>input_sequence_70658
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-----------------------------------------------------------------------------AT-
GCAATCAGGCCGCGCGCCGCTGCGTCATACGAACGTCTCGTCGCGCCGCGCAATCAGCACCATGGACGGCATCACCGCCA
CGTCGTGCCGCTGCAGCAGCGTGGTGTTCGTGGGCAACATCCCGTACAAGGCGAGCGAGATGGAGCTCTGGGACGTGTGC
GAGGAGATCGGCCCCGTGGCGTCCCTCCGCGTGGCCGCCGACAAGGACACCGGCAGGCCCCGCGGCTTCGCCTTCTGCGA
GTACTTCGACGACGAGACGGCCCGCAGCGCCTGCCGCAACCTGCACGGCCACCCCCTCCACGGCCGCGCGCTCCGCGTCG
GCATCGCCGCACCGGA------GCAGCAGCAAGGGCGCCGGCGCGTCGGCGACGACGACCCGAACCTGCCCGTGGGCGTG
GAGGGCGCCACGCACGCCGCATCGCAGGTGTCCGGGACGCCCAGCGCCGCCGTGACGAGGTACCTGGCGGGGATGAGCCG
GCGCCAGCTGCGTGGGCTCCTGGACGCCGTGGCGATGGAGCCCGCGGAGTCCGTGGAGCGGGCGAAGCGGGAGTTCCGAG
GGCTCGCGACGTTAATCGAGCAGGCGGGGATACTGCTCGACATGGCGACCGCCAGTGACGCTGGTGCGGCTGGTAAGCGG
CCTGGC---------------------GGTGCACCGCCGAAGGTGAGAAAGTTAGACGATGGCACGGCAGTTGGTTGGAC
AGTTCCACGCGTTATC----------------------------------------------------------------
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----------------------------------------------------GTGTGCCGCTGA----------------
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>chr7B_1_TraesCS7B01G325700
TGTAAGGTTTTCTTTAATTTATTTCCCTTCTTTTCACGAACAAATGTCTATATTTTTCATATGCATTGTACATTTTTCGT
ATACAGCAGGAATTTTTTTT-ATAATAATTTCATATTTCTAAAATACATGATTAC-CATTCTTTTTTTGT-AAATATATG
TTTTCATGTCTACTTTTTTATG-CACATTGTACATTTTATGTATACATCTAAGAATTTTTTTA--TATGTTTAAATTTTT
AAATACATAATTTACT-------------TTTTTGAACATTTTTTTCAAATACACGTCGAAACATTTCGCTGTATGATAT
GAAACTTCGTTTAAACTGTGCGGATATTTGTTTACATTGGATAAATATTCTTTCTCAACATGTCACAAACATTATGCTTA
AAATGCGTGAATATTTTCTAAATGTAACGTACATGTTTTTCGAGCGGTACAGTTTTTTAATTACACGGACATTTTGTTAC
ACCACTCAAAAACCAACATTTTGTTTGGATTGCATAGCTTTTTCTAAATGTCACGTGCACATTTTTTGAAATGTTGGTAC
GGTTTTTTTTTTTTTTGCATGGTAGGAACATTTTTCTAAAACTAGAGCGAACATTTCTTTCACACTGCATTTACATTATT
AAATCCACTATGAACACTTTGTTACAAAAATTTACTAATTTATTATAACATGTGTATTTTGTACTGTCCCAAATATTAAA
AAATAAATAAAAAACC----GTGTGACATCAGCATGCCATCTAACGTACTCCCTCTGTTGCAAATTACTCGTCGTGGTTT
AGGTCAAAAGAGGGAGTAGTCCGACGACAAAGCCGTGCCCGAATACAACTGCCAGGGAAGAATGTTCTCGAAGACACGAG
CCGCCTGGAAGAAGTCCTCAATTCCAACAGGAACACGTCTTCTTACCGCCAATGTGCCGGTCTCTGTCCCCGACCGTAGG
TCG---GGCGCGGGAGCCGCTTCTATAAACCTATAAGTTTTACCAATCT-----------TCAAACCATCAAAACCAAT-
GCAATCAGGCCGCGCGCCGCTGCGTCATACGAACGTCTCGTCGCGCCGCGCAATCAGCACCATGGACGGCATCACCGCCA
CGTCGTGCCGCTGCAGCAGCGTGGTGTTCGTGGGCAACATCCCGTACAAGGCGAGCGAGATGGAGCTCTGGGACGTGTGC
GAGGAGATCGGCCCCGTGGCGTCCCTCCGCGTGGCCGCCGACAAGGACACCGGCAGGCCCCGCGGCTTCGCCTTCTGCGA
GTACTTCGACGACGAGACGGCCCGCAGCGCCTGCCGCAACCTGCACGGCCACCCCCTCCACGGCCGCGCGCTCCGCGTCG
GCATCGCCGCACCGGA------GCAGCAGCAAGGGCGCCGGCGCGTCGGCGACGACGACCCGAACCTGCCCGTGGGCGTG
GAGGGCGCCACGCACGCCGCATCGCAGGTGTCCGGGACGCCCAGCGCCGCCGTGACGAGGTACCTGGCGGGGATGAGCCG
GCGCCAGCTGCGTGGGCTCCTGGACGCCGTGGCGATGGAGCCCGCGGAGTCCGTGGAGCGGGCGAAGCGGGAGTTCCGAG
GGCTCGCGACGTTAATCGAGCAGGCGGGGATACTGCTCGACATGGCGACCGCCAGTGACGCTGGTGCGGCTGGTAAGCGG
CCTGGC---------------------GGTGCACCGCCGAAGGTGAGAAAGTTAGACGATGGCACGGCAGTTGGTTGGAC
AGTTCCACGCGTTATC----------------------------------------------------------------
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----------------------------------------------------GTGTGCCGCTGATGTTTGTTTTTAGGTA
ACTTTTATTTA---TTTAATTTTTTAAGTATACTATAAACA-AAATTTCGAAGTCAACTAAAAGATCAACATATAACTAT
GAAAAGAAACATAACCTTAGGGAATAAGAGCAACTCCAACATAGATCATCAA-TCGCCCACAAACACCTGGATCGAATGG
TTCGAACAAATTTTGTCATCCAATGACGGTCACCAAAATTGTTTCATTGGTCTGGATGTACGAAGTTCCATGAAACGGAA
CCAAGCTTAGGGGAGGTTTGGGGGAGTCCGGACGTCCACCACGTCAGACTCCGGCACCGTCGGCCCACCAAAATACCCCA
CCCGAAACCCTCCCCCCCCACCCCCCTCGTCCCCA--------------------------------TGTACCCACGGAC
ACCGACGTCGCTGCTAAACCACCCCGGGCACCGTCTAGGCCTTGTCGAACCTCCACCGCTCCAGCTAGACGCTTACCCAC
CTTGGCACGATCCACAGTTTCATCCCGGATCCCGCGGCGCCCAGGTACCATCCGCCCCTACCGCCGCCGTCCATCGTAGA
CTTTGAAGGAAACACGATGGTTGCATATTCGATGAAGGAGGATGAATTGTTGTGTGATGCGTGGTTTGCCAAAAGTGTAG
AGTTTCAAGGCATGAAGCATACGTGTCACTCTTAAAGCTCATAAATTTCCTAAAATCTAAAAAGTGCATAATCACTATTT
GGCTGAACCGAGCGGCCGGTCTCTCACATGCATGCATATCCCTCAAGTGCATGTGGCATGCGTTCACACTGGTTACTTTA
TTTCAGAAAAAATAGATCCACGCGCATTCATTTCGGGGTTTTAAATTTTTTTAAAGTCATACAGCACGGTCGGAATTCAG
ATCCGTTTTCACTGTTGGAACTCTCGCGACGAGATCTTTGAAACTAGATCCCACATGGGTATGTTTTGATGAAATTTTTT
CAATGTCAACTTTGATGATATATTGTGCAACTACATTACTACATAATGCAACTCTATTACT
>chr7D_1
TGTAAGGTTTTC-TTTATTTATTTCCCTTCTTTTCAATAACACATGTCTATATTTTTCATATGCATTGAACATTTTTCGT
ATACAGCAGGAATATTTTTTTGTCATAATTTCATATTTTTAAAATACATGATTAC-AATTCTTTTTTTGCAAAATATATG
TTTTCATGTATACTTTCTTCATACACATTGTACATTTAATGTATACATCTAAGAATTTTTTTATATATGTTTACATATTT
AAATACAGAATTTAATTTTTTCAAATAAATTTTTGAACATTTTTT-CAAATACATGTCGAAACATTTCTCTGTATGGTAT
GAAACTTTTTTTAAACTATGCGGATATTTGTTTACATTGGATAAATATTTTTTTCCAACATGTCACAAACATTATATGTA
AAATACGTGAACG-TTTCTAAATGTAACGTACATGTTTTTCGAGCGGTACAATTCTTTAATTACACGGACATTTATTTAC
ACCACTCAAAAACCAACATCTTGTTTAGATTGCATAGCTTTTTCTAAATGGCACGTGCACATGTTTTGAAATGTTGGTAC
G--------TTTTTTTGCATGGTAGGAACATTTTTCTAAAACTAGAGCGAACATTTCTTTCACACTGCATTTACATTTTT
AAATGCACGATGAACACTTTGTTACATAAATTTACTAATTTATTATAACATGTGTATTTAGTACTGTCCCAAATATTAAA
AAAAAAAGTAAAAAAAAAAAGTGTGACGTCAGCATGCCATCAACATAGTCGCTA--------------------------
--------------------CCGACGACAAAGCCGTGCCCGAATACAACTGCCAGGGAAGAATGTTCTCGAAGACACGAG
CCGCCTGGAACAAGTCCTCAATTCCAACAGGAACACGTCTTGTTACCGCCAATGTGCCGGTCTCTGTCCCCGACCTACCG
TAGGTCGGCGCGGGAGCCGCTTCTATAAACCT--AAGTTTTACCAATCT-----------TCAAACCATCAAAACCAATA
GCAATCAGGCCGCGCGCCGCTGCGTCATACGAACGTCTCGTCGCGCCGCGCAACCAGCACCATGGACGGCATCACCGCCA
CGTCGTGCCGCTGCAGCAGCGTGGTGTTCGTGGGCAACATCCCGTACCAGGCGAGCGAGAAGGAGCTCCGGGACGCGTGC
GAGGAGATCGGCCCCGTGGCGTCCCTCCGCGTGGCCACCGACAAAGACAACGGCAGGCCCCGCGGCTTCGCCTTCTGCGA
GTACCTCGACGACGAGACGGCCCGCAGCGCCTGCCGCAACCTGCACGGCCACCCCCTCCACGGCCGCGCGCTCCGCGTCG
GCATCGCCGCACCGGAGCAGCAGCAGCAGCAAGGGCGCCGGCGCGTCGGCGACGACGACCCGGACCTGCCCGTGGGCGTG
GAGGGCGCCACGCACGCCGCGTCGCAGGTGTCCGGGACGCCCAGCGCCGCCGTGACGAGGTACCTGGCGGGGTTGAGCCG
GCGCCAGCTGCGGGAGCTCCTGGACTCCGTGGCGATGGAGCCCGCGGAGTCCGTGGAGCGGGCGAAGCGAGAGTTCAGGG
GTCTCGCGACGTTAATCGAGCAGGCGGGGATACTGCTCGACATGGCGGCCGCAAGTGACGCCGGTGCCGCTGGTAAGCGC
CCCGGCAGTCTGCCGGAGTCGGGGCAGGGTGCACCGCCGAAGGTGAGAAAGTTGGACGATGGCACGTCAGTTCCTTGGAC
CGTCGCAGGCGTTGTTGCATGCCGCTGATG--------------------------------------------------
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>chr7A_1
TGTAAGGTTTTCTTTTATTTATTTCCCTTCTTTTCACAAACACATGTCTATATTTTTCATATGCATTGTACATTTTTCGT
ATACAGCAGGAATATTTTTTTATCATAATTTCATATTTTTAAAA--CATGATTACAAATTCTTTTTTTGCAAAATATATG
TTTTCATGTATACTTTTTTCATACACATTGTACATTTTATGTATACATCTAAGAATTTTCTTATATATGTTTAAA-----
-----------------------------------------TTTT-CAAATACATGTCGAAACATTTCTCTGTATGATAT
GAAACGTTTTTTAAACTATGCGGATATTTGCTTACATAGGATAAATATTTTTTTTCAACATGTCACAAACATTATGTTTA
AAATGCGTGAACATTTTCTAAATGTAACATACATGGTTTTCGAGCGGTACAATTTTTTAATTACACGGATATTTATTTAC
ACCACTAAAAAACGAACATTTTGATTAGATTGCATAGCTTTTTCCAAATGTCATGTGCACATTTTTTGAAAAGTTGGTAT
G--------TTTTTTTGAATGGTAGGAACATTTTTCTAAAAATAGAGCGAACATTTCTTTCACACTGCATTTACATTTTT
AAATGCACGATGAACACTTTGTTACAAAAAATTACTAATTTGTTATAACATGTGTATTTTGTACTGTCCCAAATATAAAA
AGAAAAAGAAAAAAAC----GTGTGCGATCAGCATGCCATCAACATAGTCGCTA--------------------------
--------------------CCGACGACAAAGCCGTGCCCGAATACAACTGCCAGGGAAGAATGTTCTCGAAGACACGAG
CCGCCTGGAAGAAGTCCTCAATTCCAACAGGAACACGTC---TTACCGCCAATGTGCCGGTCTCTGTCCCCGAC----CG
TAGGTCGGCGCGGGAGCCGCTTCTATAAACCT--AAGTTTCTACGAGCACTAATCTTCAATCAAGCCATCTAAACCAAGA
GCAATCCG------------------------------------GCCGCGCAACCAGCACCATGGACGACATCACCGCCA
CGTCGTGCCGCTGCAGCAGCGTGGTGTTCGTGGGCAACATCCCGTACCAGGCGAGCGGGGAGGAGCTCCGGGACGCGTGC
GAGGAGATCGGCCCCGTGGTTTCCCTCCGCGTGGCCGCCGACAAGGGCACCGGCAGGCCCCGCGGCTTCGCCTTCTGCGA
GTACCTCGACGACGAGACGGCCCGCAGCGCCTGCCGCAACCTGCACGGCCACCCGCTCCACGGTCGCGCGCTCCGCGTCG
GCATCGCCGCACCGG------AGCAGCAGCAAGGGTGCCGACGCGTCGGCGGCGACGACCCGAGCCTGCCCGTGGGCGTG
GAGGGCGCCGCGCACGCCGCGTCGCAGGTGTCCGGGACGCCCAGCGCCGCCGTGACGAGGTACCTGGCGGGGCTGAGCCG
GCGCCAGCTGCGTGAGTTCCTCGACGCCGTGGCGATGGAGCCCGCGGAGTCCGTGGAGCGGGCGAAGCGGGAGTTCAGAG
GGCTCGCGACGTTAATCGAGCAGGCGGGGATACTGCTCGACATGGCGGCCGCAAGCGACGCCGGTGCGGCTGGTAAGCGC
CCTGGCGGTCTGCCGGAGTCGGGGCGGGGTGCACCGCCGAAGGTGAGAAAGTTGGACGATGGCACGTCAGTTGCTTGGAC
CGTTGCAGGCGTTGTTGCATGCCGCTGATGGGTCAACTGTTTTATTTGTTTTCTAGGTAGGAGTAACTTCTAATTTTTCA
TCAAGTAGTATATGCAGAAATTTAGAACTCAACAACTAGGTCAACATAAGTACATAACTATGAAAATAAACATAACTCTA
AGTACATAACTATGAAAATAAACATAACTCTAGAGAATAACAAAAGCATTACATAGTATAACTAACGACTCACTAGTATG
CGAGTGCTCATACTTTTGTCCAGTGTTATGTCAAAACACTTGACAAAGACACCGCCCCGACCCCCACAAGCCCTACCCCT
AAGGCCTTGTTCGGTTAAACCTATCCTGGAGGGGATTGAAGAGGTTTGAAGGGAATTGGATGGGATTTTGACTTGTATGG
GATTTAGTCCACCCCAATCCACTTCAATCCCCTTCAGTTTTGTTGCGACCGAACAAGTCCTAAACGGAGTGCAAGAAAAA
AAACACTCTACAAACGGTTGGTACTTGACAAAACCTTGAAAACACGGGCAAAGAATTGGTCGCTCGGCAAAATCAGTGAT
ATGTGCCCTTCCTCGACGCAACTGGCAGAAGAGTGACAACGTGGTCTCATTTTCGGAATGCCTGTCAGACCGCCAAAGGT
GAGATTGTTGGAGGATGGCATGTCAGTTCCTTGGACAGTTCCAGGCGTTGTAGTGTGCCGCTGATGTTTGTTTTTAGGTA
ACTTTTAGTTTATTTTTTATTTTTCAAGTATACTATAAACAGAAATTTCGAAGTCAACTAAAAGATCAACATA--ACTAT
GAAAAGAAACATAACTATGGGGAATAAGTATCATCAG--------------A-TTGCCCACAAACATCTGAATCAGATGG
TTTGAACAAATTATGTCATCCAATGGTGATCATCAAAATTGTTACATTGGTCTAGACGTACGAAATTCCACTAAATGGAA
CCAAGCATAGGGGAGG-------------GGACGGCTACCACGTCAGACTCCGGCACCATCAGCCCACCAAAATACCCCA
CCTGGAGCCCCTTTTCCGCACTTCGT--------------------CCTCTTAATGTACTCTTTATATGCACCCACGGAC
ACCGCCATCGCCGTTGAACCACCTCGGGCACCGTCTAGGCCTTGTCGAACTTCCACCACTCTAGCCAGACGCTT------
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>chr7B_1648
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--------------------------------ACCGCCGAAGGTGAGCATGTTGGACCATGGCATGTCAGT-CCTTGGAT
GGTTCCAGGCGTTGTC----------------------------------------------------------------
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----------------------------------------------------TT-TGCCGTTGATGTTTGTTTTGAGGTA
ACTTTA----A---TTTAAATTTTCAAGTATAGTATAAACAAAAATTTAGAACTCAACTAAAAGATCAACACA--ACTAT
GAAAAGAAACATAACTCTAGGGAATAAGGGCAACTCCAATGTAGATAATCAAATCGCCCTCGAACATCTAGACTGGATGG
TTTGGACAGATTTTGTCATCCAATGGCGGTCATCAAAATTGTTCAATTGGTATAGATGTCCAAAATTCCACAAAACGGAA
CCAAGCTTAGGGGAGGTTTGGGGAAGTCCGGTCGTCTGCCACGTCAGGCTCCGGCACCAAAATA----------------
----AACCCCCCCCCCACCACCACCACCACACACACACACTCCGTACCTCTGCATGTACTCTGTATCTGCACCCATGGAG
ACCGTAGTCGCCGCTGAACCACCTTGGCCATCGTCTAGGCCTTGCCAGACCTCCGCCGCTCCAATCAAACGCTTGACCAC
CTTGGCATGCGCCACCGTTCCACCC-GGATCCCGCGGCGCCCAGGTACTATCTGCCCCTATCGCCGCTATCTACGGCAGG
CTTTGAAGGAAGCATGATGATTGCGTACTCGCCGAAGGAGGATGAATTGGTGTGTGATACATGGTTGGGCCAAAGTGTGC
AGTTTTAAGGCAGGAAGGATACACGTCACTCATCAAGCTCGTAAGTTT--------------------------------
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>SNPs
---------------S---------------------S----S-------------------------------------
-------------S---------S--------------S-----------------S------------S----------
---------S---------SSS------------------------------------------------------S---
-------S------S------------------------------S--------S-------------S-----------
-------SS--------S-------------------------------S---S----------------------S---
-----------S---------------------------------------S----------------------SS----
--------------------------S-----------------------------------------------------
-SSSSSSSS--------------------------------------------------------------------S--
----S---S-----------------------------------------------------------------------
---S---S------S--------------------------S-SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS------------------------------------------------------------
-----------------------------------------S---------------------------------SSSS-
-S------------------------------SS----------------------------------------------
-----------------------------------------------------S--------------------------
-----------------------------------------------S------------S-------S------S----
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----S---------------------------------------------------------------------------
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--------------------S---------------------------------------------------S-------
--------------S-------------------------------------------------------------S---
-----------------------------------------------S----S--------S-----------------S
-----------------------------------------------------S------------S------S------
S------S-----S------------------------------------------------------------------
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-------S----------------S------------------------------------------------SS-----
---------------SS-----------S----------SS-----S-------------------S--------S----
--S----------------------S------S----------S---------S----------S-----SS--------
-----------------------S------------S---------------------S--S------------------
--S---S---S-----------S--SS-SSS-S------------------------------------S----------
----S------S---S-------S-----------------------------------------S--------SS----
-------S-SS----S---S--S--S----------------------S---S-------S------SS--S-SS-S--S
-----------S--S----S----S--S---SS----------------S--------S-S-----S-S-S-------SS
-----S------S----S----SS-------S-S------S---S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_782
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------------------------------------------AACGTACTCCCTCTGTTGCA------------------
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>reverse_3296
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---------------ATCCACGCGCATTCATTTCG---------------------------------------------
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