Multiple sequence alignment - TraesCS7B01G297500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G297500 chr7B 100.000 2348 0 0 1 2348 534822983 534825330 0.000000e+00 4337
1 TraesCS7B01G297500 chr7B 88.304 171 17 3 391 560 433905152 433904984 3.960000e-48 202
2 TraesCS7B01G297500 chr7A 89.436 1524 125 23 5 1506 574089656 574091165 0.000000e+00 1890
3 TraesCS7B01G297500 chr7A 83.942 411 38 8 1492 1885 574091238 574091637 3.690000e-98 368
4 TraesCS7B01G297500 chr7D 89.456 1214 88 17 687 1885 506658856 506660044 0.000000e+00 1496
5 TraesCS7B01G297500 chr7D 87.053 950 97 13 5 943 506664991 506665925 0.000000e+00 1050
6 TraesCS7B01G297500 chr7D 86.591 701 76 10 5 690 506651543 506652240 0.000000e+00 758
7 TraesCS7B01G297500 chr7D 89.070 613 42 6 1288 1885 506667706 506668308 0.000000e+00 737
8 TraesCS7B01G297500 chr7D 91.197 284 22 1 939 1222 506667424 506667704 1.320000e-102 383
9 TraesCS7B01G297500 chr4D 82.511 669 90 14 566 1229 421067864 421068510 1.580000e-156 562
10 TraesCS7B01G297500 chr4D 83.810 315 46 4 1223 1534 421084755 421085067 6.350000e-76 294
11 TraesCS7B01G297500 chr3D 79.073 712 133 14 769 1472 495166021 495166724 2.110000e-130 475
12 TraesCS7B01G297500 chr3A 78.059 711 141 13 769 1472 634573941 634574643 3.580000e-118 435
13 TraesCS7B01G297500 chr6D 89.474 171 14 4 391 559 354212084 354211916 1.830000e-51 213
14 TraesCS7B01G297500 chr2D 89.349 169 16 2 391 559 466815981 466816147 6.570000e-51 211
15 TraesCS7B01G297500 chr1D 88.889 171 14 5 391 559 355158765 355158598 3.060000e-49 206
16 TraesCS7B01G297500 chr5B 88.304 171 18 2 391 561 459048700 459048532 1.100000e-48 204
17 TraesCS7B01G297500 chr2B 88.372 172 16 4 391 560 771955051 771955220 1.100000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G297500 chr7B 534822983 534825330 2347 False 4337.000000 4337 100.000000 1 2348 1 chr7B.!!$F1 2347
1 TraesCS7B01G297500 chr7A 574089656 574091637 1981 False 1129.000000 1890 86.689000 5 1885 2 chr7A.!!$F1 1880
2 TraesCS7B01G297500 chr7D 506658856 506660044 1188 False 1496.000000 1496 89.456000 687 1885 1 chr7D.!!$F2 1198
3 TraesCS7B01G297500 chr7D 506651543 506652240 697 False 758.000000 758 86.591000 5 690 1 chr7D.!!$F1 685
4 TraesCS7B01G297500 chr7D 506664991 506668308 3317 False 723.333333 1050 89.106667 5 1885 3 chr7D.!!$F3 1880
5 TraesCS7B01G297500 chr4D 421067864 421068510 646 False 562.000000 562 82.511000 566 1229 1 chr4D.!!$F1 663
6 TraesCS7B01G297500 chr3D 495166021 495166724 703 False 475.000000 475 79.073000 769 1472 1 chr3D.!!$F1 703
7 TraesCS7B01G297500 chr3A 634573941 634574643 702 False 435.000000 435 78.059000 769 1472 1 chr3A.!!$F1 703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 128 0.10576 AGATGACATCCGAGGAGCCT 60.106 55.0 11.92 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 3584 0.03918 TGAGCTCGGGGTCAGACTTA 59.961 55.0 14.37 0.0 43.82 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 93 2.803030 AGGACTCTTCTAGGTGCGTA 57.197 50.000 0.00 0.00 0.00 4.42
103 112 5.238432 TGCGTACAAATTTTCACACTGAGAT 59.762 36.000 0.00 0.00 0.00 2.75
105 114 6.565811 GCGTACAAATTTTCACACTGAGATGA 60.566 38.462 0.00 0.00 0.00 2.92
118 127 0.316841 GAGATGACATCCGAGGAGCC 59.683 60.000 11.92 0.00 0.00 4.70
119 128 0.105760 AGATGACATCCGAGGAGCCT 60.106 55.000 11.92 0.00 0.00 4.58
130 140 1.804748 CGAGGAGCCTGGTACAAAAAC 59.195 52.381 0.00 0.00 38.70 2.43
134 144 2.293399 GGAGCCTGGTACAAAAACACAG 59.707 50.000 0.00 0.00 38.70 3.66
139 149 4.783242 CCTGGTACAAAAACACAGAATCG 58.217 43.478 0.00 0.00 38.70 3.34
140 150 4.513692 CCTGGTACAAAAACACAGAATCGA 59.486 41.667 0.00 0.00 38.70 3.59
143 153 4.909880 GGTACAAAAACACAGAATCGAAGC 59.090 41.667 0.00 0.00 0.00 3.86
146 156 3.795561 AAAACACAGAATCGAAGCTCG 57.204 42.857 0.00 0.00 42.10 5.03
174 188 7.846644 TTTTTGTGCAACTTCATCTTTTGAT 57.153 28.000 0.00 0.00 37.42 2.57
179 193 6.919662 TGTGCAACTTCATCTTTTGATCTTTC 59.080 34.615 0.00 0.00 35.48 2.62
182 196 8.145767 TGCAACTTCATCTTTTGATCTTTCATT 58.854 29.630 0.00 0.00 36.97 2.57
199 213 8.401046 TCTTTCATTTTGTTTTCTTTGTACCG 57.599 30.769 0.00 0.00 0.00 4.02
201 215 8.758633 TTTCATTTTGTTTTCTTTGTACCGAA 57.241 26.923 0.00 0.00 0.00 4.30
212 226 5.258841 TCTTTGTACCGAACTCCTCAGATA 58.741 41.667 0.00 0.00 0.00 1.98
213 227 5.357314 TCTTTGTACCGAACTCCTCAGATAG 59.643 44.000 0.00 0.00 0.00 2.08
219 233 3.551863 CCGAACTCCTCAGATAGCATGTC 60.552 52.174 0.00 0.00 0.00 3.06
226 240 1.202452 TCAGATAGCATGTCAGCGTGG 60.202 52.381 0.00 0.00 40.15 4.94
232 246 0.166814 GCATGTCAGCGTGGAACTTC 59.833 55.000 0.00 0.00 32.43 3.01
258 272 6.648192 CAACCACCTAGAAGAATCTCTCATT 58.352 40.000 0.00 0.00 37.10 2.57
304 319 9.476202 AGCTTGTTTTAAACAGGTTATCATTTC 57.524 29.630 18.59 2.19 43.27 2.17
318 333 9.099454 AGGTTATCATTTCGAATTACTTCACTC 57.901 33.333 0.00 0.00 0.00 3.51
332 347 1.545841 TCACTCGGTGCAGATGTACT 58.454 50.000 1.11 0.00 32.98 2.73
333 348 1.893137 TCACTCGGTGCAGATGTACTT 59.107 47.619 1.11 0.00 32.98 2.24
345 360 4.355437 CAGATGTACTTGAGCTCCTAACG 58.645 47.826 12.15 0.00 0.00 3.18
346 361 2.649331 TGTACTTGAGCTCCTAACGC 57.351 50.000 12.15 0.00 0.00 4.84
351 366 2.424246 ACTTGAGCTCCTAACGCTACTC 59.576 50.000 12.15 0.00 37.96 2.59
478 500 8.839310 ACATTCCAAGATCATAGCAGTTATAC 57.161 34.615 0.00 0.00 0.00 1.47
560 582 4.580580 CCTCTAGGGCATATTTCCAACAAC 59.419 45.833 0.00 0.00 0.00 3.32
579 601 0.457166 CCGCGTTGTCCTAATCGACA 60.457 55.000 4.92 0.00 40.98 4.35
620 642 2.985282 CGGTGCACAGTTGGCCAT 60.985 61.111 20.43 0.00 0.00 4.40
702 725 8.035394 TGAATATACCGATAGAATTCAAGCCTC 58.965 37.037 8.44 0.00 34.53 4.70
703 726 7.726033 ATATACCGATAGAATTCAAGCCTCT 57.274 36.000 8.44 0.00 39.76 3.69
704 727 4.762289 ACCGATAGAATTCAAGCCTCTT 57.238 40.909 8.44 0.00 39.76 2.85
706 729 5.602628 ACCGATAGAATTCAAGCCTCTTAC 58.397 41.667 8.44 0.00 39.76 2.34
707 730 5.128827 ACCGATAGAATTCAAGCCTCTTACA 59.871 40.000 8.44 0.00 39.76 2.41
709 732 6.018669 CCGATAGAATTCAAGCCTCTTACAAC 60.019 42.308 8.44 0.00 39.76 3.32
710 733 6.535150 CGATAGAATTCAAGCCTCTTACAACA 59.465 38.462 8.44 0.00 39.76 3.33
711 734 7.254252 CGATAGAATTCAAGCCTCTTACAACAG 60.254 40.741 8.44 0.00 39.76 3.16
712 735 4.457257 AGAATTCAAGCCTCTTACAACAGC 59.543 41.667 8.44 0.00 0.00 4.40
713 736 3.492102 TTCAAGCCTCTTACAACAGCT 57.508 42.857 0.00 0.00 34.64 4.24
714 737 2.771089 TCAAGCCTCTTACAACAGCTG 58.229 47.619 13.48 13.48 33.18 4.24
715 738 1.808945 CAAGCCTCTTACAACAGCTGG 59.191 52.381 19.93 3.21 33.18 4.85
716 739 1.352083 AGCCTCTTACAACAGCTGGA 58.648 50.000 19.93 3.15 31.23 3.86
899 922 9.112725 GCCATATATATTTAGATGTCATGCACA 57.887 33.333 0.00 0.00 40.18 4.57
912 937 5.195185 TGTCATGCACATCATTCACCTAAT 58.805 37.500 0.00 0.00 31.79 1.73
915 940 6.016527 GTCATGCACATCATTCACCTAATCAT 60.017 38.462 0.00 0.00 31.79 2.45
1020 2550 0.902048 TGAGGACCTGCAGTCTCCTG 60.902 60.000 27.22 9.04 45.54 3.86
1043 2573 3.526534 TCATCATTATCGCCGTTGTTGA 58.473 40.909 0.00 0.00 0.00 3.18
1044 2574 4.126437 TCATCATTATCGCCGTTGTTGAT 58.874 39.130 0.00 0.00 0.00 2.57
1080 2610 3.307906 ACGTCCGCCCAAGTAGCA 61.308 61.111 0.00 0.00 0.00 3.49
1102 2632 1.210967 GGTATCCAATTGGGGACGTCA 59.789 52.381 24.29 3.29 40.44 4.35
1123 2653 0.309302 CAATGAACCGCACGTCCAAA 59.691 50.000 0.00 0.00 0.00 3.28
1271 2801 0.100503 AACAGCAACGACAAACCTGC 59.899 50.000 0.00 0.00 34.96 4.85
1284 2814 3.056107 ACAAACCTGCTAGATACGAAGCA 60.056 43.478 0.00 0.00 46.11 3.91
1286 2816 5.163447 ACAAACCTGCTAGATACGAAGCATA 60.163 40.000 0.00 0.00 46.96 3.14
1301 2831 2.659428 AGCATATTTGGTTGAGGAGGC 58.341 47.619 0.00 0.00 0.00 4.70
1328 2858 2.434884 CACGCGCACCCTCATCTT 60.435 61.111 5.73 0.00 0.00 2.40
1349 2879 2.007608 CTTTAGCCCCGTGAACTAAGC 58.992 52.381 0.00 0.00 0.00 3.09
1464 2997 9.883142 TTGAATTTGAGATAACAAGTTTTTGGT 57.117 25.926 0.00 0.00 38.66 3.67
1485 3018 6.961576 TGGTCTACAAATTTCAAAACGGTAG 58.038 36.000 0.00 0.00 0.00 3.18
1514 3132 7.613585 TGCTCCATCATTAAATTGTCAACATT 58.386 30.769 0.00 0.00 0.00 2.71
1527 3145 6.546428 TTGTCAACATTAAAAAGTTCCCCA 57.454 33.333 0.00 0.00 0.00 4.96
1540 3158 4.519906 AGTTCCCCAGAAGAAAAACTGA 57.480 40.909 0.00 0.00 36.38 3.41
1548 3166 6.434028 CCCCAGAAGAAAAACTGATTGTCATA 59.566 38.462 0.00 0.00 36.38 2.15
1583 3209 3.838244 TTCTCGGCATTATACTTGGCT 57.162 42.857 6.79 0.00 37.50 4.75
1618 3251 5.014858 GGTGCTATGTACTATAGGCTACCA 58.985 45.833 4.43 0.00 0.00 3.25
1624 3257 1.771565 ACTATAGGCTACCACGCACA 58.228 50.000 4.43 0.00 0.00 4.57
1714 3347 5.766150 TTGACTTTATCTGTGTTGGGTTG 57.234 39.130 0.00 0.00 0.00 3.77
1735 3368 9.781633 GGGTTGGTTTTTAACTATATTTTGGTT 57.218 29.630 0.00 0.00 0.00 3.67
1771 3404 5.968676 TCTTATATTGTGTTGGGCTACCT 57.031 39.130 0.00 0.00 37.76 3.08
1788 3421 4.622220 GCTACCTTTGGAGACGGTATTTGA 60.622 45.833 0.00 0.00 33.19 2.69
1790 3423 4.514401 ACCTTTGGAGACGGTATTTGATC 58.486 43.478 0.00 0.00 0.00 2.92
1823 3456 4.053295 GTGAACTTGTTCTAGCGTGGTTA 58.947 43.478 13.65 0.00 0.00 2.85
1824 3457 4.689345 GTGAACTTGTTCTAGCGTGGTTAT 59.311 41.667 13.65 0.00 0.00 1.89
1825 3458 4.688879 TGAACTTGTTCTAGCGTGGTTATG 59.311 41.667 13.65 0.00 0.00 1.90
1826 3459 3.596214 ACTTGTTCTAGCGTGGTTATGG 58.404 45.455 0.00 0.00 0.00 2.74
1827 3460 3.007614 ACTTGTTCTAGCGTGGTTATGGT 59.992 43.478 0.00 0.00 0.00 3.55
1828 3461 2.967362 TGTTCTAGCGTGGTTATGGTG 58.033 47.619 0.00 0.00 0.00 4.17
1829 3462 2.300723 TGTTCTAGCGTGGTTATGGTGT 59.699 45.455 0.00 0.00 0.00 4.16
1849 3482 3.252215 TGTCCTTACATGTTTCGGCTTTG 59.748 43.478 2.30 0.00 0.00 2.77
1850 3483 2.817258 TCCTTACATGTTTCGGCTTTGG 59.183 45.455 2.30 0.00 0.00 3.28
1856 3489 1.021202 TGTTTCGGCTTTGGTGTCAG 58.979 50.000 0.00 0.00 0.00 3.51
1857 3490 0.317854 GTTTCGGCTTTGGTGTCAGC 60.318 55.000 0.00 0.00 35.07 4.26
1881 3514 0.889186 GGTGATTGTGTGAGCCCGTT 60.889 55.000 0.00 0.00 0.00 4.44
1896 3529 2.853235 CCGTTGGGGGACTATATTCC 57.147 55.000 0.39 0.39 34.52 3.01
1897 3530 2.051692 CCGTTGGGGGACTATATTCCA 58.948 52.381 10.98 0.00 37.40 3.53
1898 3531 2.224450 CCGTTGGGGGACTATATTCCAC 60.224 54.545 10.98 7.12 38.52 4.02
1899 3532 2.436542 CGTTGGGGGACTATATTCCACA 59.563 50.000 13.02 7.50 41.45 4.17
1900 3533 3.072476 CGTTGGGGGACTATATTCCACAT 59.928 47.826 13.02 0.00 41.45 3.21
1901 3534 4.445735 CGTTGGGGGACTATATTCCACATT 60.446 45.833 13.02 0.00 41.45 2.71
1902 3535 4.993705 TGGGGGACTATATTCCACATTC 57.006 45.455 13.02 0.00 41.45 2.67
1903 3536 4.311613 TGGGGGACTATATTCCACATTCA 58.688 43.478 13.02 0.00 41.45 2.57
1904 3537 4.729370 TGGGGGACTATATTCCACATTCAA 59.271 41.667 13.02 0.00 41.45 2.69
1905 3538 5.194740 TGGGGGACTATATTCCACATTCAAA 59.805 40.000 13.02 0.00 41.45 2.69
1906 3539 5.535030 GGGGGACTATATTCCACATTCAAAC 59.465 44.000 13.02 0.00 41.45 2.93
1907 3540 6.126409 GGGGACTATATTCCACATTCAAACA 58.874 40.000 10.98 0.00 39.15 2.83
1908 3541 6.263168 GGGGACTATATTCCACATTCAAACAG 59.737 42.308 10.98 0.00 39.15 3.16
1909 3542 6.828785 GGGACTATATTCCACATTCAAACAGT 59.171 38.462 10.98 0.00 37.40 3.55
1910 3543 7.201732 GGGACTATATTCCACATTCAAACAGTG 60.202 40.741 10.98 0.00 37.40 3.66
1917 3550 4.977741 CACATTCAAACAGTGGAATTGC 57.022 40.909 0.00 0.00 31.63 3.56
1918 3551 4.624015 CACATTCAAACAGTGGAATTGCT 58.376 39.130 0.00 0.00 31.63 3.91
1919 3552 5.771469 CACATTCAAACAGTGGAATTGCTA 58.229 37.500 0.00 0.00 31.63 3.49
1920 3553 5.860182 CACATTCAAACAGTGGAATTGCTAG 59.140 40.000 0.00 0.00 31.63 3.42
1921 3554 5.536161 ACATTCAAACAGTGGAATTGCTAGT 59.464 36.000 0.00 0.00 31.63 2.57
1922 3555 6.714810 ACATTCAAACAGTGGAATTGCTAGTA 59.285 34.615 0.00 0.00 31.63 1.82
1923 3556 6.554334 TTCAAACAGTGGAATTGCTAGTAC 57.446 37.500 0.00 0.00 0.00 2.73
1924 3557 5.616270 TCAAACAGTGGAATTGCTAGTACA 58.384 37.500 0.00 0.00 0.00 2.90
1925 3558 6.058833 TCAAACAGTGGAATTGCTAGTACAA 58.941 36.000 0.00 0.00 0.00 2.41
1926 3559 6.544197 TCAAACAGTGGAATTGCTAGTACAAA 59.456 34.615 0.00 0.00 32.27 2.83
1927 3560 6.952773 AACAGTGGAATTGCTAGTACAAAA 57.047 33.333 0.00 0.00 32.27 2.44
1928 3561 6.952773 ACAGTGGAATTGCTAGTACAAAAA 57.047 33.333 0.00 0.00 32.27 1.94
1929 3562 7.524717 ACAGTGGAATTGCTAGTACAAAAAT 57.475 32.000 0.00 0.00 32.27 1.82
1930 3563 7.370383 ACAGTGGAATTGCTAGTACAAAAATG 58.630 34.615 0.00 0.00 32.27 2.32
1931 3564 7.014230 ACAGTGGAATTGCTAGTACAAAAATGT 59.986 33.333 0.00 0.00 32.27 2.71
1932 3565 7.867403 CAGTGGAATTGCTAGTACAAAAATGTT 59.133 33.333 0.00 0.00 32.27 2.71
1933 3566 9.073475 AGTGGAATTGCTAGTACAAAAATGTTA 57.927 29.630 0.00 0.00 32.27 2.41
1934 3567 9.124807 GTGGAATTGCTAGTACAAAAATGTTAC 57.875 33.333 0.00 0.00 32.27 2.50
1935 3568 9.073475 TGGAATTGCTAGTACAAAAATGTTACT 57.927 29.630 0.00 0.00 32.27 2.24
1936 3569 9.556030 GGAATTGCTAGTACAAAAATGTTACTC 57.444 33.333 0.00 0.00 32.27 2.59
1940 3573 8.615878 TGCTAGTACAAAAATGTTACTCATGT 57.384 30.769 0.00 0.00 36.81 3.21
1941 3574 9.062524 TGCTAGTACAAAAATGTTACTCATGTT 57.937 29.630 0.00 0.00 35.68 2.71
1942 3575 9.893305 GCTAGTACAAAAATGTTACTCATGTTT 57.107 29.630 0.00 0.00 42.68 2.83
1945 3578 9.950680 AGTACAAAAATGTTACTCATGTTTCAG 57.049 29.630 0.00 0.00 40.72 3.02
1946 3579 9.944663 GTACAAAAATGTTACTCATGTTTCAGA 57.055 29.630 0.00 0.00 40.72 3.27
1948 3581 9.868277 ACAAAAATGTTACTCATGTTTCAGAAA 57.132 25.926 0.00 0.00 40.72 2.52
1955 3588 9.778741 TGTTACTCATGTTTCAGAAATCTAAGT 57.221 29.630 0.00 4.44 0.00 2.24
1958 3591 8.545229 ACTCATGTTTCAGAAATCTAAGTCTG 57.455 34.615 0.00 0.00 42.23 3.51
1959 3592 8.370940 ACTCATGTTTCAGAAATCTAAGTCTGA 58.629 33.333 0.00 0.00 46.59 3.27
1964 3597 3.447586 TCAGAAATCTAAGTCTGACCCCG 59.552 47.826 3.76 0.00 44.12 5.73
1965 3598 3.447586 CAGAAATCTAAGTCTGACCCCGA 59.552 47.826 3.76 0.00 43.32 5.14
1966 3599 3.702045 AGAAATCTAAGTCTGACCCCGAG 59.298 47.826 3.76 0.00 0.00 4.63
1967 3600 1.404843 ATCTAAGTCTGACCCCGAGC 58.595 55.000 3.76 0.00 0.00 5.03
1968 3601 0.331954 TCTAAGTCTGACCCCGAGCT 59.668 55.000 3.76 0.00 0.00 4.09
1969 3602 0.741915 CTAAGTCTGACCCCGAGCTC 59.258 60.000 2.73 2.73 0.00 4.09
1970 3603 0.039180 TAAGTCTGACCCCGAGCTCA 59.961 55.000 15.40 0.00 0.00 4.26
1971 3604 0.616111 AAGTCTGACCCCGAGCTCAT 60.616 55.000 15.40 0.00 0.00 2.90
1972 3605 1.142748 GTCTGACCCCGAGCTCATG 59.857 63.158 15.40 3.74 0.00 3.07
1973 3606 2.202987 CTGACCCCGAGCTCATGC 60.203 66.667 15.40 0.00 40.05 4.06
1983 3616 3.851955 GCTCATGCTCCCCCAATG 58.148 61.111 0.00 0.00 36.03 2.82
1984 3617 1.228228 GCTCATGCTCCCCCAATGA 59.772 57.895 0.00 0.00 36.03 2.57
1985 3618 0.396139 GCTCATGCTCCCCCAATGAA 60.396 55.000 0.00 0.00 36.03 2.57
1986 3619 1.961435 GCTCATGCTCCCCCAATGAAA 60.961 52.381 0.00 0.00 36.03 2.69
1987 3620 2.029623 CTCATGCTCCCCCAATGAAAG 58.970 52.381 0.00 0.00 0.00 2.62
1988 3621 1.117150 CATGCTCCCCCAATGAAAGG 58.883 55.000 0.00 0.00 0.00 3.11
1989 3622 0.712380 ATGCTCCCCCAATGAAAGGT 59.288 50.000 0.00 0.00 0.00 3.50
1990 3623 1.377690 TGCTCCCCCAATGAAAGGTA 58.622 50.000 0.00 0.00 0.00 3.08
1991 3624 1.713647 TGCTCCCCCAATGAAAGGTAA 59.286 47.619 0.00 0.00 0.00 2.85
1992 3625 2.291540 TGCTCCCCCAATGAAAGGTAAG 60.292 50.000 0.00 0.00 0.00 2.34
1993 3626 2.950418 GCTCCCCCAATGAAAGGTAAGG 60.950 54.545 0.00 0.00 0.00 2.69
1994 3627 2.580783 CTCCCCCAATGAAAGGTAAGGA 59.419 50.000 0.00 0.00 0.00 3.36
1995 3628 2.997463 TCCCCCAATGAAAGGTAAGGAA 59.003 45.455 0.00 0.00 0.00 3.36
1996 3629 3.403051 TCCCCCAATGAAAGGTAAGGAAA 59.597 43.478 0.00 0.00 0.00 3.13
1997 3630 4.046618 TCCCCCAATGAAAGGTAAGGAAAT 59.953 41.667 0.00 0.00 0.00 2.17
1998 3631 5.256626 TCCCCCAATGAAAGGTAAGGAAATA 59.743 40.000 0.00 0.00 0.00 1.40
1999 3632 5.961421 CCCCCAATGAAAGGTAAGGAAATAA 59.039 40.000 0.00 0.00 0.00 1.40
2000 3633 6.442244 CCCCCAATGAAAGGTAAGGAAATAAA 59.558 38.462 0.00 0.00 0.00 1.40
2001 3634 7.037945 CCCCCAATGAAAGGTAAGGAAATAAAA 60.038 37.037 0.00 0.00 0.00 1.52
2002 3635 8.548025 CCCCAATGAAAGGTAAGGAAATAAAAT 58.452 33.333 0.00 0.00 0.00 1.82
2003 3636 9.382275 CCCAATGAAAGGTAAGGAAATAAAATG 57.618 33.333 0.00 0.00 0.00 2.32
2004 3637 9.942850 CCAATGAAAGGTAAGGAAATAAAATGT 57.057 29.630 0.00 0.00 0.00 2.71
2054 3687 8.452989 AAAATTACGCATCAAAGATGAAAGAC 57.547 30.769 10.95 0.00 39.49 3.01
2055 3688 6.992063 ATTACGCATCAAAGATGAAAGACT 57.008 33.333 10.95 0.00 39.49 3.24
2056 3689 4.935885 ACGCATCAAAGATGAAAGACTC 57.064 40.909 10.95 0.00 39.49 3.36
2057 3690 4.573900 ACGCATCAAAGATGAAAGACTCT 58.426 39.130 10.95 0.00 39.49 3.24
2058 3691 4.999950 ACGCATCAAAGATGAAAGACTCTT 59.000 37.500 10.95 0.00 39.49 2.85
2059 3692 5.121454 ACGCATCAAAGATGAAAGACTCTTC 59.879 40.000 10.95 0.00 39.49 2.87
2060 3693 5.350914 CGCATCAAAGATGAAAGACTCTTCT 59.649 40.000 10.95 0.00 39.61 2.85
2061 3694 6.533012 CGCATCAAAGATGAAAGACTCTTCTA 59.467 38.462 10.95 0.00 37.53 2.10
2062 3695 7.254050 CGCATCAAAGATGAAAGACTCTTCTAG 60.254 40.741 10.95 0.00 37.53 2.43
2063 3696 7.548780 GCATCAAAGATGAAAGACTCTTCTAGT 59.451 37.037 10.95 0.00 39.29 2.57
2064 3697 8.871862 CATCAAAGATGAAAGACTCTTCTAGTG 58.128 37.037 0.77 0.00 37.60 2.74
2065 3698 6.870965 TCAAAGATGAAAGACTCTTCTAGTGC 59.129 38.462 0.00 0.00 37.53 4.40
2066 3699 4.992688 AGATGAAAGACTCTTCTAGTGCG 58.007 43.478 0.00 0.00 39.07 5.34
2067 3700 4.461081 AGATGAAAGACTCTTCTAGTGCGT 59.539 41.667 0.00 0.00 39.07 5.24
2068 3701 5.648526 AGATGAAAGACTCTTCTAGTGCGTA 59.351 40.000 0.00 0.00 39.07 4.42
2069 3702 5.044428 TGAAAGACTCTTCTAGTGCGTAC 57.956 43.478 0.00 0.00 39.07 3.67
2070 3703 4.517832 TGAAAGACTCTTCTAGTGCGTACA 59.482 41.667 6.38 0.00 39.07 2.90
2071 3704 5.009310 TGAAAGACTCTTCTAGTGCGTACAA 59.991 40.000 6.38 0.00 39.07 2.41
2072 3705 5.449107 AAGACTCTTCTAGTGCGTACAAA 57.551 39.130 6.38 0.00 39.07 2.83
2073 3706 4.796369 AGACTCTTCTAGTGCGTACAAAC 58.204 43.478 6.38 0.00 39.07 2.93
2074 3707 4.519730 AGACTCTTCTAGTGCGTACAAACT 59.480 41.667 6.38 3.21 39.07 2.66
2075 3708 5.009811 AGACTCTTCTAGTGCGTACAAACTT 59.990 40.000 6.38 0.00 39.07 2.66
2076 3709 5.598769 ACTCTTCTAGTGCGTACAAACTTT 58.401 37.500 6.38 0.00 36.93 2.66
2077 3710 6.047231 ACTCTTCTAGTGCGTACAAACTTTT 58.953 36.000 6.38 0.00 36.93 2.27
2078 3711 6.018994 ACTCTTCTAGTGCGTACAAACTTTTG 60.019 38.462 6.38 0.00 39.52 2.44
2079 3712 4.461992 TCTAGTGCGTACAAACTTTTGC 57.538 40.909 6.38 0.00 41.79 3.68
2080 3713 3.872182 TCTAGTGCGTACAAACTTTTGCA 59.128 39.130 6.38 0.00 41.79 4.08
2082 3715 2.792749 GTGCGTACAAACTTTTGCACT 58.207 42.857 7.80 0.00 46.69 4.40
2083 3716 2.529894 GTGCGTACAAACTTTTGCACTG 59.470 45.455 7.80 0.00 46.69 3.66
2084 3717 2.420372 TGCGTACAAACTTTTGCACTGA 59.580 40.909 1.49 0.00 41.79 3.41
2085 3718 3.035942 GCGTACAAACTTTTGCACTGAG 58.964 45.455 1.49 0.00 41.79 3.35
2086 3719 3.242608 GCGTACAAACTTTTGCACTGAGA 60.243 43.478 1.49 0.00 41.79 3.27
2087 3720 4.554723 GCGTACAAACTTTTGCACTGAGAT 60.555 41.667 1.49 0.00 41.79 2.75
2088 3721 4.905866 CGTACAAACTTTTGCACTGAGATG 59.094 41.667 1.49 0.00 41.79 2.90
2089 3722 4.311816 ACAAACTTTTGCACTGAGATGG 57.688 40.909 1.49 0.00 41.79 3.51
2090 3723 3.054878 CAAACTTTTGCACTGAGATGGC 58.945 45.455 0.00 0.00 0.00 4.40
2091 3724 1.985473 ACTTTTGCACTGAGATGGCA 58.015 45.000 0.00 0.00 35.41 4.92
2092 3725 2.522185 ACTTTTGCACTGAGATGGCAT 58.478 42.857 0.00 0.00 37.39 4.40
2093 3726 2.490903 ACTTTTGCACTGAGATGGCATC 59.509 45.455 19.78 19.78 37.39 3.91
2094 3727 1.466856 TTTGCACTGAGATGGCATCC 58.533 50.000 23.33 15.10 37.39 3.51
2095 3728 0.745486 TTGCACTGAGATGGCATCCG 60.745 55.000 23.33 14.42 37.39 4.18
2096 3729 1.144716 GCACTGAGATGGCATCCGA 59.855 57.895 23.33 9.64 0.00 4.55
2097 3730 0.879400 GCACTGAGATGGCATCCGAG 60.879 60.000 23.33 20.01 0.00 4.63
2098 3731 0.249784 CACTGAGATGGCATCCGAGG 60.250 60.000 23.33 13.43 0.00 4.63
2099 3732 0.397675 ACTGAGATGGCATCCGAGGA 60.398 55.000 23.33 0.00 0.00 3.71
2100 3733 0.317799 CTGAGATGGCATCCGAGGAG 59.682 60.000 23.33 8.79 0.00 3.69
2101 3734 1.005156 GAGATGGCATCCGAGGAGC 60.005 63.158 23.33 0.00 0.00 4.70
2102 3735 1.459158 AGATGGCATCCGAGGAGCT 60.459 57.895 23.33 0.00 0.00 4.09
2103 3736 1.005156 GATGGCATCCGAGGAGCTC 60.005 63.158 16.75 4.71 0.00 4.09
2115 3748 3.814005 GAGGAGCTCGGTATACCAAAA 57.186 47.619 21.76 5.67 35.14 2.44
2116 3749 4.133013 GAGGAGCTCGGTATACCAAAAA 57.867 45.455 21.76 3.23 35.14 1.94
2162 3795 5.893897 TTTTTGCAGCTTTGGACATTTTT 57.106 30.435 0.00 0.00 0.00 1.94
2186 3819 9.965748 TTTTTAGCTTTCATTTCGTTTTCTTTG 57.034 25.926 0.00 0.00 0.00 2.77
2187 3820 8.696410 TTTAGCTTTCATTTCGTTTTCTTTGT 57.304 26.923 0.00 0.00 0.00 2.83
2188 3821 9.790389 TTTAGCTTTCATTTCGTTTTCTTTGTA 57.210 25.926 0.00 0.00 0.00 2.41
2189 3822 7.679659 AGCTTTCATTTCGTTTTCTTTGTAC 57.320 32.000 0.00 0.00 0.00 2.90
2190 3823 6.695713 AGCTTTCATTTCGTTTTCTTTGTACC 59.304 34.615 0.00 0.00 0.00 3.34
2191 3824 6.344702 GCTTTCATTTCGTTTTCTTTGTACCG 60.345 38.462 0.00 0.00 0.00 4.02
2192 3825 5.987777 TCATTTCGTTTTCTTTGTACCGA 57.012 34.783 0.00 0.00 0.00 4.69
2193 3826 5.981174 TCATTTCGTTTTCTTTGTACCGAG 58.019 37.500 0.00 0.00 0.00 4.63
2194 3827 3.865224 TTCGTTTTCTTTGTACCGAGC 57.135 42.857 0.00 0.00 0.00 5.03
2195 3828 3.102052 TCGTTTTCTTTGTACCGAGCT 57.898 42.857 0.00 0.00 0.00 4.09
2196 3829 3.054878 TCGTTTTCTTTGTACCGAGCTC 58.945 45.455 2.73 2.73 0.00 4.09
2197 3830 2.157085 CGTTTTCTTTGTACCGAGCTCC 59.843 50.000 8.47 0.00 0.00 4.70
2198 3831 3.400255 GTTTTCTTTGTACCGAGCTCCT 58.600 45.455 8.47 0.00 0.00 3.69
2199 3832 3.314541 TTTCTTTGTACCGAGCTCCTC 57.685 47.619 8.47 0.00 0.00 3.71
2212 3845 4.046938 GAGCTCCTCGAATGTAATGTCA 57.953 45.455 0.87 0.00 0.00 3.58
2213 3846 4.047822 GAGCTCCTCGAATGTAATGTCAG 58.952 47.826 0.87 0.00 0.00 3.51
2214 3847 2.541762 GCTCCTCGAATGTAATGTCAGC 59.458 50.000 0.00 0.00 0.00 4.26
2215 3848 2.791560 CTCCTCGAATGTAATGTCAGCG 59.208 50.000 0.00 0.00 0.00 5.18
2216 3849 2.165641 TCCTCGAATGTAATGTCAGCGT 59.834 45.455 0.00 0.00 0.00 5.07
2217 3850 2.282555 CCTCGAATGTAATGTCAGCGTG 59.717 50.000 0.00 0.00 0.00 5.34
2218 3851 3.179048 CTCGAATGTAATGTCAGCGTGA 58.821 45.455 0.00 0.00 0.00 4.35
2219 3852 3.580731 TCGAATGTAATGTCAGCGTGAA 58.419 40.909 0.00 0.00 0.00 3.18
2220 3853 3.991121 TCGAATGTAATGTCAGCGTGAAA 59.009 39.130 0.00 0.00 0.00 2.69
2221 3854 4.081761 CGAATGTAATGTCAGCGTGAAAC 58.918 43.478 0.00 0.00 0.00 2.78
2222 3855 4.143115 CGAATGTAATGTCAGCGTGAAACT 60.143 41.667 0.00 0.00 31.75 2.66
2223 3856 5.614668 CGAATGTAATGTCAGCGTGAAACTT 60.615 40.000 0.00 0.00 31.75 2.66
2224 3857 5.689383 ATGTAATGTCAGCGTGAAACTTT 57.311 34.783 0.00 0.00 31.75 2.66
2225 3858 4.843147 TGTAATGTCAGCGTGAAACTTTG 58.157 39.130 0.00 0.00 31.75 2.77
2226 3859 2.405892 ATGTCAGCGTGAAACTTTGC 57.594 45.000 0.00 0.00 31.75 3.68
2227 3860 1.090728 TGTCAGCGTGAAACTTTGCA 58.909 45.000 0.00 0.00 31.75 4.08
2228 3861 1.470494 TGTCAGCGTGAAACTTTGCAA 59.530 42.857 0.00 0.00 31.75 4.08
2229 3862 2.111756 GTCAGCGTGAAACTTTGCAAG 58.888 47.619 0.00 0.00 31.75 4.01
2230 3863 0.848305 CAGCGTGAAACTTTGCAAGC 59.152 50.000 0.00 0.00 39.31 4.01
2231 3864 0.455410 AGCGTGAAACTTTGCAAGCA 59.545 45.000 10.08 0.00 41.04 3.91
2232 3865 0.572125 GCGTGAAACTTTGCAAGCAC 59.428 50.000 0.00 4.10 38.95 4.40
2233 3866 1.199624 CGTGAAACTTTGCAAGCACC 58.800 50.000 0.00 0.00 31.75 5.01
2234 3867 1.202290 CGTGAAACTTTGCAAGCACCT 60.202 47.619 0.00 0.00 31.75 4.00
2235 3868 2.032799 CGTGAAACTTTGCAAGCACCTA 59.967 45.455 0.00 0.00 31.75 3.08
2236 3869 3.632189 GTGAAACTTTGCAAGCACCTAG 58.368 45.455 0.00 0.00 0.00 3.02
2237 3870 3.315191 GTGAAACTTTGCAAGCACCTAGA 59.685 43.478 0.00 0.00 0.00 2.43
2238 3871 3.951037 TGAAACTTTGCAAGCACCTAGAA 59.049 39.130 0.00 0.00 0.00 2.10
2239 3872 4.036734 TGAAACTTTGCAAGCACCTAGAAG 59.963 41.667 0.00 0.00 0.00 2.85
2240 3873 3.492102 ACTTTGCAAGCACCTAGAAGA 57.508 42.857 9.63 0.00 0.00 2.87
2241 3874 3.820557 ACTTTGCAAGCACCTAGAAGAA 58.179 40.909 9.63 0.00 0.00 2.52
2242 3875 4.401925 ACTTTGCAAGCACCTAGAAGAAT 58.598 39.130 9.63 0.00 0.00 2.40
2243 3876 4.457257 ACTTTGCAAGCACCTAGAAGAATC 59.543 41.667 9.63 0.00 0.00 2.52
2244 3877 3.988976 TGCAAGCACCTAGAAGAATCT 57.011 42.857 0.00 0.00 39.82 2.40
2245 3878 3.866651 TGCAAGCACCTAGAAGAATCTC 58.133 45.455 0.00 0.00 37.10 2.75
2246 3879 3.517100 TGCAAGCACCTAGAAGAATCTCT 59.483 43.478 0.00 0.00 37.10 3.10
2247 3880 4.119136 GCAAGCACCTAGAAGAATCTCTC 58.881 47.826 0.00 0.00 37.10 3.20
2248 3881 4.382470 GCAAGCACCTAGAAGAATCTCTCA 60.382 45.833 0.00 0.00 37.10 3.27
2249 3882 5.684552 GCAAGCACCTAGAAGAATCTCTCAT 60.685 44.000 0.00 0.00 37.10 2.90
2250 3883 5.789643 AGCACCTAGAAGAATCTCTCATC 57.210 43.478 0.00 0.00 37.10 2.92
2251 3884 5.457686 AGCACCTAGAAGAATCTCTCATCT 58.542 41.667 0.00 0.00 36.16 2.90
2252 3885 5.898972 AGCACCTAGAAGAATCTCTCATCTT 59.101 40.000 0.00 0.00 38.56 2.40
2253 3886 6.383726 AGCACCTAGAAGAATCTCTCATCTTT 59.616 38.462 0.00 0.00 36.08 2.52
2254 3887 6.479660 GCACCTAGAAGAATCTCTCATCTTTG 59.520 42.308 0.00 0.00 36.08 2.77
2255 3888 7.632462 GCACCTAGAAGAATCTCTCATCTTTGA 60.632 40.741 0.00 0.00 36.08 2.69
2256 3889 8.423349 CACCTAGAAGAATCTCTCATCTTTGAT 58.577 37.037 0.00 0.00 36.08 2.57
2257 3890 8.423349 ACCTAGAAGAATCTCTCATCTTTGATG 58.577 37.037 0.00 1.45 36.08 3.07
2258 3891 8.423349 CCTAGAAGAATCTCTCATCTTTGATGT 58.577 37.037 7.33 0.00 36.08 3.06
2259 3892 9.251792 CTAGAAGAATCTCTCATCTTTGATGTG 57.748 37.037 7.33 5.58 36.08 3.21
2260 3893 7.622713 AGAAGAATCTCTCATCTTTGATGTGT 58.377 34.615 7.33 0.00 36.08 3.72
2261 3894 8.756927 AGAAGAATCTCTCATCTTTGATGTGTA 58.243 33.333 7.33 0.64 36.08 2.90
2262 3895 9.376075 GAAGAATCTCTCATCTTTGATGTGTAA 57.624 33.333 7.33 0.39 36.08 2.41
2263 3896 9.730705 AAGAATCTCTCATCTTTGATGTGTAAA 57.269 29.630 7.33 0.00 32.05 2.01
2264 3897 9.730705 AGAATCTCTCATCTTTGATGTGTAAAA 57.269 29.630 7.33 0.00 0.00 1.52
2317 3950 4.846779 TTGAATTACTTCACTTGGGTGC 57.153 40.909 0.00 0.00 41.05 5.01
2318 3951 3.826524 TGAATTACTTCACTTGGGTGCA 58.173 40.909 0.00 0.00 42.72 4.57
2319 3952 4.406456 TGAATTACTTCACTTGGGTGCAT 58.594 39.130 0.00 0.00 42.72 3.96
2320 3953 4.458989 TGAATTACTTCACTTGGGTGCATC 59.541 41.667 0.00 0.00 42.72 3.91
2321 3954 3.788227 TTACTTCACTTGGGTGCATCT 57.212 42.857 0.00 0.00 42.72 2.90
2322 3955 2.191128 ACTTCACTTGGGTGCATCTC 57.809 50.000 0.00 0.00 42.72 2.75
2323 3956 1.421268 ACTTCACTTGGGTGCATCTCA 59.579 47.619 0.00 0.00 42.72 3.27
2324 3957 2.040813 ACTTCACTTGGGTGCATCTCAT 59.959 45.455 0.00 0.00 42.72 2.90
2325 3958 2.118313 TCACTTGGGTGCATCTCATG 57.882 50.000 0.00 0.00 42.72 3.07
2326 3959 1.100510 CACTTGGGTGCATCTCATGG 58.899 55.000 0.00 0.00 36.61 3.66
2327 3960 0.700564 ACTTGGGTGCATCTCATGGT 59.299 50.000 0.00 0.00 0.00 3.55
2328 3961 1.076024 ACTTGGGTGCATCTCATGGTT 59.924 47.619 0.00 0.00 0.00 3.67
2329 3962 2.173519 CTTGGGTGCATCTCATGGTTT 58.826 47.619 0.00 0.00 0.00 3.27
2330 3963 1.838112 TGGGTGCATCTCATGGTTTC 58.162 50.000 0.00 0.00 0.00 2.78
2331 3964 1.106285 GGGTGCATCTCATGGTTTCC 58.894 55.000 0.00 0.00 0.00 3.13
2332 3965 1.616725 GGGTGCATCTCATGGTTTCCA 60.617 52.381 0.00 0.00 38.19 3.53
2333 3966 2.170166 GGTGCATCTCATGGTTTCCAA 58.830 47.619 0.00 0.00 36.95 3.53
2334 3967 2.762327 GGTGCATCTCATGGTTTCCAAT 59.238 45.455 0.00 0.00 36.95 3.16
2335 3968 3.196254 GGTGCATCTCATGGTTTCCAATT 59.804 43.478 0.00 0.00 36.95 2.32
2336 3969 4.427312 GTGCATCTCATGGTTTCCAATTC 58.573 43.478 0.00 0.00 36.95 2.17
2337 3970 4.159135 GTGCATCTCATGGTTTCCAATTCT 59.841 41.667 0.00 0.00 36.95 2.40
2338 3971 4.773674 TGCATCTCATGGTTTCCAATTCTT 59.226 37.500 0.00 0.00 36.95 2.52
2339 3972 5.105635 TGCATCTCATGGTTTCCAATTCTTC 60.106 40.000 0.00 0.00 36.95 2.87
2340 3973 5.126707 GCATCTCATGGTTTCCAATTCTTCT 59.873 40.000 0.00 0.00 36.95 2.85
2341 3974 6.350780 GCATCTCATGGTTTCCAATTCTTCTT 60.351 38.462 0.00 0.00 36.95 2.52
2342 3975 7.609056 CATCTCATGGTTTCCAATTCTTCTTT 58.391 34.615 0.00 0.00 36.95 2.52
2343 3976 7.601705 TCTCATGGTTTCCAATTCTTCTTTT 57.398 32.000 0.00 0.00 36.95 2.27
2344 3977 8.021898 TCTCATGGTTTCCAATTCTTCTTTTT 57.978 30.769 0.00 0.00 36.95 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 7.743749 AGTCCTTCATCTTTGATGCATACTAT 58.256 34.615 0.00 0.00 0.00 2.12
46 47 7.070447 AGAGTCCTTCATCTTTGATGCATACTA 59.930 37.037 0.00 0.00 0.00 1.82
47 48 5.999044 AGTCCTTCATCTTTGATGCATACT 58.001 37.500 0.00 0.00 0.00 2.12
48 49 6.054295 AGAGTCCTTCATCTTTGATGCATAC 58.946 40.000 0.00 0.00 0.00 2.39
51 60 4.564782 AGAGTCCTTCATCTTTGATGCA 57.435 40.909 0.00 0.00 0.00 3.96
66 75 2.089980 TGTACGCACCTAGAAGAGTCC 58.910 52.381 0.00 0.00 0.00 3.85
74 83 5.049680 AGTGTGAAAATTTGTACGCACCTAG 60.050 40.000 21.77 0.00 42.34 3.02
77 86 3.728718 CAGTGTGAAAATTTGTACGCACC 59.271 43.478 21.77 11.77 42.34 5.01
84 93 6.698008 TGTCATCTCAGTGTGAAAATTTGT 57.302 33.333 0.00 0.00 0.00 2.83
103 112 2.060383 CCAGGCTCCTCGGATGTCA 61.060 63.158 0.00 0.00 0.00 3.58
105 114 1.043673 GTACCAGGCTCCTCGGATGT 61.044 60.000 10.13 0.00 0.00 3.06
118 127 5.666969 TCGATTCTGTGTTTTTGTACCAG 57.333 39.130 0.00 0.00 0.00 4.00
119 128 5.504994 GCTTCGATTCTGTGTTTTTGTACCA 60.505 40.000 0.00 0.00 0.00 3.25
156 168 7.041635 TGAAAGATCAAAAGATGAAGTTGCA 57.958 32.000 0.00 0.00 42.54 4.08
157 169 8.530269 AATGAAAGATCAAAAGATGAAGTTGC 57.470 30.769 0.00 0.00 42.54 4.17
174 188 8.244802 TCGGTACAAAGAAAACAAAATGAAAGA 58.755 29.630 0.00 0.00 0.00 2.52
179 193 7.043656 GGAGTTCGGTACAAAGAAAACAAAATG 60.044 37.037 0.00 0.00 0.00 2.32
182 196 5.648960 AGGAGTTCGGTACAAAGAAAACAAA 59.351 36.000 0.00 0.00 0.00 2.83
196 210 2.145397 TGCTATCTGAGGAGTTCGGT 57.855 50.000 0.00 0.00 33.64 4.69
199 213 4.619973 CTGACATGCTATCTGAGGAGTTC 58.380 47.826 0.00 0.00 0.00 3.01
201 215 2.364970 GCTGACATGCTATCTGAGGAGT 59.635 50.000 0.00 0.00 0.00 3.85
212 226 0.250467 AAGTTCCACGCTGACATGCT 60.250 50.000 0.00 0.00 0.00 3.79
213 227 0.166814 GAAGTTCCACGCTGACATGC 59.833 55.000 0.00 0.00 0.00 4.06
226 240 2.450609 TCTAGGTGGTTGCGAAGTTC 57.549 50.000 0.00 0.00 0.00 3.01
232 246 3.118956 AGAGATTCTTCTAGGTGGTTGCG 60.119 47.826 0.00 0.00 30.30 4.85
292 307 9.099454 GAGTGAAGTAATTCGAAATGATAACCT 57.901 33.333 0.00 0.00 0.00 3.50
300 315 4.092968 GCACCGAGTGAAGTAATTCGAAAT 59.907 41.667 0.00 0.00 35.23 2.17
304 319 2.333926 TGCACCGAGTGAAGTAATTCG 58.666 47.619 8.04 0.00 35.23 3.34
318 333 1.002366 GCTCAAGTACATCTGCACCG 58.998 55.000 0.00 0.00 0.00 4.94
332 347 2.683867 GAGAGTAGCGTTAGGAGCTCAA 59.316 50.000 17.19 0.00 44.79 3.02
333 348 2.290464 GAGAGTAGCGTTAGGAGCTCA 58.710 52.381 17.19 0.00 44.79 4.26
345 360 4.479786 AAGGAATCACAAGGAGAGTAGC 57.520 45.455 0.00 0.00 0.00 3.58
375 390 7.773149 AGATTCCTAGTGTATAATGTATCCGC 58.227 38.462 0.00 0.00 0.00 5.54
410 432 6.534793 TCATATGCACGTGCGAAATGATATAT 59.465 34.615 31.56 24.28 45.83 0.86
411 433 5.866633 TCATATGCACGTGCGAAATGATATA 59.133 36.000 31.56 23.44 45.83 0.86
412 434 4.690280 TCATATGCACGTGCGAAATGATAT 59.310 37.500 31.56 25.33 45.83 1.63
414 436 2.871633 TCATATGCACGTGCGAAATGAT 59.128 40.909 31.56 23.50 45.83 2.45
420 442 1.720805 AAACTCATATGCACGTGCGA 58.279 45.000 33.22 24.65 45.83 5.10
545 567 1.135517 ACGCGGTTGTTGGAAATATGC 60.136 47.619 12.47 0.00 0.00 3.14
560 582 0.457166 TGTCGATTAGGACAACGCGG 60.457 55.000 12.47 0.00 43.55 6.46
570 592 5.153513 CCACAAATGGTGTTTGTCGATTAG 58.846 41.667 3.38 0.00 46.44 1.73
620 642 6.288941 TCGATCTATTCCAAAGGTGTACAA 57.711 37.500 0.00 0.00 0.00 2.41
694 717 2.550855 CCAGCTGTTGTAAGAGGCTTGA 60.551 50.000 13.81 0.00 0.00 3.02
815 838 7.071196 TCCACCATAAGCAATTCAGTAGTATCT 59.929 37.037 0.00 0.00 0.00 1.98
899 922 7.394077 TGTTGTTGTGATGATTAGGTGAATGAT 59.606 33.333 0.00 0.00 0.00 2.45
912 937 4.946772 TCAAGGTTCTTGTTGTTGTGATGA 59.053 37.500 7.42 0.00 0.00 2.92
915 940 5.417266 TCAATCAAGGTTCTTGTTGTTGTGA 59.583 36.000 7.42 0.00 0.00 3.58
1020 2550 1.867233 ACAACGGCGATAATGATGAGC 59.133 47.619 16.62 0.00 0.00 4.26
1030 2560 1.922135 GCCACATCAACAACGGCGAT 61.922 55.000 16.62 0.00 32.14 4.58
1043 2573 0.751643 GGCAACGGGATAAGCCACAT 60.752 55.000 0.00 0.00 46.26 3.21
1044 2574 1.377987 GGCAACGGGATAAGCCACA 60.378 57.895 0.00 0.00 46.26 4.17
1080 2610 1.850345 ACGTCCCCAATTGGATACCAT 59.150 47.619 26.60 9.79 36.63 3.55
1102 2632 0.816018 TGGACGTGCGGTTCATTGTT 60.816 50.000 1.60 0.00 0.00 2.83
1271 2801 7.116948 CCTCAACCAAATATGCTTCGTATCTAG 59.883 40.741 0.00 0.00 0.00 2.43
1284 2814 4.307259 TCCTAGCCTCCTCAACCAAATAT 58.693 43.478 0.00 0.00 0.00 1.28
1286 2816 2.507471 CTCCTAGCCTCCTCAACCAAAT 59.493 50.000 0.00 0.00 0.00 2.32
1301 2831 2.432456 TGCGCGTGTTGCTCCTAG 60.432 61.111 8.43 0.00 43.27 3.02
1328 2858 2.354403 GCTTAGTTCACGGGGCTAAAGA 60.354 50.000 4.65 0.00 0.00 2.52
1443 2976 9.179909 TGTAGACCAAAAACTTGTTATCTCAAA 57.820 29.630 0.00 0.00 0.00 2.69
1464 2997 7.571080 AACCTACCGTTTTGAAATTTGTAGA 57.429 32.000 0.00 0.00 0.00 2.59
1485 3018 6.397272 TGACAATTTAATGATGGAGCAAACC 58.603 36.000 0.00 0.00 0.00 3.27
1514 3132 7.397761 TCAGTTTTTCTTCTGGGGAACTTTTTA 59.602 33.333 0.00 0.00 33.13 1.52
1527 3145 8.579006 TGCAATATGACAATCAGTTTTTCTTCT 58.421 29.630 0.00 0.00 0.00 2.85
1540 3158 6.932356 AAAGTCGAGATGCAATATGACAAT 57.068 33.333 12.92 1.87 0.00 2.71
1548 3166 2.932614 CCGAGAAAAGTCGAGATGCAAT 59.067 45.455 0.00 0.00 42.85 3.56
1583 3209 4.870123 ACATAGCACCAAGAAATTGCAA 57.130 36.364 0.00 0.00 0.00 4.08
1624 3257 1.135373 AGTGAAGAACGATGCGACGAT 60.135 47.619 0.00 0.00 37.03 3.73
1629 3262 1.136252 CCACAAGTGAAGAACGATGCG 60.136 52.381 0.94 0.00 0.00 4.73
1632 3265 3.703001 ATCCCACAAGTGAAGAACGAT 57.297 42.857 0.94 0.00 0.00 3.73
1633 3266 3.485463 AATCCCACAAGTGAAGAACGA 57.515 42.857 0.94 0.00 0.00 3.85
1689 3322 6.783708 ACCCAACACAGATAAAGTCAAAAA 57.216 33.333 0.00 0.00 0.00 1.94
1746 3379 6.772716 AGGTAGCCCAACACAATATAAGAATG 59.227 38.462 0.00 0.00 0.00 2.67
1751 3384 5.654650 CCAAAGGTAGCCCAACACAATATAA 59.345 40.000 0.00 0.00 0.00 0.98
1760 3393 1.822506 GTCTCCAAAGGTAGCCCAAC 58.177 55.000 0.00 0.00 0.00 3.77
1771 3404 5.414789 TCAGATCAAATACCGTCTCCAAA 57.585 39.130 0.00 0.00 0.00 3.28
1788 3421 5.559148 ACAAGTTCACTCTCCTTTCAGAT 57.441 39.130 0.00 0.00 0.00 2.90
1790 3423 5.363939 AGAACAAGTTCACTCTCCTTTCAG 58.636 41.667 14.69 0.00 41.84 3.02
1823 3456 3.343617 CCGAAACATGTAAGGACACCAT 58.656 45.455 0.00 0.00 38.76 3.55
1824 3457 2.773487 CCGAAACATGTAAGGACACCA 58.227 47.619 0.00 0.00 38.76 4.17
1825 3458 1.467342 GCCGAAACATGTAAGGACACC 59.533 52.381 15.68 0.00 38.76 4.16
1826 3459 2.423577 AGCCGAAACATGTAAGGACAC 58.576 47.619 15.68 1.74 38.76 3.67
1827 3460 2.851263 AGCCGAAACATGTAAGGACA 57.149 45.000 15.68 0.00 40.72 4.02
1828 3461 3.365969 CCAAAGCCGAAACATGTAAGGAC 60.366 47.826 15.68 8.58 0.00 3.85
1829 3462 2.817258 CCAAAGCCGAAACATGTAAGGA 59.183 45.455 15.68 0.00 0.00 3.36
1849 3482 1.270550 CAATCACCTTTGGCTGACACC 59.729 52.381 0.00 0.00 0.00 4.16
1850 3483 1.956477 ACAATCACCTTTGGCTGACAC 59.044 47.619 0.00 0.00 0.00 3.67
1856 3489 1.336240 GCTCACACAATCACCTTTGGC 60.336 52.381 0.00 0.00 0.00 4.52
1857 3490 1.270550 GGCTCACACAATCACCTTTGG 59.729 52.381 0.00 0.00 0.00 3.28
1861 3494 1.003355 CGGGCTCACACAATCACCT 60.003 57.895 0.00 0.00 0.00 4.00
1881 3514 4.311613 TGAATGTGGAATATAGTCCCCCA 58.688 43.478 16.33 12.86 36.80 4.96
1885 3518 7.697691 CACTGTTTGAATGTGGAATATAGTCC 58.302 38.462 12.38 12.38 38.27 3.85
1896 3529 4.624015 AGCAATTCCACTGTTTGAATGTG 58.376 39.130 3.78 0.00 31.79 3.21
1897 3530 4.942761 AGCAATTCCACTGTTTGAATGT 57.057 36.364 3.78 0.00 31.79 2.71
1898 3531 6.017400 ACTAGCAATTCCACTGTTTGAATG 57.983 37.500 3.78 1.40 31.79 2.67
1899 3532 6.714810 TGTACTAGCAATTCCACTGTTTGAAT 59.285 34.615 0.00 0.00 32.72 2.57
1900 3533 6.058833 TGTACTAGCAATTCCACTGTTTGAA 58.941 36.000 0.00 0.00 0.00 2.69
1901 3534 5.616270 TGTACTAGCAATTCCACTGTTTGA 58.384 37.500 0.00 0.00 0.00 2.69
1902 3535 5.940192 TGTACTAGCAATTCCACTGTTTG 57.060 39.130 0.00 0.00 0.00 2.93
1903 3536 6.952773 TTTGTACTAGCAATTCCACTGTTT 57.047 33.333 0.00 0.00 0.00 2.83
1904 3537 6.952773 TTTTGTACTAGCAATTCCACTGTT 57.047 33.333 0.00 0.00 0.00 3.16
1905 3538 6.952773 TTTTTGTACTAGCAATTCCACTGT 57.047 33.333 0.00 0.00 0.00 3.55
1906 3539 7.370383 ACATTTTTGTACTAGCAATTCCACTG 58.630 34.615 0.00 0.00 0.00 3.66
1907 3540 7.524717 ACATTTTTGTACTAGCAATTCCACT 57.475 32.000 0.00 0.00 0.00 4.00
1908 3541 9.124807 GTAACATTTTTGTACTAGCAATTCCAC 57.875 33.333 0.00 0.00 0.00 4.02
1909 3542 9.073475 AGTAACATTTTTGTACTAGCAATTCCA 57.927 29.630 0.00 0.00 0.00 3.53
1910 3543 9.556030 GAGTAACATTTTTGTACTAGCAATTCC 57.444 33.333 0.00 0.00 0.00 3.01
1914 3547 9.062524 ACATGAGTAACATTTTTGTACTAGCAA 57.937 29.630 0.00 0.00 37.07 3.91
1915 3548 8.615878 ACATGAGTAACATTTTTGTACTAGCA 57.384 30.769 0.00 0.00 37.07 3.49
1916 3549 9.893305 AAACATGAGTAACATTTTTGTACTAGC 57.107 29.630 0.00 0.00 37.45 3.42
1919 3552 9.950680 CTGAAACATGAGTAACATTTTTGTACT 57.049 29.630 0.00 0.00 38.48 2.73
1920 3553 9.944663 TCTGAAACATGAGTAACATTTTTGTAC 57.055 29.630 0.00 0.00 38.48 2.90
1922 3555 9.868277 TTTCTGAAACATGAGTAACATTTTTGT 57.132 25.926 0.00 0.00 38.48 2.83
1929 3562 9.778741 ACTTAGATTTCTGAAACATGAGTAACA 57.221 29.630 4.73 0.00 0.00 2.41
1932 3565 9.645059 CAGACTTAGATTTCTGAAACATGAGTA 57.355 33.333 4.73 0.00 41.65 2.59
1933 3566 8.370940 TCAGACTTAGATTTCTGAAACATGAGT 58.629 33.333 4.73 8.87 44.19 3.41
1934 3567 8.768957 TCAGACTTAGATTTCTGAAACATGAG 57.231 34.615 4.73 5.93 44.19 2.90
1942 3575 3.447586 CGGGGTCAGACTTAGATTTCTGA 59.552 47.826 0.00 0.00 44.80 3.27
1943 3576 3.447586 TCGGGGTCAGACTTAGATTTCTG 59.552 47.826 0.00 0.00 40.65 3.02
1944 3577 3.702045 CTCGGGGTCAGACTTAGATTTCT 59.298 47.826 0.00 0.00 0.00 2.52
1945 3578 3.738590 GCTCGGGGTCAGACTTAGATTTC 60.739 52.174 0.00 0.00 0.00 2.17
1946 3579 2.168728 GCTCGGGGTCAGACTTAGATTT 59.831 50.000 0.00 0.00 0.00 2.17
1947 3580 1.757699 GCTCGGGGTCAGACTTAGATT 59.242 52.381 0.00 0.00 0.00 2.40
1948 3581 1.063567 AGCTCGGGGTCAGACTTAGAT 60.064 52.381 0.00 0.00 0.00 1.98
1949 3582 0.331954 AGCTCGGGGTCAGACTTAGA 59.668 55.000 0.00 0.00 0.00 2.10
1950 3583 0.741915 GAGCTCGGGGTCAGACTTAG 59.258 60.000 10.21 0.00 39.51 2.18
1951 3584 0.039180 TGAGCTCGGGGTCAGACTTA 59.961 55.000 14.37 0.00 43.82 2.24
1952 3585 1.228894 TGAGCTCGGGGTCAGACTT 60.229 57.895 14.37 0.00 43.82 3.01
1953 3586 2.441051 TGAGCTCGGGGTCAGACT 59.559 61.111 14.37 0.00 43.82 3.24
1966 3599 0.396139 TTCATTGGGGGAGCATGAGC 60.396 55.000 0.00 0.00 42.56 4.26
1967 3600 2.029623 CTTTCATTGGGGGAGCATGAG 58.970 52.381 0.00 0.00 0.00 2.90
1968 3601 1.342275 CCTTTCATTGGGGGAGCATGA 60.342 52.381 0.00 0.00 0.00 3.07
1969 3602 1.117150 CCTTTCATTGGGGGAGCATG 58.883 55.000 0.00 0.00 0.00 4.06
1970 3603 0.712380 ACCTTTCATTGGGGGAGCAT 59.288 50.000 0.00 0.00 0.00 3.79
1971 3604 1.377690 TACCTTTCATTGGGGGAGCA 58.622 50.000 0.00 0.00 0.00 4.26
1972 3605 2.379005 CTTACCTTTCATTGGGGGAGC 58.621 52.381 0.00 0.00 0.00 4.70
1973 3606 2.580783 TCCTTACCTTTCATTGGGGGAG 59.419 50.000 0.00 0.00 0.00 4.30
1974 3607 2.650013 TCCTTACCTTTCATTGGGGGA 58.350 47.619 0.00 0.00 0.00 4.81
1975 3608 3.466395 TTCCTTACCTTTCATTGGGGG 57.534 47.619 0.00 0.00 0.00 5.40
1976 3609 7.489239 TTTATTTCCTTACCTTTCATTGGGG 57.511 36.000 0.00 0.00 0.00 4.96
1977 3610 9.382275 CATTTTATTTCCTTACCTTTCATTGGG 57.618 33.333 0.00 0.00 0.00 4.12
1978 3611 9.942850 ACATTTTATTTCCTTACCTTTCATTGG 57.057 29.630 0.00 0.00 0.00 3.16
2028 3661 8.915654 GTCTTTCATCTTTGATGCGTAATTTTT 58.084 29.630 2.93 0.00 0.00 1.94
2029 3662 8.299570 AGTCTTTCATCTTTGATGCGTAATTTT 58.700 29.630 2.93 0.00 0.00 1.82
2030 3663 7.820648 AGTCTTTCATCTTTGATGCGTAATTT 58.179 30.769 2.93 0.00 0.00 1.82
2031 3664 7.335422 AGAGTCTTTCATCTTTGATGCGTAATT 59.665 33.333 2.93 0.00 0.00 1.40
2032 3665 6.820656 AGAGTCTTTCATCTTTGATGCGTAAT 59.179 34.615 2.93 0.00 0.00 1.89
2033 3666 6.166279 AGAGTCTTTCATCTTTGATGCGTAA 58.834 36.000 2.93 0.00 0.00 3.18
2034 3667 5.724328 AGAGTCTTTCATCTTTGATGCGTA 58.276 37.500 2.93 0.00 0.00 4.42
2035 3668 4.573900 AGAGTCTTTCATCTTTGATGCGT 58.426 39.130 2.93 0.00 0.00 5.24
2036 3669 5.350914 AGAAGAGTCTTTCATCTTTGATGCG 59.649 40.000 6.88 0.00 35.93 4.73
2037 3670 6.740411 AGAAGAGTCTTTCATCTTTGATGC 57.260 37.500 6.88 0.00 35.93 3.91
2038 3671 8.871862 CACTAGAAGAGTCTTTCATCTTTGATG 58.128 37.037 6.88 1.45 35.64 3.07
2039 3672 7.548780 GCACTAGAAGAGTCTTTCATCTTTGAT 59.451 37.037 6.88 0.00 35.64 2.57
2040 3673 6.870965 GCACTAGAAGAGTCTTTCATCTTTGA 59.129 38.462 6.88 0.00 35.64 2.69
2041 3674 6.183360 CGCACTAGAAGAGTCTTTCATCTTTG 60.183 42.308 6.88 2.42 35.64 2.77
2042 3675 5.866633 CGCACTAGAAGAGTCTTTCATCTTT 59.133 40.000 6.88 0.00 35.64 2.52
2043 3676 5.047660 ACGCACTAGAAGAGTCTTTCATCTT 60.048 40.000 6.88 0.00 35.64 2.40
2044 3677 4.461081 ACGCACTAGAAGAGTCTTTCATCT 59.539 41.667 6.88 1.98 35.64 2.90
2045 3678 4.739195 ACGCACTAGAAGAGTCTTTCATC 58.261 43.478 6.88 0.00 35.64 2.92
2046 3679 4.792521 ACGCACTAGAAGAGTCTTTCAT 57.207 40.909 6.88 0.00 35.64 2.57
2047 3680 4.517832 TGTACGCACTAGAAGAGTCTTTCA 59.482 41.667 6.88 0.00 35.64 2.69
2048 3681 5.044428 TGTACGCACTAGAAGAGTCTTTC 57.956 43.478 6.88 0.75 35.64 2.62
2049 3682 5.449107 TTGTACGCACTAGAAGAGTCTTT 57.551 39.130 6.88 0.15 35.64 2.52
2050 3683 5.009811 AGTTTGTACGCACTAGAAGAGTCTT 59.990 40.000 4.68 4.68 35.64 3.01
2051 3684 4.519730 AGTTTGTACGCACTAGAAGAGTCT 59.480 41.667 0.00 0.00 35.64 3.24
2052 3685 4.796369 AGTTTGTACGCACTAGAAGAGTC 58.204 43.478 0.00 0.00 35.64 3.36
2053 3686 4.850347 AGTTTGTACGCACTAGAAGAGT 57.150 40.909 0.00 0.00 39.82 3.24
2054 3687 6.355638 CAAAAGTTTGTACGCACTAGAAGAG 58.644 40.000 0.00 0.00 33.59 2.85
2055 3688 5.277154 GCAAAAGTTTGTACGCACTAGAAGA 60.277 40.000 0.00 0.00 40.24 2.87
2056 3689 4.904154 GCAAAAGTTTGTACGCACTAGAAG 59.096 41.667 0.00 0.00 40.24 2.85
2057 3690 4.333095 TGCAAAAGTTTGTACGCACTAGAA 59.667 37.500 0.00 0.00 40.24 2.10
2058 3691 3.872182 TGCAAAAGTTTGTACGCACTAGA 59.128 39.130 0.00 0.00 40.24 2.43
2059 3692 3.966218 GTGCAAAAGTTTGTACGCACTAG 59.034 43.478 18.24 0.00 42.27 2.57
2060 3693 3.942739 GTGCAAAAGTTTGTACGCACTA 58.057 40.909 18.24 0.00 42.27 2.74
2061 3694 2.792749 GTGCAAAAGTTTGTACGCACT 58.207 42.857 18.24 1.68 42.27 4.40
2067 3700 4.261572 GCCATCTCAGTGCAAAAGTTTGTA 60.262 41.667 5.71 0.00 40.24 2.41
2068 3701 3.491447 GCCATCTCAGTGCAAAAGTTTGT 60.491 43.478 5.71 0.00 40.24 2.83
2069 3702 3.054878 GCCATCTCAGTGCAAAAGTTTG 58.945 45.455 0.00 0.00 41.03 2.93
2070 3703 2.694628 TGCCATCTCAGTGCAAAAGTTT 59.305 40.909 0.00 0.00 30.85 2.66
2071 3704 2.309613 TGCCATCTCAGTGCAAAAGTT 58.690 42.857 0.00 0.00 30.85 2.66
2072 3705 1.985473 TGCCATCTCAGTGCAAAAGT 58.015 45.000 0.00 0.00 30.85 2.66
2073 3706 2.159282 GGATGCCATCTCAGTGCAAAAG 60.159 50.000 4.41 0.00 38.69 2.27
2074 3707 1.820519 GGATGCCATCTCAGTGCAAAA 59.179 47.619 4.41 0.00 38.69 2.44
2075 3708 1.466856 GGATGCCATCTCAGTGCAAA 58.533 50.000 4.41 0.00 38.69 3.68
2076 3709 0.745486 CGGATGCCATCTCAGTGCAA 60.745 55.000 4.41 0.00 38.69 4.08
2077 3710 1.153309 CGGATGCCATCTCAGTGCA 60.153 57.895 4.41 0.00 39.68 4.57
2078 3711 0.879400 CTCGGATGCCATCTCAGTGC 60.879 60.000 4.41 0.00 0.00 4.40
2079 3712 0.249784 CCTCGGATGCCATCTCAGTG 60.250 60.000 4.41 0.00 0.00 3.66
2080 3713 0.397675 TCCTCGGATGCCATCTCAGT 60.398 55.000 4.41 0.00 0.00 3.41
2081 3714 0.317799 CTCCTCGGATGCCATCTCAG 59.682 60.000 4.41 0.93 0.00 3.35
2082 3715 1.752358 GCTCCTCGGATGCCATCTCA 61.752 60.000 4.41 0.00 0.00 3.27
2083 3716 1.005156 GCTCCTCGGATGCCATCTC 60.005 63.158 4.41 0.00 0.00 2.75
2084 3717 1.459158 AGCTCCTCGGATGCCATCT 60.459 57.895 4.41 0.00 0.00 2.90
2085 3718 1.005156 GAGCTCCTCGGATGCCATC 60.005 63.158 0.87 0.00 0.00 3.51
2086 3719 3.146182 GAGCTCCTCGGATGCCAT 58.854 61.111 0.87 0.00 0.00 4.40
2095 3728 3.814005 TTTTGGTATACCGAGCTCCTC 57.186 47.619 17.13 0.00 39.43 3.71
2140 3773 5.893897 AAAAATGTCCAAAGCTGCAAAAA 57.106 30.435 1.02 0.00 0.00 1.94
2160 3793 9.965748 CAAAGAAAACGAAATGAAAGCTAAAAA 57.034 25.926 0.00 0.00 0.00 1.94
2161 3794 9.145865 ACAAAGAAAACGAAATGAAAGCTAAAA 57.854 25.926 0.00 0.00 0.00 1.52
2162 3795 8.696410 ACAAAGAAAACGAAATGAAAGCTAAA 57.304 26.923 0.00 0.00 0.00 1.85
2163 3796 9.228636 GTACAAAGAAAACGAAATGAAAGCTAA 57.771 29.630 0.00 0.00 0.00 3.09
2164 3797 7.858879 GGTACAAAGAAAACGAAATGAAAGCTA 59.141 33.333 0.00 0.00 0.00 3.32
2165 3798 6.695713 GGTACAAAGAAAACGAAATGAAAGCT 59.304 34.615 0.00 0.00 0.00 3.74
2166 3799 6.344702 CGGTACAAAGAAAACGAAATGAAAGC 60.345 38.462 0.00 0.00 0.00 3.51
2167 3800 6.908284 TCGGTACAAAGAAAACGAAATGAAAG 59.092 34.615 0.00 0.00 0.00 2.62
2168 3801 6.783162 TCGGTACAAAGAAAACGAAATGAAA 58.217 32.000 0.00 0.00 0.00 2.69
2169 3802 6.360844 TCGGTACAAAGAAAACGAAATGAA 57.639 33.333 0.00 0.00 0.00 2.57
2170 3803 5.559417 GCTCGGTACAAAGAAAACGAAATGA 60.559 40.000 0.00 0.00 0.00 2.57
2171 3804 4.611366 GCTCGGTACAAAGAAAACGAAATG 59.389 41.667 0.00 0.00 0.00 2.32
2172 3805 4.514066 AGCTCGGTACAAAGAAAACGAAAT 59.486 37.500 0.00 0.00 0.00 2.17
2173 3806 3.872771 AGCTCGGTACAAAGAAAACGAAA 59.127 39.130 0.00 0.00 0.00 3.46
2174 3807 3.460103 AGCTCGGTACAAAGAAAACGAA 58.540 40.909 0.00 0.00 0.00 3.85
2175 3808 3.054878 GAGCTCGGTACAAAGAAAACGA 58.945 45.455 0.00 0.00 0.00 3.85
2176 3809 2.157085 GGAGCTCGGTACAAAGAAAACG 59.843 50.000 7.83 0.00 0.00 3.60
2177 3810 3.400255 AGGAGCTCGGTACAAAGAAAAC 58.600 45.455 7.83 0.00 0.00 2.43
2178 3811 3.660865 GAGGAGCTCGGTACAAAGAAAA 58.339 45.455 7.83 0.00 0.00 2.29
2179 3812 3.314541 GAGGAGCTCGGTACAAAGAAA 57.685 47.619 7.83 0.00 0.00 2.52
2191 3824 4.046938 TGACATTACATTCGAGGAGCTC 57.953 45.455 4.71 4.71 0.00 4.09
2192 3825 3.739519 GCTGACATTACATTCGAGGAGCT 60.740 47.826 0.00 0.00 0.00 4.09
2193 3826 2.541762 GCTGACATTACATTCGAGGAGC 59.458 50.000 0.00 0.00 0.00 4.70
2194 3827 2.791560 CGCTGACATTACATTCGAGGAG 59.208 50.000 0.00 0.00 0.00 3.69
2195 3828 2.165641 ACGCTGACATTACATTCGAGGA 59.834 45.455 0.00 0.00 0.00 3.71
2196 3829 2.282555 CACGCTGACATTACATTCGAGG 59.717 50.000 0.00 0.00 0.00 4.63
2197 3830 3.179048 TCACGCTGACATTACATTCGAG 58.821 45.455 0.00 0.00 0.00 4.04
2198 3831 3.224884 TCACGCTGACATTACATTCGA 57.775 42.857 0.00 0.00 0.00 3.71
2199 3832 3.989705 TTCACGCTGACATTACATTCG 57.010 42.857 0.00 0.00 0.00 3.34
2200 3833 5.283060 AGTTTCACGCTGACATTACATTC 57.717 39.130 0.00 0.00 0.00 2.67
2201 3834 5.689383 AAGTTTCACGCTGACATTACATT 57.311 34.783 0.00 0.00 0.00 2.71
2202 3835 5.451908 CAAAGTTTCACGCTGACATTACAT 58.548 37.500 0.00 0.00 0.00 2.29
2203 3836 4.788201 GCAAAGTTTCACGCTGACATTACA 60.788 41.667 0.00 0.00 0.00 2.41
2204 3837 3.664025 GCAAAGTTTCACGCTGACATTAC 59.336 43.478 0.00 0.00 0.00 1.89
2205 3838 3.313803 TGCAAAGTTTCACGCTGACATTA 59.686 39.130 0.00 0.00 0.00 1.90
2206 3839 2.098934 TGCAAAGTTTCACGCTGACATT 59.901 40.909 0.00 0.00 0.00 2.71
2207 3840 1.675483 TGCAAAGTTTCACGCTGACAT 59.325 42.857 0.00 0.00 0.00 3.06
2208 3841 1.090728 TGCAAAGTTTCACGCTGACA 58.909 45.000 0.00 0.00 0.00 3.58
2209 3842 2.111756 CTTGCAAAGTTTCACGCTGAC 58.888 47.619 0.00 0.00 39.70 3.51
2210 3843 2.473530 CTTGCAAAGTTTCACGCTGA 57.526 45.000 0.00 0.00 39.70 4.26
2219 3852 8.912587 GAGATTCTTCTAGGTGCTTGCAAAGTT 61.913 40.741 0.00 0.00 38.21 2.66
2220 3853 7.515362 GAGATTCTTCTAGGTGCTTGCAAAGT 61.515 42.308 0.00 0.00 38.21 2.66
2221 3854 5.163774 GAGATTCTTCTAGGTGCTTGCAAAG 60.164 44.000 0.00 0.00 38.72 2.77
2222 3855 4.655963 AGATTCTTCTAGGTGCTTGCAAA 58.344 39.130 0.00 0.00 0.00 3.68
2223 3856 4.019860 AGAGATTCTTCTAGGTGCTTGCAA 60.020 41.667 0.00 0.00 30.30 4.08
2224 3857 3.517100 AGAGATTCTTCTAGGTGCTTGCA 59.483 43.478 0.00 0.00 30.30 4.08
2225 3858 4.119136 GAGAGATTCTTCTAGGTGCTTGC 58.881 47.826 0.00 0.00 30.30 4.01
2226 3859 5.336150 TGAGAGATTCTTCTAGGTGCTTG 57.664 43.478 0.00 0.00 30.30 4.01
2227 3860 5.898972 AGATGAGAGATTCTTCTAGGTGCTT 59.101 40.000 0.00 0.00 38.24 3.91
2228 3861 5.457686 AGATGAGAGATTCTTCTAGGTGCT 58.542 41.667 0.00 0.00 38.24 4.40
2229 3862 5.789643 AGATGAGAGATTCTTCTAGGTGC 57.210 43.478 0.00 0.00 38.24 5.01
2230 3863 7.780064 TCAAAGATGAGAGATTCTTCTAGGTG 58.220 38.462 0.00 0.00 38.87 4.00
2231 3864 7.969690 TCAAAGATGAGAGATTCTTCTAGGT 57.030 36.000 0.00 0.00 38.87 3.08
2232 3865 8.423349 ACATCAAAGATGAGAGATTCTTCTAGG 58.577 37.037 13.46 0.00 38.87 3.02
2233 3866 9.251792 CACATCAAAGATGAGAGATTCTTCTAG 57.748 37.037 13.46 0.00 38.87 2.43
2234 3867 8.756927 ACACATCAAAGATGAGAGATTCTTCTA 58.243 33.333 13.46 0.00 38.87 2.10
2235 3868 7.622713 ACACATCAAAGATGAGAGATTCTTCT 58.377 34.615 13.46 0.00 40.86 2.85
2236 3869 7.846644 ACACATCAAAGATGAGAGATTCTTC 57.153 36.000 13.46 0.00 39.39 2.87
2237 3870 9.730705 TTTACACATCAAAGATGAGAGATTCTT 57.269 29.630 13.46 0.00 39.39 2.52
2238 3871 9.730705 TTTTACACATCAAAGATGAGAGATTCT 57.269 29.630 13.46 0.00 39.39 2.40
2308 3941 0.700564 ACCATGAGATGCACCCAAGT 59.299 50.000 0.00 0.00 0.00 3.16
2309 3942 1.843368 AACCATGAGATGCACCCAAG 58.157 50.000 0.00 0.00 0.00 3.61
2310 3943 2.170166 GAAACCATGAGATGCACCCAA 58.830 47.619 0.00 0.00 0.00 4.12
2311 3944 1.616725 GGAAACCATGAGATGCACCCA 60.617 52.381 0.00 0.00 0.00 4.51
2312 3945 1.106285 GGAAACCATGAGATGCACCC 58.894 55.000 0.00 0.00 0.00 4.61
2313 3946 1.838112 TGGAAACCATGAGATGCACC 58.162 50.000 0.00 0.00 0.00 5.01
2314 3947 4.159135 AGAATTGGAAACCATGAGATGCAC 59.841 41.667 0.00 0.00 31.53 4.57
2315 3948 4.346730 AGAATTGGAAACCATGAGATGCA 58.653 39.130 0.00 0.00 31.53 3.96
2316 3949 4.996788 AGAATTGGAAACCATGAGATGC 57.003 40.909 0.00 0.00 31.53 3.91
2317 3950 6.770746 AGAAGAATTGGAAACCATGAGATG 57.229 37.500 0.00 0.00 31.53 2.90
2318 3951 7.787623 AAAGAAGAATTGGAAACCATGAGAT 57.212 32.000 0.00 0.00 31.53 2.75
2319 3952 7.601705 AAAAGAAGAATTGGAAACCATGAGA 57.398 32.000 0.00 0.00 31.53 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.