Multiple sequence alignment - TraesCS7B01G325700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G325700 chr7B 100.000 2723 0 0 1 2723 578386654 578383932 0.000000e+00 5029.0
1 TraesCS7B01G325700 chr7B 78.892 758 135 16 1648 2390 578294325 578293578 8.760000e-135 490.0
2 TraesCS7B01G325700 chr7B 84.906 106 16 0 2258 2363 251668698 251668803 1.030000e-19 108.0
3 TraesCS7B01G325700 chr7B 83.908 87 11 2 1970 2056 643326897 643326980 2.250000e-11 80.5
4 TraesCS7B01G325700 chr7D 92.500 960 37 11 798 1725 535906832 535905876 0.000000e+00 1341.0
5 TraesCS7B01G325700 chr7D 89.004 773 51 15 1 751 535907594 535906834 0.000000e+00 926.0
6 TraesCS7B01G325700 chr7D 87.500 152 19 0 2572 2723 538591117 538591268 2.790000e-40 176.0
7 TraesCS7B01G325700 chr7A 91.429 700 39 6 1047 1725 617435179 617435878 0.000000e+00 941.0
8 TraesCS7B01G325700 chr7A 89.770 479 40 2 264 742 617434480 617434949 3.000000e-169 604.0
9 TraesCS7B01G325700 chr7A 80.183 545 63 22 1648 2176 617436477 617436992 1.540000e-97 366.0
10 TraesCS7B01G325700 chr7A 92.742 248 10 7 1 242 617434247 617434492 4.310000e-93 351.0
11 TraesCS7B01G325700 chr7A 90.948 232 3 11 798 1017 617434960 617435185 2.050000e-76 296.0
12 TraesCS7B01G325700 chr7A 86.916 107 14 0 2258 2364 316542406 316542512 1.320000e-23 121.0
13 TraesCS7B01G325700 chr6D 88.816 152 17 0 2571 2722 118601147 118600996 1.290000e-43 187.0
14 TraesCS7B01G325700 chr6A 89.262 149 16 0 2574 2722 591479346 591479198 1.290000e-43 187.0
15 TraesCS7B01G325700 chr2A 88.816 152 17 0 2572 2723 265272001 265272152 1.290000e-43 187.0
16 TraesCS7B01G325700 chr2A 87.421 159 17 3 2567 2723 634886321 634886164 2.150000e-41 180.0
17 TraesCS7B01G325700 chr1D 88.816 152 17 0 2572 2723 391091490 391091339 1.290000e-43 187.0
18 TraesCS7B01G325700 chr1D 87.500 152 19 0 2572 2723 30421637 30421486 2.790000e-40 176.0
19 TraesCS7B01G325700 chr1D 88.350 103 12 0 2261 2363 370863664 370863562 1.020000e-24 124.0
20 TraesCS7B01G325700 chr1D 92.537 67 3 2 39 103 462304764 462304830 8.030000e-16 95.3
21 TraesCS7B01G325700 chr1D 84.615 78 12 0 1987 2064 370881385 370881308 8.080000e-11 78.7
22 TraesCS7B01G325700 chr1A 88.158 152 17 1 2572 2723 16311723 16311873 2.150000e-41 180.0
23 TraesCS7B01G325700 chr4A 87.500 152 19 0 2572 2723 718070580 718070731 2.790000e-40 176.0
24 TraesCS7B01G325700 chr4A 94.444 36 2 0 2287 2322 38735902 38735937 3.790000e-04 56.5
25 TraesCS7B01G325700 chr5B 90.291 103 10 0 2261 2363 268519652 268519550 4.730000e-28 135.0
26 TraesCS7B01G325700 chr5A 90.291 103 10 0 2261 2363 318838981 318838879 4.730000e-28 135.0
27 TraesCS7B01G325700 chr5A 87.037 54 5 2 142 194 661217368 661217316 2.930000e-05 60.2
28 TraesCS7B01G325700 chr1B 78.378 185 28 7 53 233 156580137 156580313 2.870000e-20 110.0
29 TraesCS7B01G325700 chr1B 75.294 170 33 6 1883 2047 531375503 531375668 3.760000e-09 73.1
30 TraesCS7B01G325700 chr3A 83.036 112 15 3 2254 2363 465254226 465254335 6.210000e-17 99.0
31 TraesCS7B01G325700 chr3A 90.000 50 4 1 39 87 7219734 7219783 2.260000e-06 63.9
32 TraesCS7B01G325700 chr6B 80.672 119 15 7 142 255 716575173 716575288 4.830000e-13 86.1
33 TraesCS7B01G325700 chr2B 76.000 200 25 19 44 231 118318818 118319006 6.250000e-12 82.4
34 TraesCS7B01G325700 chr2D 91.304 46 4 0 2218 2263 61757248 61757293 2.260000e-06 63.9
35 TraesCS7B01G325700 chr5D 97.059 34 1 0 2299 2332 495896303 495896336 1.050000e-04 58.4
36 TraesCS7B01G325700 chr4D 100.000 28 0 0 744 771 80469914 80469941 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G325700 chr7B 578383932 578386654 2722 True 5029.0 5029 100.0000 1 2723 1 chr7B.!!$R2 2722
1 TraesCS7B01G325700 chr7B 578293578 578294325 747 True 490.0 490 78.8920 1648 2390 1 chr7B.!!$R1 742
2 TraesCS7B01G325700 chr7D 535905876 535907594 1718 True 1133.5 1341 90.7520 1 1725 2 chr7D.!!$R1 1724
3 TraesCS7B01G325700 chr7A 617434247 617436992 2745 False 511.6 941 89.0144 1 2176 5 chr7A.!!$F2 2175

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
758 782 1.045407 AACGTACTCCCTCTGTTGCA 58.955 50.0 0.0 0.0 0.0 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2517 3296 0.027979 CGAAATGAATGCGCGTGGAT 59.972 50.0 8.43 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.845391 ATTTCCCTTCTTTTCACGAACAA 57.155 34.783 0.00 0.00 0.00 2.83
93 94 7.391148 ACATTTTTCGTATACAGCAGGAATT 57.609 32.000 3.32 0.00 0.00 2.17
308 328 8.338259 ACATTTCGCTGTATGATATGAAACTTC 58.662 33.333 0.00 0.00 31.71 3.01
309 329 6.510746 TTCGCTGTATGATATGAAACTTCG 57.489 37.500 0.00 0.00 0.00 3.79
377 397 6.380995 TCTCAACATGTCACAAACATTATGC 58.619 36.000 0.00 0.00 46.73 3.14
392 412 8.382130 CAAACATTATGCTTAAAATGCGTGAAT 58.618 29.630 0.00 0.00 36.72 2.57
432 452 2.478894 ACATGTTTTTCGAGCGGTACAG 59.521 45.455 0.00 0.00 0.00 2.74
487 507 6.800892 CCACTCAAAAACCAACATTTTGTTTG 59.199 34.615 10.46 8.86 44.32 2.93
547 567 7.668525 TTTTTGAAATGTTGGTACGGTTTTT 57.331 28.000 0.00 0.00 0.00 1.94
618 638 9.409312 CATTTCTTTCACACTGCATTTACATTA 57.591 29.630 0.00 0.00 0.00 1.90
738 762 1.064979 TGTGACATCAGCATGCCATCT 60.065 47.619 15.66 0.00 34.76 2.90
740 764 3.208594 GTGACATCAGCATGCCATCTAA 58.791 45.455 15.66 0.00 34.76 2.10
741 765 3.003068 GTGACATCAGCATGCCATCTAAC 59.997 47.826 15.66 1.50 34.76 2.34
742 766 2.216046 ACATCAGCATGCCATCTAACG 58.784 47.619 15.66 0.00 34.76 3.18
743 767 2.216046 CATCAGCATGCCATCTAACGT 58.784 47.619 15.66 0.00 34.76 3.99
744 768 3.181466 ACATCAGCATGCCATCTAACGTA 60.181 43.478 15.66 0.00 34.76 3.57
745 769 2.821546 TCAGCATGCCATCTAACGTAC 58.178 47.619 15.66 0.00 34.76 3.67
746 770 2.430694 TCAGCATGCCATCTAACGTACT 59.569 45.455 15.66 0.00 34.76 2.73
747 771 2.797156 CAGCATGCCATCTAACGTACTC 59.203 50.000 15.66 0.00 0.00 2.59
749 773 2.755650 CATGCCATCTAACGTACTCCC 58.244 52.381 0.00 0.00 0.00 4.30
750 774 2.154567 TGCCATCTAACGTACTCCCT 57.845 50.000 0.00 0.00 0.00 4.20
751 775 2.029623 TGCCATCTAACGTACTCCCTC 58.970 52.381 0.00 0.00 0.00 4.30
752 776 2.308690 GCCATCTAACGTACTCCCTCT 58.691 52.381 0.00 0.00 0.00 3.69
753 777 2.034812 GCCATCTAACGTACTCCCTCTG 59.965 54.545 0.00 0.00 0.00 3.35
754 778 3.288964 CCATCTAACGTACTCCCTCTGT 58.711 50.000 0.00 0.00 0.00 3.41
755 779 3.700038 CCATCTAACGTACTCCCTCTGTT 59.300 47.826 0.00 0.00 0.00 3.16
756 780 4.440250 CCATCTAACGTACTCCCTCTGTTG 60.440 50.000 0.00 0.00 0.00 3.33
757 781 2.490903 TCTAACGTACTCCCTCTGTTGC 59.509 50.000 0.00 0.00 0.00 4.17
758 782 1.045407 AACGTACTCCCTCTGTTGCA 58.955 50.000 0.00 0.00 0.00 4.08
759 783 1.045407 ACGTACTCCCTCTGTTGCAA 58.955 50.000 0.00 0.00 0.00 4.08
760 784 1.414919 ACGTACTCCCTCTGTTGCAAA 59.585 47.619 0.00 0.00 0.00 3.68
761 785 2.038557 ACGTACTCCCTCTGTTGCAAAT 59.961 45.455 0.00 0.00 0.00 2.32
762 786 3.074412 CGTACTCCCTCTGTTGCAAATT 58.926 45.455 0.00 0.00 0.00 1.82
763 787 4.250464 CGTACTCCCTCTGTTGCAAATTA 58.750 43.478 0.00 0.00 0.00 1.40
764 788 4.092968 CGTACTCCCTCTGTTGCAAATTAC 59.907 45.833 0.00 0.00 0.00 1.89
765 789 4.373156 ACTCCCTCTGTTGCAAATTACT 57.627 40.909 0.00 0.00 0.00 2.24
766 790 4.327680 ACTCCCTCTGTTGCAAATTACTC 58.672 43.478 0.00 0.00 0.00 2.59
767 791 3.334691 TCCCTCTGTTGCAAATTACTCG 58.665 45.455 0.00 0.00 0.00 4.18
768 792 3.074412 CCCTCTGTTGCAAATTACTCGT 58.926 45.455 0.00 0.00 0.00 4.18
769 793 3.125316 CCCTCTGTTGCAAATTACTCGTC 59.875 47.826 0.00 0.00 0.00 4.20
770 794 3.181530 CCTCTGTTGCAAATTACTCGTCG 60.182 47.826 0.00 0.00 0.00 5.12
771 795 3.386486 TCTGTTGCAAATTACTCGTCGT 58.614 40.909 0.00 0.00 0.00 4.34
772 796 3.183574 TCTGTTGCAAATTACTCGTCGTG 59.816 43.478 0.00 0.00 0.00 4.35
773 797 2.222213 TGTTGCAAATTACTCGTCGTGG 59.778 45.455 0.00 0.00 0.00 4.94
774 798 2.157834 TGCAAATTACTCGTCGTGGT 57.842 45.000 0.00 0.00 0.00 4.16
775 799 2.485903 TGCAAATTACTCGTCGTGGTT 58.514 42.857 0.00 0.00 0.00 3.67
776 800 2.873472 TGCAAATTACTCGTCGTGGTTT 59.127 40.909 0.00 0.00 0.00 3.27
777 801 4.056740 TGCAAATTACTCGTCGTGGTTTA 58.943 39.130 0.00 0.00 0.00 2.01
778 802 4.150980 TGCAAATTACTCGTCGTGGTTTAG 59.849 41.667 0.00 0.00 0.00 1.85
779 803 4.435121 GCAAATTACTCGTCGTGGTTTAGG 60.435 45.833 0.00 0.00 0.00 2.69
780 804 4.525912 AATTACTCGTCGTGGTTTAGGT 57.474 40.909 0.00 0.00 0.00 3.08
781 805 3.559238 TTACTCGTCGTGGTTTAGGTC 57.441 47.619 0.00 0.00 0.00 3.85
782 806 1.321474 ACTCGTCGTGGTTTAGGTCA 58.679 50.000 0.00 0.00 0.00 4.02
783 807 1.682854 ACTCGTCGTGGTTTAGGTCAA 59.317 47.619 0.00 0.00 0.00 3.18
784 808 2.101249 ACTCGTCGTGGTTTAGGTCAAA 59.899 45.455 0.00 0.00 0.00 2.69
785 809 3.125316 CTCGTCGTGGTTTAGGTCAAAA 58.875 45.455 0.00 0.00 0.00 2.44
786 810 3.125316 TCGTCGTGGTTTAGGTCAAAAG 58.875 45.455 0.00 0.00 0.00 2.27
787 811 3.125316 CGTCGTGGTTTAGGTCAAAAGA 58.875 45.455 0.00 0.00 0.00 2.52
788 812 3.183775 CGTCGTGGTTTAGGTCAAAAGAG 59.816 47.826 0.00 0.00 0.00 2.85
789 813 3.497262 GTCGTGGTTTAGGTCAAAAGAGG 59.503 47.826 0.00 0.00 0.00 3.69
790 814 2.812011 CGTGGTTTAGGTCAAAAGAGGG 59.188 50.000 0.00 0.00 0.00 4.30
791 815 3.495453 CGTGGTTTAGGTCAAAAGAGGGA 60.495 47.826 0.00 0.00 0.00 4.20
792 816 4.072839 GTGGTTTAGGTCAAAAGAGGGAG 58.927 47.826 0.00 0.00 0.00 4.30
793 817 3.720002 TGGTTTAGGTCAAAAGAGGGAGT 59.280 43.478 0.00 0.00 0.00 3.85
794 818 4.909088 TGGTTTAGGTCAAAAGAGGGAGTA 59.091 41.667 0.00 0.00 0.00 2.59
795 819 5.012768 TGGTTTAGGTCAAAAGAGGGAGTAG 59.987 44.000 0.00 0.00 0.00 2.57
796 820 5.012871 GGTTTAGGTCAAAAGAGGGAGTAGT 59.987 44.000 0.00 0.00 0.00 2.73
898 922 2.234300 TCCAACAGGAACACGTCTTC 57.766 50.000 0.00 0.00 0.00 2.87
932 956 3.450115 GGTCTCTGTCCCCGACCG 61.450 72.222 0.00 0.00 38.00 4.79
933 957 2.675772 GTCTCTGTCCCCGACCGT 60.676 66.667 0.00 0.00 0.00 4.83
934 958 1.377725 GTCTCTGTCCCCGACCGTA 60.378 63.158 0.00 0.00 0.00 4.02
935 959 1.077930 TCTCTGTCCCCGACCGTAG 60.078 63.158 0.00 0.00 0.00 3.51
966 993 2.631545 GGGAGCCGCTTCTATAAACCTA 59.368 50.000 0.00 0.00 0.00 3.08
967 994 3.261137 GGGAGCCGCTTCTATAAACCTAT 59.739 47.826 0.00 0.00 0.00 2.57
1142 1181 1.064296 CGTACAAGGCGAGCGAGAT 59.936 57.895 0.00 0.00 0.00 2.75
1157 1196 1.000993 AGATGGAGCTCTGGGACGT 59.999 57.895 14.64 0.00 0.00 4.34
1603 1648 0.030773 GATACTGCTCGACATGGCGA 59.969 55.000 24.69 24.69 38.74 5.54
1681 1747 1.659098 GAAAGTTAGACGATGGCACGG 59.341 52.381 12.66 0.27 37.61 4.94
1688 1754 3.803082 CGATGGCACGGCAGTTGG 61.803 66.667 0.00 0.00 0.00 3.77
1695 1761 1.821759 CACGGCAGTTGGTTGGACA 60.822 57.895 0.00 0.00 0.00 4.02
1708 1774 4.659480 GGACAGTTCCACGCGTTA 57.341 55.556 10.22 0.00 42.30 3.18
1808 2554 9.653287 TCGAAGTCAACTAAAAGATCAACATAT 57.347 29.630 0.00 0.00 0.00 1.78
1854 2600 3.956744 AGGGAATAAGAGCAACTCCAAC 58.043 45.455 0.00 0.00 0.00 3.77
1855 2601 3.330701 AGGGAATAAGAGCAACTCCAACA 59.669 43.478 0.00 0.00 0.00 3.33
1861 2607 7.172361 GGAATAAGAGCAACTCCAACATAGATC 59.828 40.741 0.00 0.00 0.00 2.75
1880 2627 1.539388 TCATCAATCGCCCACAAACAC 59.461 47.619 0.00 0.00 0.00 3.32
1889 2636 0.036164 CCCACAAACACCTGGATCGA 59.964 55.000 0.00 0.00 0.00 3.59
1896 2643 2.403252 ACACCTGGATCGAATGGTTC 57.597 50.000 0.00 0.00 0.00 3.62
1919 2666 6.743110 TCGAACAAATTTTGTCATCCAATGA 58.257 32.000 14.80 1.48 44.59 2.57
1937 2684 4.664150 ATGACGGTCACCAAAATTGTTT 57.336 36.364 13.92 0.00 0.00 2.83
1958 2705 4.123497 TCATTGGTCTGGATGTACGAAG 57.877 45.455 0.00 0.00 0.00 3.79
1964 2711 3.118738 GGTCTGGATGTACGAAGTTCCAT 60.119 47.826 0.00 0.00 43.08 3.41
1965 2712 3.865745 GTCTGGATGTACGAAGTTCCATG 59.134 47.826 0.00 0.00 43.08 3.66
1997 2744 2.007576 CTTAGGGGAGGTTTGGGGG 58.992 63.158 0.00 0.00 0.00 5.40
2032 2779 4.778415 CGTCAGACTCCGGCACCG 62.778 72.222 1.02 1.02 39.44 4.94
2035 2782 4.778415 CAGACTCCGGCACCGTCG 62.778 72.222 8.49 0.88 37.81 5.12
2056 2803 0.616395 CCCACCAAAATACCCCACCC 60.616 60.000 0.00 0.00 0.00 4.61
2060 2807 1.147399 ACCAAAATACCCCACCCGAAA 59.853 47.619 0.00 0.00 0.00 3.46
2064 2811 0.847758 AATACCCCACCCGAAACCCT 60.848 55.000 0.00 0.00 0.00 4.34
2117 2896 3.318539 GACACCGACGTCGCTGCTA 62.319 63.158 31.73 0.00 38.18 3.49
2125 2904 2.388232 CGTCGCTGCTAAACCACCC 61.388 63.158 0.00 0.00 0.00 4.61
2189 2968 2.332654 CGCTTACCCACCTTGGCAC 61.333 63.158 0.00 0.00 35.79 5.01
2191 2970 1.373435 CTTACCCACCTTGGCACGA 59.627 57.895 0.00 0.00 35.79 4.35
2192 2971 0.035439 CTTACCCACCTTGGCACGAT 60.035 55.000 0.00 0.00 35.79 3.73
2197 2976 1.302431 CACCTTGGCACGATCCACA 60.302 57.895 0.00 0.00 35.50 4.17
2201 2980 1.238439 CTTGGCACGATCCACAGTTT 58.762 50.000 0.00 0.00 35.50 2.66
2204 2983 1.271325 TGGCACGATCCACAGTTTCAT 60.271 47.619 0.00 0.00 0.00 2.57
2207 2986 2.009774 CACGATCCACAGTTTCATCCC 58.990 52.381 0.00 0.00 0.00 3.85
2234 3013 4.564110 GGCGCCCAGGTACCATCC 62.564 72.222 18.11 1.65 0.00 3.51
2242 3021 1.458967 AGGTACCATCCGCCCCTAC 60.459 63.158 15.94 0.00 0.00 3.18
2256 3035 4.944372 CTACCGCCGCCGTCCATC 62.944 72.222 0.00 0.00 0.00 3.51
2261 3040 3.896133 GCCGCCGTCCATCGTAGA 61.896 66.667 0.00 0.00 45.75 2.59
2273 3052 5.235516 GTCCATCGTAGACTTTGAAGGAAA 58.764 41.667 3.11 0.00 42.51 3.13
2276 3055 5.107065 CCATCGTAGACTTTGAAGGAAACAC 60.107 44.000 0.00 0.00 42.51 3.32
2281 3060 3.815401 AGACTTTGAAGGAAACACGATGG 59.185 43.478 0.00 0.00 0.00 3.51
2286 3065 1.606668 GAAGGAAACACGATGGTTGCA 59.393 47.619 9.21 0.00 37.90 4.08
2289 3068 3.620488 AGGAAACACGATGGTTGCATAT 58.380 40.909 9.21 0.00 37.90 1.78
2293 3072 2.899976 ACACGATGGTTGCATATTCGA 58.100 42.857 13.52 0.00 0.00 3.71
2294 3073 3.466836 ACACGATGGTTGCATATTCGAT 58.533 40.909 13.52 1.98 0.00 3.59
2311 3090 4.760530 TCGATGAAGGAGGATGAATTGT 57.239 40.909 0.00 0.00 0.00 2.71
2320 3099 4.703575 AGGAGGATGAATTGTTGTGTGATG 59.296 41.667 0.00 0.00 0.00 3.07
2322 3101 3.119743 AGGATGAATTGTTGTGTGATGCG 60.120 43.478 0.00 0.00 0.00 4.73
2328 3107 1.098869 TGTTGTGTGATGCGTGGTTT 58.901 45.000 0.00 0.00 0.00 3.27
2330 3109 0.248825 TTGTGTGATGCGTGGTTTGC 60.249 50.000 0.00 0.00 0.00 3.68
2332 3111 1.825622 TGTGATGCGTGGTTTGCCA 60.826 52.632 0.00 0.00 43.73 4.92
2347 3126 5.041287 GGTTTGCCAAAAGTGTAGAGTTTC 58.959 41.667 0.00 0.00 34.09 2.78
2354 3133 5.010012 CCAAAAGTGTAGAGTTTCAAGGCAT 59.990 40.000 0.00 0.00 0.00 4.40
2373 3152 3.515630 CATGAAGCATACGTGTCACTCT 58.484 45.455 0.00 0.00 0.00 3.24
2375 3154 4.776795 TGAAGCATACGTGTCACTCTTA 57.223 40.909 0.00 0.00 0.00 2.10
2382 3161 3.728076 ACGTGTCACTCTTAAAGCTCA 57.272 42.857 0.65 0.00 0.00 4.26
2386 3165 6.220930 ACGTGTCACTCTTAAAGCTCATAAA 58.779 36.000 0.65 0.00 0.00 1.40
2390 3169 9.548208 GTGTCACTCTTAAAGCTCATAAATTTC 57.452 33.333 0.00 0.00 0.00 2.17
2391 3170 8.730680 TGTCACTCTTAAAGCTCATAAATTTCC 58.269 33.333 0.00 0.00 0.00 3.13
2392 3171 8.951243 GTCACTCTTAAAGCTCATAAATTTCCT 58.049 33.333 0.00 0.00 0.00 3.36
2424 3203 7.832503 AAAAAGTGCATAATCACTATTTGGC 57.167 32.000 0.00 0.00 45.77 4.52
2425 3204 6.780457 AAAGTGCATAATCACTATTTGGCT 57.220 33.333 0.00 0.00 45.77 4.75
2426 3205 5.762825 AGTGCATAATCACTATTTGGCTG 57.237 39.130 0.00 0.00 44.77 4.85
2427 3206 5.439721 AGTGCATAATCACTATTTGGCTGA 58.560 37.500 0.00 0.00 44.77 4.26
2428 3207 5.887598 AGTGCATAATCACTATTTGGCTGAA 59.112 36.000 0.00 0.00 44.77 3.02
2429 3208 5.973565 GTGCATAATCACTATTTGGCTGAAC 59.026 40.000 0.00 0.00 34.29 3.18
2430 3209 5.067674 TGCATAATCACTATTTGGCTGAACC 59.932 40.000 0.00 0.00 39.84 3.62
2431 3210 5.751680 CATAATCACTATTTGGCTGAACCG 58.248 41.667 0.00 0.00 43.94 4.44
2432 3211 3.627395 ATCACTATTTGGCTGAACCGA 57.373 42.857 0.00 0.00 43.94 4.69
2433 3212 2.972625 TCACTATTTGGCTGAACCGAG 58.027 47.619 0.00 0.00 43.94 4.63
2434 3213 1.398390 CACTATTTGGCTGAACCGAGC 59.602 52.381 0.00 0.00 43.94 5.03
2435 3214 0.652592 CTATTTGGCTGAACCGAGCG 59.347 55.000 0.00 0.00 43.94 5.03
2436 3215 0.742990 TATTTGGCTGAACCGAGCGG 60.743 55.000 7.48 7.48 43.94 5.52
2448 3227 4.500116 GAGCGGCCGGTCTCTCAC 62.500 72.222 41.82 21.48 39.31 3.51
2450 3229 4.148825 GCGGCCGGTCTCTCACAT 62.149 66.667 29.38 0.00 0.00 3.21
2451 3230 2.202797 CGGCCGGTCTCTCACATG 60.203 66.667 20.10 0.00 0.00 3.21
2452 3231 2.512515 GGCCGGTCTCTCACATGC 60.513 66.667 1.90 0.00 0.00 4.06
2453 3232 2.265739 GCCGGTCTCTCACATGCA 59.734 61.111 1.90 0.00 0.00 3.96
2454 3233 1.153289 GCCGGTCTCTCACATGCAT 60.153 57.895 1.90 0.00 0.00 3.96
2455 3234 1.434622 GCCGGTCTCTCACATGCATG 61.435 60.000 25.09 25.09 0.00 4.06
2456 3235 1.434622 CCGGTCTCTCACATGCATGC 61.435 60.000 26.53 11.82 0.00 4.06
2457 3236 0.741927 CGGTCTCTCACATGCATGCA 60.742 55.000 26.53 25.04 0.00 3.96
2458 3237 1.676746 GGTCTCTCACATGCATGCAT 58.323 50.000 27.46 27.46 37.08 3.96
2459 3238 2.804212 CGGTCTCTCACATGCATGCATA 60.804 50.000 31.73 16.54 34.91 3.14
2460 3239 3.409570 GGTCTCTCACATGCATGCATAT 58.590 45.455 31.73 20.24 34.91 1.78
2461 3240 3.436015 GGTCTCTCACATGCATGCATATC 59.564 47.826 31.73 12.15 34.91 1.63
2462 3241 3.436015 GTCTCTCACATGCATGCATATCC 59.564 47.826 31.73 10.83 34.91 2.59
2463 3242 2.747989 CTCTCACATGCATGCATATCCC 59.252 50.000 31.73 0.00 34.91 3.85
2464 3243 2.374170 TCTCACATGCATGCATATCCCT 59.626 45.455 31.73 8.26 34.91 4.20
2465 3244 2.747989 CTCACATGCATGCATATCCCTC 59.252 50.000 31.73 0.00 34.91 4.30
2466 3245 2.106857 TCACATGCATGCATATCCCTCA 59.893 45.455 31.73 9.77 34.91 3.86
2467 3246 2.888414 CACATGCATGCATATCCCTCAA 59.112 45.455 31.73 0.55 34.91 3.02
2468 3247 3.057526 CACATGCATGCATATCCCTCAAG 60.058 47.826 31.73 18.32 34.91 3.02
2469 3248 3.154710 CATGCATGCATATCCCTCAAGT 58.845 45.455 31.73 4.38 34.91 3.16
2470 3249 2.578786 TGCATGCATATCCCTCAAGTG 58.421 47.619 18.46 0.00 0.00 3.16
2471 3250 1.268899 GCATGCATATCCCTCAAGTGC 59.731 52.381 14.21 0.00 36.39 4.40
2474 3253 2.578786 TGCATATCCCTCAAGTGCATG 58.421 47.619 0.00 0.00 40.51 4.06
2475 3254 2.092267 TGCATATCCCTCAAGTGCATGT 60.092 45.455 0.00 0.00 40.51 3.21
2476 3255 2.292569 GCATATCCCTCAAGTGCATGTG 59.707 50.000 0.00 0.00 35.93 3.21
2477 3256 2.715749 TATCCCTCAAGTGCATGTGG 57.284 50.000 0.00 0.00 34.48 4.17
2478 3257 0.682209 ATCCCTCAAGTGCATGTGGC 60.682 55.000 3.34 0.00 45.13 5.01
2487 3266 2.567569 GCATGTGGCATGCGTTCA 59.432 55.556 16.69 10.82 43.97 3.18
2488 3267 1.802715 GCATGTGGCATGCGTTCAC 60.803 57.895 16.69 14.57 43.97 3.18
2489 3268 1.580437 CATGTGGCATGCGTTCACA 59.420 52.632 24.28 24.28 44.12 3.58
2490 3269 0.730155 CATGTGGCATGCGTTCACAC 60.730 55.000 24.47 19.71 43.03 3.82
2491 3270 0.890542 ATGTGGCATGCGTTCACACT 60.891 50.000 24.47 14.10 43.03 3.55
2492 3271 1.081906 GTGGCATGCGTTCACACTG 60.082 57.895 17.44 0.00 0.00 3.66
2493 3272 2.260154 TGGCATGCGTTCACACTGG 61.260 57.895 12.44 0.00 0.00 4.00
2494 3273 2.260869 GGCATGCGTTCACACTGGT 61.261 57.895 12.44 0.00 0.00 4.00
2495 3274 1.654220 GCATGCGTTCACACTGGTT 59.346 52.632 0.00 0.00 0.00 3.67
2496 3275 0.871722 GCATGCGTTCACACTGGTTA 59.128 50.000 0.00 0.00 0.00 2.85
2497 3276 1.399727 GCATGCGTTCACACTGGTTAC 60.400 52.381 0.00 0.00 0.00 2.50
2498 3277 2.143122 CATGCGTTCACACTGGTTACT 58.857 47.619 0.00 0.00 0.00 2.24
2499 3278 2.319136 TGCGTTCACACTGGTTACTT 57.681 45.000 0.00 0.00 0.00 2.24
2500 3279 2.634600 TGCGTTCACACTGGTTACTTT 58.365 42.857 0.00 0.00 0.00 2.66
2501 3280 3.794717 TGCGTTCACACTGGTTACTTTA 58.205 40.909 0.00 0.00 0.00 1.85
2502 3281 4.382291 TGCGTTCACACTGGTTACTTTAT 58.618 39.130 0.00 0.00 0.00 1.40
2503 3282 4.817464 TGCGTTCACACTGGTTACTTTATT 59.183 37.500 0.00 0.00 0.00 1.40
2504 3283 5.297278 TGCGTTCACACTGGTTACTTTATTT 59.703 36.000 0.00 0.00 0.00 1.40
2505 3284 5.849604 GCGTTCACACTGGTTACTTTATTTC 59.150 40.000 0.00 0.00 0.00 2.17
2506 3285 6.512091 GCGTTCACACTGGTTACTTTATTTCA 60.512 38.462 0.00 0.00 0.00 2.69
2507 3286 7.069569 CGTTCACACTGGTTACTTTATTTCAG 58.930 38.462 0.00 0.00 0.00 3.02
2508 3287 7.042321 CGTTCACACTGGTTACTTTATTTCAGA 60.042 37.037 0.00 0.00 0.00 3.27
2509 3288 8.617809 GTTCACACTGGTTACTTTATTTCAGAA 58.382 33.333 0.00 0.00 0.00 3.02
2510 3289 8.740123 TCACACTGGTTACTTTATTTCAGAAA 57.260 30.769 0.00 0.00 0.00 2.52
2511 3290 9.179909 TCACACTGGTTACTTTATTTCAGAAAA 57.820 29.630 0.00 0.00 0.00 2.29
2512 3291 9.796120 CACACTGGTTACTTTATTTCAGAAAAA 57.204 29.630 0.00 0.00 0.00 1.94
2530 3309 3.609103 AAAATAGATCCACGCGCATTC 57.391 42.857 5.73 0.00 0.00 2.67
2531 3310 2.238942 AATAGATCCACGCGCATTCA 57.761 45.000 5.73 0.00 0.00 2.57
2532 3311 2.462456 ATAGATCCACGCGCATTCAT 57.538 45.000 5.73 0.00 0.00 2.57
2533 3312 2.238942 TAGATCCACGCGCATTCATT 57.761 45.000 5.73 0.00 0.00 2.57
2534 3313 1.382522 AGATCCACGCGCATTCATTT 58.617 45.000 5.73 0.00 0.00 2.32
2535 3314 1.331756 AGATCCACGCGCATTCATTTC 59.668 47.619 5.73 0.00 0.00 2.17
2536 3315 0.027979 ATCCACGCGCATTCATTTCG 59.972 50.000 5.73 0.00 0.00 3.46
2537 3316 1.583451 CCACGCGCATTCATTTCGG 60.583 57.895 5.73 0.00 0.00 4.30
2538 3317 1.583451 CACGCGCATTCATTTCGGG 60.583 57.895 5.73 0.00 41.07 5.14
2539 3318 2.024588 CGCGCATTCATTTCGGGG 59.975 61.111 8.75 0.00 33.43 5.73
2540 3319 2.760159 CGCGCATTCATTTCGGGGT 61.760 57.895 8.75 0.00 33.43 4.95
2541 3320 1.510844 GCGCATTCATTTCGGGGTT 59.489 52.632 0.30 0.00 0.00 4.11
2542 3321 0.108851 GCGCATTCATTTCGGGGTTT 60.109 50.000 0.30 0.00 0.00 3.27
2543 3322 1.671556 GCGCATTCATTTCGGGGTTTT 60.672 47.619 0.30 0.00 0.00 2.43
2544 3323 2.416162 GCGCATTCATTTCGGGGTTTTA 60.416 45.455 0.30 0.00 0.00 1.52
2545 3324 3.839293 CGCATTCATTTCGGGGTTTTAA 58.161 40.909 0.00 0.00 0.00 1.52
2546 3325 4.238514 CGCATTCATTTCGGGGTTTTAAA 58.761 39.130 0.00 0.00 0.00 1.52
2547 3326 4.867608 CGCATTCATTTCGGGGTTTTAAAT 59.132 37.500 0.00 0.00 0.00 1.40
2548 3327 5.350091 CGCATTCATTTCGGGGTTTTAAATT 59.650 36.000 0.00 0.00 0.00 1.82
2549 3328 6.128418 CGCATTCATTTCGGGGTTTTAAATTT 60.128 34.615 0.00 0.00 0.00 1.82
2550 3329 7.572168 CGCATTCATTTCGGGGTTTTAAATTTT 60.572 33.333 0.00 0.00 0.00 1.82
2551 3330 8.079203 GCATTCATTTCGGGGTTTTAAATTTTT 58.921 29.630 0.00 0.00 0.00 1.94
2572 3351 5.600908 TTTTAAAGTCATACAGCACGGTC 57.399 39.130 0.00 0.00 0.00 4.79
2573 3352 1.710013 AAAGTCATACAGCACGGTCG 58.290 50.000 0.00 0.00 0.00 4.79
2574 3353 0.108804 AAGTCATACAGCACGGTCGG 60.109 55.000 0.00 0.00 0.00 4.79
2575 3354 0.963856 AGTCATACAGCACGGTCGGA 60.964 55.000 0.00 0.00 0.00 4.55
2576 3355 0.108992 GTCATACAGCACGGTCGGAA 60.109 55.000 0.00 0.00 0.00 4.30
2577 3356 0.821517 TCATACAGCACGGTCGGAAT 59.178 50.000 0.00 0.00 0.00 3.01
2578 3357 1.206132 TCATACAGCACGGTCGGAATT 59.794 47.619 0.00 0.00 0.00 2.17
2579 3358 1.593006 CATACAGCACGGTCGGAATTC 59.407 52.381 0.00 0.00 0.00 2.17
2580 3359 0.604073 TACAGCACGGTCGGAATTCA 59.396 50.000 7.93 0.00 0.00 2.57
2581 3360 0.670546 ACAGCACGGTCGGAATTCAG 60.671 55.000 7.93 3.12 0.00 3.02
2582 3361 0.389817 CAGCACGGTCGGAATTCAGA 60.390 55.000 7.93 5.92 0.00 3.27
2583 3362 0.537188 AGCACGGTCGGAATTCAGAT 59.463 50.000 11.54 0.00 0.00 2.90
2584 3363 0.931005 GCACGGTCGGAATTCAGATC 59.069 55.000 11.54 10.04 0.00 2.75
2585 3364 1.571919 CACGGTCGGAATTCAGATCC 58.428 55.000 11.54 12.64 0.00 3.36
2595 3374 4.974591 GGAATTCAGATCCGTTTTCACTG 58.025 43.478 7.93 0.00 0.00 3.66
2596 3375 4.455877 GGAATTCAGATCCGTTTTCACTGT 59.544 41.667 7.93 0.00 0.00 3.55
2597 3376 5.048713 GGAATTCAGATCCGTTTTCACTGTT 60.049 40.000 7.93 0.00 0.00 3.16
2598 3377 4.811555 TTCAGATCCGTTTTCACTGTTG 57.188 40.909 0.00 0.00 0.00 3.33
2599 3378 3.138304 TCAGATCCGTTTTCACTGTTGG 58.862 45.455 0.00 0.00 0.00 3.77
2600 3379 3.138304 CAGATCCGTTTTCACTGTTGGA 58.862 45.455 0.00 0.00 0.00 3.53
2601 3380 3.563808 CAGATCCGTTTTCACTGTTGGAA 59.436 43.478 0.00 0.00 0.00 3.53
2602 3381 3.564225 AGATCCGTTTTCACTGTTGGAAC 59.436 43.478 0.00 0.00 0.00 3.62
2603 3382 2.993937 TCCGTTTTCACTGTTGGAACT 58.006 42.857 0.00 0.00 0.00 3.01
2604 3383 2.940410 TCCGTTTTCACTGTTGGAACTC 59.060 45.455 0.00 0.00 0.00 3.01
2605 3384 2.943033 CCGTTTTCACTGTTGGAACTCT 59.057 45.455 0.00 0.00 0.00 3.24
2606 3385 3.002348 CCGTTTTCACTGTTGGAACTCTC 59.998 47.826 0.00 0.00 0.00 3.20
2607 3386 3.302480 CGTTTTCACTGTTGGAACTCTCG 60.302 47.826 0.00 0.00 0.00 4.04
2608 3387 1.865865 TTCACTGTTGGAACTCTCGC 58.134 50.000 0.00 0.00 0.00 5.03
2609 3388 0.318699 TCACTGTTGGAACTCTCGCG 60.319 55.000 0.00 0.00 0.00 5.87
2610 3389 0.318699 CACTGTTGGAACTCTCGCGA 60.319 55.000 9.26 9.26 0.00 5.87
2611 3390 0.318784 ACTGTTGGAACTCTCGCGAC 60.319 55.000 3.71 0.00 0.00 5.19
2612 3391 1.337817 CTGTTGGAACTCTCGCGACG 61.338 60.000 3.71 1.11 0.00 5.12
2613 3392 1.081641 GTTGGAACTCTCGCGACGA 60.082 57.895 3.71 6.39 0.00 4.20
2624 3403 2.341318 TCGCGACGAGATCTTTGAAA 57.659 45.000 3.71 0.00 0.00 2.69
2625 3404 1.983605 TCGCGACGAGATCTTTGAAAC 59.016 47.619 3.71 0.00 0.00 2.78
2626 3405 1.986378 CGCGACGAGATCTTTGAAACT 59.014 47.619 0.00 0.00 0.00 2.66
2627 3406 3.120095 TCGCGACGAGATCTTTGAAACTA 60.120 43.478 3.71 0.00 0.00 2.24
2628 3407 3.238570 CGCGACGAGATCTTTGAAACTAG 59.761 47.826 0.00 0.00 0.00 2.57
2629 3408 4.413087 GCGACGAGATCTTTGAAACTAGA 58.587 43.478 0.00 0.00 0.00 2.43
2630 3409 5.038033 GCGACGAGATCTTTGAAACTAGAT 58.962 41.667 0.00 0.00 33.92 1.98
2631 3410 5.172411 GCGACGAGATCTTTGAAACTAGATC 59.828 44.000 0.00 0.00 44.54 2.75
2632 3411 5.683743 CGACGAGATCTTTGAAACTAGATCC 59.316 44.000 0.00 1.33 45.05 3.36
2633 3412 5.908341 ACGAGATCTTTGAAACTAGATCCC 58.092 41.667 0.00 0.00 45.05 3.85
2634 3413 5.422331 ACGAGATCTTTGAAACTAGATCCCA 59.578 40.000 0.00 0.00 45.05 4.37
2635 3414 5.751028 CGAGATCTTTGAAACTAGATCCCAC 59.249 44.000 0.00 1.82 45.05 4.61
2636 3415 6.627087 AGATCTTTGAAACTAGATCCCACA 57.373 37.500 0.00 0.00 45.05 4.17
2637 3416 7.205515 AGATCTTTGAAACTAGATCCCACAT 57.794 36.000 0.00 0.00 45.05 3.21
2638 3417 7.052873 AGATCTTTGAAACTAGATCCCACATG 58.947 38.462 0.00 0.00 45.05 3.21
2639 3418 5.500234 TCTTTGAAACTAGATCCCACATGG 58.500 41.667 0.00 0.00 0.00 3.66
2654 3433 5.657826 CCACATGGGTATGTTTTGATGAA 57.342 39.130 0.00 0.00 45.01 2.57
2655 3434 6.035368 CCACATGGGTATGTTTTGATGAAA 57.965 37.500 0.00 0.00 45.01 2.69
2656 3435 6.642430 CCACATGGGTATGTTTTGATGAAAT 58.358 36.000 0.00 0.00 45.01 2.17
2657 3436 7.104939 CCACATGGGTATGTTTTGATGAAATT 58.895 34.615 0.00 0.00 45.01 1.82
2658 3437 7.607223 CCACATGGGTATGTTTTGATGAAATTT 59.393 33.333 0.00 0.00 45.01 1.82
2659 3438 9.001542 CACATGGGTATGTTTTGATGAAATTTT 57.998 29.630 0.00 0.00 45.01 1.82
2660 3439 9.571816 ACATGGGTATGTTTTGATGAAATTTTT 57.428 25.926 0.00 0.00 45.01 1.94
2689 3468 9.740239 AATGTCAACTTTGATGATATATTGTGC 57.260 29.630 0.00 0.00 39.73 4.57
2690 3469 8.278729 TGTCAACTTTGATGATATATTGTGCA 57.721 30.769 0.00 0.00 39.73 4.57
2691 3470 8.738106 TGTCAACTTTGATGATATATTGTGCAA 58.262 29.630 0.00 0.00 39.73 4.08
2692 3471 9.013490 GTCAACTTTGATGATATATTGTGCAAC 57.987 33.333 0.00 0.00 39.73 4.17
2693 3472 8.959548 TCAACTTTGATGATATATTGTGCAACT 58.040 29.630 0.00 0.00 32.01 3.16
2696 3475 9.394767 ACTTTGATGATATATTGTGCAACTACA 57.605 29.630 0.00 0.00 38.04 2.74
2710 3489 7.915508 TGTGCAACTACATTACTACATAATGC 58.084 34.615 6.58 0.00 45.18 3.56
2711 3490 7.550906 TGTGCAACTACATTACTACATAATGCA 59.449 33.333 6.58 0.00 45.18 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.417884 TGTTCGTGAAAAGAAGGGAAATAAATT 58.582 29.630 0.00 0.00 34.28 1.82
308 328 5.387279 ACAAATATCCGCACAGTTTAAACG 58.613 37.500 12.54 10.03 0.00 3.60
309 329 7.631915 AAACAAATATCCGCACAGTTTAAAC 57.368 32.000 10.47 10.47 0.00 2.01
318 338 5.885881 TCCAATGTAAACAAATATCCGCAC 58.114 37.500 0.00 0.00 0.00 5.34
455 475 4.523173 TGTTGGTTTTTGAGTGGTGTAACA 59.477 37.500 0.00 0.00 39.98 2.41
456 476 5.061920 TGTTGGTTTTTGAGTGGTGTAAC 57.938 39.130 0.00 0.00 0.00 2.50
487 507 7.975616 TGACATTTAGAAAAAGCTATGCAATCC 59.024 33.333 0.00 0.00 0.00 3.01
625 645 8.918961 TTTTTGTAACAAAGTGTTCATAGTGG 57.081 30.769 0.00 0.00 40.22 4.00
715 735 1.426621 GCATGCTGATGTCACACGG 59.573 57.895 11.37 0.00 31.50 4.94
738 762 2.241160 TGCAACAGAGGGAGTACGTTA 58.759 47.619 0.00 0.00 0.00 3.18
740 764 1.045407 TTGCAACAGAGGGAGTACGT 58.955 50.000 0.00 0.00 0.00 3.57
741 765 2.163818 TTTGCAACAGAGGGAGTACG 57.836 50.000 0.00 0.00 0.00 3.67
742 766 5.246307 AGTAATTTGCAACAGAGGGAGTAC 58.754 41.667 0.00 0.00 0.00 2.73
743 767 5.488341 GAGTAATTTGCAACAGAGGGAGTA 58.512 41.667 0.00 0.00 0.00 2.59
744 768 4.327680 GAGTAATTTGCAACAGAGGGAGT 58.672 43.478 0.00 0.00 0.00 3.85
745 769 3.372206 CGAGTAATTTGCAACAGAGGGAG 59.628 47.826 0.00 0.00 0.00 4.30
746 770 3.244422 ACGAGTAATTTGCAACAGAGGGA 60.244 43.478 0.00 0.00 0.00 4.20
747 771 3.074412 ACGAGTAATTTGCAACAGAGGG 58.926 45.455 0.00 0.00 0.00 4.30
749 773 3.428870 ACGACGAGTAATTTGCAACAGAG 59.571 43.478 0.00 0.00 0.00 3.35
750 774 3.183574 CACGACGAGTAATTTGCAACAGA 59.816 43.478 0.00 0.00 0.00 3.41
751 775 3.469629 CACGACGAGTAATTTGCAACAG 58.530 45.455 0.00 0.00 0.00 3.16
752 776 2.222213 CCACGACGAGTAATTTGCAACA 59.778 45.455 0.00 0.00 0.00 3.33
753 777 2.222445 ACCACGACGAGTAATTTGCAAC 59.778 45.455 0.00 0.00 0.00 4.17
754 778 2.485903 ACCACGACGAGTAATTTGCAA 58.514 42.857 0.00 0.00 0.00 4.08
755 779 2.157834 ACCACGACGAGTAATTTGCA 57.842 45.000 0.00 0.00 0.00 4.08
756 780 3.531262 AAACCACGACGAGTAATTTGC 57.469 42.857 0.00 0.00 0.00 3.68
757 781 4.687483 ACCTAAACCACGACGAGTAATTTG 59.313 41.667 0.00 0.00 0.00 2.32
758 782 4.886579 ACCTAAACCACGACGAGTAATTT 58.113 39.130 0.00 0.00 0.00 1.82
759 783 4.022068 TGACCTAAACCACGACGAGTAATT 60.022 41.667 0.00 0.00 0.00 1.40
760 784 3.507233 TGACCTAAACCACGACGAGTAAT 59.493 43.478 0.00 0.00 0.00 1.89
761 785 2.884012 TGACCTAAACCACGACGAGTAA 59.116 45.455 0.00 0.00 0.00 2.24
762 786 2.503331 TGACCTAAACCACGACGAGTA 58.497 47.619 0.00 0.00 0.00 2.59
763 787 1.321474 TGACCTAAACCACGACGAGT 58.679 50.000 0.00 0.00 0.00 4.18
764 788 2.427232 TTGACCTAAACCACGACGAG 57.573 50.000 0.00 0.00 0.00 4.18
765 789 2.886862 TTTGACCTAAACCACGACGA 57.113 45.000 0.00 0.00 0.00 4.20
766 790 3.125316 TCTTTTGACCTAAACCACGACG 58.875 45.455 0.00 0.00 0.00 5.12
767 791 3.497262 CCTCTTTTGACCTAAACCACGAC 59.503 47.826 0.00 0.00 0.00 4.34
768 792 3.495453 CCCTCTTTTGACCTAAACCACGA 60.495 47.826 0.00 0.00 0.00 4.35
769 793 2.812011 CCCTCTTTTGACCTAAACCACG 59.188 50.000 0.00 0.00 0.00 4.94
770 794 4.072839 CTCCCTCTTTTGACCTAAACCAC 58.927 47.826 0.00 0.00 0.00 4.16
771 795 3.720002 ACTCCCTCTTTTGACCTAAACCA 59.280 43.478 0.00 0.00 0.00 3.67
772 796 4.368565 ACTCCCTCTTTTGACCTAAACC 57.631 45.455 0.00 0.00 0.00 3.27
773 797 6.111669 ACTACTCCCTCTTTTGACCTAAAC 57.888 41.667 0.00 0.00 0.00 2.01
774 798 5.247792 GGACTACTCCCTCTTTTGACCTAAA 59.752 44.000 0.00 0.00 0.00 1.85
775 799 4.776308 GGACTACTCCCTCTTTTGACCTAA 59.224 45.833 0.00 0.00 0.00 2.69
776 800 4.351127 GGACTACTCCCTCTTTTGACCTA 58.649 47.826 0.00 0.00 0.00 3.08
777 801 3.174779 GGACTACTCCCTCTTTTGACCT 58.825 50.000 0.00 0.00 0.00 3.85
778 802 2.094130 CGGACTACTCCCTCTTTTGACC 60.094 54.545 0.00 0.00 31.93 4.02
779 803 2.824341 TCGGACTACTCCCTCTTTTGAC 59.176 50.000 0.00 0.00 31.93 3.18
780 804 2.824341 GTCGGACTACTCCCTCTTTTGA 59.176 50.000 0.00 0.00 31.93 2.69
781 805 2.415625 CGTCGGACTACTCCCTCTTTTG 60.416 54.545 6.57 0.00 31.93 2.44
782 806 1.817447 CGTCGGACTACTCCCTCTTTT 59.183 52.381 6.57 0.00 31.93 2.27
783 807 1.004044 TCGTCGGACTACTCCCTCTTT 59.996 52.381 6.57 0.00 31.93 2.52
784 808 0.617413 TCGTCGGACTACTCCCTCTT 59.383 55.000 6.57 0.00 31.93 2.85
785 809 0.107752 GTCGTCGGACTACTCCCTCT 60.108 60.000 6.57 0.00 40.15 3.69
786 810 0.392193 TGTCGTCGGACTACTCCCTC 60.392 60.000 13.12 0.00 43.79 4.30
787 811 0.037303 TTGTCGTCGGACTACTCCCT 59.963 55.000 13.12 0.00 43.79 4.20
788 812 0.883833 TTTGTCGTCGGACTACTCCC 59.116 55.000 13.12 0.00 43.79 4.30
789 813 1.731750 GCTTTGTCGTCGGACTACTCC 60.732 57.143 13.12 0.00 43.79 3.85
790 814 1.615502 GCTTTGTCGTCGGACTACTC 58.384 55.000 13.12 0.00 43.79 2.59
791 815 0.243095 GGCTTTGTCGTCGGACTACT 59.757 55.000 13.12 0.00 43.79 2.57
792 816 1.069378 CGGCTTTGTCGTCGGACTAC 61.069 60.000 6.57 6.21 43.79 2.73
793 817 1.210931 CGGCTTTGTCGTCGGACTA 59.789 57.895 6.57 0.00 43.79 2.59
794 818 2.049433 CGGCTTTGTCGTCGGACT 60.049 61.111 6.57 0.00 43.79 3.85
795 819 2.355481 ACGGCTTTGTCGTCGGAC 60.355 61.111 0.00 0.00 40.97 4.79
796 820 2.355363 CACGGCTTTGTCGTCGGA 60.355 61.111 0.00 0.00 40.97 4.55
967 994 9.137459 TGATGGTTTGAAGATTGGTAAAACTTA 57.863 29.630 0.00 0.00 29.32 2.24
1055 1094 2.874648 GATGCCGTCCATGGTGCTGA 62.875 60.000 12.58 0.00 33.29 4.26
1129 1168 2.811101 CTCCATCTCGCTCGCCTT 59.189 61.111 0.00 0.00 0.00 4.35
1142 1181 2.203640 ACACGTCCCAGAGCTCCA 60.204 61.111 10.93 0.00 0.00 3.86
1150 1189 3.680786 CTCCTCGCACACGTCCCA 61.681 66.667 0.00 0.00 41.18 4.37
1157 1196 3.838271 GGCCGATCTCCTCGCACA 61.838 66.667 0.00 0.00 46.25 4.57
1246 1285 4.093952 GGCCGTCTCGTCGTCGAA 62.094 66.667 6.19 0.00 45.61 3.71
1416 1461 3.771160 GTCCCGGACACCTGCGAT 61.771 66.667 13.05 0.00 31.75 4.58
1668 1734 3.240134 AACTGCCGTGCCATCGTCT 62.240 57.895 0.00 0.00 0.00 4.18
1681 1747 0.668535 GGAACTGTCCAACCAACTGC 59.331 55.000 0.00 0.00 44.26 4.40
1830 2576 5.359194 TGGAGTTGCTCTTATTCCCTAAG 57.641 43.478 0.00 0.00 38.58 2.18
1831 2577 5.013704 TGTTGGAGTTGCTCTTATTCCCTAA 59.986 40.000 0.00 0.00 0.00 2.69
1843 2589 5.363562 TGATGATCTATGTTGGAGTTGCT 57.636 39.130 0.00 0.00 0.00 3.91
1854 2600 3.667360 TGTGGGCGATTGATGATCTATG 58.333 45.455 0.00 0.00 32.30 2.23
1855 2601 4.356405 TTGTGGGCGATTGATGATCTAT 57.644 40.909 0.00 0.00 32.30 1.98
1861 2607 1.402720 GGTGTTTGTGGGCGATTGATG 60.403 52.381 0.00 0.00 0.00 3.07
1889 2636 6.423604 GGATGACAAAATTTGTTCGAACCATT 59.576 34.615 24.78 18.80 45.52 3.16
1919 2666 4.664150 ATGAAACAATTTTGGTGACCGT 57.336 36.364 0.00 0.00 0.00 4.83
1926 2673 5.609423 TCCAGACCAATGAAACAATTTTGG 58.391 37.500 3.30 3.30 43.41 3.28
1937 2684 3.513912 ACTTCGTACATCCAGACCAATGA 59.486 43.478 0.00 0.00 0.00 2.57
1947 2694 4.201685 CGTTTCATGGAACTTCGTACATCC 60.202 45.833 14.94 0.00 0.00 3.51
1964 2711 2.500229 CCTAAGCTTGGTTCCGTTTCA 58.500 47.619 9.86 0.00 0.00 2.69
1965 2712 1.810755 CCCTAAGCTTGGTTCCGTTTC 59.189 52.381 9.86 0.00 0.00 2.78
1997 2744 2.987547 TGGTGGACGTCCGGACTC 60.988 66.667 30.92 24.56 39.43 3.36
2010 2757 2.258591 CCGGAGTCTGACGTGGTG 59.741 66.667 0.00 0.00 0.00 4.17
2032 2779 1.317431 GGGTATTTTGGTGGGCCGAC 61.317 60.000 9.83 9.83 37.67 4.79
2035 2782 1.079438 TGGGGTATTTTGGTGGGCC 59.921 57.895 0.00 0.00 0.00 5.80
2076 2823 2.440817 GGTACATGGGGACGAGGGG 61.441 68.421 0.00 0.00 0.00 4.79
2079 2826 1.520666 GTGGGTACATGGGGACGAG 59.479 63.158 0.00 0.00 0.00 4.18
2080 2827 2.352821 CGTGGGTACATGGGGACGA 61.353 63.158 0.00 0.00 0.00 4.20
2106 2885 1.666872 GGTGGTTTAGCAGCGACGT 60.667 57.895 0.00 0.00 0.00 4.34
2113 2892 4.354162 GCCCGGGGTGGTTTAGCA 62.354 66.667 25.28 0.00 35.15 3.49
2167 2946 0.899720 CCAAGGTGGGTAAGCGTCTA 59.100 55.000 0.00 0.00 32.67 2.59
2176 2955 2.351276 GATCGTGCCAAGGTGGGT 59.649 61.111 0.00 0.00 38.19 4.51
2177 2956 2.438434 GGATCGTGCCAAGGTGGG 60.438 66.667 0.00 0.00 38.19 4.61
2189 2968 1.290203 CGGGATGAAACTGTGGATCG 58.710 55.000 0.00 0.00 0.00 3.69
2191 2970 1.285280 TCCGGGATGAAACTGTGGAT 58.715 50.000 0.00 0.00 0.00 3.41
2192 2971 1.209504 GATCCGGGATGAAACTGTGGA 59.790 52.381 15.70 0.00 0.00 4.02
2197 2976 1.830145 CGGGATCCGGGATGAAACT 59.170 57.895 15.70 0.00 44.15 2.66
2250 3029 4.451629 TCCTTCAAAGTCTACGATGGAC 57.548 45.455 0.00 0.00 30.41 4.02
2253 3032 5.388475 CGTGTTTCCTTCAAAGTCTACGATG 60.388 44.000 0.00 0.00 0.00 3.84
2255 3034 4.046462 CGTGTTTCCTTCAAAGTCTACGA 58.954 43.478 0.00 0.00 0.00 3.43
2256 3035 4.046462 TCGTGTTTCCTTCAAAGTCTACG 58.954 43.478 0.00 0.00 0.00 3.51
2258 3037 4.994852 CCATCGTGTTTCCTTCAAAGTCTA 59.005 41.667 0.00 0.00 0.00 2.59
2261 3040 3.551846 ACCATCGTGTTTCCTTCAAAGT 58.448 40.909 0.00 0.00 0.00 2.66
2273 3052 2.899976 TCGAATATGCAACCATCGTGT 58.100 42.857 12.26 0.00 32.85 4.49
2276 3055 4.377738 CCTTCATCGAATATGCAACCATCG 60.378 45.833 0.00 0.00 32.85 3.84
2281 3060 4.380531 TCCTCCTTCATCGAATATGCAAC 58.619 43.478 0.00 0.00 0.00 4.17
2286 3065 7.456725 ACAATTCATCCTCCTTCATCGAATAT 58.543 34.615 0.00 0.00 0.00 1.28
2289 3068 5.102953 ACAATTCATCCTCCTTCATCGAA 57.897 39.130 0.00 0.00 0.00 3.71
2293 3072 5.184479 CACACAACAATTCATCCTCCTTCAT 59.816 40.000 0.00 0.00 0.00 2.57
2294 3073 4.520111 CACACAACAATTCATCCTCCTTCA 59.480 41.667 0.00 0.00 0.00 3.02
2311 3090 0.248825 GCAAACCACGCATCACACAA 60.249 50.000 0.00 0.00 0.00 3.33
2328 3107 4.338118 CCTTGAAACTCTACACTTTTGGCA 59.662 41.667 0.00 0.00 0.00 4.92
2330 3109 4.338118 TGCCTTGAAACTCTACACTTTTGG 59.662 41.667 0.00 0.00 0.00 3.28
2332 3111 5.827797 TCATGCCTTGAAACTCTACACTTTT 59.172 36.000 0.00 0.00 0.00 2.27
2340 3119 2.867624 TGCTTCATGCCTTGAAACTCT 58.132 42.857 1.44 0.00 43.64 3.24
2341 3120 3.863142 ATGCTTCATGCCTTGAAACTC 57.137 42.857 1.44 0.00 43.64 3.01
2347 3126 1.739466 ACACGTATGCTTCATGCCTTG 59.261 47.619 0.00 0.00 42.00 3.61
2354 3133 3.660501 AAGAGTGACACGTATGCTTCA 57.339 42.857 0.00 0.00 0.00 3.02
2359 3138 5.161358 TGAGCTTTAAGAGTGACACGTATG 58.839 41.667 0.00 0.00 0.00 2.39
2364 3143 9.548208 GAAATTTATGAGCTTTAAGAGTGACAC 57.452 33.333 0.00 0.00 0.00 3.67
2365 3144 8.730680 GGAAATTTATGAGCTTTAAGAGTGACA 58.269 33.333 0.00 0.00 0.00 3.58
2398 3177 9.023967 GCCAAATAGTGATTATGCACTTTTTAG 57.976 33.333 10.87 6.92 46.42 1.85
2399 3178 8.748412 AGCCAAATAGTGATTATGCACTTTTTA 58.252 29.630 10.87 0.00 46.42 1.52
2400 3179 7.546667 CAGCCAAATAGTGATTATGCACTTTTT 59.453 33.333 2.09 4.98 46.42 1.94
2401 3180 7.037438 CAGCCAAATAGTGATTATGCACTTTT 58.963 34.615 2.09 0.00 46.42 2.27
2402 3181 6.377996 TCAGCCAAATAGTGATTATGCACTTT 59.622 34.615 2.09 0.00 46.42 2.66
2403 3182 5.887598 TCAGCCAAATAGTGATTATGCACTT 59.112 36.000 2.09 0.00 46.42 3.16
2404 3183 9.025425 GGTTCAGCCAAATAGTGATTATGCACT 62.025 40.741 0.00 0.00 43.43 4.40
2405 3184 5.756195 TCAGCCAAATAGTGATTATGCAC 57.244 39.130 0.00 0.00 39.05 4.57
2406 3185 5.067674 GGTTCAGCCAAATAGTGATTATGCA 59.932 40.000 0.00 0.00 37.17 3.96
2407 3186 5.523369 GGTTCAGCCAAATAGTGATTATGC 58.477 41.667 0.00 0.00 37.17 3.14
2408 3187 5.527214 TCGGTTCAGCCAAATAGTGATTATG 59.473 40.000 0.00 0.00 36.97 1.90
2409 3188 5.680619 TCGGTTCAGCCAAATAGTGATTAT 58.319 37.500 0.00 0.00 36.97 1.28
2410 3189 5.092554 TCGGTTCAGCCAAATAGTGATTA 57.907 39.130 0.00 0.00 36.97 1.75
2411 3190 3.941483 CTCGGTTCAGCCAAATAGTGATT 59.059 43.478 0.00 0.00 36.97 2.57
2412 3191 3.535561 CTCGGTTCAGCCAAATAGTGAT 58.464 45.455 0.00 0.00 36.97 3.06
2413 3192 2.935238 GCTCGGTTCAGCCAAATAGTGA 60.935 50.000 0.00 0.00 36.97 3.41
2414 3193 1.398390 GCTCGGTTCAGCCAAATAGTG 59.602 52.381 0.00 0.00 36.97 2.74
2415 3194 1.739067 GCTCGGTTCAGCCAAATAGT 58.261 50.000 0.00 0.00 36.97 2.12
2416 3195 0.652592 CGCTCGGTTCAGCCAAATAG 59.347 55.000 0.00 0.00 35.84 1.73
2417 3196 0.742990 CCGCTCGGTTCAGCCAAATA 60.743 55.000 0.00 0.00 35.84 1.40
2418 3197 2.040544 CCGCTCGGTTCAGCCAAAT 61.041 57.895 0.00 0.00 35.84 2.32
2419 3198 2.668212 CCGCTCGGTTCAGCCAAA 60.668 61.111 0.00 0.00 35.84 3.28
2431 3210 4.500116 GTGAGAGACCGGCCGCTC 62.500 72.222 22.85 21.82 34.24 5.03
2433 3212 4.148825 ATGTGAGAGACCGGCCGC 62.149 66.667 22.85 7.25 0.00 6.53
2434 3213 2.202797 CATGTGAGAGACCGGCCG 60.203 66.667 21.04 21.04 0.00 6.13
2435 3214 2.512515 GCATGTGAGAGACCGGCC 60.513 66.667 0.00 0.00 0.00 6.13
2436 3215 1.153289 ATGCATGTGAGAGACCGGC 60.153 57.895 0.00 0.00 0.00 6.13
2437 3216 1.434622 GCATGCATGTGAGAGACCGG 61.435 60.000 26.79 0.00 0.00 5.28
2438 3217 0.741927 TGCATGCATGTGAGAGACCG 60.742 55.000 26.79 0.00 0.00 4.79
2439 3218 1.676746 ATGCATGCATGTGAGAGACC 58.323 50.000 31.74 8.94 35.03 3.85
2440 3219 3.436015 GGATATGCATGCATGTGAGAGAC 59.564 47.826 37.43 20.04 37.82 3.36
2441 3220 3.558533 GGGATATGCATGCATGTGAGAGA 60.559 47.826 37.43 19.86 37.82 3.10
2442 3221 2.747989 GGGATATGCATGCATGTGAGAG 59.252 50.000 37.43 1.59 37.82 3.20
2443 3222 2.374170 AGGGATATGCATGCATGTGAGA 59.626 45.455 37.43 21.28 37.82 3.27
2444 3223 2.747989 GAGGGATATGCATGCATGTGAG 59.252 50.000 37.43 2.78 37.82 3.51
2445 3224 2.106857 TGAGGGATATGCATGCATGTGA 59.893 45.455 37.43 22.01 37.82 3.58
2446 3225 2.510613 TGAGGGATATGCATGCATGTG 58.489 47.619 37.43 5.68 37.82 3.21
2447 3226 2.963599 TGAGGGATATGCATGCATGT 57.036 45.000 37.43 32.70 37.82 3.21
2448 3227 3.057526 CACTTGAGGGATATGCATGCATG 60.058 47.826 37.43 22.70 37.82 4.06
2449 3228 3.154710 CACTTGAGGGATATGCATGCAT 58.845 45.455 33.92 33.92 40.19 3.96
2450 3229 2.578786 CACTTGAGGGATATGCATGCA 58.421 47.619 25.04 25.04 0.00 3.96
2451 3230 1.268899 GCACTTGAGGGATATGCATGC 59.731 52.381 11.82 11.82 36.30 4.06
2452 3231 2.578786 TGCACTTGAGGGATATGCATG 58.421 47.619 10.16 0.00 41.18 4.06
2455 3234 2.292569 CACATGCACTTGAGGGATATGC 59.707 50.000 0.00 0.00 36.81 3.14
2456 3235 2.882761 CCACATGCACTTGAGGGATATG 59.117 50.000 0.00 0.00 0.00 1.78
2457 3236 2.750807 GCCACATGCACTTGAGGGATAT 60.751 50.000 6.00 0.00 40.77 1.63
2458 3237 1.408683 GCCACATGCACTTGAGGGATA 60.409 52.381 6.00 0.00 40.77 2.59
2459 3238 0.682209 GCCACATGCACTTGAGGGAT 60.682 55.000 6.00 0.00 40.77 3.85
2460 3239 1.303561 GCCACATGCACTTGAGGGA 60.304 57.895 6.00 0.00 40.77 4.20
2461 3240 3.281240 GCCACATGCACTTGAGGG 58.719 61.111 6.00 3.01 40.77 4.30
2470 3249 1.802715 GTGAACGCATGCCACATGC 60.803 57.895 19.97 19.97 41.35 4.06
2471 3250 0.730155 GTGTGAACGCATGCCACATG 60.730 55.000 24.67 9.35 41.97 3.21
2472 3251 0.890542 AGTGTGAACGCATGCCACAT 60.891 50.000 24.67 14.36 41.97 3.21
2473 3252 1.525765 AGTGTGAACGCATGCCACA 60.526 52.632 20.11 20.11 38.34 4.17
2474 3253 1.081906 CAGTGTGAACGCATGCCAC 60.082 57.895 13.15 14.88 0.00 5.01
2475 3254 2.260154 CCAGTGTGAACGCATGCCA 61.260 57.895 13.15 0.84 0.00 4.92
2476 3255 1.795170 AACCAGTGTGAACGCATGCC 61.795 55.000 13.15 0.00 0.00 4.40
2477 3256 0.871722 TAACCAGTGTGAACGCATGC 59.128 50.000 7.91 7.91 0.00 4.06
2478 3257 2.143122 AGTAACCAGTGTGAACGCATG 58.857 47.619 0.00 0.00 0.00 4.06
2479 3258 2.543777 AGTAACCAGTGTGAACGCAT 57.456 45.000 0.00 0.00 0.00 4.73
2480 3259 2.319136 AAGTAACCAGTGTGAACGCA 57.681 45.000 0.00 0.00 0.00 5.24
2481 3260 5.352643 AATAAAGTAACCAGTGTGAACGC 57.647 39.130 0.00 0.00 0.00 4.84
2482 3261 6.950545 TGAAATAAAGTAACCAGTGTGAACG 58.049 36.000 0.00 0.00 0.00 3.95
2483 3262 8.149973 TCTGAAATAAAGTAACCAGTGTGAAC 57.850 34.615 0.00 0.00 0.00 3.18
2484 3263 8.740123 TTCTGAAATAAAGTAACCAGTGTGAA 57.260 30.769 0.00 0.00 0.00 3.18
2485 3264 8.740123 TTTCTGAAATAAAGTAACCAGTGTGA 57.260 30.769 0.00 0.00 0.00 3.58
2486 3265 9.796120 TTTTTCTGAAATAAAGTAACCAGTGTG 57.204 29.630 3.31 0.00 0.00 3.82
2509 3288 3.376859 TGAATGCGCGTGGATCTATTTTT 59.623 39.130 8.43 0.00 0.00 1.94
2510 3289 2.942376 TGAATGCGCGTGGATCTATTTT 59.058 40.909 8.43 0.00 0.00 1.82
2511 3290 2.560504 TGAATGCGCGTGGATCTATTT 58.439 42.857 8.43 0.00 0.00 1.40
2512 3291 2.238942 TGAATGCGCGTGGATCTATT 57.761 45.000 8.43 0.00 0.00 1.73
2513 3292 2.462456 ATGAATGCGCGTGGATCTAT 57.538 45.000 8.43 0.00 0.00 1.98
2514 3293 2.238942 AATGAATGCGCGTGGATCTA 57.761 45.000 8.43 0.00 0.00 1.98
2515 3294 1.331756 GAAATGAATGCGCGTGGATCT 59.668 47.619 8.43 0.00 0.00 2.75
2516 3295 1.746760 GAAATGAATGCGCGTGGATC 58.253 50.000 8.43 0.00 0.00 3.36
2517 3296 0.027979 CGAAATGAATGCGCGTGGAT 59.972 50.000 8.43 0.00 0.00 3.41
2518 3297 1.423450 CGAAATGAATGCGCGTGGA 59.577 52.632 8.43 0.00 0.00 4.02
2519 3298 1.583451 CCGAAATGAATGCGCGTGG 60.583 57.895 8.43 0.00 0.00 4.94
2520 3299 1.583451 CCCGAAATGAATGCGCGTG 60.583 57.895 8.43 0.00 0.00 5.34
2521 3300 2.760159 CCCCGAAATGAATGCGCGT 61.760 57.895 8.43 0.00 0.00 6.01
2522 3301 2.024588 CCCCGAAATGAATGCGCG 59.975 61.111 0.00 0.00 0.00 6.86
2523 3302 0.108851 AAACCCCGAAATGAATGCGC 60.109 50.000 0.00 0.00 0.00 6.09
2524 3303 2.362169 AAAACCCCGAAATGAATGCG 57.638 45.000 0.00 0.00 0.00 4.73
2525 3304 6.735678 AATTTAAAACCCCGAAATGAATGC 57.264 33.333 0.00 0.00 0.00 3.56
2549 3328 5.333492 CGACCGTGCTGTATGACTTTAAAAA 60.333 40.000 0.00 0.00 0.00 1.94
2550 3329 4.150980 CGACCGTGCTGTATGACTTTAAAA 59.849 41.667 0.00 0.00 0.00 1.52
2551 3330 3.676172 CGACCGTGCTGTATGACTTTAAA 59.324 43.478 0.00 0.00 0.00 1.52
2552 3331 3.247442 CGACCGTGCTGTATGACTTTAA 58.753 45.455 0.00 0.00 0.00 1.52
2553 3332 2.416296 CCGACCGTGCTGTATGACTTTA 60.416 50.000 0.00 0.00 0.00 1.85
2554 3333 1.671850 CCGACCGTGCTGTATGACTTT 60.672 52.381 0.00 0.00 0.00 2.66
2555 3334 0.108804 CCGACCGTGCTGTATGACTT 60.109 55.000 0.00 0.00 0.00 3.01
2556 3335 0.963856 TCCGACCGTGCTGTATGACT 60.964 55.000 0.00 0.00 0.00 3.41
2557 3336 0.108992 TTCCGACCGTGCTGTATGAC 60.109 55.000 0.00 0.00 0.00 3.06
2558 3337 0.821517 ATTCCGACCGTGCTGTATGA 59.178 50.000 0.00 0.00 0.00 2.15
2559 3338 1.593006 GAATTCCGACCGTGCTGTATG 59.407 52.381 0.00 0.00 0.00 2.39
2560 3339 1.206132 TGAATTCCGACCGTGCTGTAT 59.794 47.619 2.27 0.00 0.00 2.29
2561 3340 0.604073 TGAATTCCGACCGTGCTGTA 59.396 50.000 2.27 0.00 0.00 2.74
2562 3341 0.670546 CTGAATTCCGACCGTGCTGT 60.671 55.000 2.27 0.00 0.00 4.40
2563 3342 0.389817 TCTGAATTCCGACCGTGCTG 60.390 55.000 2.27 0.00 0.00 4.41
2564 3343 0.537188 ATCTGAATTCCGACCGTGCT 59.463 50.000 2.27 0.00 0.00 4.40
2565 3344 0.931005 GATCTGAATTCCGACCGTGC 59.069 55.000 2.27 0.00 0.00 5.34
2566 3345 1.571919 GGATCTGAATTCCGACCGTG 58.428 55.000 2.27 0.00 0.00 4.94
2573 3352 4.455877 ACAGTGAAAACGGATCTGAATTCC 59.544 41.667 9.00 6.52 0.00 3.01
2574 3353 5.613358 ACAGTGAAAACGGATCTGAATTC 57.387 39.130 9.00 12.00 0.00 2.17
2575 3354 5.278463 CCAACAGTGAAAACGGATCTGAATT 60.278 40.000 9.00 2.31 0.00 2.17
2576 3355 4.216257 CCAACAGTGAAAACGGATCTGAAT 59.784 41.667 9.00 0.00 0.00 2.57
2577 3356 3.563808 CCAACAGTGAAAACGGATCTGAA 59.436 43.478 9.00 0.00 0.00 3.02
2578 3357 3.138304 CCAACAGTGAAAACGGATCTGA 58.862 45.455 9.00 0.00 0.00 3.27
2579 3358 3.138304 TCCAACAGTGAAAACGGATCTG 58.862 45.455 0.00 0.00 0.00 2.90
2580 3359 3.485463 TCCAACAGTGAAAACGGATCT 57.515 42.857 0.00 0.00 0.00 2.75
2581 3360 3.564225 AGTTCCAACAGTGAAAACGGATC 59.436 43.478 0.00 0.00 0.00 3.36
2582 3361 3.551846 AGTTCCAACAGTGAAAACGGAT 58.448 40.909 0.00 0.00 0.00 4.18
2583 3362 2.940410 GAGTTCCAACAGTGAAAACGGA 59.060 45.455 0.00 0.00 0.00 4.69
2584 3363 2.943033 AGAGTTCCAACAGTGAAAACGG 59.057 45.455 0.00 0.00 0.00 4.44
2585 3364 3.302480 CGAGAGTTCCAACAGTGAAAACG 60.302 47.826 0.00 0.00 0.00 3.60
2586 3365 3.546218 GCGAGAGTTCCAACAGTGAAAAC 60.546 47.826 0.00 0.00 0.00 2.43
2587 3366 2.612212 GCGAGAGTTCCAACAGTGAAAA 59.388 45.455 0.00 0.00 0.00 2.29
2588 3367 2.210116 GCGAGAGTTCCAACAGTGAAA 58.790 47.619 0.00 0.00 0.00 2.69
2589 3368 1.865865 GCGAGAGTTCCAACAGTGAA 58.134 50.000 0.00 0.00 0.00 3.18
2590 3369 0.318699 CGCGAGAGTTCCAACAGTGA 60.319 55.000 0.00 0.00 0.00 3.41
2591 3370 0.318699 TCGCGAGAGTTCCAACAGTG 60.319 55.000 3.71 0.00 34.84 3.66
2592 3371 0.318784 GTCGCGAGAGTTCCAACAGT 60.319 55.000 10.24 0.00 43.49 3.55
2593 3372 1.337817 CGTCGCGAGAGTTCCAACAG 61.338 60.000 10.24 0.00 43.49 3.16
2594 3373 1.371267 CGTCGCGAGAGTTCCAACA 60.371 57.895 10.24 0.00 43.49 3.33
2595 3374 1.081641 TCGTCGCGAGAGTTCCAAC 60.082 57.895 10.24 0.00 43.49 3.77
2596 3375 3.347168 TCGTCGCGAGAGTTCCAA 58.653 55.556 10.24 0.00 43.49 3.53
2605 3384 1.983605 GTTTCAAAGATCTCGTCGCGA 59.016 47.619 3.71 3.71 0.00 5.87
2606 3385 1.986378 AGTTTCAAAGATCTCGTCGCG 59.014 47.619 0.00 0.00 0.00 5.87
2607 3386 4.413087 TCTAGTTTCAAAGATCTCGTCGC 58.587 43.478 0.00 0.00 0.00 5.19
2608 3387 5.683743 GGATCTAGTTTCAAAGATCTCGTCG 59.316 44.000 11.05 0.00 44.94 5.12
2609 3388 5.980715 GGGATCTAGTTTCAAAGATCTCGTC 59.019 44.000 11.05 0.00 44.94 4.20
2610 3389 5.908341 GGGATCTAGTTTCAAAGATCTCGT 58.092 41.667 11.05 0.00 44.94 4.18
2612 3391 6.644347 TGTGGGATCTAGTTTCAAAGATCTC 58.356 40.000 11.05 8.38 45.96 2.75
2613 3392 6.627087 TGTGGGATCTAGTTTCAAAGATCT 57.373 37.500 11.05 0.00 44.94 2.75
2614 3393 6.261826 CCATGTGGGATCTAGTTTCAAAGATC 59.738 42.308 4.15 4.15 44.88 2.75
2615 3394 6.125029 CCATGTGGGATCTAGTTTCAAAGAT 58.875 40.000 0.00 0.00 40.01 2.40
2616 3395 5.500234 CCATGTGGGATCTAGTTTCAAAGA 58.500 41.667 0.00 0.00 40.01 2.52
2617 3396 5.824904 CCATGTGGGATCTAGTTTCAAAG 57.175 43.478 0.00 0.00 40.01 2.77
2632 3411 5.657826 TTCATCAAAACATACCCATGTGG 57.342 39.130 0.00 0.00 44.83 4.17
2633 3412 8.550710 AAATTTCATCAAAACATACCCATGTG 57.449 30.769 0.00 0.00 44.83 3.21
2663 3442 9.740239 GCACAATATATCATCAAAGTTGACATT 57.260 29.630 0.00 0.00 40.49 2.71
2664 3443 8.905850 TGCACAATATATCATCAAAGTTGACAT 58.094 29.630 0.00 0.00 40.49 3.06
2665 3444 8.278729 TGCACAATATATCATCAAAGTTGACA 57.721 30.769 0.00 0.00 40.49 3.58
2666 3445 9.013490 GTTGCACAATATATCATCAAAGTTGAC 57.987 33.333 0.00 0.00 40.49 3.18
2667 3446 8.959548 AGTTGCACAATATATCATCAAAGTTGA 58.040 29.630 0.00 0.00 42.14 3.18
2670 3449 9.394767 TGTAGTTGCACAATATATCATCAAAGT 57.605 29.630 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.