Multiple sequence alignment - TraesCS7B01G304600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G304600 chr7B 100.000 2979 0 0 1 2979 545989647 545992625 0.000000e+00 5502.0
1 TraesCS7B01G304600 chr7B 83.459 266 31 7 2040 2305 620590180 620589928 4.960000e-58 235.0
2 TraesCS7B01G304600 chr7A 87.640 1610 84 24 287 1872 589115008 589116526 0.000000e+00 1764.0
3 TraesCS7B01G304600 chr7A 90.614 1108 75 14 1892 2979 589116581 589117679 0.000000e+00 1443.0
4 TraesCS7B01G304600 chr7A 92.453 106 6 2 101 205 589114663 589114767 1.850000e-32 150.0
5 TraesCS7B01G304600 chr7A 88.793 116 9 3 90 205 589114553 589114664 4.000000e-29 139.0
6 TraesCS7B01G304600 chr7A 83.333 84 14 0 236 319 610703107 610703024 8.850000e-11 78.7
7 TraesCS7B01G304600 chr7D 91.265 996 55 17 965 1944 515405753 515406732 0.000000e+00 1328.0
8 TraesCS7B01G304600 chr7D 83.274 281 35 9 2031 2310 40858250 40857981 6.380000e-62 248.0
9 TraesCS7B01G304600 chr7D 83.456 272 36 6 2036 2307 635668245 635667983 8.250000e-61 244.0
10 TraesCS7B01G304600 chr7D 80.797 276 22 13 549 824 515405359 515405603 1.410000e-43 187.0
11 TraesCS7B01G304600 chr7D 93.000 100 6 1 829 928 515405653 515405751 8.610000e-31 145.0
12 TraesCS7B01G304600 chr6D 84.783 276 34 4 2034 2309 25458474 25458741 1.360000e-68 270.0
13 TraesCS7B01G304600 chr1D 83.696 276 34 6 2034 2309 398570992 398571256 1.770000e-62 250.0
14 TraesCS7B01G304600 chr3B 80.586 273 40 10 2038 2309 10570103 10570363 6.510000e-47 198.0
15 TraesCS7B01G304600 chr5B 79.927 274 43 9 2036 2307 290035438 290035175 1.090000e-44 191.0
16 TraesCS7B01G304600 chr6B 80.800 250 35 8 2063 2310 690972541 690972303 1.820000e-42 183.0
17 TraesCS7B01G304600 chr2D 94.048 84 5 0 6 89 471070176 471070259 8.670000e-26 128.0
18 TraesCS7B01G304600 chr3A 92.683 82 6 0 8 89 14070797 14070878 5.220000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G304600 chr7B 545989647 545992625 2978 False 5502.000000 5502 100.000 1 2979 1 chr7B.!!$F1 2978
1 TraesCS7B01G304600 chr7A 589114553 589117679 3126 False 874.000000 1764 89.875 90 2979 4 chr7A.!!$F1 2889
2 TraesCS7B01G304600 chr7D 515405359 515406732 1373 False 553.333333 1328 88.354 549 1944 3 chr7D.!!$F1 1395

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 1031 0.179100 TATGCAGAGCTCCGCTTCAC 60.179 55.0 22.0 0.0 39.88 3.18 F
1509 1841 0.667792 GAAGTCGAAGCCAAGCTCGT 60.668 55.0 0.0 0.0 38.25 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1799 2149 0.729690 GCCTTCTCCTCACATTTCGC 59.270 55.0 0.00 0.00 0.0 4.70 R
2521 2908 0.933097 CTGCCCATTTCGATCGACTG 59.067 55.0 19.26 17.46 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.683768 GGACCAGATCCCTAGACATGT 58.316 52.381 0.00 0.00 42.46 3.21
34 35 3.845860 GGACCAGATCCCTAGACATGTA 58.154 50.000 0.00 0.00 42.46 2.29
35 36 4.421131 GGACCAGATCCCTAGACATGTAT 58.579 47.826 0.00 0.00 42.46 2.29
36 37 4.464597 GGACCAGATCCCTAGACATGTATC 59.535 50.000 0.00 0.00 42.46 2.24
37 38 5.329399 GACCAGATCCCTAGACATGTATCT 58.671 45.833 0.00 0.00 0.00 1.98
38 39 6.470456 ACCAGATCCCTAGACATGTATCTA 57.530 41.667 0.00 0.00 0.00 1.98
39 40 6.249951 ACCAGATCCCTAGACATGTATCTAC 58.750 44.000 0.00 0.00 0.00 2.59
40 41 5.355630 CCAGATCCCTAGACATGTATCTACG 59.644 48.000 0.00 0.00 0.00 3.51
41 42 6.174049 CAGATCCCTAGACATGTATCTACGA 58.826 44.000 0.00 0.00 0.00 3.43
42 43 6.092944 CAGATCCCTAGACATGTATCTACGAC 59.907 46.154 0.00 0.00 0.00 4.34
43 44 4.649692 TCCCTAGACATGTATCTACGACC 58.350 47.826 0.00 0.00 0.00 4.79
44 45 4.103627 TCCCTAGACATGTATCTACGACCA 59.896 45.833 0.00 0.00 0.00 4.02
45 46 4.456222 CCCTAGACATGTATCTACGACCAG 59.544 50.000 0.00 0.00 0.00 4.00
46 47 4.456222 CCTAGACATGTATCTACGACCAGG 59.544 50.000 0.00 0.00 0.00 4.45
47 48 4.166246 AGACATGTATCTACGACCAGGA 57.834 45.455 0.00 0.00 0.00 3.86
48 49 4.730966 AGACATGTATCTACGACCAGGAT 58.269 43.478 0.00 0.00 0.00 3.24
49 50 5.877491 AGACATGTATCTACGACCAGGATA 58.123 41.667 0.00 0.00 0.00 2.59
50 51 6.304624 AGACATGTATCTACGACCAGGATAA 58.695 40.000 0.00 0.00 0.00 1.75
51 52 6.207025 AGACATGTATCTACGACCAGGATAAC 59.793 42.308 0.00 0.00 0.00 1.89
52 53 5.831525 ACATGTATCTACGACCAGGATAACA 59.168 40.000 0.00 0.00 0.00 2.41
53 54 6.493802 ACATGTATCTACGACCAGGATAACAT 59.506 38.462 0.00 0.00 0.00 2.71
54 55 6.327279 TGTATCTACGACCAGGATAACATG 57.673 41.667 0.00 0.00 0.00 3.21
55 56 5.831525 TGTATCTACGACCAGGATAACATGT 59.168 40.000 0.00 0.00 0.00 3.21
56 57 5.871396 ATCTACGACCAGGATAACATGTT 57.129 39.130 16.68 16.68 0.00 2.71
57 58 5.258456 TCTACGACCAGGATAACATGTTC 57.742 43.478 15.85 0.98 0.00 3.18
58 59 3.973206 ACGACCAGGATAACATGTTCA 57.027 42.857 15.85 2.27 0.00 3.18
59 60 3.861840 ACGACCAGGATAACATGTTCAG 58.138 45.455 15.85 0.00 0.00 3.02
60 61 2.609459 CGACCAGGATAACATGTTCAGC 59.391 50.000 15.85 5.56 0.00 4.26
61 62 3.679917 CGACCAGGATAACATGTTCAGCT 60.680 47.826 15.85 0.00 0.00 4.24
62 63 3.614092 ACCAGGATAACATGTTCAGCTG 58.386 45.455 15.85 7.63 0.00 4.24
63 64 2.357009 CCAGGATAACATGTTCAGCTGC 59.643 50.000 15.85 4.22 0.00 5.25
64 65 2.357009 CAGGATAACATGTTCAGCTGCC 59.643 50.000 15.85 8.52 0.00 4.85
65 66 2.025981 AGGATAACATGTTCAGCTGCCA 60.026 45.455 15.85 8.68 0.00 4.92
66 67 2.098117 GGATAACATGTTCAGCTGCCAC 59.902 50.000 15.85 8.90 0.00 5.01
67 68 2.566833 TAACATGTTCAGCTGCCACT 57.433 45.000 15.85 0.00 0.00 4.00
68 69 0.956633 AACATGTTCAGCTGCCACTG 59.043 50.000 9.47 10.37 39.12 3.66
69 70 1.211969 CATGTTCAGCTGCCACTGC 59.788 57.895 9.47 0.00 37.59 4.40
70 71 1.074423 ATGTTCAGCTGCCACTGCT 59.926 52.632 9.47 0.00 39.15 4.24
71 72 0.959372 ATGTTCAGCTGCCACTGCTC 60.959 55.000 9.47 0.00 36.55 4.26
72 73 1.302351 GTTCAGCTGCCACTGCTCT 60.302 57.895 9.47 0.00 36.55 4.09
73 74 1.004080 TTCAGCTGCCACTGCTCTC 60.004 57.895 9.47 0.00 36.55 3.20
74 75 1.761500 TTCAGCTGCCACTGCTCTCA 61.761 55.000 9.47 0.00 36.55 3.27
75 76 1.742140 CAGCTGCCACTGCTCTCAG 60.742 63.158 0.00 0.00 45.71 3.35
83 84 4.079090 CTGCTCTCAGTAACGCCG 57.921 61.111 0.00 0.00 35.61 6.46
84 85 2.126071 TGCTCTCAGTAACGCCGC 60.126 61.111 0.00 0.00 0.00 6.53
85 86 2.182030 GCTCTCAGTAACGCCGCT 59.818 61.111 0.00 0.00 0.00 5.52
86 87 1.874466 GCTCTCAGTAACGCCGCTC 60.874 63.158 0.00 0.00 0.00 5.03
87 88 1.803943 CTCTCAGTAACGCCGCTCT 59.196 57.895 0.00 0.00 0.00 4.09
88 89 0.248296 CTCTCAGTAACGCCGCTCTC 60.248 60.000 0.00 0.00 0.00 3.20
99 100 0.669619 GCCGCTCTCCTTACCTAGTC 59.330 60.000 0.00 0.00 0.00 2.59
106 107 5.506649 CGCTCTCCTTACCTAGTCATTTCTC 60.507 48.000 0.00 0.00 0.00 2.87
144 243 6.238759 CCAATTAGCTTCTTAGGGGATTTTCG 60.239 42.308 0.00 0.00 0.00 3.46
157 256 4.331992 GGGGATTTTCGAACTAACTAGTGC 59.668 45.833 0.00 0.00 36.50 4.40
158 257 4.933400 GGGATTTTCGAACTAACTAGTGCA 59.067 41.667 0.00 0.00 36.50 4.57
227 347 3.007182 ACGGATGAAAGAAAGGTAACCGA 59.993 43.478 0.00 0.00 40.78 4.69
229 349 3.939592 GGATGAAAGAAAGGTAACCGAGG 59.060 47.826 0.00 0.00 37.17 4.63
230 350 4.565028 GGATGAAAGAAAGGTAACCGAGGT 60.565 45.833 0.00 0.00 37.17 3.85
231 351 5.337813 GGATGAAAGAAAGGTAACCGAGGTA 60.338 44.000 0.00 0.00 37.17 3.08
233 353 5.299949 TGAAAGAAAGGTAACCGAGGTAAC 58.700 41.667 0.00 0.00 37.17 2.50
234 354 4.961438 AAGAAAGGTAACCGAGGTAACA 57.039 40.909 0.00 0.00 36.13 2.41
235 355 5.494390 AAGAAAGGTAACCGAGGTAACAT 57.506 39.130 0.00 0.00 36.13 2.71
236 356 6.610075 AAGAAAGGTAACCGAGGTAACATA 57.390 37.500 0.00 0.00 36.13 2.29
237 357 6.610075 AGAAAGGTAACCGAGGTAACATAA 57.390 37.500 0.00 0.00 36.13 1.90
238 358 6.401394 AGAAAGGTAACCGAGGTAACATAAC 58.599 40.000 0.00 0.00 36.13 1.89
241 361 4.531732 AGGTAACCGAGGTAACATAACCAA 59.468 41.667 0.00 0.00 38.90 3.67
242 362 4.872124 GGTAACCGAGGTAACATAACCAAG 59.128 45.833 0.00 0.00 42.40 3.61
245 365 3.054655 ACCGAGGTAACATAACCAAGCAT 60.055 43.478 0.00 0.00 42.40 3.79
246 366 3.312421 CCGAGGTAACATAACCAAGCATG 59.688 47.826 0.00 0.00 42.40 4.06
248 368 3.023832 AGGTAACATAACCAAGCATGGC 58.976 45.455 8.15 0.00 46.56 4.40
249 369 4.489393 AGGTAACATAACCAAGCATGGCG 61.489 47.826 8.15 0.00 46.56 5.69
255 375 4.440127 CCAAGCATGGCGGCCAAC 62.440 66.667 27.70 20.73 40.58 3.77
257 377 3.683937 AAGCATGGCGGCCAACAC 61.684 61.111 27.70 17.72 36.95 3.32
261 381 1.677300 CATGGCGGCCAACACCTAA 60.677 57.895 27.70 0.00 36.95 2.69
262 382 1.075836 ATGGCGGCCAACACCTAAA 59.924 52.632 27.70 0.00 36.95 1.85
263 383 0.965363 ATGGCGGCCAACACCTAAAG 60.965 55.000 27.70 0.00 36.95 1.85
264 384 1.302993 GGCGGCCAACACCTAAAGA 60.303 57.895 15.62 0.00 0.00 2.52
265 385 0.679960 GGCGGCCAACACCTAAAGAT 60.680 55.000 15.62 0.00 0.00 2.40
267 387 2.361789 GCGGCCAACACCTAAAGATAA 58.638 47.619 2.24 0.00 0.00 1.75
268 388 2.750712 GCGGCCAACACCTAAAGATAAA 59.249 45.455 2.24 0.00 0.00 1.40
269 389 3.181500 GCGGCCAACACCTAAAGATAAAG 60.181 47.826 2.24 0.00 0.00 1.85
270 390 3.181500 CGGCCAACACCTAAAGATAAAGC 60.181 47.826 2.24 0.00 0.00 3.51
271 391 3.761752 GGCCAACACCTAAAGATAAAGCA 59.238 43.478 0.00 0.00 0.00 3.91
273 393 5.343249 GCCAACACCTAAAGATAAAGCATG 58.657 41.667 0.00 0.00 0.00 4.06
274 394 5.343249 CCAACACCTAAAGATAAAGCATGC 58.657 41.667 10.51 10.51 0.00 4.06
275 395 5.126061 CCAACACCTAAAGATAAAGCATGCT 59.874 40.000 16.30 16.30 0.00 3.79
276 396 6.350445 CCAACACCTAAAGATAAAGCATGCTT 60.350 38.462 27.21 27.21 37.98 3.91
278 398 6.624423 ACACCTAAAGATAAAGCATGCTTTG 58.376 36.000 42.11 29.19 44.84 2.77
291 550 2.512485 TGCTTTGCAAGATTGTGTGG 57.488 45.000 0.00 0.00 34.76 4.17
294 553 2.400399 CTTTGCAAGATTGTGTGGCTG 58.600 47.619 0.00 0.00 0.00 4.85
305 564 0.883833 GTGTGGCTGGACATTTGAGG 59.116 55.000 0.00 0.00 0.00 3.86
311 570 4.947388 GTGGCTGGACATTTGAGGTTATAA 59.053 41.667 0.00 0.00 0.00 0.98
313 572 6.096846 GTGGCTGGACATTTGAGGTTATAAAT 59.903 38.462 0.00 0.00 0.00 1.40
314 573 6.667414 TGGCTGGACATTTGAGGTTATAAATT 59.333 34.615 0.00 0.00 0.00 1.82
315 574 7.147915 TGGCTGGACATTTGAGGTTATAAATTC 60.148 37.037 0.00 0.00 0.00 2.17
352 611 2.154462 GAAGTAAAAGCAGCAGCCTGA 58.846 47.619 0.00 0.00 41.77 3.86
354 613 1.072965 AGTAAAAGCAGCAGCCTGAGT 59.927 47.619 0.00 0.00 41.77 3.41
355 614 1.882623 GTAAAAGCAGCAGCCTGAGTT 59.117 47.619 0.00 0.00 41.77 3.01
356 615 1.406903 AAAAGCAGCAGCCTGAGTTT 58.593 45.000 0.00 0.00 41.77 2.66
357 616 1.406903 AAAGCAGCAGCCTGAGTTTT 58.593 45.000 0.00 0.00 41.77 2.43
358 617 1.406903 AAGCAGCAGCCTGAGTTTTT 58.593 45.000 0.00 0.00 41.77 1.94
359 618 2.276732 AGCAGCAGCCTGAGTTTTTA 57.723 45.000 0.00 0.00 41.77 1.52
360 619 2.157738 AGCAGCAGCCTGAGTTTTTAG 58.842 47.619 0.00 0.00 41.77 1.85
361 620 1.200948 GCAGCAGCCTGAGTTTTTAGG 59.799 52.381 0.00 0.00 41.77 2.69
362 621 1.815003 CAGCAGCCTGAGTTTTTAGGG 59.185 52.381 0.00 0.00 41.77 3.53
363 622 1.177401 GCAGCCTGAGTTTTTAGGGG 58.823 55.000 0.00 0.00 34.58 4.79
364 623 1.177401 CAGCCTGAGTTTTTAGGGGC 58.823 55.000 0.00 0.00 39.82 5.80
365 624 0.777446 AGCCTGAGTTTTTAGGGGCA 59.223 50.000 0.00 0.00 41.71 5.36
427 686 6.468972 ACATATATTTTGATAGGGTGGCCT 57.531 37.500 3.32 0.00 0.00 5.19
428 687 6.485171 ACATATATTTTGATAGGGTGGCCTC 58.515 40.000 3.32 0.00 0.00 4.70
429 688 2.348411 ATTTTGATAGGGTGGCCTCG 57.652 50.000 3.32 0.00 0.00 4.63
430 689 0.393808 TTTTGATAGGGTGGCCTCGC 60.394 55.000 13.60 13.60 0.00 5.03
431 690 1.558167 TTTGATAGGGTGGCCTCGCA 61.558 55.000 22.12 9.88 0.00 5.10
432 691 2.109181 GATAGGGTGGCCTCGCAC 59.891 66.667 22.12 10.37 0.00 5.34
433 692 3.462199 GATAGGGTGGCCTCGCACC 62.462 68.421 22.12 12.68 40.60 5.01
576 835 1.852648 CCGTGTGTCGATGTGTGTG 59.147 57.895 0.00 0.00 42.86 3.82
578 837 1.600912 CCGTGTGTCGATGTGTGTGTA 60.601 52.381 0.00 0.00 42.86 2.90
650 913 4.814294 GTGGCGCCTGTCCCGTAG 62.814 72.222 29.70 0.00 0.00 3.51
698 961 2.125673 GGCGCGTACACATCCAGT 60.126 61.111 8.43 0.00 0.00 4.00
705 968 1.676529 CGTACACATCCAGTCCGATCT 59.323 52.381 0.00 0.00 0.00 2.75
706 969 2.876550 CGTACACATCCAGTCCGATCTA 59.123 50.000 0.00 0.00 0.00 1.98
707 970 3.502595 CGTACACATCCAGTCCGATCTAT 59.497 47.826 0.00 0.00 0.00 1.98
708 971 4.378563 CGTACACATCCAGTCCGATCTATC 60.379 50.000 0.00 0.00 0.00 2.08
709 972 3.838565 ACACATCCAGTCCGATCTATCT 58.161 45.455 0.00 0.00 0.00 1.98
710 973 3.823873 ACACATCCAGTCCGATCTATCTC 59.176 47.826 0.00 0.00 0.00 2.75
727 990 3.214696 TCTCATCTCATGTCGCCTCTA 57.785 47.619 0.00 0.00 0.00 2.43
749 1012 1.414158 CAGGACATCACCCCGTATCT 58.586 55.000 0.00 0.00 0.00 1.98
762 1025 1.135546 CCGTATCTATGCAGAGCTCCG 60.136 57.143 10.93 0.00 33.22 4.63
768 1031 0.179100 TATGCAGAGCTCCGCTTCAC 60.179 55.000 22.00 0.00 39.88 3.18
787 1050 2.353889 CACTGAGCTGCCATTGATACAC 59.646 50.000 0.00 0.00 0.00 2.90
826 1089 9.935241 CAGCTGGAGACACTGTATATATAAATT 57.065 33.333 5.57 0.00 35.84 1.82
885 1200 3.308595 TCGTGATTATTGGTTCATGCGTC 59.691 43.478 0.00 0.00 0.00 5.19
962 1277 2.521465 CAGTGCCCAAACTGCCCA 60.521 61.111 0.00 0.00 41.05 5.36
1012 1327 3.118445 TCACATACGAAATCCATCCAGCA 60.118 43.478 0.00 0.00 0.00 4.41
1025 1340 3.128242 CCATCCAGCAAAAGCTACTCTTG 59.872 47.826 0.00 0.00 34.67 3.02
1043 1374 7.423844 ACTCTTGTGAATCATATACCACTCA 57.576 36.000 0.00 0.00 0.00 3.41
1044 1375 7.495901 ACTCTTGTGAATCATATACCACTCAG 58.504 38.462 0.00 0.00 0.00 3.35
1174 1506 9.438291 GTTGCATATGTACTAATCAATGAACAC 57.562 33.333 4.29 0.00 0.00 3.32
1230 1562 6.600822 AGCTATTTGACTTAGTACGTGGTAGA 59.399 38.462 0.00 0.00 0.00 2.59
1231 1563 7.284944 AGCTATTTGACTTAGTACGTGGTAGAT 59.715 37.037 0.00 0.00 0.00 1.98
1232 1564 7.919621 GCTATTTGACTTAGTACGTGGTAGATT 59.080 37.037 0.00 0.00 0.00 2.40
1255 1587 3.133141 TGTTGGTTTGATGTCGGATGA 57.867 42.857 0.00 0.00 0.00 2.92
1356 1688 0.977395 AAGGAGGAGAAGAACCGTGG 59.023 55.000 0.00 0.00 0.00 4.94
1434 1766 1.593209 GTGACAACGGCGACTCCAA 60.593 57.895 16.62 0.00 34.01 3.53
1509 1841 0.667792 GAAGTCGAAGCCAAGCTCGT 60.668 55.000 0.00 0.00 38.25 4.18
1874 2224 6.258230 TGCTTTGTCAGATTCAATAAGGTG 57.742 37.500 0.00 0.00 0.00 4.00
1997 2382 6.021596 GTGTTTTCTTCTACAACACACACTG 58.978 40.000 9.06 0.00 46.37 3.66
2004 2389 8.365399 TCTTCTACAACACACACTGAAAATAG 57.635 34.615 0.00 0.00 0.00 1.73
2015 2400 3.436704 CACTGAAAATAGAGAGGCGCAAA 59.563 43.478 10.83 0.00 0.00 3.68
2022 2407 2.119801 AGAGAGGCGCAAATGATGTT 57.880 45.000 10.83 0.00 0.00 2.71
2025 2410 3.118629 AGAGAGGCGCAAATGATGTTCTA 60.119 43.478 10.83 0.00 0.00 2.10
2032 2417 4.864247 GCGCAAATGATGTTCTAAAACCAT 59.136 37.500 0.30 0.00 34.28 3.55
2050 2435 6.773976 AACCATTAAGGACATGTACAATGG 57.226 37.500 27.28 27.28 45.10 3.16
2056 2441 9.119418 CATTAAGGACATGTACAATGGTTGATA 57.881 33.333 11.55 0.00 0.00 2.15
2059 2444 8.415950 AAGGACATGTACAATGGTTGATAAAA 57.584 30.769 11.55 0.00 0.00 1.52
2135 2520 7.315247 TGTATGCAATGCGTTATCTTTTAGT 57.685 32.000 4.87 0.00 0.00 2.24
2258 2643 4.817318 ATTTCTCTCTCCTTCACCTCAC 57.183 45.455 0.00 0.00 0.00 3.51
2270 2655 5.130477 TCCTTCACCTCACCATTTATCCTAC 59.870 44.000 0.00 0.00 0.00 3.18
2274 2659 4.028131 ACCTCACCATTTATCCTACGTGA 58.972 43.478 0.00 0.00 0.00 4.35
2278 2663 4.464951 TCACCATTTATCCTACGTGACACT 59.535 41.667 0.00 0.00 0.00 3.55
2288 2673 5.366460 TCCTACGTGACACTCCTAAGATAG 58.634 45.833 0.00 0.00 0.00 2.08
2291 2676 3.128938 ACGTGACACTCCTAAGATAGCAC 59.871 47.826 3.68 0.00 0.00 4.40
2292 2677 3.128764 CGTGACACTCCTAAGATAGCACA 59.871 47.826 3.68 0.00 0.00 4.57
2300 2685 6.199154 CACTCCTAAGATAGCACAATTGTACG 59.801 42.308 11.53 0.70 0.00 3.67
2315 2700 3.255969 TGTACGTGCCCTAAGATTTCC 57.744 47.619 0.00 0.00 0.00 3.13
2317 2702 3.262405 TGTACGTGCCCTAAGATTTCCTT 59.738 43.478 0.00 0.00 38.87 3.36
2358 2743 4.721132 TCAAAATCCGAGTAAAAGGTGGT 58.279 39.130 0.00 0.00 0.00 4.16
2360 2745 6.297582 TCAAAATCCGAGTAAAAGGTGGTAA 58.702 36.000 0.00 0.00 0.00 2.85
2379 2764 8.198778 GGTGGTAACCTCAAACTTAAAAATTCA 58.801 33.333 0.00 0.00 43.84 2.57
2390 2775 8.850452 CAAACTTAAAAATTCAGGAGATTACGC 58.150 33.333 0.00 0.00 0.00 4.42
2391 2776 6.772078 ACTTAAAAATTCAGGAGATTACGCG 58.228 36.000 3.53 3.53 0.00 6.01
2486 2871 7.015098 TGGTTTTATGTGAAGTTGGATCAACAT 59.985 33.333 12.46 1.24 45.66 2.71
2510 2895 3.209410 GGCATGTCTAATGTCTTGGAGG 58.791 50.000 0.00 0.00 0.00 4.30
2513 2898 5.053145 GCATGTCTAATGTCTTGGAGGTAG 58.947 45.833 0.00 0.00 0.00 3.18
2521 2908 6.969993 AATGTCTTGGAGGTAGATAGAGAC 57.030 41.667 0.00 0.00 34.24 3.36
2525 2912 5.529800 GTCTTGGAGGTAGATAGAGACAGTC 59.470 48.000 0.00 0.00 33.92 3.51
2583 2970 2.880443 CCAATATTCCCCCATGACCAG 58.120 52.381 0.00 0.00 0.00 4.00
2626 3013 1.052694 ACTTACCGGATGGGGGCTAC 61.053 60.000 9.46 0.00 41.60 3.58
2635 3022 1.681264 GATGGGGGCTACGGAATTTTG 59.319 52.381 0.00 0.00 0.00 2.44
2638 3025 1.897133 GGGGGCTACGGAATTTTGTTT 59.103 47.619 0.00 0.00 0.00 2.83
2640 3027 2.094390 GGGGCTACGGAATTTTGTTTCC 60.094 50.000 0.00 0.00 41.54 3.13
2641 3028 2.559231 GGGCTACGGAATTTTGTTTCCA 59.441 45.455 4.29 0.00 44.58 3.53
2653 3040 3.517296 TTGTTTCCAGGCTAATGTGGA 57.483 42.857 0.00 0.00 41.29 4.02
2674 3061 4.099419 GGAAGAAAACAAGTGGATGGTTGT 59.901 41.667 0.00 0.00 38.56 3.32
2685 3072 3.316308 GTGGATGGTTGTAATCATGAGGC 59.684 47.826 0.09 0.00 0.00 4.70
2724 3112 3.427233 CGTAACCTCCTTCCGTAAGTCTG 60.427 52.174 0.00 0.00 0.00 3.51
2732 3136 3.506067 CCTTCCGTAAGTCTGGCATTTTT 59.494 43.478 0.00 0.00 0.00 1.94
2734 3138 2.227865 TCCGTAAGTCTGGCATTTTTGC 59.772 45.455 0.00 0.00 0.00 3.68
2754 3158 6.542574 TTGCATCCAAAAATTGTTGATGTC 57.457 33.333 10.09 8.33 0.00 3.06
2805 3209 4.916183 AGAAAAATGAAGGAGGGTGAGAG 58.084 43.478 0.00 0.00 0.00 3.20
2883 3287 9.772973 AGAATTATGTACCATAGATGCGTAAAA 57.227 29.630 0.00 0.00 0.00 1.52
2885 3289 9.772973 AATTATGTACCATAGATGCGTAAAAGA 57.227 29.630 0.00 0.00 0.00 2.52
2891 3295 7.308782 ACCATAGATGCGTAAAAGAAGAAAG 57.691 36.000 0.00 0.00 0.00 2.62
2963 3367 4.275936 GGGATTACATGGGAGACAAATTCG 59.724 45.833 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.480480 GGATCTGGTCCAGTGGGA 57.520 61.111 18.65 0.00 46.96 4.37
14 15 5.329399 AGATACATGTCTAGGGATCTGGTC 58.671 45.833 0.00 0.00 0.00 4.02
15 16 5.346782 AGATACATGTCTAGGGATCTGGT 57.653 43.478 0.00 0.00 0.00 4.00
16 17 5.355630 CGTAGATACATGTCTAGGGATCTGG 59.644 48.000 14.21 5.23 34.54 3.86
17 18 6.092944 GTCGTAGATACATGTCTAGGGATCTG 59.907 46.154 14.21 2.34 40.67 2.90
18 19 6.174760 GTCGTAGATACATGTCTAGGGATCT 58.825 44.000 0.00 6.71 40.67 2.75
19 20 5.354792 GGTCGTAGATACATGTCTAGGGATC 59.645 48.000 0.00 0.00 40.67 3.36
20 21 5.222068 TGGTCGTAGATACATGTCTAGGGAT 60.222 44.000 0.00 0.00 40.67 3.85
21 22 4.103627 TGGTCGTAGATACATGTCTAGGGA 59.896 45.833 0.00 0.00 40.67 4.20
22 23 4.395625 TGGTCGTAGATACATGTCTAGGG 58.604 47.826 0.00 0.00 40.67 3.53
23 24 4.456222 CCTGGTCGTAGATACATGTCTAGG 59.544 50.000 0.00 4.79 40.67 3.02
24 25 5.306394 TCCTGGTCGTAGATACATGTCTAG 58.694 45.833 0.00 0.00 40.67 2.43
25 26 5.300411 TCCTGGTCGTAGATACATGTCTA 57.700 43.478 0.00 0.00 40.67 2.59
26 27 4.166246 TCCTGGTCGTAGATACATGTCT 57.834 45.455 0.00 0.00 40.67 3.41
27 28 6.016527 TGTTATCCTGGTCGTAGATACATGTC 60.017 42.308 0.00 0.00 40.67 3.06
28 29 5.831525 TGTTATCCTGGTCGTAGATACATGT 59.168 40.000 2.69 2.69 40.67 3.21
29 30 6.327279 TGTTATCCTGGTCGTAGATACATG 57.673 41.667 0.00 0.00 40.67 3.21
30 31 6.493802 ACATGTTATCCTGGTCGTAGATACAT 59.506 38.462 0.00 0.00 40.67 2.29
31 32 5.831525 ACATGTTATCCTGGTCGTAGATACA 59.168 40.000 0.00 0.00 40.67 2.29
32 33 6.328641 ACATGTTATCCTGGTCGTAGATAC 57.671 41.667 0.00 0.00 40.67 2.24
33 34 6.548251 TGAACATGTTATCCTGGTCGTAGATA 59.452 38.462 11.95 0.00 40.67 1.98
34 35 5.362717 TGAACATGTTATCCTGGTCGTAGAT 59.637 40.000 11.95 0.00 40.67 1.98
35 36 4.707934 TGAACATGTTATCCTGGTCGTAGA 59.292 41.667 11.95 0.00 31.55 2.59
36 37 5.006153 TGAACATGTTATCCTGGTCGTAG 57.994 43.478 11.95 0.00 31.55 3.51
37 38 4.679639 GCTGAACATGTTATCCTGGTCGTA 60.680 45.833 11.95 0.00 31.55 3.43
38 39 3.861840 CTGAACATGTTATCCTGGTCGT 58.138 45.455 11.95 0.00 31.55 4.34
39 40 2.609459 GCTGAACATGTTATCCTGGTCG 59.391 50.000 11.95 0.00 31.55 4.79
40 41 3.624861 CAGCTGAACATGTTATCCTGGTC 59.375 47.826 11.95 0.00 0.00 4.02
41 42 3.614092 CAGCTGAACATGTTATCCTGGT 58.386 45.455 11.95 6.32 0.00 4.00
42 43 2.357009 GCAGCTGAACATGTTATCCTGG 59.643 50.000 20.43 10.68 0.00 4.45
43 44 2.357009 GGCAGCTGAACATGTTATCCTG 59.643 50.000 20.43 16.97 0.00 3.86
44 45 2.025981 TGGCAGCTGAACATGTTATCCT 60.026 45.455 20.43 4.86 0.00 3.24
45 46 2.098117 GTGGCAGCTGAACATGTTATCC 59.902 50.000 20.43 5.25 0.00 2.59
46 47 3.012518 AGTGGCAGCTGAACATGTTATC 58.987 45.455 20.43 0.09 0.00 1.75
47 48 2.751259 CAGTGGCAGCTGAACATGTTAT 59.249 45.455 20.43 0.00 38.70 1.89
48 49 2.153645 CAGTGGCAGCTGAACATGTTA 58.846 47.619 20.43 0.00 38.70 2.41
49 50 0.956633 CAGTGGCAGCTGAACATGTT 59.043 50.000 20.43 11.78 38.70 2.71
50 51 1.521450 GCAGTGGCAGCTGAACATGT 61.521 55.000 20.43 4.49 38.70 3.21
51 52 1.211969 GCAGTGGCAGCTGAACATG 59.788 57.895 20.43 14.99 38.70 3.21
52 53 0.959372 GAGCAGTGGCAGCTGAACAT 60.959 55.000 20.43 5.09 43.58 2.71
53 54 1.598962 GAGCAGTGGCAGCTGAACA 60.599 57.895 20.43 12.95 43.58 3.18
54 55 1.297456 GAGAGCAGTGGCAGCTGAAC 61.297 60.000 20.43 14.86 43.58 3.18
55 56 1.004080 GAGAGCAGTGGCAGCTGAA 60.004 57.895 20.43 0.69 43.58 3.02
56 57 2.168666 CTGAGAGCAGTGGCAGCTGA 62.169 60.000 20.43 0.00 43.58 4.26
57 58 1.742140 CTGAGAGCAGTGGCAGCTG 60.742 63.158 10.11 10.11 43.58 4.24
58 59 2.663796 CTGAGAGCAGTGGCAGCT 59.336 61.111 0.24 0.24 46.82 4.24
67 68 2.126071 GCGGCGTTACTGAGAGCA 60.126 61.111 9.37 0.00 0.00 4.26
68 69 1.874466 GAGCGGCGTTACTGAGAGC 60.874 63.158 9.37 0.00 0.00 4.09
69 70 0.248296 GAGAGCGGCGTTACTGAGAG 60.248 60.000 9.37 0.00 0.00 3.20
70 71 1.654954 GGAGAGCGGCGTTACTGAGA 61.655 60.000 9.37 0.00 0.00 3.27
71 72 1.226717 GGAGAGCGGCGTTACTGAG 60.227 63.158 9.37 0.00 0.00 3.35
72 73 1.248785 AAGGAGAGCGGCGTTACTGA 61.249 55.000 9.37 0.00 0.00 3.41
73 74 0.454600 TAAGGAGAGCGGCGTTACTG 59.545 55.000 9.37 0.00 0.00 2.74
74 75 0.455005 GTAAGGAGAGCGGCGTTACT 59.545 55.000 9.37 5.50 35.11 2.24
75 76 0.527169 GGTAAGGAGAGCGGCGTTAC 60.527 60.000 9.37 7.99 36.43 2.50
76 77 0.682209 AGGTAAGGAGAGCGGCGTTA 60.682 55.000 9.37 0.00 0.00 3.18
77 78 0.682209 TAGGTAAGGAGAGCGGCGTT 60.682 55.000 9.37 0.48 0.00 4.84
78 79 1.077212 TAGGTAAGGAGAGCGGCGT 60.077 57.895 9.37 0.00 0.00 5.68
79 80 1.102222 ACTAGGTAAGGAGAGCGGCG 61.102 60.000 0.51 0.51 0.00 6.46
80 81 0.669619 GACTAGGTAAGGAGAGCGGC 59.330 60.000 0.00 0.00 0.00 6.53
81 82 2.054232 TGACTAGGTAAGGAGAGCGG 57.946 55.000 0.00 0.00 0.00 5.52
82 83 4.339814 AGAAATGACTAGGTAAGGAGAGCG 59.660 45.833 0.00 0.00 0.00 5.03
83 84 5.596772 AGAGAAATGACTAGGTAAGGAGAGC 59.403 44.000 0.00 0.00 0.00 4.09
84 85 7.654022 AAGAGAAATGACTAGGTAAGGAGAG 57.346 40.000 0.00 0.00 0.00 3.20
85 86 8.437274 AAAAGAGAAATGACTAGGTAAGGAGA 57.563 34.615 0.00 0.00 0.00 3.71
189 289 4.941263 TCATCCGTATAAAGCTTTGCAAGT 59.059 37.500 22.02 5.23 0.00 3.16
210 330 5.163322 TGTTACCTCGGTTACCTTTCTTTCA 60.163 40.000 0.00 0.00 0.00 2.69
227 347 3.023832 GCCATGCTTGGTTATGTTACCT 58.976 45.455 19.05 0.00 45.57 3.08
229 349 2.223479 CCGCCATGCTTGGTTATGTTAC 60.223 50.000 19.05 0.21 45.57 2.50
230 350 2.020720 CCGCCATGCTTGGTTATGTTA 58.979 47.619 19.05 0.00 45.57 2.41
231 351 0.817013 CCGCCATGCTTGGTTATGTT 59.183 50.000 19.05 0.00 45.57 2.71
233 353 1.066257 GCCGCCATGCTTGGTTATG 59.934 57.895 19.05 7.67 45.57 1.90
234 354 2.127232 GGCCGCCATGCTTGGTTAT 61.127 57.895 19.05 0.00 45.57 1.89
235 355 2.753849 GGCCGCCATGCTTGGTTA 60.754 61.111 19.05 0.00 45.57 2.85
236 356 4.992740 TGGCCGCCATGCTTGGTT 62.993 61.111 19.05 0.00 45.57 3.67
237 357 4.992740 TTGGCCGCCATGCTTGGT 62.993 61.111 14.30 0.00 45.57 3.67
238 358 4.440127 GTTGGCCGCCATGCTTGG 62.440 66.667 14.30 14.22 46.66 3.61
245 365 1.602323 CTTTAGGTGTTGGCCGCCA 60.602 57.895 8.43 8.43 46.87 5.69
246 366 0.679960 ATCTTTAGGTGTTGGCCGCC 60.680 55.000 1.04 1.04 44.63 6.13
247 367 2.032680 TATCTTTAGGTGTTGGCCGC 57.967 50.000 0.00 0.00 0.00 6.53
248 368 3.181500 GCTTTATCTTTAGGTGTTGGCCG 60.181 47.826 0.00 0.00 0.00 6.13
249 369 3.761752 TGCTTTATCTTTAGGTGTTGGCC 59.238 43.478 0.00 0.00 0.00 5.36
250 370 5.343249 CATGCTTTATCTTTAGGTGTTGGC 58.657 41.667 0.00 0.00 0.00 4.52
252 372 6.199937 AGCATGCTTTATCTTTAGGTGTTG 57.800 37.500 16.30 0.00 0.00 3.33
253 373 6.840780 AAGCATGCTTTATCTTTAGGTGTT 57.159 33.333 27.21 0.00 31.29 3.32
270 390 2.734606 CCACACAATCTTGCAAAGCATG 59.265 45.455 0.00 0.10 45.70 4.06
271 391 2.868839 GCCACACAATCTTGCAAAGCAT 60.869 45.455 0.00 0.00 45.70 3.79
273 393 1.142474 GCCACACAATCTTGCAAAGC 58.858 50.000 0.00 0.00 45.70 3.51
275 395 1.068895 CCAGCCACACAATCTTGCAAA 59.931 47.619 0.00 0.00 0.00 3.68
276 396 0.675083 CCAGCCACACAATCTTGCAA 59.325 50.000 0.00 0.00 0.00 4.08
278 398 0.242017 GTCCAGCCACACAATCTTGC 59.758 55.000 0.00 0.00 0.00 4.01
279 399 1.608055 TGTCCAGCCACACAATCTTG 58.392 50.000 0.00 0.00 0.00 3.02
280 400 2.592102 ATGTCCAGCCACACAATCTT 57.408 45.000 0.00 0.00 0.00 2.40
281 401 2.559668 CAAATGTCCAGCCACACAATCT 59.440 45.455 0.00 0.00 0.00 2.40
284 404 1.955778 CTCAAATGTCCAGCCACACAA 59.044 47.619 0.00 0.00 0.00 3.33
285 405 1.608055 CTCAAATGTCCAGCCACACA 58.392 50.000 0.00 0.00 0.00 3.72
291 550 7.771183 TGAATTTATAACCTCAAATGTCCAGC 58.229 34.615 0.00 0.00 0.00 4.85
294 553 9.736023 GTCATGAATTTATAACCTCAAATGTCC 57.264 33.333 0.00 0.00 0.00 4.02
326 585 4.156739 GGCTGCTGCTTTTACTTCTTGTAT 59.843 41.667 15.64 0.00 39.59 2.29
327 586 3.502211 GGCTGCTGCTTTTACTTCTTGTA 59.498 43.478 15.64 0.00 39.59 2.41
352 611 4.929146 ATCACTAGTGCCCCTAAAAACT 57.071 40.909 18.45 0.00 0.00 2.66
354 613 4.698304 CGAAATCACTAGTGCCCCTAAAAA 59.302 41.667 18.45 0.00 0.00 1.94
355 614 4.258543 CGAAATCACTAGTGCCCCTAAAA 58.741 43.478 18.45 0.00 0.00 1.52
356 615 3.262405 ACGAAATCACTAGTGCCCCTAAA 59.738 43.478 18.45 0.00 0.00 1.85
357 616 2.835764 ACGAAATCACTAGTGCCCCTAA 59.164 45.455 18.45 0.00 0.00 2.69
358 617 2.167693 CACGAAATCACTAGTGCCCCTA 59.832 50.000 18.45 0.37 0.00 3.53
359 618 1.066143 CACGAAATCACTAGTGCCCCT 60.066 52.381 18.45 2.26 0.00 4.79
360 619 1.066430 TCACGAAATCACTAGTGCCCC 60.066 52.381 18.45 6.21 34.84 5.80
361 620 2.380084 TCACGAAATCACTAGTGCCC 57.620 50.000 18.45 5.88 34.84 5.36
362 621 9.239002 GATATATATCACGAAATCACTAGTGCC 57.761 37.037 18.45 6.22 34.84 5.01
363 622 9.239002 GGATATATATCACGAAATCACTAGTGC 57.761 37.037 21.50 3.08 34.40 4.40
564 823 2.666508 GACCACATACACACACATCGAC 59.333 50.000 0.00 0.00 0.00 4.20
650 913 4.129737 TGCGCGGTGTAGAGCCTC 62.130 66.667 8.83 0.00 36.07 4.70
695 958 5.415389 ACATGAGATGAGATAGATCGGACTG 59.585 44.000 0.00 0.00 0.00 3.51
698 961 4.633565 CGACATGAGATGAGATAGATCGGA 59.366 45.833 0.00 0.00 0.00 4.55
705 968 3.760738 AGAGGCGACATGAGATGAGATA 58.239 45.455 0.00 0.00 0.00 1.98
706 969 2.596346 AGAGGCGACATGAGATGAGAT 58.404 47.619 0.00 0.00 0.00 2.75
707 970 2.064434 AGAGGCGACATGAGATGAGA 57.936 50.000 0.00 0.00 0.00 3.27
708 971 3.835779 CATAGAGGCGACATGAGATGAG 58.164 50.000 0.00 0.00 0.00 2.90
709 972 2.029560 GCATAGAGGCGACATGAGATGA 60.030 50.000 0.00 0.00 0.00 2.92
710 973 2.288640 TGCATAGAGGCGACATGAGATG 60.289 50.000 0.00 0.00 36.28 2.90
727 990 0.980754 TACGGGGTGATGTCCTGCAT 60.981 55.000 0.00 0.00 41.24 3.96
762 1025 0.170561 CAATGGCAGCTCAGTGAAGC 59.829 55.000 5.66 0.23 42.82 3.86
768 1031 1.596260 CGTGTATCAATGGCAGCTCAG 59.404 52.381 0.00 0.00 0.00 3.35
800 1063 9.935241 AATTTATATATACAGTGTCTCCAGCTG 57.065 33.333 6.78 6.78 36.41 4.24
885 1200 0.523966 GGCAGTAGATCGATCTCCGG 59.476 60.000 30.49 20.94 38.32 5.14
944 1259 3.305516 GGGCAGTTTGGGCACTGG 61.306 66.667 5.71 0.00 43.94 4.00
962 1277 4.019860 CAGGGTGCTTATATAGAGGTGCAT 60.020 45.833 0.00 0.00 32.98 3.96
1012 1327 9.331282 GGTATATGATTCACAAGAGTAGCTTTT 57.669 33.333 0.00 0.00 33.60 2.27
1025 1340 5.687730 CGTGACTGAGTGGTATATGATTCAC 59.312 44.000 0.00 0.00 0.00 3.18
1043 1374 0.461339 ACTGCCAACGTTTCGTGACT 60.461 50.000 0.00 0.00 39.99 3.41
1044 1375 0.315869 CACTGCCAACGTTTCGTGAC 60.316 55.000 0.00 0.00 39.99 3.67
1174 1506 1.545136 TGCATGGCACCATTAGTTGTG 59.455 47.619 0.00 0.00 33.90 3.33
1230 1562 6.376864 TCATCCGACATCAAACCAACAATAAT 59.623 34.615 0.00 0.00 0.00 1.28
1231 1563 5.707764 TCATCCGACATCAAACCAACAATAA 59.292 36.000 0.00 0.00 0.00 1.40
1232 1564 5.249420 TCATCCGACATCAAACCAACAATA 58.751 37.500 0.00 0.00 0.00 1.90
1255 1587 7.254455 CGAAAAGTGAGACACAAAAGTGACTAT 60.254 37.037 2.22 0.00 36.74 2.12
1356 1688 1.669999 GGGCATGTCTTGGGTGATGC 61.670 60.000 0.00 0.00 40.44 3.91
1434 1766 0.748729 GATCGTGACCTCCTCGTCCT 60.749 60.000 0.00 0.00 33.85 3.85
1509 1841 2.568612 CTTCTGCAGGCTCGACGA 59.431 61.111 15.13 0.00 0.00 4.20
1562 1894 0.603569 TTCTCAGTCCTCTTCGCCAC 59.396 55.000 0.00 0.00 0.00 5.01
1563 1895 1.273606 CTTTCTCAGTCCTCTTCGCCA 59.726 52.381 0.00 0.00 0.00 5.69
1572 1904 2.815647 CGGCCGCTTTCTCAGTCC 60.816 66.667 14.67 0.00 0.00 3.85
1664 1999 4.107051 CTTGGCCGCCGCTTTCTG 62.107 66.667 4.58 0.00 34.44 3.02
1799 2149 0.729690 GCCTTCTCCTCACATTTCGC 59.270 55.000 0.00 0.00 0.00 4.70
1884 2234 5.919141 CCTGACCGAATTAACTACCTTATCG 59.081 44.000 0.00 0.00 0.00 2.92
1885 2235 6.700520 CACCTGACCGAATTAACTACCTTATC 59.299 42.308 0.00 0.00 0.00 1.75
1887 2237 5.481473 ACACCTGACCGAATTAACTACCTTA 59.519 40.000 0.00 0.00 0.00 2.69
1889 2239 3.836562 ACACCTGACCGAATTAACTACCT 59.163 43.478 0.00 0.00 0.00 3.08
1964 2349 5.120399 TGTAGAAGAAAACACCACACGATT 58.880 37.500 0.00 0.00 0.00 3.34
1967 2352 4.093703 TGTTGTAGAAGAAAACACCACACG 59.906 41.667 0.00 0.00 0.00 4.49
1997 2382 4.882671 TCATTTGCGCCTCTCTATTTTC 57.117 40.909 4.18 0.00 0.00 2.29
2004 2389 2.012673 AGAACATCATTTGCGCCTCTC 58.987 47.619 4.18 0.00 0.00 3.20
2015 2400 8.877864 TGTCCTTAATGGTTTTAGAACATCAT 57.122 30.769 0.00 0.00 37.51 2.45
2022 2407 9.747898 ATTGTACATGTCCTTAATGGTTTTAGA 57.252 29.630 0.00 0.00 37.07 2.10
2025 2410 7.610865 CCATTGTACATGTCCTTAATGGTTTT 58.389 34.615 22.47 0.00 39.59 2.43
2032 2417 9.521841 TTTATCAACCATTGTACATGTCCTTAA 57.478 29.630 0.00 0.00 0.00 1.85
2116 2501 8.552034 AGATAAGACTAAAAGATAACGCATTGC 58.448 33.333 0.00 0.00 0.00 3.56
2168 2553 9.034800 TCATAGCACAATATGTCTCACCATATA 57.965 33.333 0.00 0.00 37.10 0.86
2236 2621 4.019771 GGTGAGGTGAAGGAGAGAGAAATT 60.020 45.833 0.00 0.00 0.00 1.82
2253 2638 4.142026 TGTCACGTAGGATAAATGGTGAGG 60.142 45.833 0.00 0.00 35.34 3.86
2258 2643 4.099573 AGGAGTGTCACGTAGGATAAATGG 59.900 45.833 0.00 0.00 0.00 3.16
2270 2655 3.128764 TGTGCTATCTTAGGAGTGTCACG 59.871 47.826 0.00 0.00 0.00 4.35
2274 2659 6.054860 ACAATTGTGCTATCTTAGGAGTGT 57.945 37.500 11.07 0.00 0.00 3.55
2278 2663 6.040247 CACGTACAATTGTGCTATCTTAGGA 58.960 40.000 21.42 0.00 0.00 2.94
2291 2676 5.448632 GGAAATCTTAGGGCACGTACAATTG 60.449 44.000 3.24 3.24 0.00 2.32
2292 2677 4.638865 GGAAATCTTAGGGCACGTACAATT 59.361 41.667 0.00 0.00 0.00 2.32
2300 2685 3.697166 TCCAAAGGAAATCTTAGGGCAC 58.303 45.455 0.00 0.00 34.78 5.01
2358 2743 9.635404 TCTCCTGAATTTTTAAGTTTGAGGTTA 57.365 29.630 0.00 0.00 0.00 2.85
2360 2745 8.712228 ATCTCCTGAATTTTTAAGTTTGAGGT 57.288 30.769 0.00 0.00 0.00 3.85
2364 2749 8.850452 GCGTAATCTCCTGAATTTTTAAGTTTG 58.150 33.333 0.00 0.00 0.00 2.93
2370 2755 6.730960 AACGCGTAATCTCCTGAATTTTTA 57.269 33.333 14.46 0.00 0.00 1.52
2376 2761 8.428186 AAATTTATAACGCGTAATCTCCTGAA 57.572 30.769 14.46 0.00 0.00 3.02
2379 2764 7.924412 TCAGAAATTTATAACGCGTAATCTCCT 59.076 33.333 14.46 0.00 0.00 3.69
2444 2829 9.023962 ACATAAAACCATCATATGTTCAACAGT 57.976 29.630 1.90 0.00 37.03 3.55
2445 2830 9.292846 CACATAAAACCATCATATGTTCAACAG 57.707 33.333 1.90 0.00 37.99 3.16
2446 2831 9.018582 TCACATAAAACCATCATATGTTCAACA 57.981 29.630 1.90 0.00 37.99 3.33
2447 2832 9.853555 TTCACATAAAACCATCATATGTTCAAC 57.146 29.630 1.90 0.00 37.99 3.18
2449 2834 9.241919 ACTTCACATAAAACCATCATATGTTCA 57.758 29.630 1.90 0.00 37.99 3.18
2486 2871 3.010027 TCCAAGACATTAGACATGCCCAA 59.990 43.478 0.00 0.00 0.00 4.12
2510 2895 6.528014 TTTCGATCGACTGTCTCTATCTAC 57.472 41.667 19.26 0.00 0.00 2.59
2513 2898 5.150683 CCATTTCGATCGACTGTCTCTATC 58.849 45.833 19.26 5.60 0.00 2.08
2521 2908 0.933097 CTGCCCATTTCGATCGACTG 59.067 55.000 19.26 17.46 0.00 3.51
2525 2912 1.867233 CTAACCTGCCCATTTCGATCG 59.133 52.381 9.36 9.36 0.00 3.69
2583 2970 4.813296 AACATTGTTCTTTCGGACACTC 57.187 40.909 0.00 0.00 0.00 3.51
2635 3022 3.686016 TCTTCCACATTAGCCTGGAAAC 58.314 45.455 0.00 0.00 44.29 2.78
2638 3025 4.079253 GTTTTCTTCCACATTAGCCTGGA 58.921 43.478 0.00 0.00 34.58 3.86
2640 3027 5.010012 ACTTGTTTTCTTCCACATTAGCCTG 59.990 40.000 0.00 0.00 0.00 4.85
2641 3028 5.010012 CACTTGTTTTCTTCCACATTAGCCT 59.990 40.000 0.00 0.00 0.00 4.58
2653 3040 6.783708 TTACAACCATCCACTTGTTTTCTT 57.216 33.333 0.00 0.00 32.77 2.52
2674 3061 1.344438 CCTACTGCCGCCTCATGATTA 59.656 52.381 0.00 0.00 0.00 1.75
2685 3072 1.722011 ACGAAATCAACCTACTGCCG 58.278 50.000 0.00 0.00 0.00 5.69
2732 3136 5.856156 AGACATCAACAATTTTTGGATGCA 58.144 33.333 4.57 0.00 34.12 3.96
2734 3138 7.949903 TTGAGACATCAACAATTTTTGGATG 57.050 32.000 4.57 9.00 40.54 3.51
2779 3183 5.560724 TCACCCTCCTTCATTTTTCTACAG 58.439 41.667 0.00 0.00 0.00 2.74
2805 3209 7.789273 AAGTCTTGATCATGTTCTCATCATC 57.211 36.000 8.33 0.00 33.21 2.92
2871 3275 6.931838 TCTCCTTTCTTCTTTTACGCATCTA 58.068 36.000 0.00 0.00 0.00 1.98
2877 3281 8.812329 CATGAGTATCTCCTTTCTTCTTTTACG 58.188 37.037 0.00 0.00 34.92 3.18
2883 3287 4.718774 TGCCATGAGTATCTCCTTTCTTCT 59.281 41.667 0.00 0.00 34.92 2.85
2884 3288 5.028549 TGCCATGAGTATCTCCTTTCTTC 57.971 43.478 0.00 0.00 34.92 2.87
2885 3289 4.685575 GCTGCCATGAGTATCTCCTTTCTT 60.686 45.833 0.00 0.00 34.92 2.52
2891 3295 2.627515 TTGCTGCCATGAGTATCTCC 57.372 50.000 0.00 0.00 34.92 3.71
2933 3337 2.372172 CTCCCATGTAATCCCCTGGTAC 59.628 54.545 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.