>input_sequence_63946
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----------------------------------AATCCATCCAGCAAAAGCTACTCTTGTGAATCA-------------
---TATACCACTCAGTCACGAAACGTTGGCAGTGCCTTTCCTCCTGCTGTCCTGCACGATGGCGGCGGCTCAGGTTTTTA
-TAGCTACCTGCATCTTCTTGATCAGTCTCTGATATTGTGTTGCATATGTACTAATCAATGAACACACAACTAATGGTGC
CATGCATATATACATGAGCTATTTGACTTAGTACGTGGTAGATTATTGTTGGTTTGATGTCGGATGATAGTCACTTTTGT
GTCTCACTTTTCGATCGAATGTTCAGCAGGTCATGGCAGCACCCGTTCATGACAATAACAATTGCTCAAAGGAGGAGAAG
AACCGTGGCATCACCCAAGACATGCCCTTCACCGAGGCGGAGGAACAAGCTCCTGATGCAAAGGTGCGTGACAACGGCGA
CTCCAAGGACGAGGAGGTCACGATCGCGGTTGATACCGATGAGGGGCGAGGCTTAGCACAGGAAGTCGAAGCCAAGCTCG
TCGTCGAGCCTGCAGAAGGTGGAGCAAAGGAAACCAAGGAAGGAAGGCCCCGCGTGGCGAAGAGGACTGAGAAAGCGGCC
GCCAAGGGGGCGGTCGTCCCCGTCGACGACCACACTGATGA---TGAGGCTGCTGAGCCGAAAGGGGCAAAGAAGGCCCA
GAAAGCGGCGGCCAAGTGGGCGGTAGTCCCCATCGACGACGACACTGAAGATGAGGCCGCTGCGCCGG------------
---GGGCAGCGCATGTTGCTCCTGAGGAGGCGGCGGAGGCAGCTGGCGAGGAAGCGGGCGAAGGTGGCGCGAAATGTGAG
GAGAAGGCTCACGAGGAATAGGGGATGTGTTGTGGTGGTTTGCTTTGTCAGATTCAATAAGGTGGCGATAAGCCGATAAG
-----------------------------------GTAGTTAATTCGGTCAGGTGTAAGGTTGTAATCGAAGCAATCAGG
TGGAGTTGTAGTGTATTGCCTACAATAAAATCGTGTGGTGTTT-------------------------------------
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>chr7B_1_TraesCS7B01G304600
GAACAGTCCCACTGGACCAGATCCCTAGACATGTATCTACGACCAGGATAACATGTTCAGCTGCCACTGCTCTCAGTAAC
GCCGCTCTCCTTACCTAGTCATTTCTC-----------------------------------------------------
---------------------------------------------TTTTTTTCAGAACCAATTAGCTTCTTAGGGGATTT
TCGAACTAACTAGTGCATTTTTTAGGGGTGCTAGGG-TTTTTTAGCAAACTTGCAAAGCTTTAT----------------
----ACGGATGAAAGAAAGGTAACCGAGGTAACATAACCAAGCATGGCGGCCAACACCTAAAGATAAAGCATGCTTTGCA
AGATT---------------------------------------------------------------------------
----------------------------------------------------------------GTGTGGCTGGACATTT
GAGGTTATAAATTCATGACAAAAAATACAAGAAGTAAAAGCAGCAGCCTGAGTTTTTAGGGGCACTAGTGATTTCGTGAT
ATATATCCTTACTATGCGTGGAACATATATTTTGATAGGGTGGCCTCGCACCGTGGCAGCTGGCAAGGCCCCGGCCTCTC
GCTCGACGGATTCGCTCACGGCCCAAAGCGTGCGTCCCGGCCGAGGCGGCATCTCGCGCGGCCGTCGTGCTTCAAGGGGA
TGGCACGGCTGGGCAGCCGTGTGTCGATGTGTGTGTA----TGTGGTCGATCACATCACATGAGCGAGCGATCCGGGAGA
ACGGGCCGGGGACTGGTGGCGCCTGTCCCGTAGAGGCTCTACACCGCGCAGCACGAGGCCCCCGGCGCGTACACATCCAG
TCCGATCTATCTCATCTCATGTCGCCTCTATGCAGGACATCACCCCGTATCTATGCAGAGCTCCGCTTCACTGAGCTGCC
ATTGATACACGGCTCGGAGAGGCAGCTGGAGACACTGTATATATAAATTTATAATCCCAACTAAA---------------
-------------------------------------GTACTCGATCCAAGAAGATCTCGTGATTATTGGTTCATGCGTC
CGGAGATCGATCTACTGCCTGCTAGCTGCTTCTAGTTCGTCCTGGTAACATTCGCTGCCCAGTGCCCAAACTGCCCATGC
ACCTCTATATAAGCACCCTGACCCTCACATACGAAATCCATCCAGCAAAAGCTACTCTTGTGAATCA-------------
---TATACCACTCAGTCACGAAACGTTGGCAGTGCCTTTCCTCCTGCTGTCCTGCACGATGGCGGCGGCTCAGGTTTTTA
-TAGCTACCTGCATCTTCTTGATCAGTCTCTGATATTGTGTTGCATATGTACTAATCAATGAACACACAACTAATGGTGC
CATGCATATATACATGAGCTATTTGACTTAGTACGTGGTAGATTATTGTTGGTTTGATGTCGGATGATAGTCACTTTTGT
GTCTCACTTTTCGATCGAATGTTCAGCAGGTCATGGCAGCACCCGTTCATGACAATAACAATTGCTCAAAGGAGGAGAAG
AACCGTGGCATCACCCAAGACATGCCCTTCACCGAGGCGGAGGAACAAGCTCCTGATGCAAAGGTGCGTGACAACGGCGA
CTCCAAGGACGAGGAGGTCACGATCGCGGTTGATACCGATGAGGGGCGAGGCTTAGCACAGGAAGTCGAAGCCAAGCTCG
TCGTCGAGCCTGCAGAAGGTGGAGCAAAGGAAACCAAGGAAGGAAGGCCCCGCGTGGCGAAGAGGACTGAGAAAGCGGCC
GCCAAGGGGGCGGTCGTCCCCGTCGACGACCACACTGATGA---TGAGGCTGCTGAGCCGAAAGGGGCAAAGAAGGCCCA
GAAAGCGGCGGCCAAGTGGGCGGTAGTCCCCATCGACGACGACACTGAAGATGAGGCCGCTGCGCCGG------------
---GGGCAGCGCATGTTGCTCCTGAGGAGGCGGCGGAGGCAGCTGGCGAGGAAGCGGGCGAAGGTGGCGCGAAATGTGAG
GAGAAGGCTCACGAGGAATAGGGGATGTGTTGTGGTGGTTTGCTTTGTCAGATTCAATAAGGTGGCGATAAGCCGATAAG
-----------------------------------GTAGTTAATTCGGTCAGGTGTAAGGTTGTAATCGAAGCAATCAGG
TGGAGTTGTAGTGTATTGCCTACAATAAAATCGTGTGGTGTTTTCTTCTACAACACACACTGAAAATAGAGAGGCGCAAA
TGATGTTCTAAAACCATTAAGGACATGTACAATGGTTGATAAAAAAAGTCTTATTTTAAGTCTTGCATGTAATTTAGAGA
TTAACAAAAAAGGCATGTATGCAATGCGTTATCTTTTAGTCTTATCTTTAATAACTAATAGTTATTCCTAAATATATGGT
GAGACATATTGTGCTATGAGATCATCTCTTAAATAAGAAAAGACAAGCATTTTTTTTTATAATTTCTCTCTCCTTCACCT
CACCATTTATCCTACGTGACACTCCTAAGATAGCACAATTGTACGTGCCCTAAGATTTCCTTTGGAATTACATATTTTTC
TCAAAATCCGAGTAAAAGGTGGTAACCTCAAACTTAAAAATTCAGGAGATTACGCGTTATAAATTTCTGAGTATATATAT
GTACTAATTCAATCATCTATTTATAAAAACTGTTGAACATATGATGGTTTTATGTGAAGTTGGATCAACATTGGGCATGT
CTAATGTCTTGGAGGTAGATA--GAGACAGTCGATCGAAATGGGCAGGTTAGAAACAAAGTGGGTGTGGCCAATATTCCC
CCATGACCAGAGTGTCCGAAAGAACAATGTTATACTTACCGGATGGGGGCTACGGAATTTTGTTTCCAGGCTAATGTGGA
AGAAAACAAGTGGATGGTTGTAATCATGAGGC-GGCAGTAGGTTGATTTCGTAACCTCCTTCCGTAAGTCTGGCAT----
------------TTTTGCATCCAAAAATTGTTGATGTCTCAATATATACTTGAAGATAAAAGCTGTAGAAAAATGAAGGA
GGGTGAGAGATGATGAGAACATGATCAAGACTTTGATTATATTGAAGATGAACAATTTGAAGAATTATGTACCATAGATG
CGTAAAAGAAGAAAGGAGATACTCATGGCAGCAATAAGAATGTGGAGACAAATTCTGTACCAGGGGATTACATGGGAGAC
AAATTCGAGCTAGCACCAAGGC
>chr7A_90
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---------CTTACCTAGTTATTTCTTTTTTTCCAGAACCAATTAGCTTCTTAGGGGATTTTCTAACTAACTAGTGTGTT
TTAGGGGTACTAGTTTTTTTAGCAATATTGCACAGCTTTATTTCTTTTTTTTCAGAACCAATTAGCTTCTTAGGGGATTT
TCTAACTAACTAGTGTGTTTTTTAGGGGTACTAGGTTTTTTTTAGCAATCTTGCAAAGCTTTATTAGATCGTCGCAATGT
TTACACGGACGAAAGAAAGGTAACCGGGCACATCAGTACAGACACAAGCACTTATATACACGCGCATGCACTCTCGTCAT
CGAGAAGACCGTCTCCTCCCACTGAATGCGCATCGTCGGAAACTCTGAAATAAATCCAGAAATAAATGTGAATACCAGGA
TTTGAACCCTGATGGGCTGGTGATACCACAGTGCTTCTAACCATACAACCACAGGTTGGTTCACGTGTGCCTCGACATTT
GAGATTATATAAATATGACAAAAAC-ACAAGAAGTAAAAGCAGCAGCCTGCG------------CTAGTGATTTCGTGAT
ATATATCCTTACTATGCGTGGAACATATATTTTGATAGGGTGGCC-------------------------CCGGCCTCTC
GCTCGACGGATTCGCTCACGGCCCAAAGCGTGCGTCCCGGCCGAGGCGGCATCTCGTGCGGCCGTCGTGCTTCAAGGGGA
TGGCACGGCTGGGTAGCCGTGTATCGATGTGTGTACGTGTGTGTGGTCGATCACATCACATGAGCGAGCGATCCGGGAGA
ACG----GGGGACTGGTGGCGCCTGTCCCGTACAGGCTCTACACCGCGCGGCACGAGGCCCCCGGCGCGTACACA--GAG
CCCGATCG-----GTCTCATGTCGCCTCTCTGCAGGACATCACCCCGCAT---------------CTTCAGTGAGCTGCC
ATTGATACAAA-----------------GGGACACTGTATGTGTAAATATATAATCCCAACTAAA---------------
-------------------------------------GTACTCGATCCAAGGGGATCTCGTGATTATTGGTTCAAGCGTG
CGGAGATCGATCTACTGCCTGCTAGCTGCTTCTAGTTCGTCCTGGTAACATGCGCTGCTCAGTGCCCAAACTGCCCGTGC
ACCTCTATATAAGCACCCGGACCCTCACATACGAAATCCATCCAGCTAAAGCTACTCTTCTGAATCAGGCCTTTGCGATC
ATATATACCACTCGCTCACGAAACGGTGGCAGTGCCTTTCCTCCTGCTGCCCTGCACGATGGCGGCGGCTCAGGTTTTTA
-TAGCTACCTGCATCTTCTTGATCAGCCTCTGATATTGTGTTGCATATGTACTAATCAATGAACATACAACTAATGGTGC
CATGCATATATACATGACCTATTTGACTTACTTTGTGGTCG---ATTGTTGGTTTGATGCCGGATGTTAGTCACTTTTGT
GTCTCACTTTTCGATCGAATGTTCAGCAGGTCATGGCAGCACCTGTTCATGACAATGACAATCGCTCAAAGGAGGAGAAG
AACCGTGAGATCATCCAAGACACGCCCTGCACAGAGGCGGAAGAACAAGCTCCTTATGCAAAGGTGCGTGACAACGGCGA
CTCCATGGACGAGGAGGTCACGATCGCTGCTGATACCGATGAGGGGCGGGGCTTAGCACGGGAAGTCGAAGCCAAGCTCG
CTGTCGAGCCTGCAGAAGATAGAGCAAAGGAAACCAAGGAAGGAAGGCCCCGCCCGGCGAAGAAGACTGAGAAAGCGGCC
GCCAAGGGGGCTGTCGTCCCTGTCGACGACGACACTGATGATGGTGAGGCTGCTGAGCCGAAAGGGGCAAAGAAGACCGA
GAAAGCGGCGGCCAAGTGGGCGGTAGTCCCCGTCGACGATGACACTGGAGATGAGGCCGCTGCG---G------------
---GGGCAGCGCCTATTGCTCTTGAGGAGGCA---GAGTCAGCTAGCGAGGAAGCGGGCGAAGGTGGCACGAAGTGTGAG
GAGAAGGCTCACGAGGAATAGGGGATGTATTGTGGTGGTTTGCTTTGTCAGATTCAATAAGCGTCTCATAATGTAAAACG
TTTTTAGACACTAGTGTAGTGTCAAAAAACATGGAGTAGTTAATTCGGTCAGGTGTAAGGTTGTAAGTGAAGCAATCAGG
TGGAGTTGTAGTGTATTGCCTACAATAACATTGTGTGGTGTTTTCTTCTACAACACACACTAAAAATACAGAGGCGCAAG
TGATGTCCTGAAACCACTAAGGACATGTACAATGTTTGAT-AAGAGAGTCTTATCTCAAGTCTTGCATGTAATTTACAAA
TG-ACAAAAAAGACATGTATACAATGGGTTATCTTTTAGCCTTATCTTTAATAACTAGTAGCTATTTCTAAAAATATGGT
GAGACATATTGTGCTATGAGATCATCTCTTAAATAAGAGAAGACAAG---TTTTTTTTATGATTTCTCTCTCCTTCATCT
CAGCATTTATCCTATGTGGCACCCCTAAGATATCATCATTGTACATGCCCTAAGATTTCTTGTGGAATTACATATTTTTC
TCAAAATTCGAGTAAAAGGTGGAAGCTG-AAACTCAAAAAATCCGGAGATTACGAATTATAAATTTCTGAGTATATATAT
GTACTAATTCAGTCACCTATTTATAAAACTGCTA-AACATATGATGGTTTTATGTGAAGTTGGATCAACACTGGGCATGT
CTAATGTCTTGGAGATAAATATGGAGATAGTGGATCGAAATGGGCAGGTTAGAAACAAAGTGGGTGTGGCCAATATTCCC
CCATGACCAAAGTGTCCGAAAGAACAATGTTATACTTACCGGATGGGGGCTATGGAATTTTATTACG-GGCTAATGTGGC
AGAAAACAAGTGGATGGTTGAAATCATGAGGGGGGCAGTAGGTTGATTTCGTAACCTCCTTCCGTAAGTCTAGCATTTCC
GTAAGTCTAGCATTTCGTATCCAAAAAATGTTGATGTGTCAATATATACTTCAAGATAAAAGTTGTAGAAAAATGAAGGA
GGGTGAGAAATGATGAGAACATGATCAAGACTTTGATTATATTGAAGATGAACAATTTGAAGAATTATGTACCAGAGATG
TGTAAAGACAGAAAAGAGATACTCATGGCAGCAATAAGAATGTGGAGACAAATTCTATACCAGGGGATTACATGGGAGAC
AAATTCAAGCTAGCACCAAGGC
>chr7D_549
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------GGCTCGGCAGCTGGGTAGCCGTGTGTGTATT------TGGTCGATCACATCACATGAGCGAGCGATCTGGGAGA
ACGGGGA----ACTGGTGGCGCCTGTCCCGTACAGGCTCTACACCGCGCAG--------------------CACATCGAG
CCCGATCG-----ATCTCATGTCGCCTCTCCGCAGGACATCACCCCGTATCCATGCAGAGCTCCACTTCAGTGAGCTGTC
ATTGATCCAAGGCTCGGAGAGGTAGCTGGAGACACCGTATATATAA--------TCCCAACTAAAGTTCTCTTCTTCTTC
TTTTTTTTCTTCTTTTTTGGAGGATAACCCAACTAAAGTACTCGATCCAAGAAGATCTCGTGATTATTGGTTCATGCATG
TAGAGATCGACCTACTGCCTGCTAGCTGCTTCTAGTTCATCCG-----------------------------------GC
ACCTCTATATAACCACCCTGAACCTCACATACGAATGCCATCCAATTGAAGCTACTCTTCTGAAT---------------
---TATACCACTCGCTCACAGAACGTTGGCACTGTCTTTCCTCCTGCTGTCCTGCACGATGGCGGCGGCTCAGGTTTTTA
GTAGCTACCTGCATCTTCTTGATCAGTCTCTGATATTGTGTTGCATATGTACTAATCAATGAACATACAACTAATGGTGC
CATGCATATATACATGAGCTGTTGGACTTAGTACGTGGTAG---ATTGTTGGTTTGATGTCGGATGTTAGTCACTTTGAT
GTCTCACTTTTCGATCGAATGTTCAGCAGGTCATGGCAGCACCCGTTCATGACAATAACAATTGCTCAAAGGAGGAGAAG
AACCGTGACATCACCCAAGACATGCCCTTCACCGAGGCGGAGGAACAAGCACCTGATGCAAAGGTGCGTGACAACGGCGA
CTCCATGGACGAGGAGGTCACGATCGCGGTTGATACGGATGAGGGGCGAGGCTTAGCACAGGAAGTCGAAGCCAAGCTCG
CCGTCGAGCCTGCAGAAGGTGGATTAAAGGAAACCAAGGAAGGAAGACCCCGCCCGGCAAAGAAGACTGAGAAGGCGGCC
GCCAAGGGGGCGGTCGTCCCCGTCGACGACCACACTGCTGA---TGAGGCTGCTGAGCCGAAAGGGGCAAAGAAGGCCGA
GAAAGCGGCGGCCAAGTGGGCTGTAGTCCCCGTCGACGACGACACTGAAGATGAGGCCGCTGCGCCGGCGGATCAGGCAC
CGGGGCCAGCGCCTATTGCTCATGAGGAGGCGGCGGAGGCGGCCTGCGAGGAAGCGATCAAAGGTGGCACGAAATGTGAG
AAA---GCTCACGAGGAATAGGGGATGTGTTGTGGTGGTTTGCTTTGCCGGATTCAATAACGTAGCGATAAG--------
-----------------------------------GTAGTGAATTCGGTCGGGTTTAAGGTTGTAATCGAAGCAGTCAGG
TGGCGTTG------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS----------S------S-----------------------------------------------------
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--S------------SS------------S-----S------------S-------------------------------
---------S----------------S-SSS-SSSSSS--SS--SSSSSS-SS-S-SSS-SSSSS-SSSSS-SSSS-SSS
S--SS---------------------------------------------------------------------------
---------------------------------------------------------------------S--S-------
---S-----S-SSS----------SS------------------------S-SSSSSSSSSSSS----------------
---------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS----------
--------------------------------------------------------S-----------------------
----------------------S-----------S-S-------------------------------------------
-----SS-------------------------S--------------------------------------------S--
S------SSSSSS----------------S---------------------S------------S-----S---------
---------S------------S-------------------------S-------------------------------
-------------------------------------------------------------------------------S
---------------------------------------------------S------S-----------------S---
----------------------------------------------S------------S--------------------
-------------SS-----------------------------------------------------------------
-----------------------------------------------------------------S--------------
-----------------------------------------SSS----------------------S-------------
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-------S------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
S----------------------------------------------------SS--------S----------------
------------------------------------------------------------------------------S-
-------------------------------S------------------------------------------------
------------S-S------S----------------------S-----------------------S-----------
---------------------------------------------------------------S--------SSS-S-S-
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----------------------------S--S-----------------------------S------S----------S
------S--S------S-----------------S-----S--S-S--------S-S-------------------S-S-
-SS---------S-------S-----S------------S-----------------S---S----S-----S-------
--------------------------------------S--------SSS----------S----------------S--
--S-----------S---S---S---------S--SS-------S--------------S-S------------------
-------S--------------S-S-SSS-----S-----S--S----------SS------------------------
-----------S---S------------SSSS-SS-----------------------------------S---------
--------------S--S---------S---S------------------------------------------------
---------S------------------------------------------S--------S--S-SS-----------S
--------------------S----------S---------------------------------------S--------
---------------S-S---------S---------S-------------S----------S-----------------
--------S-----------------------------------------------------------------S-----
S-----SSS-----S-----------------------------------------S-----------------------
------S---------------
>forward_1031
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---------------------------------------------------TATGCAGAGCTCCGCTTCAC---------
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>reverse_2149
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--------------------------------------------------------------------GCGAAATGTGAG
GAGAAGGC------------------------------------------------------------------------
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>forward_1841
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-------------------------------------------------------------GAAGTCGAAGCCAAGCTCG
T-------------------------------------------------------------------------------
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>reverse_2908
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---------------------------CAGTCGATCGAAATGGGCAG---------------------------------
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