 90.909 341 31 0 2954 3294 661859529 661859189 3.000000e-125 459.0
27 TraesCS7B01G337300 chr4D 82.890 526 57 12 1748 2266 291735189 291735688 3.020000e-120 442.0
28 TraesCS7B01G337300 chr4D 75.182 548 46 33 788 1299 291734527 291735020 3.380000e-40 176.0
29 TraesCS7B01G337300 chr4D 83.158 95 11 4 659 748 291734433 291734527 7.580000e-12 82.4
30 TraesCS7B01G337300 chr4B 87.558 217 26 1 2046 2261 273689877 273689661 1.960000e-62 250.0
31 TraesCS7B01G337300 chr4B 92.157 51 4 0 698 748 273696183 273696133 4.560000e-09 73.1
32 TraesCS7B01G337300 chr6D 90.654 107 9 1 2636 2741 380137077 380136971 1.230000e-29 141.0
33 TraesCS7B01G337300 chr6A 96.471 85 3 0 2649 2733 93285704 93285788 1.230000e-29 141.0
34 TraesCS7B01G337300 chr1B 94.382 89 5 0 2646 2734 151363744 151363656 1.590000e-28 137.0
35 TraesCS7B01G337300 chr1A 92.784 97 3 4 2640 2734 481241384 481241290 1.590000e-28 137.0
36 TraesCS7B01G337300 chr3A 91.089 101 8 1 2635 2735 737369163 737369262 5.730000e-28 135.0
37 TraesCS7B01G337300 chr2D 93.407 91 6 0 2646 2736 589522340 589522250 5.730000e-28 135.0
38 TraesCS7B01G337300 chr2D 90.291 103 8 2 2631 2733 302247997 302248097 2.060000e-27 134.0
39 TraesCS7B01G337300 chr2D 90.141 71 5 2 1 71 549728890 549728958 1.260000e-14 91.6
40 TraesCS7B01G337300 chr2D 90.141 71 5 2 1 71 550227423 550227491 1.260000e-14 91.6
41 TraesCS7B01G337300 chr2A 90.909 77 5 2 1 77 691845609 691845683 5.820000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G337300 chr7B 592343645 592346938 3293 False 6083.000000 6083 100.00000 1 3294 1 chr7B.!!$F1 3293
1 TraesCS7B01G337300 chr7B 591951185 591954883 3698 True 1528.500000 2741 94.14450 867 2954 2 chr7B.!!$R1 2087
2 TraesCS7B01G337300 chr7A 632545306 632549348 4042 False 948.500000 3127 89.08025 1 2948 4 chr7A.!!$F1 2947
3 TraesCS7B01G337300 chr7D 548770558 548774601 4043 False 750.700000 3090 90.58460 1 2948 5 chr7D.!!$F3 2947
4 TraesCS7B01G337300 chr4A 211001280 211003016 1736 True 505.500000 704 80.95000 950 2337 2 chr4A.!!$R1 1387
5 TraesCS7B01G337300 chr4D 291734433 291735688 1255 False 233.466667 442 80.41000 659 2266 3 chr4D.!!$F1 1607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 2109 0.104855 GTGACCCGCAGATGCTCATA 59.895 55.0 2.95 0.0 39.32 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2479 4511 0.377203 GCCAATTTCTTACGCTCCGG 59.623 55.0 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 1524 0.179936 CTGGAGCACCCCATCTCTTC 59.820 60.000 0.00 0.00 35.33 2.87
48 1531 2.659428 CACCCCATCTCTTCCATTTCC 58.341 52.381 0.00 0.00 0.00 3.13
51 1534 2.486191 CCCCATCTCTTCCATTTCCTCG 60.486 54.545 0.00 0.00 0.00 4.63
89 1598 0.315869 CGCCTATTTTAAGCACGCCG 60.316 55.000 0.00 0.00 0.00 6.46
122 1631 6.646267 AGTGGCGGTGATTAATTTAGACTTA 58.354 36.000 0.00 0.00 0.00 2.24
152 1661 4.142447 TGAGATAGTTAAGCTCGCTTTCGT 60.142 41.667 9.68 0.00 37.47 3.85
170 1679 1.475682 CGTTAACCGCTCCCTTCTACT 59.524 52.381 0.00 0.00 0.00 2.57
187 1696 2.386661 ACTACCTCGCAAGACCATTG 57.613 50.000 0.00 0.00 45.01 2.82
218 1727 1.268352 TGAACCGTACAAGCATTTGCC 59.732 47.619 0.00 0.00 43.38 4.52
254 1765 1.911057 AGGAAAGGTGGCAGTTTAGC 58.089 50.000 0.00 0.00 0.00 3.09
262 1773 4.079446 GCAGTTTAGCCACAGCCA 57.921 55.556 0.00 0.00 41.25 4.75
265 1776 0.877071 CAGTTTAGCCACAGCCACAG 59.123 55.000 0.00 0.00 41.25 3.66
266 1777 0.890996 AGTTTAGCCACAGCCACAGC 60.891 55.000 0.00 0.00 41.25 4.40
286 1797 3.578688 GCTTGAAGCTTAACCACAATGG 58.421 45.455 10.44 0.00 40.10 3.16
287 1798 3.255642 GCTTGAAGCTTAACCACAATGGA 59.744 43.478 10.44 0.00 37.80 3.41
288 1799 4.261994 GCTTGAAGCTTAACCACAATGGAA 60.262 41.667 10.44 0.00 37.80 3.53
289 1800 5.738783 GCTTGAAGCTTAACCACAATGGAAA 60.739 40.000 10.44 0.00 37.80 3.13
290 1801 5.860941 TGAAGCTTAACCACAATGGAAAA 57.139 34.783 0.00 0.00 40.96 2.29
291 1802 6.227298 TGAAGCTTAACCACAATGGAAAAA 57.773 33.333 0.00 0.00 40.96 1.94
312 1823 3.351794 AAGGGAAGGTAGCAGTTTAGC 57.648 47.619 0.00 0.00 0.00 3.09
313 1824 1.560146 AGGGAAGGTAGCAGTTTAGCC 59.440 52.381 0.00 0.00 34.23 3.93
314 1825 1.280998 GGGAAGGTAGCAGTTTAGCCA 59.719 52.381 0.00 0.00 34.23 4.75
315 1826 2.357075 GGAAGGTAGCAGTTTAGCCAC 58.643 52.381 0.00 0.00 34.23 5.01
316 1827 2.357075 GAAGGTAGCAGTTTAGCCACC 58.643 52.381 0.00 0.00 45.12 4.61
318 1829 2.025589 GGTAGCAGTTTAGCCACCTC 57.974 55.000 0.00 0.00 42.11 3.85
319 1830 1.407025 GGTAGCAGTTTAGCCACCTCC 60.407 57.143 0.00 0.00 42.11 4.30
320 1831 1.555533 GTAGCAGTTTAGCCACCTCCT 59.444 52.381 0.00 0.00 34.23 3.69
321 1832 1.068121 AGCAGTTTAGCCACCTCCTT 58.932 50.000 0.00 0.00 34.23 3.36
322 1833 1.168714 GCAGTTTAGCCACCTCCTTG 58.831 55.000 0.00 0.00 0.00 3.61
404 1915 0.107945 CAGTCAGGAAGGGTAGCTGC 60.108 60.000 0.00 0.00 0.00 5.25
405 1916 0.545309 AGTCAGGAAGGGTAGCTGCA 60.545 55.000 3.61 0.00 0.00 4.41
406 1917 0.324943 GTCAGGAAGGGTAGCTGCAA 59.675 55.000 3.61 0.00 0.00 4.08
419 1960 4.201990 GGTAGCTGCAATGAAGATTTCCAG 60.202 45.833 3.61 0.00 0.00 3.86
498 2039 1.064017 ACACCCTGACAACAACCACAT 60.064 47.619 0.00 0.00 0.00 3.21
506 2047 3.242903 TGACAACAACCACATTAACTGCG 60.243 43.478 0.00 0.00 0.00 5.18
518 2059 6.348622 CCACATTAACTGCGGTGTATAAACAA 60.349 38.462 0.00 0.00 37.36 2.83
519 2060 6.521821 CACATTAACTGCGGTGTATAAACAAC 59.478 38.462 0.00 0.00 40.14 3.32
520 2061 6.205076 ACATTAACTGCGGTGTATAAACAACA 59.795 34.615 0.00 0.00 44.03 3.33
521 2062 6.804770 TTAACTGCGGTGTATAAACAACAT 57.195 33.333 0.00 0.00 44.03 2.71
522 2063 4.678509 ACTGCGGTGTATAAACAACATG 57.321 40.909 0.00 0.00 44.03 3.21
523 2064 4.069304 ACTGCGGTGTATAAACAACATGT 58.931 39.130 0.00 0.00 44.03 3.21
535 2076 7.984422 ATAAACAACATGTCATCAGTGAAGA 57.016 32.000 0.00 0.00 35.80 2.87
544 2085 7.654520 ACATGTCATCAGTGAAGAAAATTTTGG 59.345 33.333 8.47 0.00 35.80 3.28
547 2088 4.909696 TCAGTGAAGAAAATTTTGGCGA 57.090 36.364 8.47 0.00 0.00 5.54
562 2103 3.786101 CGAAGTGACCCGCAGATG 58.214 61.111 0.00 0.00 0.00 2.90
567 2108 1.153289 GTGACCCGCAGATGCTCAT 60.153 57.895 2.95 0.00 39.32 2.90
568 2109 0.104855 GTGACCCGCAGATGCTCATA 59.895 55.000 2.95 0.00 39.32 2.15
593 2134 5.452496 TCTGACCTAGAAATAGCATCTGTGC 60.452 44.000 0.00 0.00 41.28 4.57
601 2142 4.565360 GCATCTGTGCCCTGCATA 57.435 55.556 0.00 0.00 45.76 3.14
602 2143 2.328235 GCATCTGTGCCCTGCATAG 58.672 57.895 6.50 6.50 46.57 2.23
615 2157 2.771943 CCTGCATAGTCCAGGGTTTCTA 59.228 50.000 0.00 0.00 44.87 2.10
630 2172 7.092716 CAGGGTTTCTATGAATTTGGAAGTTG 58.907 38.462 0.00 0.00 0.00 3.16
631 2173 5.869344 GGGTTTCTATGAATTTGGAAGTTGC 59.131 40.000 0.00 0.00 0.00 4.17
637 2179 6.945435 TCTATGAATTTGGAAGTTGCCACTTA 59.055 34.615 2.67 0.00 43.79 2.24
642 2184 1.168714 GGAAGTTGCCACTTAGCAGG 58.831 55.000 2.67 0.00 43.79 4.85
652 2194 2.094675 CACTTAGCAGGTTTCCATGGG 58.905 52.381 13.02 0.00 0.00 4.00
653 2195 1.710809 ACTTAGCAGGTTTCCATGGGT 59.289 47.619 13.02 0.00 0.00 4.51
654 2196 2.094675 CTTAGCAGGTTTCCATGGGTG 58.905 52.381 13.02 3.40 0.00 4.61
655 2197 1.367346 TAGCAGGTTTCCATGGGTGA 58.633 50.000 13.02 0.00 0.00 4.02
656 2198 0.706433 AGCAGGTTTCCATGGGTGAT 59.294 50.000 13.02 0.00 0.00 3.06
657 2199 1.922447 AGCAGGTTTCCATGGGTGATA 59.078 47.619 13.02 0.00 0.00 2.15
687 2229 5.884792 ACAGAGATAGGCTGAAGAAAATTGG 59.115 40.000 0.00 0.00 36.86 3.16
690 2232 5.444176 AGATAGGCTGAAGAAAATTGGGAG 58.556 41.667 0.00 0.00 0.00 4.30
737 2285 2.042464 AGTGAAGCACCTGAACTCTCA 58.958 47.619 0.00 0.00 34.49 3.27
763 2316 1.098869 TGATCTGTCTGCGAGTCTCC 58.901 55.000 0.00 0.00 0.00 3.71
776 2329 0.610687 AGTCTCCCTTCTTGGCTTCG 59.389 55.000 0.00 0.00 0.00 3.79
842 2401 1.476235 TTCTCGCACACAACGTCACG 61.476 55.000 0.00 0.00 0.00 4.35
863 2423 0.532573 CGCAGAAGGAGGTAAGCTCA 59.467 55.000 0.00 0.00 0.00 4.26
1027 2615 1.901591 ACCTTGTGTGAAGATGGCAG 58.098 50.000 0.00 0.00 0.00 4.85
1160 2784 1.528309 CGGTGGCAGTGGAAACCTT 60.528 57.895 0.00 0.00 0.00 3.50
1331 2955 2.279517 GATCGCGCCGAACCTGAT 60.280 61.111 0.00 0.00 39.99 2.90
1344 2968 2.615465 CCTGATGTTGGGAGGGCCA 61.615 63.158 6.18 0.00 35.15 5.36
1377 3339 1.755179 CCATGAAAGCCAACCTCGAT 58.245 50.000 0.00 0.00 0.00 3.59
1506 3492 6.057533 TGCAATACACTTGGATTGGATAGAG 58.942 40.000 14.70 0.00 34.29 2.43
2427 4441 6.093357 GGCTTCTGAGGTCTTAGAAATTGAAG 59.907 42.308 6.65 0.00 35.26 3.02
2446 4477 4.047059 GTTGCGCAGGCTGCACAT 62.047 61.111 35.94 0.00 45.36 3.21
2448 4479 1.970640 TTGCGCAGGCTGCACATTA 60.971 52.632 35.94 18.06 45.36 1.90
2454 4486 2.671914 CGCAGGCTGCACATTATTTGTT 60.672 45.455 35.94 0.00 45.36 2.83
2460 4492 4.089923 GGCTGCACATTATTTGTTCGAAAC 59.910 41.667 0.00 0.00 36.00 2.78
2466 4498 7.651304 TGCACATTATTTGTTCGAAACTGAATT 59.349 29.630 0.00 0.00 36.00 2.17
2479 4511 5.555069 CGAAACTGAATTGCAAAACAGAAGC 60.555 40.000 29.57 19.93 37.59 3.86
2480 4512 3.721035 ACTGAATTGCAAAACAGAAGCC 58.279 40.909 29.57 5.68 37.59 4.35
2482 4514 2.061028 GAATTGCAAAACAGAAGCCGG 58.939 47.619 1.71 0.00 0.00 6.13
2540 6298 3.802139 CGGCAGAACGTACATTCATATGT 59.198 43.478 4.28 0.00 46.49 2.29
2563 6321 8.574251 TGTTATGGATTTTGCTAAGTACATGT 57.426 30.769 10.61 2.69 28.53 3.21
2564 6322 9.019656 TGTTATGGATTTTGCTAAGTACATGTT 57.980 29.630 2.30 0.00 28.53 2.71
2587 6363 2.235650 TGCAAGATCAGGAAGTCTGGAG 59.764 50.000 0.00 0.00 43.53 3.86
2589 6365 3.055530 GCAAGATCAGGAAGTCTGGAGAA 60.056 47.826 0.00 0.00 43.53 2.87
2593 6369 7.334090 CAAGATCAGGAAGTCTGGAGAATTTA 58.666 38.462 0.00 0.00 43.53 1.40
2599 6375 6.478344 CAGGAAGTCTGGAGAATTTAATCGAG 59.522 42.308 0.00 0.00 39.76 4.04
2600 6376 5.755861 GGAAGTCTGGAGAATTTAATCGAGG 59.244 44.000 0.00 0.00 32.01 4.63
2660 6436 9.271921 TCATATTATACTAGTACTCCCTCCGTA 57.728 37.037 4.31 0.00 0.00 4.02
2661 6437 9.896645 CATATTATACTAGTACTCCCTCCGTAA 57.103 37.037 4.31 0.00 0.00 3.18
2663 6439 8.860780 ATTATACTAGTACTCCCTCCGTAAAG 57.139 38.462 4.31 0.00 0.00 1.85
2665 6441 5.184892 ACTAGTACTCCCTCCGTAAAGAA 57.815 43.478 0.00 0.00 0.00 2.52
2666 6442 5.574188 ACTAGTACTCCCTCCGTAAAGAAA 58.426 41.667 0.00 0.00 0.00 2.52
2667 6443 6.193504 ACTAGTACTCCCTCCGTAAAGAAAT 58.806 40.000 0.00 0.00 0.00 2.17
2668 6444 7.349598 ACTAGTACTCCCTCCGTAAAGAAATA 58.650 38.462 0.00 0.00 0.00 1.40
2669 6445 8.003629 ACTAGTACTCCCTCCGTAAAGAAATAT 58.996 37.037 0.00 0.00 0.00 1.28
2670 6446 7.672122 AGTACTCCCTCCGTAAAGAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
2671 6447 8.773033 AGTACTCCCTCCGTAAAGAAATATTA 57.227 34.615 0.00 0.00 0.00 0.98
2672 6448 8.858094 AGTACTCCCTCCGTAAAGAAATATTAG 58.142 37.037 0.00 0.00 0.00 1.73
2673 6449 7.909485 ACTCCCTCCGTAAAGAAATATTAGA 57.091 36.000 0.00 0.00 0.00 2.10
2674 6450 7.953752 ACTCCCTCCGTAAAGAAATATTAGAG 58.046 38.462 0.00 0.00 0.00 2.43
2675 6451 6.756221 TCCCTCCGTAAAGAAATATTAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
2676 6452 5.634020 CCCTCCGTAAAGAAATATTAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
2677 6453 6.214399 CCTCCGTAAAGAAATATTAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
2678 6454 6.700520 CCTCCGTAAAGAAATATTAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
2679 6455 7.224167 CCTCCGTAAAGAAATATTAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
2680 6456 9.241317 CTCCGTAAAGAAATATTAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
2681 6457 9.241317 TCCGTAAAGAAATATTAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
2682 6458 9.241317 CCGTAAAGAAATATTAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
2696 6472 8.635877 AGAGCGTTTAGATCACTATTTTACTG 57.364 34.615 0.00 0.00 37.82 2.74
2697 6473 8.467598 AGAGCGTTTAGATCACTATTTTACTGA 58.532 33.333 0.00 0.00 37.82 3.41
2698 6474 9.250624 GAGCGTTTAGATCACTATTTTACTGAT 57.749 33.333 0.00 0.00 34.89 2.90
2699 6475 9.250624 AGCGTTTAGATCACTATTTTACTGATC 57.749 33.333 0.00 0.00 40.40 2.92
2747 6523 7.147811 ACAGAGAGAGTAGTAAAATTAGGGCTG 60.148 40.741 0.00 0.00 0.00 4.85
2770 6546 4.330074 GCATCATCGGTATAATTCCTTCCG 59.670 45.833 0.00 0.00 42.12 4.30
2825 6601 9.774742 GTAACAGATAACCAAAGCAGAATTTAG 57.225 33.333 0.00 0.00 0.00 1.85
2830 6606 5.488262 AACCAAAGCAGAATTTAGGCAAT 57.512 34.783 0.00 0.00 0.00 3.56
2864 6640 8.167392 TGAAAGGATTACTGAATTTGGAACCTA 58.833 33.333 0.00 0.00 0.00 3.08
2865 6641 8.581253 AAAGGATTACTGAATTTGGAACCTAG 57.419 34.615 0.00 0.00 0.00 3.02
2872 6648 7.793948 ACTGAATTTGGAACCTAGTACTACT 57.206 36.000 0.00 0.00 0.00 2.57
2874 6650 8.657712 ACTGAATTTGGAACCTAGTACTACTTT 58.342 33.333 0.00 0.00 0.00 2.66
2926 6703 4.878397 AGAAAATCCATTAGAGCTGAACCG 59.122 41.667 0.00 0.00 0.00 4.44
2930 6707 1.656652 CATTAGAGCTGAACCGTGGG 58.343 55.000 0.00 0.00 0.00 4.61
2968 6745 2.524569 CGGAGGGCAAAATTTTGTGT 57.475 45.000 27.13 14.86 40.24 3.72
2969 6746 2.832563 CGGAGGGCAAAATTTTGTGTT 58.167 42.857 27.13 15.21 40.24 3.32
2970 6747 3.202097 CGGAGGGCAAAATTTTGTGTTT 58.798 40.909 27.13 13.70 40.24 2.83
2971 6748 3.625313 CGGAGGGCAAAATTTTGTGTTTT 59.375 39.130 27.13 12.22 40.24 2.43
2972 6749 4.495514 CGGAGGGCAAAATTTTGTGTTTTG 60.496 41.667 27.13 13.13 45.01 2.44
2973 6750 4.637977 GGAGGGCAAAATTTTGTGTTTTGA 59.362 37.500 27.13 0.00 45.02 2.69
2976 6753 4.667262 GGCAAAATTTTGTGTTTTGACCC 58.333 39.130 27.13 15.12 44.81 4.46
2977 6754 4.397730 GGCAAAATTTTGTGTTTTGACCCT 59.602 37.500 27.13 0.00 44.81 4.34
2978 6755 5.105957 GGCAAAATTTTGTGTTTTGACCCTT 60.106 36.000 27.13 0.00 44.81 3.95
2979 6756 6.385843 GCAAAATTTTGTGTTTTGACCCTTT 58.614 32.000 27.13 0.00 45.02 3.11
2980 6757 6.865726 GCAAAATTTTGTGTTTTGACCCTTTT 59.134 30.769 27.13 0.00 45.02 2.27
2981 6758 7.061673 GCAAAATTTTGTGTTTTGACCCTTTTC 59.938 33.333 27.13 5.40 45.02 2.29
2982 6759 7.994425 AAATTTTGTGTTTTGACCCTTTTCT 57.006 28.000 0.00 0.00 0.00 2.52
2983 6760 6.983474 ATTTTGTGTTTTGACCCTTTTCTG 57.017 33.333 0.00 0.00 0.00 3.02
2984 6761 5.730296 TTTGTGTTTTGACCCTTTTCTGA 57.270 34.783 0.00 0.00 0.00 3.27
2985 6762 5.730296 TTGTGTTTTGACCCTTTTCTGAA 57.270 34.783 0.00 0.00 0.00 3.02
2986 6763 5.730296 TGTGTTTTGACCCTTTTCTGAAA 57.270 34.783 0.00 0.00 0.00 2.69
2987 6764 5.474825 TGTGTTTTGACCCTTTTCTGAAAC 58.525 37.500 1.58 0.00 0.00 2.78
2988 6765 4.868171 GTGTTTTGACCCTTTTCTGAAACC 59.132 41.667 1.58 0.00 0.00 3.27
2989 6766 4.775253 TGTTTTGACCCTTTTCTGAAACCT 59.225 37.500 1.58 0.00 0.00 3.50
2990 6767 5.952947 TGTTTTGACCCTTTTCTGAAACCTA 59.047 36.000 1.58 0.00 0.00 3.08
2991 6768 6.609616 TGTTTTGACCCTTTTCTGAAACCTAT 59.390 34.615 1.58 0.00 0.00 2.57
2992 6769 7.125053 TGTTTTGACCCTTTTCTGAAACCTATT 59.875 33.333 1.58 0.00 0.00 1.73
2993 6770 6.894339 TTGACCCTTTTCTGAAACCTATTC 57.106 37.500 1.58 0.00 0.00 1.75
2994 6771 5.001232 TGACCCTTTTCTGAAACCTATTCG 58.999 41.667 1.58 0.00 0.00 3.34
2995 6772 5.221762 TGACCCTTTTCTGAAACCTATTCGA 60.222 40.000 1.58 0.00 0.00 3.71
2996 6773 5.246307 ACCCTTTTCTGAAACCTATTCGAG 58.754 41.667 1.58 0.00 0.00 4.04
2997 6774 5.012768 ACCCTTTTCTGAAACCTATTCGAGA 59.987 40.000 1.58 0.00 0.00 4.04
2998 6775 6.116126 CCCTTTTCTGAAACCTATTCGAGAT 58.884 40.000 1.58 0.00 0.00 2.75
2999 6776 6.258947 CCCTTTTCTGAAACCTATTCGAGATC 59.741 42.308 1.58 0.00 0.00 2.75
3000 6777 7.044798 CCTTTTCTGAAACCTATTCGAGATCT 58.955 38.462 1.58 0.00 0.00 2.75
3001 6778 7.010923 CCTTTTCTGAAACCTATTCGAGATCTG 59.989 40.741 0.00 0.00 0.00 2.90
3002 6779 6.775594 TTCTGAAACCTATTCGAGATCTGA 57.224 37.500 0.00 0.00 0.00 3.27
3003 6780 6.137794 TCTGAAACCTATTCGAGATCTGAC 57.862 41.667 0.00 0.00 0.00 3.51
3004 6781 5.067936 TCTGAAACCTATTCGAGATCTGACC 59.932 44.000 0.00 0.00 0.00 4.02
3005 6782 4.099573 TGAAACCTATTCGAGATCTGACCC 59.900 45.833 0.00 0.00 0.00 4.46
3006 6783 3.603965 ACCTATTCGAGATCTGACCCT 57.396 47.619 0.00 0.00 0.00 4.34
3007 6784 4.726035 ACCTATTCGAGATCTGACCCTA 57.274 45.455 0.00 0.00 0.00 3.53
3008 6785 4.658063 ACCTATTCGAGATCTGACCCTAG 58.342 47.826 0.00 0.00 0.00 3.02
3009 6786 4.105057 ACCTATTCGAGATCTGACCCTAGT 59.895 45.833 0.00 0.00 0.00 2.57
3010 6787 5.074115 CCTATTCGAGATCTGACCCTAGTT 58.926 45.833 0.00 0.00 0.00 2.24
3011 6788 5.536916 CCTATTCGAGATCTGACCCTAGTTT 59.463 44.000 0.00 0.00 0.00 2.66
3012 6789 4.720649 TTCGAGATCTGACCCTAGTTTG 57.279 45.455 0.00 0.00 0.00 2.93
3013 6790 3.964411 TCGAGATCTGACCCTAGTTTGA 58.036 45.455 0.00 0.00 0.00 2.69
3014 6791 4.341487 TCGAGATCTGACCCTAGTTTGAA 58.659 43.478 0.00 0.00 0.00 2.69
3015 6792 4.770531 TCGAGATCTGACCCTAGTTTGAAA 59.229 41.667 0.00 0.00 0.00 2.69
3016 6793 5.245301 TCGAGATCTGACCCTAGTTTGAAAA 59.755 40.000 0.00 0.00 0.00 2.29
3017 6794 5.932303 CGAGATCTGACCCTAGTTTGAAAAA 59.068 40.000 0.00 0.00 0.00 1.94
3040 6817 6.710692 AAATTCGAGATTTGACCATTTTGC 57.289 33.333 5.23 0.00 0.00 3.68
3041 6818 5.649782 ATTCGAGATTTGACCATTTTGCT 57.350 34.783 0.00 0.00 0.00 3.91
3042 6819 6.757897 ATTCGAGATTTGACCATTTTGCTA 57.242 33.333 0.00 0.00 0.00 3.49
3043 6820 5.545658 TCGAGATTTGACCATTTTGCTAC 57.454 39.130 0.00 0.00 0.00 3.58
3044 6821 4.394920 TCGAGATTTGACCATTTTGCTACC 59.605 41.667 0.00 0.00 0.00 3.18
3045 6822 4.662145 GAGATTTGACCATTTTGCTACCG 58.338 43.478 0.00 0.00 0.00 4.02
3046 6823 2.715737 TTTGACCATTTTGCTACCGC 57.284 45.000 0.00 0.00 0.00 5.68
3047 6824 0.885196 TTGACCATTTTGCTACCGCC 59.115 50.000 0.00 0.00 34.43 6.13
3048 6825 0.250945 TGACCATTTTGCTACCGCCA 60.251 50.000 0.00 0.00 34.43 5.69
3049 6826 0.451783 GACCATTTTGCTACCGCCAG 59.548 55.000 0.00 0.00 34.43 4.85
3050 6827 0.037590 ACCATTTTGCTACCGCCAGA 59.962 50.000 0.00 0.00 34.43 3.86
3051 6828 0.734889 CCATTTTGCTACCGCCAGAG 59.265 55.000 0.00 0.00 34.43 3.35
3052 6829 1.453155 CATTTTGCTACCGCCAGAGT 58.547 50.000 0.00 0.00 34.43 3.24
3053 6830 2.627945 CATTTTGCTACCGCCAGAGTA 58.372 47.619 0.00 0.00 34.43 2.59
3054 6831 2.843401 TTTTGCTACCGCCAGAGTAA 57.157 45.000 0.00 0.00 34.43 2.24
3055 6832 2.843401 TTTGCTACCGCCAGAGTAAA 57.157 45.000 0.00 0.00 34.43 2.01
3056 6833 3.343941 TTTGCTACCGCCAGAGTAAAT 57.656 42.857 0.00 0.00 34.43 1.40
3057 6834 2.309528 TGCTACCGCCAGAGTAAATG 57.690 50.000 0.00 0.00 34.43 2.32
3058 6835 1.134521 TGCTACCGCCAGAGTAAATGG 60.135 52.381 0.00 0.00 41.04 3.16
3065 6842 2.240493 CCAGAGTAAATGGCGGTAGG 57.760 55.000 0.00 0.00 0.00 3.18
3066 6843 1.202651 CCAGAGTAAATGGCGGTAGGG 60.203 57.143 0.00 0.00 0.00 3.53
3067 6844 1.485066 CAGAGTAAATGGCGGTAGGGT 59.515 52.381 0.00 0.00 0.00 4.34
3068 6845 1.485066 AGAGTAAATGGCGGTAGGGTG 59.515 52.381 0.00 0.00 0.00 4.61
3069 6846 1.208776 GAGTAAATGGCGGTAGGGTGT 59.791 52.381 0.00 0.00 0.00 4.16
3070 6847 2.431782 GAGTAAATGGCGGTAGGGTGTA 59.568 50.000 0.00 0.00 0.00 2.90
3071 6848 2.839425 AGTAAATGGCGGTAGGGTGTAA 59.161 45.455 0.00 0.00 0.00 2.41
3072 6849 2.118313 AAATGGCGGTAGGGTGTAAC 57.882 50.000 0.00 0.00 0.00 2.50
3073 6850 0.985760 AATGGCGGTAGGGTGTAACA 59.014 50.000 0.00 0.00 39.98 2.41
3074 6851 0.539986 ATGGCGGTAGGGTGTAACAG 59.460 55.000 0.00 0.00 39.98 3.16
3075 6852 1.449070 GGCGGTAGGGTGTAACAGC 60.449 63.158 0.00 0.00 39.98 4.40
3076 6853 1.595357 GCGGTAGGGTGTAACAGCT 59.405 57.895 0.00 0.00 39.98 4.24
3077 6854 0.036671 GCGGTAGGGTGTAACAGCTT 60.037 55.000 0.00 0.00 39.98 3.74
3078 6855 1.205417 GCGGTAGGGTGTAACAGCTTA 59.795 52.381 0.00 0.00 39.98 3.09
3079 6856 2.884827 CGGTAGGGTGTAACAGCTTAC 58.115 52.381 0.00 0.00 41.47 2.34
3081 6858 2.884827 GTAGGGTGTAACAGCTTACCG 58.115 52.381 0.00 0.00 38.09 4.02
3082 6859 0.036671 AGGGTGTAACAGCTTACCGC 60.037 55.000 0.00 0.00 39.98 5.68
3083 6860 1.022982 GGGTGTAACAGCTTACCGCC 61.023 60.000 0.00 0.00 39.98 6.13
3084 6861 0.320946 GGTGTAACAGCTTACCGCCA 60.321 55.000 0.00 0.00 39.98 5.69
3085 6862 1.076332 GTGTAACAGCTTACCGCCAG 58.924 55.000 0.00 0.00 40.39 4.85
3086 6863 0.970640 TGTAACAGCTTACCGCCAGA 59.029 50.000 0.00 0.00 40.39 3.86
3087 6864 1.067142 TGTAACAGCTTACCGCCAGAG 60.067 52.381 0.00 0.00 40.39 3.35
3088 6865 1.203994 GTAACAGCTTACCGCCAGAGA 59.796 52.381 0.00 0.00 40.39 3.10
3089 6866 0.037232 AACAGCTTACCGCCAGAGAC 60.037 55.000 0.00 0.00 40.39 3.36
3090 6867 1.153549 CAGCTTACCGCCAGAGACC 60.154 63.158 0.00 0.00 40.39 3.85
3091 6868 1.305381 AGCTTACCGCCAGAGACCT 60.305 57.895 0.00 0.00 40.39 3.85
3092 6869 0.905337 AGCTTACCGCCAGAGACCTT 60.905 55.000 0.00 0.00 40.39 3.50
3093 6870 0.741221 GCTTACCGCCAGAGACCTTG 60.741 60.000 0.00 0.00 0.00 3.61
3094 6871 0.108138 CTTACCGCCAGAGACCTTGG 60.108 60.000 0.00 0.00 0.00 3.61
3095 6872 2.180159 TTACCGCCAGAGACCTTGGC 62.180 60.000 6.19 6.19 44.69 4.52
3107 6884 2.579410 ACCTTGGCGGTAGAAAACAT 57.421 45.000 0.00 0.00 46.73 2.71
3108 6885 2.433436 ACCTTGGCGGTAGAAAACATC 58.567 47.619 0.00 0.00 46.73 3.06
3109 6886 1.743394 CCTTGGCGGTAGAAAACATCC 59.257 52.381 0.00 0.00 0.00 3.51
3110 6887 1.743394 CTTGGCGGTAGAAAACATCCC 59.257 52.381 0.00 0.00 0.00 3.85
3111 6888 0.988832 TGGCGGTAGAAAACATCCCT 59.011 50.000 0.00 0.00 0.00 4.20
3112 6889 2.189676 TGGCGGTAGAAAACATCCCTA 58.810 47.619 0.00 0.00 0.00 3.53
3113 6890 2.093341 TGGCGGTAGAAAACATCCCTAC 60.093 50.000 0.00 0.00 33.79 3.18
3114 6891 2.558378 GCGGTAGAAAACATCCCTACC 58.442 52.381 0.00 0.00 45.47 3.18
3116 6893 2.558378 GGTAGAAAACATCCCTACCGC 58.442 52.381 0.00 0.00 41.83 5.68
3117 6894 2.558378 GTAGAAAACATCCCTACCGCC 58.442 52.381 0.00 0.00 0.00 6.13
3118 6895 0.988832 AGAAAACATCCCTACCGCCA 59.011 50.000 0.00 0.00 0.00 5.69
3119 6896 1.353022 AGAAAACATCCCTACCGCCAA 59.647 47.619 0.00 0.00 0.00 4.52
3120 6897 2.164338 GAAAACATCCCTACCGCCAAA 58.836 47.619 0.00 0.00 0.00 3.28
3121 6898 1.541379 AAACATCCCTACCGCCAAAC 58.459 50.000 0.00 0.00 0.00 2.93
3122 6899 0.402504 AACATCCCTACCGCCAAACA 59.597 50.000 0.00 0.00 0.00 2.83
3123 6900 0.035439 ACATCCCTACCGCCAAACAG 60.035 55.000 0.00 0.00 0.00 3.16
3124 6901 0.251916 CATCCCTACCGCCAAACAGA 59.748 55.000 0.00 0.00 0.00 3.41
3125 6902 0.252197 ATCCCTACCGCCAAACAGAC 59.748 55.000 0.00 0.00 0.00 3.51
3126 6903 0.834687 TCCCTACCGCCAAACAGACT 60.835 55.000 0.00 0.00 0.00 3.24
3127 6904 0.673644 CCCTACCGCCAAACAGACTG 60.674 60.000 0.00 0.00 0.00 3.51
3128 6905 0.673644 CCTACCGCCAAACAGACTGG 60.674 60.000 7.51 0.00 36.99 4.00
3134 6911 2.840974 CCAAACAGACTGGCGGTAG 58.159 57.895 7.51 0.00 0.00 3.18
3135 6912 0.673644 CCAAACAGACTGGCGGTAGG 60.674 60.000 7.51 0.00 0.00 3.18
3136 6913 1.003718 AAACAGACTGGCGGTAGGC 60.004 57.895 7.51 0.00 44.11 3.93
3137 6914 1.481056 AAACAGACTGGCGGTAGGCT 61.481 55.000 7.51 0.00 44.18 4.58
3138 6915 2.185350 CAGACTGGCGGTAGGCTG 59.815 66.667 0.00 0.00 46.58 4.85
3142 6919 3.294750 CTGGCGGTAGGCTGTACA 58.705 61.111 0.00 0.00 44.18 2.90
3143 6920 1.594833 CTGGCGGTAGGCTGTACAA 59.405 57.895 0.00 0.00 44.18 2.41
3144 6921 0.739813 CTGGCGGTAGGCTGTACAAC 60.740 60.000 0.00 0.00 44.18 3.32
3145 6922 1.449070 GGCGGTAGGCTGTACAACC 60.449 63.158 7.24 7.24 42.94 3.77
3146 6923 1.449070 GCGGTAGGCTGTACAACCC 60.449 63.158 11.76 7.82 39.11 4.11
3147 6924 1.896122 GCGGTAGGCTGTACAACCCT 61.896 60.000 11.76 14.48 39.11 4.34
3148 6925 1.477553 CGGTAGGCTGTACAACCCTA 58.522 55.000 11.76 13.53 0.00 3.53
3149 6926 1.135721 CGGTAGGCTGTACAACCCTAC 59.864 57.143 28.25 28.25 46.60 3.18
3150 6927 2.975732 GTAGGCTGTACAACCCTACC 57.024 55.000 27.02 16.52 43.31 3.18
3151 6928 1.135721 GTAGGCTGTACAACCCTACCG 59.864 57.143 27.02 5.83 43.31 4.02
3152 6929 0.543646 AGGCTGTACAACCCTACCGT 60.544 55.000 11.76 0.00 0.00 4.83
3153 6930 0.108472 GGCTGTACAACCCTACCGTC 60.108 60.000 3.75 0.00 0.00 4.79
3154 6931 0.604578 GCTGTACAACCCTACCGTCA 59.395 55.000 0.00 0.00 0.00 4.35
3155 6932 1.001181 GCTGTACAACCCTACCGTCAA 59.999 52.381 0.00 0.00 0.00 3.18
3156 6933 2.929592 GCTGTACAACCCTACCGTCAAG 60.930 54.545 0.00 0.00 0.00 3.02
3168 6945 2.594592 GTCAAGGTGCTTGGCGGT 60.595 61.111 0.00 0.00 41.33 5.68
3169 6946 1.302192 GTCAAGGTGCTTGGCGGTA 60.302 57.895 0.00 0.00 41.33 4.02
3170 6947 1.003839 TCAAGGTGCTTGGCGGTAG 60.004 57.895 0.00 0.00 41.33 3.18
3171 6948 2.040544 CAAGGTGCTTGGCGGTAGG 61.041 63.158 0.00 0.00 37.77 3.18
3172 6949 3.920093 AAGGTGCTTGGCGGTAGGC 62.920 63.158 0.00 0.00 44.11 3.93
3183 6960 4.735132 GGTAGGCACGAGCACGCA 62.735 66.667 7.26 0.00 44.61 5.24
3184 6961 3.479269 GTAGGCACGAGCACGCAC 61.479 66.667 7.26 0.00 44.61 5.34
3185 6962 3.680786 TAGGCACGAGCACGCACT 61.681 61.111 7.26 1.98 44.61 4.40
3186 6963 3.914605 TAGGCACGAGCACGCACTG 62.915 63.158 7.26 0.00 44.61 3.66
3198 6975 3.878086 CACGCACTGTGTTCAATACTT 57.122 42.857 9.86 0.00 43.88 2.24
3199 6976 4.983215 CACGCACTGTGTTCAATACTTA 57.017 40.909 9.86 0.00 43.88 2.24
3200 6977 4.946255 CACGCACTGTGTTCAATACTTAG 58.054 43.478 9.86 0.00 43.88 2.18
3201 6978 3.432252 ACGCACTGTGTTCAATACTTAGC 59.568 43.478 9.86 0.00 0.00 3.09
3202 6979 3.431912 CGCACTGTGTTCAATACTTAGCA 59.568 43.478 9.86 0.00 0.00 3.49
3203 6980 4.084066 CGCACTGTGTTCAATACTTAGCAA 60.084 41.667 9.86 0.00 0.00 3.91
3204 6981 5.385617 GCACTGTGTTCAATACTTAGCAAG 58.614 41.667 9.86 0.00 0.00 4.01
3205 6982 5.179368 GCACTGTGTTCAATACTTAGCAAGA 59.821 40.000 9.86 0.00 0.00 3.02
3206 6983 6.128172 GCACTGTGTTCAATACTTAGCAAGAT 60.128 38.462 9.86 0.00 0.00 2.40
3207 6984 7.573843 GCACTGTGTTCAATACTTAGCAAGATT 60.574 37.037 9.86 0.00 0.00 2.40
3208 6985 8.292448 CACTGTGTTCAATACTTAGCAAGATTT 58.708 33.333 0.00 0.00 0.00 2.17
3209 6986 8.850156 ACTGTGTTCAATACTTAGCAAGATTTT 58.150 29.630 3.37 0.00 0.00 1.82
3210 6987 9.121517 CTGTGTTCAATACTTAGCAAGATTTTG 57.878 33.333 3.37 0.00 37.36 2.44
3220 6997 1.173043 CAAGATTTTGCGGTAGGGCA 58.827 50.000 0.00 0.00 42.12 5.36
3221 6998 1.750778 CAAGATTTTGCGGTAGGGCAT 59.249 47.619 0.00 0.00 43.52 4.40
3222 6999 1.392589 AGATTTTGCGGTAGGGCATG 58.607 50.000 0.00 0.00 43.52 4.06
3223 7000 0.249031 GATTTTGCGGTAGGGCATGC 60.249 55.000 9.90 9.90 43.52 4.06
3224 7001 0.969917 ATTTTGCGGTAGGGCATGCA 60.970 50.000 21.36 0.00 43.52 3.96
3225 7002 1.181741 TTTTGCGGTAGGGCATGCAA 61.182 50.000 21.36 0.63 44.81 4.08
3226 7003 1.872197 TTTGCGGTAGGGCATGCAAC 61.872 55.000 21.36 13.81 46.00 4.17
3227 7004 3.518068 GCGGTAGGGCATGCAACC 61.518 66.667 21.36 20.81 0.00 3.77
3233 7010 2.828549 GGGCATGCAACCCTACCG 60.829 66.667 21.36 0.00 44.68 4.02
3234 7011 3.518068 GGCATGCAACCCTACCGC 61.518 66.667 21.36 0.00 0.00 5.68
3235 7012 3.518068 GCATGCAACCCTACCGCC 61.518 66.667 14.21 0.00 0.00 6.13
3236 7013 2.045438 CATGCAACCCTACCGCCA 60.045 61.111 0.00 0.00 0.00 5.69
3237 7014 2.114670 CATGCAACCCTACCGCCAG 61.115 63.158 0.00 0.00 0.00 4.85
3238 7015 3.344137 ATGCAACCCTACCGCCAGG 62.344 63.158 0.00 0.00 45.13 4.45
3244 7021 2.687566 CCTACCGCCAGGGACCTT 60.688 66.667 0.00 0.00 43.47 3.50
3245 7022 2.584608 CTACCGCCAGGGACCTTG 59.415 66.667 0.00 0.00 43.47 3.61
3246 7023 3.006728 TACCGCCAGGGACCTTGG 61.007 66.667 18.34 18.34 43.47 3.61
3257 7034 2.928396 ACCTTGGCGGTAGGCTGT 60.928 61.111 0.00 0.00 46.73 4.40
3258 7035 2.351276 CCTTGGCGGTAGGCTGTT 59.649 61.111 0.00 0.00 44.18 3.16
3259 7036 1.196104 ACCTTGGCGGTAGGCTGTTA 61.196 55.000 0.00 0.00 46.73 2.41
3260 7037 0.180406 CCTTGGCGGTAGGCTGTTAT 59.820 55.000 0.00 0.00 44.18 1.89
3261 7038 1.414919 CCTTGGCGGTAGGCTGTTATA 59.585 52.381 0.00 0.00 44.18 0.98
3262 7039 2.480845 CTTGGCGGTAGGCTGTTATAC 58.519 52.381 0.00 0.00 44.18 1.47
3263 7040 0.754472 TGGCGGTAGGCTGTTATACC 59.246 55.000 0.00 0.00 44.18 2.73
3264 7041 0.034476 GGCGGTAGGCTGTTATACCC 59.966 60.000 0.00 0.00 42.94 3.69
3265 7042 1.046204 GCGGTAGGCTGTTATACCCT 58.954 55.000 0.00 0.00 38.60 4.34
3266 7043 2.242043 GCGGTAGGCTGTTATACCCTA 58.758 52.381 0.00 0.00 38.60 3.53
3267 7044 2.029560 GCGGTAGGCTGTTATACCCTAC 60.030 54.545 0.00 7.39 46.60 3.18
3269 7046 3.930634 GTAGGCTGTTATACCCTACCG 57.069 52.381 0.00 0.00 43.31 4.02
3270 7047 1.046204 AGGCTGTTATACCCTACCGC 58.954 55.000 0.00 0.00 0.00 5.68
3271 7048 0.034476 GGCTGTTATACCCTACCGCC 59.966 60.000 0.00 0.00 37.46 6.13
3272 7049 0.754472 GCTGTTATACCCTACCGCCA 59.246 55.000 0.00 0.00 0.00 5.69
3273 7050 1.346722 GCTGTTATACCCTACCGCCAT 59.653 52.381 0.00 0.00 0.00 4.40
3274 7051 2.870435 GCTGTTATACCCTACCGCCATG 60.870 54.545 0.00 0.00 0.00 3.66
3275 7052 1.695242 TGTTATACCCTACCGCCATGG 59.305 52.381 7.63 7.63 46.41 3.66
3276 7053 1.972795 GTTATACCCTACCGCCATGGA 59.027 52.381 18.40 0.00 42.00 3.41
3277 7054 1.636148 TATACCCTACCGCCATGGAC 58.364 55.000 18.40 5.97 42.00 4.02
3278 7055 1.125711 ATACCCTACCGCCATGGACC 61.126 60.000 18.40 0.00 42.00 4.46
3279 7056 3.873812 CCCTACCGCCATGGACCC 61.874 72.222 18.40 0.00 42.00 4.46
3280 7057 2.768344 CCTACCGCCATGGACCCT 60.768 66.667 18.40 0.00 42.00 4.34
3281 7058 2.505982 CTACCGCCATGGACCCTG 59.494 66.667 18.40 0.04 42.00 4.45
3282 7059 3.757248 CTACCGCCATGGACCCTGC 62.757 68.421 18.40 0.00 42.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.132336 GGTGATCATCTCTTAGCATGCAA 58.868 43.478 21.98 11.13 0.00 4.08
1 2 3.390311 AGGTGATCATCTCTTAGCATGCA 59.610 43.478 21.98 2.77 0.00 3.96
2 3 3.747010 CAGGTGATCATCTCTTAGCATGC 59.253 47.826 10.51 10.51 0.00 4.06
41 1524 0.324943 ACAGTGGGACGAGGAAATGG 59.675 55.000 0.00 0.00 0.00 3.16
48 1531 0.608130 TTGGATGACAGTGGGACGAG 59.392 55.000 0.00 0.00 0.00 4.18
51 1534 1.673033 CGACTTGGATGACAGTGGGAC 60.673 57.143 0.00 0.00 0.00 4.46
89 1598 2.594592 ACCGCCACTCAAACTGCC 60.595 61.111 0.00 0.00 0.00 4.85
122 1631 4.336993 CGAGCTTAACTATCTCACACCTCT 59.663 45.833 0.00 0.00 0.00 3.69
136 1645 3.729684 GGTTAACGAAAGCGAGCTTAAC 58.270 45.455 11.00 10.60 41.64 2.01
152 1661 3.026694 GGTAGTAGAAGGGAGCGGTTAA 58.973 50.000 0.00 0.00 0.00 2.01
170 1679 1.271856 TCCAATGGTCTTGCGAGGTA 58.728 50.000 0.00 0.00 0.00 3.08
187 1696 3.071479 TGTACGGTTCATCTTGCTTTCC 58.929 45.455 0.00 0.00 0.00 3.13
262 1773 7.236007 CCATTGTGGTTAAGCTTCAAGCTGT 62.236 44.000 14.14 6.01 41.21 4.40
265 1776 3.255642 TCCATTGTGGTTAAGCTTCAAGC 59.744 43.478 0.00 0.00 39.20 4.01
266 1777 5.452078 TTCCATTGTGGTTAAGCTTCAAG 57.548 39.130 0.00 10.71 39.03 3.02
267 1778 5.860941 TTTCCATTGTGGTTAAGCTTCAA 57.139 34.783 0.00 11.26 39.03 2.69
268 1779 5.860941 TTTTCCATTGTGGTTAAGCTTCA 57.139 34.783 0.00 0.00 39.03 3.02
289 1800 4.523173 GCTAAACTGCTACCTTCCCTTTTT 59.477 41.667 0.00 0.00 0.00 1.94
290 1801 4.079970 GCTAAACTGCTACCTTCCCTTTT 58.920 43.478 0.00 0.00 0.00 2.27
291 1802 3.561528 GGCTAAACTGCTACCTTCCCTTT 60.562 47.826 0.00 0.00 0.00 3.11
292 1803 2.026169 GGCTAAACTGCTACCTTCCCTT 60.026 50.000 0.00 0.00 0.00 3.95
293 1804 1.560146 GGCTAAACTGCTACCTTCCCT 59.440 52.381 0.00 0.00 0.00 4.20
294 1805 1.280998 TGGCTAAACTGCTACCTTCCC 59.719 52.381 0.00 0.00 0.00 3.97
295 1806 2.357075 GTGGCTAAACTGCTACCTTCC 58.643 52.381 0.00 0.00 38.28 3.46
300 1811 1.555533 AGGAGGTGGCTAAACTGCTAC 59.444 52.381 0.00 0.00 42.52 3.58
301 1812 1.952621 AGGAGGTGGCTAAACTGCTA 58.047 50.000 0.00 0.00 30.81 3.49
302 1813 1.068121 AAGGAGGTGGCTAAACTGCT 58.932 50.000 0.00 0.00 34.20 4.24
303 1814 1.168714 CAAGGAGGTGGCTAAACTGC 58.831 55.000 0.00 0.00 0.00 4.40
304 1815 1.826385 CCAAGGAGGTGGCTAAACTG 58.174 55.000 0.00 0.00 0.00 3.16
312 1823 1.078848 CTTCGAGCCAAGGAGGTGG 60.079 63.158 0.00 0.00 42.05 4.61
313 1824 1.743252 GCTTCGAGCCAAGGAGGTG 60.743 63.158 0.00 0.00 40.61 4.00
314 1825 1.484444 AAGCTTCGAGCCAAGGAGGT 61.484 55.000 0.00 0.00 43.77 3.85
315 1826 0.537188 TAAGCTTCGAGCCAAGGAGG 59.463 55.000 0.00 0.00 43.77 4.30
316 1827 2.003301 GTTAAGCTTCGAGCCAAGGAG 58.997 52.381 0.00 0.00 43.77 3.69
317 1828 1.338769 GGTTAAGCTTCGAGCCAAGGA 60.339 52.381 0.00 0.00 43.77 3.36
318 1829 1.087501 GGTTAAGCTTCGAGCCAAGG 58.912 55.000 0.00 0.00 43.77 3.61
319 1830 1.464997 GTGGTTAAGCTTCGAGCCAAG 59.535 52.381 0.00 0.00 43.77 3.61
320 1831 1.202710 TGTGGTTAAGCTTCGAGCCAA 60.203 47.619 0.00 0.00 43.77 4.52
321 1832 0.394938 TGTGGTTAAGCTTCGAGCCA 59.605 50.000 0.00 0.53 43.77 4.75
322 1833 1.519408 TTGTGGTTAAGCTTCGAGCC 58.481 50.000 0.00 0.00 43.77 4.70
361 1872 5.854866 GGAATGAATCACGCATGACATAATG 59.145 40.000 0.00 0.00 37.79 1.90
404 1915 5.395682 TCCTTTGCTGGAAATCTTCATTG 57.604 39.130 0.00 0.00 32.39 2.82
453 1994 3.509184 AGAGAATTCAAGCCTTTCCTTGC 59.491 43.478 8.44 0.00 41.47 4.01
498 2039 6.205076 ACATGTTGTTTATACACCGCAGTTAA 59.795 34.615 0.00 0.00 32.98 2.01
506 2047 7.119116 TCACTGATGACATGTTGTTTATACACC 59.881 37.037 0.00 0.00 32.98 4.16
518 2059 7.654520 CCAAAATTTTCTTCACTGATGACATGT 59.345 33.333 0.00 0.00 33.38 3.21
519 2060 7.359765 GCCAAAATTTTCTTCACTGATGACATG 60.360 37.037 0.00 0.00 33.38 3.21
520 2061 6.647895 GCCAAAATTTTCTTCACTGATGACAT 59.352 34.615 0.00 0.00 33.38 3.06
521 2062 5.984926 GCCAAAATTTTCTTCACTGATGACA 59.015 36.000 0.00 0.00 33.38 3.58
522 2063 5.117592 CGCCAAAATTTTCTTCACTGATGAC 59.882 40.000 0.00 0.00 33.38 3.06
523 2064 5.009510 TCGCCAAAATTTTCTTCACTGATGA 59.990 36.000 0.00 0.00 0.00 2.92
535 2076 2.544903 CGGGTCACTTCGCCAAAATTTT 60.545 45.455 0.00 0.00 0.00 1.82
547 2088 3.126120 ATGAGCATCTGCGGGTCACTT 62.126 52.381 0.00 0.00 44.51 3.16
562 2103 6.929625 TGCTATTTCTAGGTCAGATATGAGC 58.070 40.000 11.51 11.51 36.64 4.26
567 2108 7.890515 CACAGATGCTATTTCTAGGTCAGATA 58.109 38.462 0.00 0.00 31.77 1.98
568 2109 6.757237 CACAGATGCTATTTCTAGGTCAGAT 58.243 40.000 0.00 0.00 31.77 2.90
598 2139 7.013655 CCAAATTCATAGAAACCCTGGACTATG 59.986 40.741 16.32 16.32 41.68 2.23
600 2141 6.216662 TCCAAATTCATAGAAACCCTGGACTA 59.783 38.462 0.00 0.00 0.00 2.59
601 2142 5.015178 TCCAAATTCATAGAAACCCTGGACT 59.985 40.000 0.00 0.00 0.00 3.85
602 2143 5.261216 TCCAAATTCATAGAAACCCTGGAC 58.739 41.667 0.00 0.00 0.00 4.02
615 2157 4.961438 AAGTGGCAACTTCCAAATTCAT 57.039 36.364 0.00 0.00 43.34 2.57
630 2172 1.474077 CATGGAAACCTGCTAAGTGGC 59.526 52.381 0.00 0.00 0.00 5.01
631 2173 2.094675 CCATGGAAACCTGCTAAGTGG 58.905 52.381 5.56 0.00 0.00 4.00
637 2179 0.706433 ATCACCCATGGAAACCTGCT 59.294 50.000 15.22 0.00 0.00 4.24
642 2184 5.680619 TGTATCACTATCACCCATGGAAAC 58.319 41.667 15.22 0.00 0.00 2.78
652 2194 6.657117 TCAGCCTATCTCTGTATCACTATCAC 59.343 42.308 0.00 0.00 33.48 3.06
653 2195 6.784031 TCAGCCTATCTCTGTATCACTATCA 58.216 40.000 0.00 0.00 33.48 2.15
654 2196 7.609918 TCTTCAGCCTATCTCTGTATCACTATC 59.390 40.741 0.00 0.00 33.48 2.08
655 2197 7.465960 TCTTCAGCCTATCTCTGTATCACTAT 58.534 38.462 0.00 0.00 33.48 2.12
656 2198 6.842676 TCTTCAGCCTATCTCTGTATCACTA 58.157 40.000 0.00 0.00 33.48 2.74
657 2199 5.700183 TCTTCAGCCTATCTCTGTATCACT 58.300 41.667 0.00 0.00 33.48 3.41
687 2229 3.589881 GCCATGGTGCATCGCTCC 61.590 66.667 14.67 0.15 41.88 4.70
690 2232 1.299620 GATTGCCATGGTGCATCGC 60.300 57.895 14.67 0.00 41.70 4.58
737 2285 3.006323 ACTCGCAGACAGATCACTTTCTT 59.994 43.478 0.00 0.00 31.73 2.52
763 2316 1.884235 ACTTGTCGAAGCCAAGAAGG 58.116 50.000 18.11 0.00 41.84 3.46
776 2329 9.699703 GAGGTATCTGGAAATAGATTACTTGTC 57.300 37.037 0.00 0.00 38.35 3.18
818 2371 1.526887 ACGTTGTGTGCGAGAAATCTG 59.473 47.619 0.00 0.00 0.00 2.90
842 2401 0.533032 AGCTTACCTCCTTCTGCGAC 59.467 55.000 0.00 0.00 0.00 5.19
863 2423 4.496341 CGTTCTTTGACTGTGATTGTTGCT 60.496 41.667 0.00 0.00 0.00 3.91
1027 2615 2.555199 GTAGGTGTGAGATGATGCCAC 58.445 52.381 0.00 0.00 0.00 5.01
1292 2916 1.604308 TCGAGCCCTACACCGAACA 60.604 57.895 0.00 0.00 0.00 3.18
1377 3339 1.450134 GATGCGCCATGTCACCTCA 60.450 57.895 4.18 0.00 0.00 3.86
1506 3492 3.572255 TGGATTTTCAGTACCAACTTGCC 59.428 43.478 0.00 0.00 31.97 4.52
1584 3570 2.700897 TCAGGTCTATCTTTGGCCTAGC 59.299 50.000 3.32 0.00 0.00 3.42
2446 4477 7.993821 TTGCAATTCAGTTTCGAACAAATAA 57.006 28.000 0.00 0.00 0.00 1.40
2448 4479 6.900568 TTTGCAATTCAGTTTCGAACAAAT 57.099 29.167 0.00 0.00 0.00 2.32
2454 4486 5.242069 TCTGTTTTGCAATTCAGTTTCGA 57.758 34.783 22.04 8.03 0.00 3.71
2460 4492 2.727798 CGGCTTCTGTTTTGCAATTCAG 59.272 45.455 19.00 19.00 0.00 3.02
2466 4498 1.795170 GCTCCGGCTTCTGTTTTGCA 61.795 55.000 0.00 0.00 35.22 4.08
2479 4511 0.377203 GCCAATTTCTTACGCTCCGG 59.623 55.000 0.00 0.00 0.00 5.14
2480 4512 1.369625 AGCCAATTTCTTACGCTCCG 58.630 50.000 0.00 0.00 0.00 4.63
2482 4514 5.093457 GGTTTAAGCCAATTTCTTACGCTC 58.907 41.667 3.05 0.00 0.00 5.03
2554 6312 5.769662 TCCTGATCTTGCAAAACATGTACTT 59.230 36.000 0.00 0.00 0.00 2.24
2555 6313 5.316167 TCCTGATCTTGCAAAACATGTACT 58.684 37.500 0.00 0.00 0.00 2.73
2556 6314 5.627499 TCCTGATCTTGCAAAACATGTAC 57.373 39.130 0.00 0.00 0.00 2.90
2557 6315 5.769662 ACTTCCTGATCTTGCAAAACATGTA 59.230 36.000 0.00 0.00 0.00 2.29
2558 6316 4.586001 ACTTCCTGATCTTGCAAAACATGT 59.414 37.500 0.00 0.00 0.00 3.21
2559 6317 5.048224 AGACTTCCTGATCTTGCAAAACATG 60.048 40.000 0.00 0.00 0.00 3.21
2560 6318 5.048224 CAGACTTCCTGATCTTGCAAAACAT 60.048 40.000 0.00 0.00 45.78 2.71
2561 6319 4.276678 CAGACTTCCTGATCTTGCAAAACA 59.723 41.667 0.00 0.18 45.78 2.83
2562 6320 4.320788 CCAGACTTCCTGATCTTGCAAAAC 60.321 45.833 0.00 0.00 45.78 2.43
2563 6321 3.822735 CCAGACTTCCTGATCTTGCAAAA 59.177 43.478 0.00 0.00 45.78 2.44
2564 6322 3.072915 TCCAGACTTCCTGATCTTGCAAA 59.927 43.478 0.00 0.00 45.78 3.68
2641 6417 6.506538 TCTTTACGGAGGGAGTACTAGTAT 57.493 41.667 5.75 0.00 0.00 2.12
2647 6423 8.854117 TCTAATATTTCTTTACGGAGGGAGTAC 58.146 37.037 0.00 0.00 0.00 2.73
2670 6446 9.731819 CAGTAAAATAGTGATCTAAACGCTCTA 57.268 33.333 0.00 0.00 0.00 2.43
2671 6447 8.467598 TCAGTAAAATAGTGATCTAAACGCTCT 58.532 33.333 0.00 0.00 33.40 4.09
2672 6448 8.630278 TCAGTAAAATAGTGATCTAAACGCTC 57.370 34.615 0.00 0.00 33.40 5.03
2719 6495 8.693625 GCCCTAATTTTACTACTCTCTCTGTAA 58.306 37.037 0.00 0.00 0.00 2.41
2720 6496 8.060075 AGCCCTAATTTTACTACTCTCTCTGTA 58.940 37.037 0.00 0.00 0.00 2.74
2721 6497 6.898521 AGCCCTAATTTTACTACTCTCTCTGT 59.101 38.462 0.00 0.00 0.00 3.41
2722 6498 7.206687 CAGCCCTAATTTTACTACTCTCTCTG 58.793 42.308 0.00 0.00 0.00 3.35
2723 6499 6.183360 GCAGCCCTAATTTTACTACTCTCTCT 60.183 42.308 0.00 0.00 0.00 3.10
2724 6500 5.986741 GCAGCCCTAATTTTACTACTCTCTC 59.013 44.000 0.00 0.00 0.00 3.20
2725 6501 5.425539 TGCAGCCCTAATTTTACTACTCTCT 59.574 40.000 0.00 0.00 0.00 3.10
2726 6502 5.671493 TGCAGCCCTAATTTTACTACTCTC 58.329 41.667 0.00 0.00 0.00 3.20
2727 6503 5.693769 TGCAGCCCTAATTTTACTACTCT 57.306 39.130 0.00 0.00 0.00 3.24
2728 6504 6.055588 TGATGCAGCCCTAATTTTACTACTC 58.944 40.000 0.00 0.00 0.00 2.59
2739 6515 1.419381 TACCGATGATGCAGCCCTAA 58.581 50.000 0.00 0.00 0.00 2.69
2747 6523 4.330074 CGGAAGGAATTATACCGATGATGC 59.670 45.833 0.00 0.00 45.31 3.91
2793 6569 7.602644 TCTGCTTTGGTTATCTGTTACTAGTTG 59.397 37.037 0.00 0.00 0.00 3.16
2800 6576 8.956426 CCTAAATTCTGCTTTGGTTATCTGTTA 58.044 33.333 0.00 0.00 0.00 2.41
2830 6606 4.661222 TCAGTAATCCTTTCATGTTGGCA 58.339 39.130 0.00 0.00 0.00 4.92
2835 6611 8.306761 GTTCCAAATTCAGTAATCCTTTCATGT 58.693 33.333 0.00 0.00 0.00 3.21
2870 6646 7.772292 ACATCAGCAATCATCACTACATAAAGT 59.228 33.333 0.00 0.00 0.00 2.66
2871 6647 8.151141 ACATCAGCAATCATCACTACATAAAG 57.849 34.615 0.00 0.00 0.00 1.85
2872 6648 9.612066 TTACATCAGCAATCATCACTACATAAA 57.388 29.630 0.00 0.00 0.00 1.40
2874 6650 9.264719 CTTTACATCAGCAATCATCACTACATA 57.735 33.333 0.00 0.00 0.00 2.29
2875 6651 7.228108 CCTTTACATCAGCAATCATCACTACAT 59.772 37.037 0.00 0.00 0.00 2.29
2877 6653 6.017605 CCCTTTACATCAGCAATCATCACTAC 60.018 42.308 0.00 0.00 0.00 2.73
2878 6654 6.057533 CCCTTTACATCAGCAATCATCACTA 58.942 40.000 0.00 0.00 0.00 2.74
2879 6655 4.885907 CCCTTTACATCAGCAATCATCACT 59.114 41.667 0.00 0.00 0.00 3.41
2926 6703 3.056328 GCGCTTTCACCCTCCCAC 61.056 66.667 0.00 0.00 0.00 4.61
2930 6707 2.357034 TGACGCGCTTTCACCCTC 60.357 61.111 5.73 0.00 0.00 4.30
2949 6726 2.524569 ACACAAAATTTTGCCCTCCG 57.475 45.000 26.94 13.03 41.79 4.63
2954 6731 4.397730 AGGGTCAAAACACAAAATTTTGCC 59.602 37.500 26.94 17.70 43.62 4.52
2955 6732 5.559427 AGGGTCAAAACACAAAATTTTGC 57.441 34.783 26.94 10.69 43.62 3.68
2956 6733 8.296000 AGAAAAGGGTCAAAACACAAAATTTTG 58.704 29.630 25.73 25.73 44.74 2.44
2957 6734 8.296000 CAGAAAAGGGTCAAAACACAAAATTTT 58.704 29.630 0.00 0.00 0.00 1.82
2958 6735 7.663493 TCAGAAAAGGGTCAAAACACAAAATTT 59.337 29.630 0.00 0.00 0.00 1.82
2959 6736 7.164803 TCAGAAAAGGGTCAAAACACAAAATT 58.835 30.769 0.00 0.00 0.00 1.82
2960 6737 6.706295 TCAGAAAAGGGTCAAAACACAAAAT 58.294 32.000 0.00 0.00 0.00 1.82
2961 6738 6.102897 TCAGAAAAGGGTCAAAACACAAAA 57.897 33.333 0.00 0.00 0.00 2.44
2962 6739 5.730296 TCAGAAAAGGGTCAAAACACAAA 57.270 34.783 0.00 0.00 0.00 2.83
2963 6740 5.730296 TTCAGAAAAGGGTCAAAACACAA 57.270 34.783 0.00 0.00 0.00 3.33
2964 6741 5.474825 GTTTCAGAAAAGGGTCAAAACACA 58.525 37.500 0.00 0.00 31.18 3.72
2965 6742 4.868171 GGTTTCAGAAAAGGGTCAAAACAC 59.132 41.667 0.00 0.00 31.85 3.32
2966 6743 4.775253 AGGTTTCAGAAAAGGGTCAAAACA 59.225 37.500 0.00 0.00 31.85 2.83
2967 6744 5.339008 AGGTTTCAGAAAAGGGTCAAAAC 57.661 39.130 0.00 0.00 0.00 2.43
2968 6745 7.469456 CGAATAGGTTTCAGAAAAGGGTCAAAA 60.469 37.037 0.00 0.00 0.00 2.44
2969 6746 6.016610 CGAATAGGTTTCAGAAAAGGGTCAAA 60.017 38.462 0.00 0.00 0.00 2.69
2970 6747 5.472137 CGAATAGGTTTCAGAAAAGGGTCAA 59.528 40.000 0.00 0.00 0.00 3.18
2971 6748 5.001232 CGAATAGGTTTCAGAAAAGGGTCA 58.999 41.667 0.00 0.00 0.00 4.02
2972 6749 5.243207 TCGAATAGGTTTCAGAAAAGGGTC 58.757 41.667 0.00 0.00 0.00 4.46
2973 6750 5.012768 TCTCGAATAGGTTTCAGAAAAGGGT 59.987 40.000 0.00 0.00 0.00 4.34
2974 6751 5.488341 TCTCGAATAGGTTTCAGAAAAGGG 58.512 41.667 0.00 0.00 0.00 3.95
2975 6752 7.010923 CAGATCTCGAATAGGTTTCAGAAAAGG 59.989 40.741 0.00 0.00 0.00 3.11
2976 6753 7.761704 TCAGATCTCGAATAGGTTTCAGAAAAG 59.238 37.037 0.00 0.00 0.00 2.27
2977 6754 7.545965 GTCAGATCTCGAATAGGTTTCAGAAAA 59.454 37.037 0.00 0.00 0.00 2.29
2978 6755 7.036220 GTCAGATCTCGAATAGGTTTCAGAAA 58.964 38.462 0.00 0.00 0.00 2.52
2979 6756 6.405953 GGTCAGATCTCGAATAGGTTTCAGAA 60.406 42.308 0.00 0.00 0.00 3.02
2980 6757 5.067936 GGTCAGATCTCGAATAGGTTTCAGA 59.932 44.000 0.00 0.00 0.00 3.27
2981 6758 5.285651 GGTCAGATCTCGAATAGGTTTCAG 58.714 45.833 0.00 0.00 0.00 3.02
2982 6759 4.099573 GGGTCAGATCTCGAATAGGTTTCA 59.900 45.833 0.00 0.00 0.00 2.69
2983 6760 4.342665 AGGGTCAGATCTCGAATAGGTTTC 59.657 45.833 0.00 0.00 0.00 2.78
2984 6761 4.290942 AGGGTCAGATCTCGAATAGGTTT 58.709 43.478 0.00 0.00 0.00 3.27
2985 6762 3.917300 AGGGTCAGATCTCGAATAGGTT 58.083 45.455 0.00 0.00 0.00 3.50
2986 6763 3.603965 AGGGTCAGATCTCGAATAGGT 57.396 47.619 0.00 0.00 0.00 3.08
2987 6764 4.658063 ACTAGGGTCAGATCTCGAATAGG 58.342 47.826 0.00 0.00 0.00 2.57
2988 6765 6.263392 TCAAACTAGGGTCAGATCTCGAATAG 59.737 42.308 0.00 1.66 0.00 1.73
2989 6766 6.127101 TCAAACTAGGGTCAGATCTCGAATA 58.873 40.000 0.00 0.00 0.00 1.75
2990 6767 4.956700 TCAAACTAGGGTCAGATCTCGAAT 59.043 41.667 0.00 0.00 0.00 3.34
2991 6768 4.341487 TCAAACTAGGGTCAGATCTCGAA 58.659 43.478 0.00 0.00 0.00 3.71
2992 6769 3.964411 TCAAACTAGGGTCAGATCTCGA 58.036 45.455 0.00 0.00 0.00 4.04
2993 6770 4.720649 TTCAAACTAGGGTCAGATCTCG 57.279 45.455 0.00 0.00 0.00 4.04
3015 6792 7.442062 AGCAAAATGGTCAAATCTCGAATTTTT 59.558 29.630 3.73 0.00 0.00 1.94
3016 6793 6.930722 AGCAAAATGGTCAAATCTCGAATTTT 59.069 30.769 3.73 0.00 0.00 1.82
3017 6794 6.458210 AGCAAAATGGTCAAATCTCGAATTT 58.542 32.000 0.00 0.00 0.00 1.82
3018 6795 6.029346 AGCAAAATGGTCAAATCTCGAATT 57.971 33.333 0.00 0.00 0.00 2.17
3019 6796 5.649782 AGCAAAATGGTCAAATCTCGAAT 57.350 34.783 0.00 0.00 0.00 3.34
3020 6797 5.106317 GGTAGCAAAATGGTCAAATCTCGAA 60.106 40.000 0.00 0.00 0.00 3.71
3021 6798 4.394920 GGTAGCAAAATGGTCAAATCTCGA 59.605 41.667 0.00 0.00 0.00 4.04
3022 6799 4.662145 GGTAGCAAAATGGTCAAATCTCG 58.338 43.478 0.00 0.00 0.00 4.04
3023 6800 4.662145 CGGTAGCAAAATGGTCAAATCTC 58.338 43.478 0.00 0.00 0.00 2.75
3024 6801 3.119495 GCGGTAGCAAAATGGTCAAATCT 60.119 43.478 0.00 0.00 44.35 2.40
3025 6802 3.179048 GCGGTAGCAAAATGGTCAAATC 58.821 45.455 0.00 0.00 44.35 2.17
3026 6803 3.230743 GCGGTAGCAAAATGGTCAAAT 57.769 42.857 0.00 0.00 44.35 2.32
3027 6804 2.715737 GCGGTAGCAAAATGGTCAAA 57.284 45.000 0.00 0.00 44.35 2.69
3039 6816 1.583054 CCATTTACTCTGGCGGTAGC 58.417 55.000 0.00 0.00 44.18 3.58
3046 6823 1.202651 CCCTACCGCCATTTACTCTGG 60.203 57.143 0.00 0.00 36.81 3.86
3047 6824 1.485066 ACCCTACCGCCATTTACTCTG 59.515 52.381 0.00 0.00 0.00 3.35
3048 6825 1.485066 CACCCTACCGCCATTTACTCT 59.515 52.381 0.00 0.00 0.00 3.24
3049 6826 1.208776 ACACCCTACCGCCATTTACTC 59.791 52.381 0.00 0.00 0.00 2.59
3050 6827 1.282382 ACACCCTACCGCCATTTACT 58.718 50.000 0.00 0.00 0.00 2.24
3051 6828 2.938451 GTTACACCCTACCGCCATTTAC 59.062 50.000 0.00 0.00 0.00 2.01
3052 6829 2.570752 TGTTACACCCTACCGCCATTTA 59.429 45.455 0.00 0.00 0.00 1.40
3053 6830 1.351683 TGTTACACCCTACCGCCATTT 59.648 47.619 0.00 0.00 0.00 2.32
3054 6831 0.985760 TGTTACACCCTACCGCCATT 59.014 50.000 0.00 0.00 0.00 3.16
3055 6832 0.539986 CTGTTACACCCTACCGCCAT 59.460 55.000 0.00 0.00 0.00 4.40
3056 6833 1.976898 CTGTTACACCCTACCGCCA 59.023 57.895 0.00 0.00 0.00 5.69
3057 6834 1.449070 GCTGTTACACCCTACCGCC 60.449 63.158 0.00 0.00 0.00 6.13
3058 6835 0.036671 AAGCTGTTACACCCTACCGC 60.037 55.000 0.00 0.00 0.00 5.68
3059 6836 2.417787 GGTAAGCTGTTACACCCTACCG 60.418 54.545 0.00 0.00 40.46 4.02
3060 6837 2.417787 CGGTAAGCTGTTACACCCTACC 60.418 54.545 0.00 0.00 40.46 3.18
3061 6838 2.884827 CGGTAAGCTGTTACACCCTAC 58.115 52.381 0.00 0.00 40.46 3.18
3062 6839 1.205417 GCGGTAAGCTGTTACACCCTA 59.795 52.381 0.00 0.00 40.46 3.53
3063 6840 0.036671 GCGGTAAGCTGTTACACCCT 60.037 55.000 0.00 0.00 40.46 4.34
3064 6841 2.463592 GCGGTAAGCTGTTACACCC 58.536 57.895 0.00 0.00 40.46 4.61
3075 6852 0.108138 CCAAGGTCTCTGGCGGTAAG 60.108 60.000 0.00 0.00 0.00 2.34
3076 6853 1.980052 CCAAGGTCTCTGGCGGTAA 59.020 57.895 0.00 0.00 0.00 2.85
3077 6854 2.656069 GCCAAGGTCTCTGGCGGTA 61.656 63.158 0.00 0.00 39.06 4.02
3078 6855 4.021925 GCCAAGGTCTCTGGCGGT 62.022 66.667 0.00 0.00 39.06 5.68
3090 6867 1.743394 GGGATGTTTTCTACCGCCAAG 59.257 52.381 0.00 0.00 0.00 3.61
3091 6868 1.353022 AGGGATGTTTTCTACCGCCAA 59.647 47.619 0.00 0.00 0.00 4.52
3092 6869 0.988832 AGGGATGTTTTCTACCGCCA 59.011 50.000 0.00 0.00 0.00 5.69
3093 6870 2.558378 GTAGGGATGTTTTCTACCGCC 58.442 52.381 0.00 0.00 0.00 6.13
3094 6871 2.558378 GGTAGGGATGTTTTCTACCGC 58.442 52.381 0.00 0.00 42.16 5.68
3096 6873 2.558378 GCGGTAGGGATGTTTTCTACC 58.442 52.381 8.30 8.30 45.71 3.18
3097 6874 2.093341 TGGCGGTAGGGATGTTTTCTAC 60.093 50.000 0.00 0.00 34.31 2.59
3098 6875 2.189676 TGGCGGTAGGGATGTTTTCTA 58.810 47.619 0.00 0.00 0.00 2.10
3099 6876 0.988832 TGGCGGTAGGGATGTTTTCT 59.011 50.000 0.00 0.00 0.00 2.52
3100 6877 1.828979 TTGGCGGTAGGGATGTTTTC 58.171 50.000 0.00 0.00 0.00 2.29
3101 6878 1.890489 GTTTGGCGGTAGGGATGTTTT 59.110 47.619 0.00 0.00 0.00 2.43
3102 6879 1.202952 TGTTTGGCGGTAGGGATGTTT 60.203 47.619 0.00 0.00 0.00 2.83
3103 6880 0.402504 TGTTTGGCGGTAGGGATGTT 59.597 50.000 0.00 0.00 0.00 2.71
3104 6881 0.035439 CTGTTTGGCGGTAGGGATGT 60.035 55.000 0.00 0.00 0.00 3.06
3105 6882 0.251916 TCTGTTTGGCGGTAGGGATG 59.748 55.000 0.00 0.00 0.00 3.51
3106 6883 0.252197 GTCTGTTTGGCGGTAGGGAT 59.748 55.000 0.00 0.00 0.00 3.85
3107 6884 0.834687 AGTCTGTTTGGCGGTAGGGA 60.835 55.000 0.00 0.00 0.00 4.20
3108 6885 0.673644 CAGTCTGTTTGGCGGTAGGG 60.674 60.000 0.00 0.00 0.00 3.53
3109 6886 0.673644 CCAGTCTGTTTGGCGGTAGG 60.674 60.000 0.00 0.00 0.00 3.18
3110 6887 2.840974 CCAGTCTGTTTGGCGGTAG 58.159 57.895 0.00 0.00 0.00 3.18
3116 6893 0.673644 CCTACCGCCAGTCTGTTTGG 60.674 60.000 0.00 0.12 38.78 3.28
3117 6894 1.298859 GCCTACCGCCAGTCTGTTTG 61.299 60.000 0.00 0.00 0.00 2.93
3118 6895 1.003718 GCCTACCGCCAGTCTGTTT 60.004 57.895 0.00 0.00 0.00 2.83
3119 6896 1.913762 AGCCTACCGCCAGTCTGTT 60.914 57.895 0.00 0.00 38.78 3.16
3120 6897 2.283966 AGCCTACCGCCAGTCTGT 60.284 61.111 0.00 0.00 38.78 3.41
3121 6898 1.320344 TACAGCCTACCGCCAGTCTG 61.320 60.000 0.00 0.00 38.78 3.51
3122 6899 1.000019 TACAGCCTACCGCCAGTCT 60.000 57.895 0.00 0.00 38.78 3.24
3123 6900 1.141234 GTACAGCCTACCGCCAGTC 59.859 63.158 0.00 0.00 38.78 3.51
3124 6901 1.189524 TTGTACAGCCTACCGCCAGT 61.190 55.000 0.00 0.00 38.78 4.00
3125 6902 0.739813 GTTGTACAGCCTACCGCCAG 60.740 60.000 0.00 0.00 38.78 4.85
3126 6903 1.294138 GTTGTACAGCCTACCGCCA 59.706 57.895 0.00 0.00 38.78 5.69
3127 6904 1.449070 GGTTGTACAGCCTACCGCC 60.449 63.158 20.56 0.00 38.78 6.13
3128 6905 1.449070 GGGTTGTACAGCCTACCGC 60.449 63.158 25.66 7.37 40.32 5.68
3129 6906 4.926207 GGGTTGTACAGCCTACCG 57.074 61.111 25.66 0.00 40.32 4.02
3134 6911 0.108472 GACGGTAGGGTTGTACAGCC 60.108 60.000 19.77 19.77 44.40 4.85
3135 6912 0.604578 TGACGGTAGGGTTGTACAGC 59.395 55.000 0.27 0.27 0.00 4.40
3136 6913 2.353406 CCTTGACGGTAGGGTTGTACAG 60.353 54.545 0.00 0.00 0.00 2.74
3137 6914 1.619827 CCTTGACGGTAGGGTTGTACA 59.380 52.381 0.00 0.00 0.00 2.90
3138 6915 1.620323 ACCTTGACGGTAGGGTTGTAC 59.380 52.381 2.22 0.00 46.73 2.90
3139 6916 1.619827 CACCTTGACGGTAGGGTTGTA 59.380 52.381 2.22 0.00 46.94 2.41
3140 6917 0.395312 CACCTTGACGGTAGGGTTGT 59.605 55.000 2.22 0.00 46.94 3.32
3141 6918 0.953960 GCACCTTGACGGTAGGGTTG 60.954 60.000 2.22 0.00 46.94 3.77
3142 6919 1.125711 AGCACCTTGACGGTAGGGTT 61.126 55.000 2.22 0.00 46.94 4.11
3143 6920 1.125711 AAGCACCTTGACGGTAGGGT 61.126 55.000 2.22 0.00 46.94 4.34
3144 6921 0.673644 CAAGCACCTTGACGGTAGGG 60.674 60.000 2.22 0.00 46.94 3.53
3145 6922 0.673644 CCAAGCACCTTGACGGTAGG 60.674 60.000 6.54 0.00 46.94 3.18
3146 6923 1.298859 GCCAAGCACCTTGACGGTAG 61.299 60.000 6.54 0.00 46.94 3.18
3147 6924 1.302192 GCCAAGCACCTTGACGGTA 60.302 57.895 6.54 0.00 46.94 4.02
3149 6926 3.726517 CGCCAAGCACCTTGACGG 61.727 66.667 6.54 0.00 42.03 4.79
3150 6927 3.726517 CCGCCAAGCACCTTGACG 61.727 66.667 6.54 6.62 44.49 4.35
3151 6928 1.298859 CTACCGCCAAGCACCTTGAC 61.299 60.000 6.54 0.00 43.42 3.18
3152 6929 1.003839 CTACCGCCAAGCACCTTGA 60.004 57.895 6.54 0.00 43.42 3.02
3153 6930 2.040544 CCTACCGCCAAGCACCTTG 61.041 63.158 0.00 0.00 40.75 3.61
3154 6931 2.351276 CCTACCGCCAAGCACCTT 59.649 61.111 0.00 0.00 0.00 3.50
3155 6932 4.410400 GCCTACCGCCAAGCACCT 62.410 66.667 0.00 0.00 0.00 4.00
3156 6933 4.715523 TGCCTACCGCCAAGCACC 62.716 66.667 0.00 0.00 36.24 5.01
3159 6936 4.752879 TCGTGCCTACCGCCAAGC 62.753 66.667 0.00 0.00 36.24 4.01
3160 6937 2.509336 CTCGTGCCTACCGCCAAG 60.509 66.667 0.00 0.00 36.24 3.61
3161 6938 4.752879 GCTCGTGCCTACCGCCAA 62.753 66.667 0.00 0.00 36.24 4.52
3166 6943 4.735132 TGCGTGCTCGTGCCTACC 62.735 66.667 10.18 0.00 39.49 3.18
3167 6944 3.479269 GTGCGTGCTCGTGCCTAC 61.479 66.667 10.18 0.00 39.49 3.18
3168 6945 3.680786 AGTGCGTGCTCGTGCCTA 61.681 61.111 10.18 0.00 39.49 3.93
3171 6948 4.360027 CACAGTGCGTGCTCGTGC 62.360 66.667 10.18 1.71 39.19 5.34
3179 6956 3.432252 GCTAAGTATTGAACACAGTGCGT 59.568 43.478 0.00 0.00 0.00 5.24
3180 6957 3.431912 TGCTAAGTATTGAACACAGTGCG 59.568 43.478 0.00 0.00 0.00 5.34
3181 6958 5.179368 TCTTGCTAAGTATTGAACACAGTGC 59.821 40.000 0.00 0.00 0.00 4.40
3182 6959 6.785488 TCTTGCTAAGTATTGAACACAGTG 57.215 37.500 0.00 0.00 0.00 3.66
3183 6960 7.986085 AATCTTGCTAAGTATTGAACACAGT 57.014 32.000 0.00 0.00 0.00 3.55
3184 6961 9.121517 CAAAATCTTGCTAAGTATTGAACACAG 57.878 33.333 0.00 0.00 0.00 3.66
3201 6978 1.173043 TGCCCTACCGCAAAATCTTG 58.827 50.000 0.00 0.00 35.32 3.02
3202 6979 1.750778 CATGCCCTACCGCAAAATCTT 59.249 47.619 0.00 0.00 43.24 2.40
3203 6980 1.392589 CATGCCCTACCGCAAAATCT 58.607 50.000 0.00 0.00 43.24 2.40
3204 6981 0.249031 GCATGCCCTACCGCAAAATC 60.249 55.000 6.36 0.00 43.24 2.17
3205 6982 0.969917 TGCATGCCCTACCGCAAAAT 60.970 50.000 16.68 0.00 43.24 1.82
3206 6983 1.181741 TTGCATGCCCTACCGCAAAA 61.182 50.000 16.68 0.00 43.24 2.44
3207 6984 1.604879 TTGCATGCCCTACCGCAAA 60.605 52.632 16.68 0.00 43.24 3.68
3208 6985 2.034843 TTGCATGCCCTACCGCAA 59.965 55.556 16.68 0.00 43.24 4.85
3209 6986 2.749839 GTTGCATGCCCTACCGCA 60.750 61.111 16.68 0.00 44.35 5.69
3210 6987 3.518068 GGTTGCATGCCCTACCGC 61.518 66.667 16.68 0.00 0.00 5.68
3211 6988 2.828549 GGGTTGCATGCCCTACCG 60.829 66.667 16.68 0.00 42.81 4.02
3216 6993 2.828549 CGGTAGGGTTGCATGCCC 60.829 66.667 16.68 16.67 46.43 5.36
3217 6994 3.518068 GCGGTAGGGTTGCATGCC 61.518 66.667 16.68 0.00 0.00 4.40
3218 6995 3.518068 GGCGGTAGGGTTGCATGC 61.518 66.667 11.82 11.82 0.00 4.06
3219 6996 2.045438 TGGCGGTAGGGTTGCATG 60.045 61.111 0.00 0.00 0.00 4.06
3220 6997 2.272146 CTGGCGGTAGGGTTGCAT 59.728 61.111 0.00 0.00 0.00 3.96
3221 6998 4.028490 CCTGGCGGTAGGGTTGCA 62.028 66.667 0.00 0.00 34.06 4.08
3227 7004 2.687566 AAGGTCCCTGGCGGTAGG 60.688 66.667 0.00 0.00 37.59 3.18
3228 7005 2.584608 CAAGGTCCCTGGCGGTAG 59.415 66.667 0.00 0.00 0.00 3.18
3229 7006 3.006728 CCAAGGTCCCTGGCGGTA 61.007 66.667 0.00 0.00 0.00 4.02
3242 7019 2.480845 GTATAACAGCCTACCGCCAAG 58.519 52.381 0.00 0.00 38.78 3.61
3243 7020 1.139455 GGTATAACAGCCTACCGCCAA 59.861 52.381 0.00 0.00 38.78 4.52
3244 7021 0.754472 GGTATAACAGCCTACCGCCA 59.246 55.000 0.00 0.00 38.78 5.69
3245 7022 0.034476 GGGTATAACAGCCTACCGCC 59.966 60.000 0.00 0.00 41.95 6.13
3246 7023 3.601277 GGGTATAACAGCCTACCGC 57.399 57.895 0.00 0.00 41.95 5.68
3252 7029 0.034476 GGCGGTAGGGTATAACAGCC 59.966 60.000 1.03 1.03 46.91 4.85
3253 7030 0.754472 TGGCGGTAGGGTATAACAGC 59.246 55.000 0.00 0.00 36.28 4.40
3254 7031 2.289444 CCATGGCGGTAGGGTATAACAG 60.289 54.545 0.00 0.00 0.00 3.16
3255 7032 1.695242 CCATGGCGGTAGGGTATAACA 59.305 52.381 0.00 0.00 0.00 2.41
3256 7033 1.972795 TCCATGGCGGTAGGGTATAAC 59.027 52.381 6.96 0.00 35.57 1.89
3257 7034 1.972795 GTCCATGGCGGTAGGGTATAA 59.027 52.381 6.96 0.00 35.57 0.98
3258 7035 1.636148 GTCCATGGCGGTAGGGTATA 58.364 55.000 6.96 0.00 35.57 1.47
3259 7036 1.125711 GGTCCATGGCGGTAGGGTAT 61.126 60.000 6.96 0.00 35.57 2.73
3260 7037 1.763256 GGTCCATGGCGGTAGGGTA 60.763 63.158 6.96 0.00 35.57 3.69
3261 7038 3.087906 GGTCCATGGCGGTAGGGT 61.088 66.667 6.96 0.00 35.57 4.34
3262 7039 3.873812 GGGTCCATGGCGGTAGGG 61.874 72.222 6.96 0.00 35.57 3.53
3263 7040 2.768344 AGGGTCCATGGCGGTAGG 60.768 66.667 6.96 0.00 35.57 3.18
3264 7041 2.505982 CAGGGTCCATGGCGGTAG 59.494 66.667 6.96 0.00 35.57 3.18
3265 7042 3.792736 GCAGGGTCCATGGCGGTA 61.793 66.667 6.96 0.00 35.57 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.