Multiple sequence alignment - TraesCS7B01G253300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G253300 chr7B 100.000 3856 0 0 1 3856 467255430 467251575 0.000000e+00 7121
1 TraesCS7B01G253300 chr7B 81.548 840 99 40 3057 3856 239368882 239369705 3.250000e-180 641
2 TraesCS7B01G253300 chr7B 89.189 185 14 5 2872 3052 700868831 700868649 3.880000e-55 226
3 TraesCS7B01G253300 chr7D 94.231 1352 51 9 1512 2863 449450250 449448926 0.000000e+00 2039
4 TraesCS7B01G253300 chr7D 93.396 424 19 2 942 1358 449450678 449450257 1.520000e-173 619
5 TraesCS7B01G253300 chr7D 84.340 447 43 11 1 443 449451349 449450926 2.770000e-111 412
6 TraesCS7B01G253300 chr7D 90.977 133 6 4 738 865 449450849 449450718 1.420000e-39 174
7 TraesCS7B01G253300 chr7A 91.898 1370 92 8 1492 2861 546642990 546644340 0.000000e+00 1897
8 TraesCS7B01G253300 chr7A 90.724 539 32 10 857 1379 546642450 546642986 0.000000e+00 702
9 TraesCS7B01G253300 chr1D 84.930 856 68 32 3057 3856 474514805 474515655 0.000000e+00 809
10 TraesCS7B01G253300 chr1D 81.499 827 95 39 3058 3856 258975753 258974957 9.090000e-176 627
11 TraesCS7B01G253300 chr1D 88.608 158 16 1 3058 3215 229180141 229179986 1.410000e-44 191
12 TraesCS7B01G253300 chr3D 83.010 824 103 29 3057 3856 157654724 157653914 0.000000e+00 712
13 TraesCS7B01G253300 chr3D 89.151 424 33 9 3413 3829 437732042 437732459 2.050000e-142 516
14 TraesCS7B01G253300 chr6A 83.973 730 81 27 3143 3856 21640699 21641408 0.000000e+00 667
15 TraesCS7B01G253300 chr6A 87.421 159 16 3 3058 3215 21653787 21653942 3.060000e-41 180
16 TraesCS7B01G253300 chr2A 79.809 837 115 41 3058 3856 757871896 757872716 9.360000e-156 560
17 TraesCS7B01G253300 chr5D 82.962 628 66 10 3261 3856 247527310 247527928 2.640000e-146 529
18 TraesCS7B01G253300 chr5D 89.444 180 15 4 2875 3052 101454871 101454694 1.390000e-54 224
19 TraesCS7B01G253300 chr2B 88.889 432 36 8 3434 3856 264592160 264592588 4.410000e-144 521
20 TraesCS7B01G253300 chr2B 81.915 188 23 10 3058 3239 615310863 615311045 8.630000e-32 148
21 TraesCS7B01G253300 chr4B 89.487 390 37 2 3471 3856 644684028 644684417 1.240000e-134 490
22 TraesCS7B01G253300 chr4B 86.486 148 15 4 3058 3204 138615024 138615167 1.430000e-34 158
23 TraesCS7B01G253300 chr2D 88.265 196 17 5 2861 3052 541547547 541547354 3.000000e-56 230
24 TraesCS7B01G253300 chr2D 82.888 187 27 4 3072 3256 337428996 337429179 3.080000e-36 163
25 TraesCS7B01G253300 chr6D 90.341 176 14 3 2875 3047 438515422 438515247 1.080000e-55 228
26 TraesCS7B01G253300 chr6B 88.601 193 15 6 2862 3049 347227137 347227327 1.080000e-55 228
27 TraesCS7B01G253300 chr1A 89.674 184 12 6 2871 3049 521902039 521902220 1.080000e-55 228
28 TraesCS7B01G253300 chr1A 86.709 158 16 3 3058 3215 124182560 124182408 1.840000e-38 171
29 TraesCS7B01G253300 chr4A 88.421 190 15 6 2867 3052 615435283 615435097 5.010000e-54 222
30 TraesCS7B01G253300 chr4A 86.747 166 16 5 3058 3222 195346308 195346148 3.060000e-41 180
31 TraesCS7B01G253300 chr3A 88.298 188 18 4 2867 3052 311404786 311404601 5.010000e-54 222
32 TraesCS7B01G253300 chr5A 87.565 193 18 5 2857 3044 508621912 508622103 6.490000e-53 219
33 TraesCS7B01G253300 chr3B 88.827 179 17 2 3080 3257 483001043 483001219 2.330000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G253300 chr7B 467251575 467255430 3855 True 7121.0 7121 100.000 1 3856 1 chr7B.!!$R1 3855
1 TraesCS7B01G253300 chr7B 239368882 239369705 823 False 641.0 641 81.548 3057 3856 1 chr7B.!!$F1 799
2 TraesCS7B01G253300 chr7D 449448926 449451349 2423 True 811.0 2039 90.736 1 2863 4 chr7D.!!$R1 2862
3 TraesCS7B01G253300 chr7A 546642450 546644340 1890 False 1299.5 1897 91.311 857 2861 2 chr7A.!!$F1 2004
4 TraesCS7B01G253300 chr1D 474514805 474515655 850 False 809.0 809 84.930 3057 3856 1 chr1D.!!$F1 799
5 TraesCS7B01G253300 chr1D 258974957 258975753 796 True 627.0 627 81.499 3058 3856 1 chr1D.!!$R2 798
6 TraesCS7B01G253300 chr3D 157653914 157654724 810 True 712.0 712 83.010 3057 3856 1 chr3D.!!$R1 799
7 TraesCS7B01G253300 chr6A 21640699 21641408 709 False 667.0 667 83.973 3143 3856 1 chr6A.!!$F1 713
8 TraesCS7B01G253300 chr2A 757871896 757872716 820 False 560.0 560 79.809 3058 3856 1 chr2A.!!$F1 798
9 TraesCS7B01G253300 chr5D 247527310 247527928 618 False 529.0 529 82.962 3261 3856 1 chr5D.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
483 494 0.235926 GCAAAGTGTGGCGAGAGTTC 59.764 55.0 0.0 0.0 0.0 3.01 F
1435 1500 0.036732 TGCTCAAATTCCAGTCGCCT 59.963 50.0 0.0 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1466 1531 0.032403 TTTGCAGCGATGCTTTTGCT 59.968 45.0 27.55 0.00 46.64 3.91 R
3042 3108 0.035439 CAACAGGCCGGTTGGAGTAT 60.035 55.0 33.44 4.58 43.39 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.395625 GCTAGGACAAGTTTTAAGGGTGT 58.604 43.478 0.00 0.00 0.00 4.16
50 51 5.068591 GGACAAGTTTTAAGGGTGTTGATGT 59.931 40.000 0.00 0.00 0.00 3.06
71 72 0.954449 CGCATCATCAGGGCATCTCC 60.954 60.000 0.00 0.00 0.00 3.71
76 77 0.249784 CATCAGGGCATCTCCGACAG 60.250 60.000 0.00 0.00 34.94 3.51
95 96 7.287927 TCCGACAGATGATACTTCCTCTATTTT 59.712 37.037 0.00 0.00 0.00 1.82
189 190 9.720769 AAAATCCTATTTCGAACTGAAGACTAA 57.279 29.630 0.00 0.00 37.99 2.24
200 201 8.085909 TCGAACTGAAGACTAATGTGAACATAA 58.914 33.333 0.00 0.00 35.10 1.90
233 234 7.297614 ACATGCCACAATTATAAGGGATAAGT 58.702 34.615 0.00 0.00 33.44 2.24
236 237 8.006298 TGCCACAATTATAAGGGATAAGTTTG 57.994 34.615 0.00 0.00 33.44 2.93
298 309 6.806388 ATGATTGTATGCATCGCTTTGATA 57.194 33.333 0.19 0.00 34.83 2.15
299 310 5.989249 TGATTGTATGCATCGCTTTGATAC 58.011 37.500 0.19 0.00 34.83 2.24
304 315 2.554142 TGCATCGCTTTGATACAGAGG 58.446 47.619 0.00 0.00 34.83 3.69
306 317 2.554142 CATCGCTTTGATACAGAGGCA 58.446 47.619 0.00 0.00 34.83 4.75
307 318 2.010145 TCGCTTTGATACAGAGGCAC 57.990 50.000 0.00 0.00 0.00 5.01
309 320 1.662629 CGCTTTGATACAGAGGCACAG 59.337 52.381 0.00 0.00 0.00 3.66
313 324 3.887621 TTGATACAGAGGCACAGGTAC 57.112 47.619 0.00 0.00 0.00 3.34
428 439 7.780271 ACATGGTAGAGAGTATGTCATGTCTAA 59.220 37.037 0.00 0.00 39.28 2.10
429 440 7.809546 TGGTAGAGAGTATGTCATGTCTAAG 57.190 40.000 0.00 0.00 0.00 2.18
430 441 7.574607 TGGTAGAGAGTATGTCATGTCTAAGA 58.425 38.462 0.00 0.00 0.00 2.10
431 442 8.221251 TGGTAGAGAGTATGTCATGTCTAAGAT 58.779 37.037 0.00 0.00 0.00 2.40
432 443 8.726988 GGTAGAGAGTATGTCATGTCTAAGATC 58.273 40.741 0.00 0.00 0.00 2.75
433 444 9.278978 GTAGAGAGTATGTCATGTCTAAGATCA 57.721 37.037 0.00 0.00 0.00 2.92
434 445 8.165239 AGAGAGTATGTCATGTCTAAGATCAC 57.835 38.462 0.00 0.00 0.00 3.06
435 446 7.777440 AGAGAGTATGTCATGTCTAAGATCACA 59.223 37.037 0.00 0.00 0.00 3.58
436 447 8.476064 AGAGTATGTCATGTCTAAGATCACAT 57.524 34.615 0.00 0.00 33.29 3.21
437 448 8.922237 AGAGTATGTCATGTCTAAGATCACATT 58.078 33.333 0.00 0.00 30.48 2.71
438 449 8.883954 AGTATGTCATGTCTAAGATCACATTG 57.116 34.615 0.00 0.00 30.48 2.82
439 450 6.615264 ATGTCATGTCTAAGATCACATTGC 57.385 37.500 0.00 0.00 30.48 3.56
440 451 5.737860 TGTCATGTCTAAGATCACATTGCT 58.262 37.500 0.00 0.00 30.48 3.91
441 452 6.877236 TGTCATGTCTAAGATCACATTGCTA 58.123 36.000 0.00 0.00 30.48 3.49
442 453 7.503549 TGTCATGTCTAAGATCACATTGCTAT 58.496 34.615 0.00 0.00 30.48 2.97
443 454 7.440255 TGTCATGTCTAAGATCACATTGCTATG 59.560 37.037 6.59 6.59 37.79 2.23
444 455 7.654923 GTCATGTCTAAGATCACATTGCTATGA 59.345 37.037 15.23 0.00 35.65 2.15
445 456 7.871463 TCATGTCTAAGATCACATTGCTATGAG 59.129 37.037 15.23 7.18 35.65 2.90
446 457 7.352079 TGTCTAAGATCACATTGCTATGAGA 57.648 36.000 15.23 12.56 36.12 3.27
447 458 7.785033 TGTCTAAGATCACATTGCTATGAGAA 58.215 34.615 15.23 0.31 35.46 2.87
448 459 7.708322 TGTCTAAGATCACATTGCTATGAGAAC 59.292 37.037 15.23 10.85 35.46 3.01
449 460 7.925483 GTCTAAGATCACATTGCTATGAGAACT 59.075 37.037 15.23 12.84 36.53 3.01
450 461 9.136323 TCTAAGATCACATTGCTATGAGAACTA 57.864 33.333 15.23 5.21 34.86 2.24
451 462 9.409312 CTAAGATCACATTGCTATGAGAACTAG 57.591 37.037 15.23 10.10 34.86 2.57
452 463 6.757237 AGATCACATTGCTATGAGAACTAGG 58.243 40.000 15.23 0.00 34.42 3.02
453 464 4.697514 TCACATTGCTATGAGAACTAGGC 58.302 43.478 15.23 0.00 35.65 3.93
454 465 4.406972 TCACATTGCTATGAGAACTAGGCT 59.593 41.667 15.23 0.00 35.65 4.58
455 466 5.598417 TCACATTGCTATGAGAACTAGGCTA 59.402 40.000 15.23 0.00 35.65 3.93
456 467 5.925397 CACATTGCTATGAGAACTAGGCTAG 59.075 44.000 19.83 19.83 35.65 3.42
457 468 4.592485 TTGCTATGAGAACTAGGCTAGC 57.408 45.455 21.26 6.04 33.80 3.42
458 469 2.894126 TGCTATGAGAACTAGGCTAGCC 59.106 50.000 27.19 27.19 32.55 3.93
459 470 8.198474 CATTGCTATGAGAACTAGGCTAGCCT 62.198 46.154 37.35 37.35 40.92 4.58
460 471 4.202577 TGCTATGAGAACTAGGCTAGCCTA 60.203 45.833 35.69 35.69 46.14 3.93
480 491 3.257933 GGCAAAGTGTGGCGAGAG 58.742 61.111 0.00 0.00 43.81 3.20
481 492 1.598130 GGCAAAGTGTGGCGAGAGT 60.598 57.895 0.00 0.00 43.81 3.24
482 493 1.166531 GGCAAAGTGTGGCGAGAGTT 61.167 55.000 0.00 0.00 43.81 3.01
483 494 0.235926 GCAAAGTGTGGCGAGAGTTC 59.764 55.000 0.00 0.00 0.00 3.01
484 495 1.581934 CAAAGTGTGGCGAGAGTTCA 58.418 50.000 0.00 0.00 0.00 3.18
485 496 1.939934 CAAAGTGTGGCGAGAGTTCAA 59.060 47.619 0.00 0.00 0.00 2.69
486 497 2.325583 AAGTGTGGCGAGAGTTCAAA 57.674 45.000 0.00 0.00 0.00 2.69
487 498 2.550830 AGTGTGGCGAGAGTTCAAAT 57.449 45.000 0.00 0.00 0.00 2.32
488 499 2.417719 AGTGTGGCGAGAGTTCAAATC 58.582 47.619 0.00 0.00 0.00 2.17
489 500 2.037772 AGTGTGGCGAGAGTTCAAATCT 59.962 45.455 0.00 0.00 0.00 2.40
490 501 2.413453 GTGTGGCGAGAGTTCAAATCTC 59.587 50.000 4.70 4.70 39.89 2.75
496 507 2.531206 GAGAGTTCAAATCTCGTCGGG 58.469 52.381 0.00 0.00 34.32 5.14
497 508 2.163815 GAGAGTTCAAATCTCGTCGGGA 59.836 50.000 0.00 0.00 34.32 5.14
498 509 2.164624 AGAGTTCAAATCTCGTCGGGAG 59.835 50.000 0.00 0.00 44.58 4.30
499 510 1.893801 AGTTCAAATCTCGTCGGGAGT 59.106 47.619 0.00 0.00 43.60 3.85
500 511 1.993370 GTTCAAATCTCGTCGGGAGTG 59.007 52.381 0.00 1.42 43.60 3.51
501 512 1.541379 TCAAATCTCGTCGGGAGTGA 58.459 50.000 0.00 4.04 43.60 3.41
502 513 1.890489 TCAAATCTCGTCGGGAGTGAA 59.110 47.619 8.45 0.00 43.60 3.18
503 514 2.496070 TCAAATCTCGTCGGGAGTGAAT 59.504 45.455 8.45 0.00 43.60 2.57
504 515 3.056107 TCAAATCTCGTCGGGAGTGAATT 60.056 43.478 8.45 0.00 43.60 2.17
505 516 3.611766 AATCTCGTCGGGAGTGAATTT 57.388 42.857 0.00 0.00 43.60 1.82
506 517 3.611766 ATCTCGTCGGGAGTGAATTTT 57.388 42.857 0.00 0.00 43.60 1.82
507 518 3.396260 TCTCGTCGGGAGTGAATTTTT 57.604 42.857 0.00 0.00 43.60 1.94
508 519 3.064207 TCTCGTCGGGAGTGAATTTTTG 58.936 45.455 0.00 0.00 43.60 2.44
509 520 3.064207 CTCGTCGGGAGTGAATTTTTGA 58.936 45.455 0.00 0.00 38.02 2.69
510 521 3.670625 TCGTCGGGAGTGAATTTTTGAT 58.329 40.909 0.00 0.00 0.00 2.57
511 522 4.069304 TCGTCGGGAGTGAATTTTTGATT 58.931 39.130 0.00 0.00 0.00 2.57
512 523 4.153475 TCGTCGGGAGTGAATTTTTGATTC 59.847 41.667 0.00 0.00 0.00 2.52
513 524 4.671766 CGTCGGGAGTGAATTTTTGATTCC 60.672 45.833 0.00 0.00 0.00 3.01
514 525 4.459337 GTCGGGAGTGAATTTTTGATTCCT 59.541 41.667 0.00 0.00 0.00 3.36
515 526 4.700213 TCGGGAGTGAATTTTTGATTCCTC 59.300 41.667 0.00 0.00 0.00 3.71
516 527 4.458989 CGGGAGTGAATTTTTGATTCCTCA 59.541 41.667 13.86 0.00 32.23 3.86
517 528 5.619981 CGGGAGTGAATTTTTGATTCCTCAC 60.620 44.000 13.86 11.19 34.69 3.51
518 529 5.336770 GGGAGTGAATTTTTGATTCCTCACC 60.337 44.000 13.86 10.65 34.97 4.02
519 530 5.376854 AGTGAATTTTTGATTCCTCACCG 57.623 39.130 0.00 0.00 34.97 4.94
520 531 4.218417 AGTGAATTTTTGATTCCTCACCGG 59.782 41.667 0.00 0.00 34.97 5.28
521 532 4.217550 GTGAATTTTTGATTCCTCACCGGA 59.782 41.667 9.46 0.00 41.06 5.14
522 533 5.016173 TGAATTTTTGATTCCTCACCGGAT 58.984 37.500 9.46 0.00 42.70 4.18
523 534 4.989279 ATTTTTGATTCCTCACCGGATG 57.011 40.909 9.46 2.48 42.70 3.51
524 535 2.418368 TTTGATTCCTCACCGGATGG 57.582 50.000 9.46 7.18 42.70 3.51
525 536 0.546122 TTGATTCCTCACCGGATGGG 59.454 55.000 9.46 6.74 42.70 4.00
526 537 1.227973 GATTCCTCACCGGATGGGC 60.228 63.158 9.46 0.00 42.70 5.36
527 538 1.694169 ATTCCTCACCGGATGGGCT 60.694 57.895 9.46 0.00 42.70 5.19
528 539 1.281925 ATTCCTCACCGGATGGGCTT 61.282 55.000 9.46 0.00 42.70 4.35
529 540 2.124570 CCTCACCGGATGGGCTTG 60.125 66.667 9.46 0.00 40.62 4.01
530 541 2.671070 CTCACCGGATGGGCTTGT 59.329 61.111 9.46 0.00 40.62 3.16
531 542 1.002134 CTCACCGGATGGGCTTGTT 60.002 57.895 9.46 0.00 40.62 2.83
532 543 1.002624 TCACCGGATGGGCTTGTTC 60.003 57.895 9.46 0.00 40.62 3.18
533 544 1.002134 CACCGGATGGGCTTGTTCT 60.002 57.895 9.46 0.00 40.62 3.01
534 545 0.251916 CACCGGATGGGCTTGTTCTA 59.748 55.000 9.46 0.00 40.62 2.10
535 546 1.134098 CACCGGATGGGCTTGTTCTAT 60.134 52.381 9.46 0.00 40.62 1.98
536 547 2.104111 CACCGGATGGGCTTGTTCTATA 59.896 50.000 9.46 0.00 40.62 1.31
537 548 2.775384 ACCGGATGGGCTTGTTCTATAA 59.225 45.455 9.46 0.00 40.62 0.98
538 549 3.201266 ACCGGATGGGCTTGTTCTATAAA 59.799 43.478 9.46 0.00 40.62 1.40
539 550 4.204012 CCGGATGGGCTTGTTCTATAAAA 58.796 43.478 0.00 0.00 0.00 1.52
540 551 4.642885 CCGGATGGGCTTGTTCTATAAAAA 59.357 41.667 0.00 0.00 0.00 1.94
541 552 5.301805 CCGGATGGGCTTGTTCTATAAAAAT 59.698 40.000 0.00 0.00 0.00 1.82
542 553 6.488683 CCGGATGGGCTTGTTCTATAAAAATA 59.511 38.462 0.00 0.00 0.00 1.40
543 554 7.176690 CCGGATGGGCTTGTTCTATAAAAATAT 59.823 37.037 0.00 0.00 0.00 1.28
544 555 8.023128 CGGATGGGCTTGTTCTATAAAAATATG 58.977 37.037 0.00 0.00 0.00 1.78
545 556 8.860088 GGATGGGCTTGTTCTATAAAAATATGT 58.140 33.333 0.00 0.00 0.00 2.29
546 557 9.899226 GATGGGCTTGTTCTATAAAAATATGTC 57.101 33.333 0.00 0.00 0.00 3.06
547 558 9.646522 ATGGGCTTGTTCTATAAAAATATGTCT 57.353 29.630 0.00 0.00 0.00 3.41
548 559 9.474313 TGGGCTTGTTCTATAAAAATATGTCTT 57.526 29.630 0.00 0.00 0.00 3.01
566 577 7.741027 ATGTCTTAGATGCTAATGTTCATGG 57.259 36.000 0.00 0.00 0.00 3.66
567 578 6.888105 TGTCTTAGATGCTAATGTTCATGGA 58.112 36.000 0.00 0.00 0.00 3.41
568 579 7.512130 TGTCTTAGATGCTAATGTTCATGGAT 58.488 34.615 0.00 0.00 0.00 3.41
569 580 7.658982 TGTCTTAGATGCTAATGTTCATGGATC 59.341 37.037 0.00 0.00 0.00 3.36
570 581 7.877097 GTCTTAGATGCTAATGTTCATGGATCT 59.123 37.037 10.24 10.24 39.99 2.75
571 582 8.093307 TCTTAGATGCTAATGTTCATGGATCTC 58.907 37.037 9.21 0.00 38.30 2.75
572 583 6.183810 AGATGCTAATGTTCATGGATCTCA 57.816 37.500 0.00 0.00 33.44 3.27
573 584 6.780901 AGATGCTAATGTTCATGGATCTCAT 58.219 36.000 0.00 0.00 33.44 2.90
574 585 7.232188 AGATGCTAATGTTCATGGATCTCATT 58.768 34.615 0.00 0.00 33.44 2.57
575 586 7.724506 AGATGCTAATGTTCATGGATCTCATTT 59.275 33.333 0.00 0.00 33.44 2.32
576 587 7.649533 TGCTAATGTTCATGGATCTCATTTT 57.350 32.000 0.00 0.00 32.92 1.82
577 588 8.070034 TGCTAATGTTCATGGATCTCATTTTT 57.930 30.769 0.00 0.00 32.92 1.94
601 612 4.746535 TTAGATCACACGGCTATTTGGA 57.253 40.909 0.00 0.00 0.00 3.53
611 624 5.163301 ACACGGCTATTTGGATATCAAGACT 60.163 40.000 4.83 0.00 36.62 3.24
630 643 9.739276 TCAAGACTTCTTATCCAACAATTACAT 57.261 29.630 0.00 0.00 34.28 2.29
653 666 9.292846 ACATCGATTTTGATTATGTGTTCATTG 57.707 29.630 0.00 0.00 35.70 2.82
654 667 9.292846 CATCGATTTTGATTATGTGTTCATTGT 57.707 29.630 0.00 0.00 35.70 2.71
655 668 8.672214 TCGATTTTGATTATGTGTTCATTGTG 57.328 30.769 0.00 0.00 35.70 3.33
656 669 8.510505 TCGATTTTGATTATGTGTTCATTGTGA 58.489 29.630 0.00 0.00 35.70 3.58
657 670 9.127006 CGATTTTGATTATGTGTTCATTGTGAA 57.873 29.630 0.00 0.00 35.70 3.18
660 673 7.872163 TTGATTATGTGTTCATTGTGAAAGC 57.128 32.000 0.00 0.00 38.22 3.51
661 674 6.979465 TGATTATGTGTTCATTGTGAAAGCA 58.021 32.000 0.00 0.00 38.22 3.91
662 675 7.604549 TGATTATGTGTTCATTGTGAAAGCAT 58.395 30.769 11.92 11.92 38.22 3.79
665 678 8.914328 TTATGTGTTCATTGTGAAAGCATATG 57.086 30.769 0.00 0.00 38.22 1.78
666 679 6.330004 TGTGTTCATTGTGAAAGCATATGT 57.670 33.333 4.29 0.00 38.22 2.29
667 680 6.747125 TGTGTTCATTGTGAAAGCATATGTT 58.253 32.000 4.29 0.00 38.22 2.71
670 683 8.550376 GTGTTCATTGTGAAAGCATATGTTTTT 58.450 29.630 17.27 11.82 38.22 1.94
694 707 7.845617 TTTTACGTGAAGTGAAAACATATGC 57.154 32.000 1.58 0.00 35.73 3.14
695 708 6.795098 TTACGTGAAGTGAAAACATATGCT 57.205 33.333 1.58 0.00 0.00 3.79
696 709 5.689383 ACGTGAAGTGAAAACATATGCTT 57.311 34.783 1.58 0.00 0.00 3.91
697 710 5.451908 ACGTGAAGTGAAAACATATGCTTG 58.548 37.500 1.58 0.00 0.00 4.01
698 711 4.321745 CGTGAAGTGAAAACATATGCTTGC 59.678 41.667 1.58 0.00 0.00 4.01
699 712 5.464168 GTGAAGTGAAAACATATGCTTGCT 58.536 37.500 1.58 0.00 0.00 3.91
700 713 6.611381 GTGAAGTGAAAACATATGCTTGCTA 58.389 36.000 1.58 0.00 0.00 3.49
701 714 6.744537 GTGAAGTGAAAACATATGCTTGCTAG 59.255 38.462 1.58 0.00 0.00 3.42
710 723 4.972875 GCTTGCTAGCTGGTGGAT 57.027 55.556 17.23 0.00 44.27 3.41
711 724 3.181526 GCTTGCTAGCTGGTGGATT 57.818 52.632 17.23 0.00 44.27 3.01
712 725 0.737219 GCTTGCTAGCTGGTGGATTG 59.263 55.000 17.23 0.00 44.27 2.67
713 726 1.952367 GCTTGCTAGCTGGTGGATTGT 60.952 52.381 17.23 0.00 44.27 2.71
714 727 1.741706 CTTGCTAGCTGGTGGATTGTG 59.258 52.381 17.23 0.00 0.00 3.33
715 728 0.983467 TGCTAGCTGGTGGATTGTGA 59.017 50.000 17.23 0.00 0.00 3.58
716 729 1.561076 TGCTAGCTGGTGGATTGTGAT 59.439 47.619 17.23 0.00 0.00 3.06
717 730 2.771372 TGCTAGCTGGTGGATTGTGATA 59.229 45.455 17.23 0.00 0.00 2.15
718 731 3.392285 TGCTAGCTGGTGGATTGTGATAT 59.608 43.478 17.23 0.00 0.00 1.63
719 732 3.750130 GCTAGCTGGTGGATTGTGATATG 59.250 47.826 7.70 0.00 0.00 1.78
720 733 2.579873 AGCTGGTGGATTGTGATATGC 58.420 47.619 0.00 0.00 0.00 3.14
721 734 2.174210 AGCTGGTGGATTGTGATATGCT 59.826 45.455 0.00 0.00 0.00 3.79
722 735 2.292569 GCTGGTGGATTGTGATATGCTG 59.707 50.000 0.00 0.00 0.00 4.41
723 736 3.812262 CTGGTGGATTGTGATATGCTGA 58.188 45.455 0.00 0.00 0.00 4.26
724 737 4.395625 CTGGTGGATTGTGATATGCTGAT 58.604 43.478 0.00 0.00 0.00 2.90
725 738 4.139038 TGGTGGATTGTGATATGCTGATG 58.861 43.478 0.00 0.00 0.00 3.07
726 739 3.504906 GGTGGATTGTGATATGCTGATGG 59.495 47.826 0.00 0.00 0.00 3.51
727 740 4.139786 GTGGATTGTGATATGCTGATGGT 58.860 43.478 0.00 0.00 0.00 3.55
728 741 5.308014 GTGGATTGTGATATGCTGATGGTA 58.692 41.667 0.00 0.00 0.00 3.25
729 742 5.942236 GTGGATTGTGATATGCTGATGGTAT 59.058 40.000 0.00 0.00 0.00 2.73
730 743 5.941647 TGGATTGTGATATGCTGATGGTATG 59.058 40.000 0.00 0.00 0.00 2.39
731 744 6.175471 GGATTGTGATATGCTGATGGTATGA 58.825 40.000 0.00 0.00 0.00 2.15
732 745 6.827251 GGATTGTGATATGCTGATGGTATGAT 59.173 38.462 0.00 0.00 0.00 2.45
733 746 7.989170 GGATTGTGATATGCTGATGGTATGATA 59.011 37.037 0.00 0.00 0.00 2.15
734 747 9.557061 GATTGTGATATGCTGATGGTATGATAT 57.443 33.333 0.00 0.00 0.00 1.63
735 748 8.726870 TTGTGATATGCTGATGGTATGATATG 57.273 34.615 0.00 0.00 0.00 1.78
736 749 8.081517 TGTGATATGCTGATGGTATGATATGA 57.918 34.615 0.00 0.00 0.00 2.15
747 760 6.069705 TGGTATGATATGATGGACATGCAT 57.930 37.500 0.00 0.00 39.77 3.96
795 808 8.544622 TCATATACATGAAAACTAGGTGGTTGA 58.455 33.333 0.00 0.00 38.25 3.18
803 816 7.514721 TGAAAACTAGGTGGTTGATTCTAACT 58.485 34.615 0.00 0.00 0.00 2.24
875 918 1.453155 AAGCGATCGTTCAAGCCATT 58.547 45.000 17.81 0.00 0.00 3.16
880 923 1.470098 GATCGTTCAAGCCATTGCAGT 59.530 47.619 0.00 0.00 41.13 4.40
895 938 4.008933 AGTGCACTCGCCCACTCC 62.009 66.667 15.25 0.00 37.77 3.85
910 953 1.484240 CACTCCCCCTCATCTTGTCTC 59.516 57.143 0.00 0.00 0.00 3.36
921 964 3.323115 TCATCTTGTCTCACTTGAGCACT 59.677 43.478 0.99 0.00 41.80 4.40
923 966 2.695147 TCTTGTCTCACTTGAGCACTGA 59.305 45.455 0.99 2.71 41.80 3.41
928 971 0.755079 TCACTTGAGCACTGACAGCT 59.245 50.000 1.25 0.00 46.82 4.24
935 978 3.029570 TGAGCACTGACAGCTATCATCT 58.970 45.455 0.00 0.00 43.58 2.90
939 982 1.415659 ACTGACAGCTATCATCTGCCC 59.584 52.381 0.00 0.00 35.04 5.36
949 992 3.959495 ATCATCTGCCCCACATTAAGT 57.041 42.857 0.00 0.00 0.00 2.24
954 997 2.504175 TCTGCCCCACATTAAGTACTCC 59.496 50.000 0.00 0.00 0.00 3.85
955 998 2.238646 CTGCCCCACATTAAGTACTCCA 59.761 50.000 0.00 0.00 0.00 3.86
958 1001 3.606687 CCCCACATTAAGTACTCCACAC 58.393 50.000 0.00 0.00 0.00 3.82
1026 1083 0.935366 CTCTTCCGCCGCTCGTATTC 60.935 60.000 0.00 0.00 36.19 1.75
1086 1143 1.522092 CGGTAGCAAGGGAGCATCA 59.478 57.895 0.00 0.00 36.25 3.07
1092 1149 0.242017 GCAAGGGAGCATCAACACAC 59.758 55.000 0.00 0.00 36.25 3.82
1095 1152 2.690778 GGGAGCATCAACACACGGC 61.691 63.158 0.00 0.00 36.25 5.68
1210 1267 2.602568 AGAAGTACGGGCCGGTGT 60.603 61.111 31.78 12.31 0.00 4.16
1292 1349 2.629656 TTCTCCGGACGAACGACCC 61.630 63.158 0.00 5.51 35.47 4.46
1335 1392 1.070134 TCACCAGGCAAGTGTGTAGTC 59.930 52.381 6.78 0.00 36.58 2.59
1337 1394 0.396435 CCAGGCAAGTGTGTAGTCCA 59.604 55.000 0.00 0.00 0.00 4.02
1349 1414 6.827727 AGTGTGTAGTCCAAATCTGTACTTT 58.172 36.000 0.00 0.00 0.00 2.66
1362 1427 9.424319 CAAATCTGTACTTTTCTAGCTCTACAA 57.576 33.333 0.00 0.00 0.00 2.41
1373 1438 3.113260 AGCTCTACAACCACTCACAAC 57.887 47.619 0.00 0.00 0.00 3.32
1379 1444 1.202533 ACAACCACTCACAACTCCTCG 60.203 52.381 0.00 0.00 0.00 4.63
1380 1445 0.393077 AACCACTCACAACTCCTCGG 59.607 55.000 0.00 0.00 0.00 4.63
1381 1446 0.469331 ACCACTCACAACTCCTCGGA 60.469 55.000 0.00 0.00 0.00 4.55
1382 1447 0.038159 CCACTCACAACTCCTCGGAC 60.038 60.000 0.00 0.00 0.00 4.79
1383 1448 0.038159 CACTCACAACTCCTCGGACC 60.038 60.000 0.00 0.00 0.00 4.46
1384 1449 0.178958 ACTCACAACTCCTCGGACCT 60.179 55.000 0.00 0.00 0.00 3.85
1385 1450 1.075050 ACTCACAACTCCTCGGACCTA 59.925 52.381 0.00 0.00 0.00 3.08
1386 1451 2.291670 ACTCACAACTCCTCGGACCTAT 60.292 50.000 0.00 0.00 0.00 2.57
1387 1452 2.761208 CTCACAACTCCTCGGACCTATT 59.239 50.000 0.00 0.00 0.00 1.73
1388 1453 3.170717 TCACAACTCCTCGGACCTATTT 58.829 45.455 0.00 0.00 0.00 1.40
1389 1454 4.346730 TCACAACTCCTCGGACCTATTTA 58.653 43.478 0.00 0.00 0.00 1.40
1390 1455 4.401519 TCACAACTCCTCGGACCTATTTAG 59.598 45.833 0.00 0.00 0.00 1.85
1391 1456 4.401519 CACAACTCCTCGGACCTATTTAGA 59.598 45.833 0.00 0.00 0.00 2.10
1392 1457 5.021458 ACAACTCCTCGGACCTATTTAGAA 58.979 41.667 0.00 0.00 0.00 2.10
1393 1458 5.661759 ACAACTCCTCGGACCTATTTAGAAT 59.338 40.000 0.00 0.00 0.00 2.40
1394 1459 6.183360 ACAACTCCTCGGACCTATTTAGAATC 60.183 42.308 0.00 0.00 0.00 2.52
1395 1460 5.707495 ACTCCTCGGACCTATTTAGAATCT 58.293 41.667 0.00 0.00 0.00 2.40
1396 1461 6.137559 ACTCCTCGGACCTATTTAGAATCTT 58.862 40.000 0.00 0.00 0.00 2.40
1397 1462 6.265876 ACTCCTCGGACCTATTTAGAATCTTC 59.734 42.308 0.00 0.00 0.00 2.87
1398 1463 6.374588 TCCTCGGACCTATTTAGAATCTTCT 58.625 40.000 0.00 0.00 41.24 2.85
1399 1464 6.839657 TCCTCGGACCTATTTAGAATCTTCTT 59.160 38.462 0.00 0.00 38.70 2.52
1400 1465 7.344871 TCCTCGGACCTATTTAGAATCTTCTTT 59.655 37.037 0.00 0.00 38.70 2.52
1401 1466 8.639761 CCTCGGACCTATTTAGAATCTTCTTTA 58.360 37.037 0.00 0.00 38.70 1.85
1403 1468 9.813446 TCGGACCTATTTAGAATCTTCTTTAAC 57.187 33.333 0.00 0.00 38.70 2.01
1404 1469 9.819267 CGGACCTATTTAGAATCTTCTTTAACT 57.181 33.333 0.00 0.00 38.70 2.24
1432 1497 5.908106 CAAAATTTGCTCAAATTCCAGTCG 58.092 37.500 17.69 3.75 46.76 4.18
1433 1498 2.704725 TTTGCTCAAATTCCAGTCGC 57.295 45.000 0.00 0.00 0.00 5.19
1434 1499 0.881118 TTGCTCAAATTCCAGTCGCC 59.119 50.000 0.00 0.00 0.00 5.54
1435 1500 0.036732 TGCTCAAATTCCAGTCGCCT 59.963 50.000 0.00 0.00 0.00 5.52
1436 1501 0.449388 GCTCAAATTCCAGTCGCCTG 59.551 55.000 0.00 0.00 38.50 4.85
1437 1502 1.945819 GCTCAAATTCCAGTCGCCTGA 60.946 52.381 0.00 0.00 41.50 3.86
1438 1503 2.426522 CTCAAATTCCAGTCGCCTGAA 58.573 47.619 0.00 0.00 41.50 3.02
1439 1504 2.813754 CTCAAATTCCAGTCGCCTGAAA 59.186 45.455 0.00 0.00 41.50 2.69
1440 1505 3.420893 TCAAATTCCAGTCGCCTGAAAT 58.579 40.909 0.00 0.00 41.50 2.17
1441 1506 4.584874 TCAAATTCCAGTCGCCTGAAATA 58.415 39.130 0.00 0.00 41.50 1.40
1442 1507 4.635765 TCAAATTCCAGTCGCCTGAAATAG 59.364 41.667 0.00 0.00 41.50 1.73
1443 1508 2.024176 TTCCAGTCGCCTGAAATAGC 57.976 50.000 0.00 0.00 41.50 2.97
1444 1509 0.901827 TCCAGTCGCCTGAAATAGCA 59.098 50.000 0.00 0.00 41.50 3.49
1445 1510 1.486310 TCCAGTCGCCTGAAATAGCAT 59.514 47.619 0.00 0.00 41.50 3.79
1446 1511 2.092968 TCCAGTCGCCTGAAATAGCATT 60.093 45.455 0.00 0.00 41.50 3.56
1447 1512 3.133901 TCCAGTCGCCTGAAATAGCATTA 59.866 43.478 0.00 0.00 41.50 1.90
1448 1513 4.067896 CCAGTCGCCTGAAATAGCATTAT 58.932 43.478 0.00 0.00 41.50 1.28
1449 1514 4.516698 CCAGTCGCCTGAAATAGCATTATT 59.483 41.667 0.00 0.00 41.50 1.40
1450 1515 5.446709 CAGTCGCCTGAAATAGCATTATTG 58.553 41.667 0.00 0.00 41.50 1.90
1451 1516 4.516698 AGTCGCCTGAAATAGCATTATTGG 59.483 41.667 0.00 0.00 30.00 3.16
1452 1517 4.515191 GTCGCCTGAAATAGCATTATTGGA 59.485 41.667 0.00 0.00 30.00 3.53
1453 1518 4.756642 TCGCCTGAAATAGCATTATTGGAG 59.243 41.667 0.00 0.00 30.00 3.86
1454 1519 4.083110 CGCCTGAAATAGCATTATTGGAGG 60.083 45.833 0.00 0.00 34.48 4.30
1455 1520 4.321527 GCCTGAAATAGCATTATTGGAGGC 60.322 45.833 10.26 10.26 41.96 4.70
1456 1521 4.083110 CCTGAAATAGCATTATTGGAGGCG 60.083 45.833 0.00 0.00 30.00 5.52
1457 1522 4.460263 TGAAATAGCATTATTGGAGGCGT 58.540 39.130 0.00 0.00 30.00 5.68
1458 1523 5.616270 TGAAATAGCATTATTGGAGGCGTA 58.384 37.500 0.00 0.00 30.00 4.42
1459 1524 5.468746 TGAAATAGCATTATTGGAGGCGTAC 59.531 40.000 0.00 0.00 30.00 3.67
1460 1525 4.617253 ATAGCATTATTGGAGGCGTACA 57.383 40.909 0.00 0.00 0.00 2.90
1461 1526 3.275617 AGCATTATTGGAGGCGTACAA 57.724 42.857 6.50 6.50 0.00 2.41
1462 1527 3.616219 AGCATTATTGGAGGCGTACAAA 58.384 40.909 8.36 0.00 0.00 2.83
1463 1528 4.207165 AGCATTATTGGAGGCGTACAAAT 58.793 39.130 8.36 0.00 0.00 2.32
1464 1529 4.644685 AGCATTATTGGAGGCGTACAAATT 59.355 37.500 8.36 0.00 0.00 1.82
1465 1530 5.127031 AGCATTATTGGAGGCGTACAAATTT 59.873 36.000 8.36 0.00 0.00 1.82
1466 1531 6.320164 AGCATTATTGGAGGCGTACAAATTTA 59.680 34.615 8.36 0.00 0.00 1.40
1467 1532 6.636850 GCATTATTGGAGGCGTACAAATTTAG 59.363 38.462 8.36 0.00 0.00 1.85
1468 1533 4.632538 ATTGGAGGCGTACAAATTTAGC 57.367 40.909 8.36 0.00 0.00 3.09
1469 1534 3.060736 TGGAGGCGTACAAATTTAGCA 57.939 42.857 0.00 0.00 0.00 3.49
1470 1535 3.413327 TGGAGGCGTACAAATTTAGCAA 58.587 40.909 0.00 0.00 0.00 3.91
1471 1536 3.821600 TGGAGGCGTACAAATTTAGCAAA 59.178 39.130 0.00 0.00 0.00 3.68
1472 1537 4.278669 TGGAGGCGTACAAATTTAGCAAAA 59.721 37.500 0.00 0.00 0.00 2.44
1473 1538 4.857037 GGAGGCGTACAAATTTAGCAAAAG 59.143 41.667 0.00 0.00 0.00 2.27
1474 1539 4.234574 AGGCGTACAAATTTAGCAAAAGC 58.765 39.130 0.00 0.00 0.00 3.51
1475 1540 3.984633 GGCGTACAAATTTAGCAAAAGCA 59.015 39.130 0.00 0.00 0.00 3.91
1476 1541 4.625311 GGCGTACAAATTTAGCAAAAGCAT 59.375 37.500 0.00 0.00 0.00 3.79
1477 1542 5.220209 GGCGTACAAATTTAGCAAAAGCATC 60.220 40.000 0.00 0.00 0.00 3.91
1478 1543 5.496969 GCGTACAAATTTAGCAAAAGCATCG 60.497 40.000 0.00 0.00 0.00 3.84
1479 1544 4.908966 ACAAATTTAGCAAAAGCATCGC 57.091 36.364 0.00 0.00 0.00 4.58
1480 1545 4.559153 ACAAATTTAGCAAAAGCATCGCT 58.441 34.783 0.00 0.00 42.56 4.93
1481 1546 4.386652 ACAAATTTAGCAAAAGCATCGCTG 59.613 37.500 0.00 0.00 39.62 5.18
1535 1601 5.327616 TCGGAATATGAACGTACTTGGAA 57.672 39.130 0.00 0.00 0.00 3.53
1536 1602 5.909477 TCGGAATATGAACGTACTTGGAAT 58.091 37.500 0.00 0.00 0.00 3.01
1537 1603 5.981315 TCGGAATATGAACGTACTTGGAATC 59.019 40.000 0.00 0.00 0.00 2.52
1538 1604 5.107989 CGGAATATGAACGTACTTGGAATCG 60.108 44.000 0.00 0.00 0.00 3.34
1545 1611 3.259064 ACGTACTTGGAATCGGATGTTG 58.741 45.455 0.00 0.00 0.00 3.33
2095 2161 2.158842 GGTGAAGATGTGGAGGGATCAG 60.159 54.545 0.00 0.00 0.00 2.90
2157 2223 3.104512 TCCTGATGGTATGGTTCGTTCT 58.895 45.455 0.00 0.00 34.23 3.01
2166 2232 7.643569 TGGTATGGTTCGTTCTACTACAATA 57.356 36.000 0.00 0.00 0.00 1.90
2167 2233 7.709947 TGGTATGGTTCGTTCTACTACAATAG 58.290 38.462 0.00 0.00 0.00 1.73
2168 2234 7.340232 TGGTATGGTTCGTTCTACTACAATAGT 59.660 37.037 0.00 0.00 42.68 2.12
2169 2235 7.646922 GGTATGGTTCGTTCTACTACAATAGTG 59.353 40.741 0.00 0.00 39.81 2.74
2196 2262 8.935844 CACAATCTACATTCAGTTACTGCTAAA 58.064 33.333 7.61 0.00 0.00 1.85
2207 2273 9.461312 TTCAGTTACTGCTAAATATTGGACAAT 57.539 29.630 7.61 2.80 34.93 2.71
2301 2367 3.954258 TGTCACTACGATCTGGATCATGT 59.046 43.478 10.62 4.46 37.69 3.21
2303 2369 4.036852 GTCACTACGATCTGGATCATGTCA 59.963 45.833 10.62 0.00 37.69 3.58
2486 2552 3.507233 TGATTCCAAGAGAAACCATGCAC 59.493 43.478 0.00 0.00 38.21 4.57
2714 2780 2.390599 CGTGGCGAATGTGGAGGTG 61.391 63.158 0.00 0.00 0.00 4.00
2723 2789 3.958860 GTGGAGGTGGTGCTGGCT 61.959 66.667 0.00 0.00 0.00 4.75
2783 2849 0.809385 TGAAGGAGGACGACATCGAC 59.191 55.000 8.54 1.28 43.02 4.20
2850 2916 1.923227 GCTTGTCCCTGTTAAGCGGC 61.923 60.000 0.00 0.00 37.64 6.53
2852 2918 0.887387 TTGTCCCTGTTAAGCGGCAC 60.887 55.000 1.45 0.00 0.00 5.01
2857 2923 0.729116 CCTGTTAAGCGGCACTGATG 59.271 55.000 1.45 0.00 0.00 3.07
2863 2929 0.322975 AAGCGGCACTGATGTCTCTT 59.677 50.000 1.45 0.00 0.00 2.85
2864 2930 0.108424 AGCGGCACTGATGTCTCTTC 60.108 55.000 1.45 0.00 0.00 2.87
2865 2931 0.390340 GCGGCACTGATGTCTCTTCA 60.390 55.000 0.00 0.00 0.00 3.02
2866 2932 1.741732 GCGGCACTGATGTCTCTTCAT 60.742 52.381 0.00 0.00 0.00 2.57
2867 2933 2.625737 CGGCACTGATGTCTCTTCATT 58.374 47.619 0.00 0.00 0.00 2.57
2868 2934 3.005554 CGGCACTGATGTCTCTTCATTT 58.994 45.455 0.00 0.00 0.00 2.32
2869 2935 4.183865 CGGCACTGATGTCTCTTCATTTA 58.816 43.478 0.00 0.00 0.00 1.40
2870 2936 4.813161 CGGCACTGATGTCTCTTCATTTAT 59.187 41.667 0.00 0.00 0.00 1.40
2871 2937 5.985530 CGGCACTGATGTCTCTTCATTTATA 59.014 40.000 0.00 0.00 0.00 0.98
2872 2938 6.648310 CGGCACTGATGTCTCTTCATTTATAT 59.352 38.462 0.00 0.00 0.00 0.86
2873 2939 7.148672 CGGCACTGATGTCTCTTCATTTATATC 60.149 40.741 0.00 0.00 0.00 1.63
2874 2940 7.877097 GGCACTGATGTCTCTTCATTTATATCT 59.123 37.037 0.00 0.00 0.00 1.98
2875 2941 9.920133 GCACTGATGTCTCTTCATTTATATCTA 57.080 33.333 0.00 0.00 0.00 1.98
2915 2981 3.621419 CCAAAGGGGCAGATCCAAT 57.379 52.632 0.00 0.00 36.21 3.16
2916 2982 1.870064 CCAAAGGGGCAGATCCAATT 58.130 50.000 0.00 0.00 36.21 2.32
2917 2983 3.030873 CCAAAGGGGCAGATCCAATTA 57.969 47.619 0.00 0.00 36.21 1.40
2918 2984 3.373830 CCAAAGGGGCAGATCCAATTAA 58.626 45.455 0.00 0.00 36.21 1.40
2919 2985 3.969312 CCAAAGGGGCAGATCCAATTAAT 59.031 43.478 0.00 0.00 36.21 1.40
2920 2986 4.409901 CCAAAGGGGCAGATCCAATTAATT 59.590 41.667 0.00 0.00 36.21 1.40
2921 2987 5.104402 CCAAAGGGGCAGATCCAATTAATTT 60.104 40.000 0.00 0.00 36.21 1.82
2922 2988 6.417258 CAAAGGGGCAGATCCAATTAATTTT 58.583 36.000 0.00 0.00 36.21 1.82
2923 2989 5.619132 AGGGGCAGATCCAATTAATTTTG 57.381 39.130 0.00 0.00 36.21 2.44
2924 2990 4.409901 AGGGGCAGATCCAATTAATTTTGG 59.590 41.667 0.00 2.89 46.28 3.28
2925 2991 4.164030 GGGGCAGATCCAATTAATTTTGGT 59.836 41.667 8.44 0.00 45.32 3.67
2926 2992 5.359756 GGGCAGATCCAATTAATTTTGGTC 58.640 41.667 8.44 4.25 45.32 4.02
2927 2993 5.104982 GGGCAGATCCAATTAATTTTGGTCA 60.105 40.000 8.44 0.00 45.32 4.02
2928 2994 6.408434 GGGCAGATCCAATTAATTTTGGTCAT 60.408 38.462 8.44 0.00 45.32 3.06
2929 2995 6.703165 GGCAGATCCAATTAATTTTGGTCATC 59.297 38.462 8.44 5.88 45.32 2.92
2930 2996 7.267128 GCAGATCCAATTAATTTTGGTCATCA 58.733 34.615 8.44 0.00 45.32 3.07
2931 2997 7.765360 GCAGATCCAATTAATTTTGGTCATCAA 59.235 33.333 8.44 0.00 45.32 2.57
2932 2998 9.656040 CAGATCCAATTAATTTTGGTCATCAAA 57.344 29.630 8.44 0.00 45.32 2.69
2941 3007 9.993454 TTAATTTTGGTCATCAAATCATGTCAA 57.007 25.926 0.00 0.00 43.95 3.18
2943 3009 9.509956 AATTTTGGTCATCAAATCATGTCAATT 57.490 25.926 0.00 0.00 43.95 2.32
2944 3010 8.537049 TTTTGGTCATCAAATCATGTCAATTC 57.463 30.769 0.00 0.00 43.95 2.17
2945 3011 6.837471 TGGTCATCAAATCATGTCAATTCA 57.163 33.333 0.00 0.00 0.00 2.57
2946 3012 7.229581 TGGTCATCAAATCATGTCAATTCAA 57.770 32.000 0.00 0.00 0.00 2.69
2947 3013 7.092079 TGGTCATCAAATCATGTCAATTCAAC 58.908 34.615 0.00 0.00 0.00 3.18
2948 3014 6.252015 GGTCATCAAATCATGTCAATTCAACG 59.748 38.462 0.00 0.00 0.00 4.10
2949 3015 7.022979 GTCATCAAATCATGTCAATTCAACGA 58.977 34.615 0.00 0.00 0.00 3.85
2950 3016 7.007725 GTCATCAAATCATGTCAATTCAACGAC 59.992 37.037 0.00 0.00 0.00 4.34
2951 3017 5.698832 TCAAATCATGTCAATTCAACGACC 58.301 37.500 0.00 0.00 0.00 4.79
2952 3018 5.473162 TCAAATCATGTCAATTCAACGACCT 59.527 36.000 0.00 0.00 0.00 3.85
2953 3019 6.652900 TCAAATCATGTCAATTCAACGACCTA 59.347 34.615 0.00 0.00 0.00 3.08
2954 3020 6.668541 AATCATGTCAATTCAACGACCTAG 57.331 37.500 0.00 0.00 0.00 3.02
2955 3021 5.400066 TCATGTCAATTCAACGACCTAGA 57.600 39.130 0.00 0.00 0.00 2.43
2956 3022 5.168569 TCATGTCAATTCAACGACCTAGAC 58.831 41.667 0.00 0.00 0.00 2.59
2957 3023 4.866508 TGTCAATTCAACGACCTAGACT 57.133 40.909 0.00 0.00 0.00 3.24
2958 3024 4.556233 TGTCAATTCAACGACCTAGACTG 58.444 43.478 0.00 0.00 0.00 3.51
2959 3025 4.038763 TGTCAATTCAACGACCTAGACTGT 59.961 41.667 0.00 0.00 0.00 3.55
2960 3026 4.386049 GTCAATTCAACGACCTAGACTGTG 59.614 45.833 0.00 0.00 0.00 3.66
2961 3027 4.038763 TCAATTCAACGACCTAGACTGTGT 59.961 41.667 0.00 0.00 0.00 3.72
2962 3028 3.637998 TTCAACGACCTAGACTGTGTC 57.362 47.619 0.00 0.00 0.00 3.67
2963 3029 2.578786 TCAACGACCTAGACTGTGTCA 58.421 47.619 0.00 0.00 34.60 3.58
2964 3030 2.953648 TCAACGACCTAGACTGTGTCAA 59.046 45.455 0.00 0.00 34.60 3.18
2965 3031 3.572682 TCAACGACCTAGACTGTGTCAAT 59.427 43.478 0.00 0.00 34.60 2.57
2966 3032 3.577649 ACGACCTAGACTGTGTCAATG 57.422 47.619 0.00 0.00 34.60 2.82
2967 3033 2.891580 ACGACCTAGACTGTGTCAATGT 59.108 45.455 0.00 0.00 34.60 2.71
2968 3034 3.057456 ACGACCTAGACTGTGTCAATGTC 60.057 47.826 0.00 2.96 34.60 3.06
2969 3035 3.502920 GACCTAGACTGTGTCAATGTCG 58.497 50.000 0.00 0.00 34.60 4.35
2970 3036 3.154710 ACCTAGACTGTGTCAATGTCGA 58.845 45.455 0.00 0.00 34.60 4.20
2971 3037 3.191581 ACCTAGACTGTGTCAATGTCGAG 59.808 47.826 0.00 8.58 34.60 4.04
2972 3038 2.071688 AGACTGTGTCAATGTCGAGC 57.928 50.000 0.46 0.00 34.60 5.03
2973 3039 0.710567 GACTGTGTCAATGTCGAGCG 59.289 55.000 0.00 0.00 32.09 5.03
2974 3040 1.284982 ACTGTGTCAATGTCGAGCGC 61.285 55.000 0.00 0.00 0.00 5.92
2975 3041 1.006220 TGTGTCAATGTCGAGCGCT 60.006 52.632 11.27 11.27 0.00 5.92
2976 3042 1.008875 TGTGTCAATGTCGAGCGCTC 61.009 55.000 27.64 27.64 0.00 5.03
2977 3043 1.008875 GTGTCAATGTCGAGCGCTCA 61.009 55.000 34.69 18.66 0.00 4.26
2978 3044 0.319469 TGTCAATGTCGAGCGCTCAA 60.319 50.000 34.69 17.41 0.00 3.02
2979 3045 0.093705 GTCAATGTCGAGCGCTCAAC 59.906 55.000 34.69 28.50 0.00 3.18
2980 3046 0.319469 TCAATGTCGAGCGCTCAACA 60.319 50.000 31.47 31.47 0.00 3.33
2981 3047 0.723414 CAATGTCGAGCGCTCAACAT 59.277 50.000 32.86 32.86 0.00 2.71
2982 3048 0.723414 AATGTCGAGCGCTCAACATG 59.277 50.000 37.10 21.43 0.00 3.21
2983 3049 0.390340 ATGTCGAGCGCTCAACATGT 60.390 50.000 36.29 19.54 0.00 3.21
2984 3050 0.599991 TGTCGAGCGCTCAACATGTT 60.600 50.000 34.69 4.92 0.00 2.71
2985 3051 0.512952 GTCGAGCGCTCAACATGTTT 59.487 50.000 34.69 0.00 0.00 2.83
2986 3052 1.724623 GTCGAGCGCTCAACATGTTTA 59.275 47.619 34.69 0.00 0.00 2.01
2987 3053 1.992667 TCGAGCGCTCAACATGTTTAG 59.007 47.619 34.69 14.27 0.00 1.85
2988 3054 1.527793 CGAGCGCTCAACATGTTTAGC 60.528 52.381 34.69 27.50 36.68 3.09
2992 3058 1.606606 GCTCAACATGTTTAGCGTGC 58.393 50.000 24.62 14.72 37.62 5.34
2993 3059 1.069296 GCTCAACATGTTTAGCGTGCA 60.069 47.619 24.62 0.00 37.62 4.57
2994 3060 2.843077 CTCAACATGTTTAGCGTGCAG 58.157 47.619 8.77 0.00 37.62 4.41
2995 3061 2.217750 TCAACATGTTTAGCGTGCAGT 58.782 42.857 8.77 0.00 37.62 4.40
2996 3062 2.616376 TCAACATGTTTAGCGTGCAGTT 59.384 40.909 8.77 0.00 37.62 3.16
2997 3063 3.810386 TCAACATGTTTAGCGTGCAGTTA 59.190 39.130 8.77 0.00 37.62 2.24
2998 3064 4.273724 TCAACATGTTTAGCGTGCAGTTAA 59.726 37.500 8.77 0.00 37.62 2.01
2999 3065 5.049060 TCAACATGTTTAGCGTGCAGTTAAT 60.049 36.000 8.77 0.00 37.62 1.40
3000 3066 5.371115 ACATGTTTAGCGTGCAGTTAATT 57.629 34.783 0.00 0.00 37.62 1.40
3001 3067 5.768317 ACATGTTTAGCGTGCAGTTAATTT 58.232 33.333 0.00 0.00 37.62 1.82
3002 3068 5.856455 ACATGTTTAGCGTGCAGTTAATTTC 59.144 36.000 0.00 0.00 37.62 2.17
3003 3069 5.425577 TGTTTAGCGTGCAGTTAATTTCA 57.574 34.783 0.00 0.00 0.00 2.69
3004 3070 6.007936 TGTTTAGCGTGCAGTTAATTTCAT 57.992 33.333 0.00 0.00 0.00 2.57
3005 3071 5.855925 TGTTTAGCGTGCAGTTAATTTCATG 59.144 36.000 0.00 0.00 0.00 3.07
3006 3072 5.621197 TTAGCGTGCAGTTAATTTCATGT 57.379 34.783 0.00 0.00 0.00 3.21
3007 3073 4.083581 AGCGTGCAGTTAATTTCATGTC 57.916 40.909 0.00 0.00 0.00 3.06
3008 3074 3.501828 AGCGTGCAGTTAATTTCATGTCA 59.498 39.130 0.00 0.00 0.00 3.58
3009 3075 4.023279 AGCGTGCAGTTAATTTCATGTCAA 60.023 37.500 0.00 0.00 0.00 3.18
3010 3076 4.679197 GCGTGCAGTTAATTTCATGTCAAA 59.321 37.500 0.00 0.00 0.00 2.69
3011 3077 5.345741 GCGTGCAGTTAATTTCATGTCAAAT 59.654 36.000 0.00 0.00 0.00 2.32
3012 3078 6.526325 GCGTGCAGTTAATTTCATGTCAAATA 59.474 34.615 0.00 0.00 0.00 1.40
3013 3079 7.220683 GCGTGCAGTTAATTTCATGTCAAATAT 59.779 33.333 0.00 0.00 0.00 1.28
3014 3080 9.715123 CGTGCAGTTAATTTCATGTCAAATATA 57.285 29.630 0.00 0.00 0.00 0.86
3054 3120 6.110411 ACTCCAAATATATACTCCAACCGG 57.890 41.667 0.00 0.00 0.00 5.28
3055 3121 4.901868 TCCAAATATATACTCCAACCGGC 58.098 43.478 0.00 0.00 0.00 6.13
3106 3172 1.615424 TCTTGGGCCCACCTCCTAC 60.615 63.158 28.70 0.00 41.11 3.18
3133 3200 3.580895 TCTGTATAGTTGAGGTTGTGGCA 59.419 43.478 0.00 0.00 0.00 4.92
3136 3203 4.225042 TGTATAGTTGAGGTTGTGGCATCT 59.775 41.667 0.00 0.00 0.00 2.90
3177 3244 1.269778 CGTATCTGGTGCACCGATCAT 60.270 52.381 32.28 22.75 39.43 2.45
3179 3246 3.552068 CGTATCTGGTGCACCGATCATTA 60.552 47.826 32.28 19.79 39.43 1.90
3211 3279 5.086104 TGCACACCTTATTCTAGTCTTCC 57.914 43.478 0.00 0.00 0.00 3.46
3410 3541 3.362797 ACTCCGCGTCGCTCTTCA 61.363 61.111 16.36 0.00 0.00 3.02
3469 3684 1.335882 GCCGAACCCTAACCCTAGCT 61.336 60.000 0.00 0.00 0.00 3.32
3472 3687 1.875488 GAACCCTAACCCTAGCTCCA 58.125 55.000 0.00 0.00 0.00 3.86
3475 3694 1.054978 CCCTAACCCTAGCTCCACCC 61.055 65.000 0.00 0.00 0.00 4.61
3517 3736 1.815212 CTCGATGCGCCATGAGTTCG 61.815 60.000 4.18 2.43 0.00 3.95
3520 3742 2.082437 GATGCGCCATGAGTTCGTCG 62.082 60.000 4.18 0.00 0.00 5.12
3532 3754 0.813184 GTTCGTCGTCCTCCACCATA 59.187 55.000 0.00 0.00 0.00 2.74
3580 3802 2.103771 CACCCTCGTCCATGATCTCAAT 59.896 50.000 0.00 0.00 0.00 2.57
3613 3835 0.327924 TTCCGGTGGTGCTTGATCAT 59.672 50.000 0.00 0.00 0.00 2.45
3618 3840 2.381911 GGTGGTGCTTGATCATTCCAT 58.618 47.619 0.00 0.00 0.00 3.41
3678 3903 2.202623 CGAGTACCTGCTCCACGC 60.203 66.667 0.00 0.00 39.77 5.34
3795 4020 1.070134 CTCCAACGACCTCTTCCACAA 59.930 52.381 0.00 0.00 0.00 3.33
3825 4050 2.028766 GATGACGACGACGCCTACGA 62.029 60.000 7.30 0.00 43.93 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.895231 GATGCCCTGATGATGCGCA 60.895 57.895 14.96 14.96 0.00 6.09
60 61 2.131405 ATCTGTCGGAGATGCCCTG 58.869 57.895 0.00 0.00 40.19 4.45
71 72 8.759641 CAAAAATAGAGGAAGTATCATCTGTCG 58.240 37.037 3.48 0.00 45.70 4.35
162 163 8.622948 AGTCTTCAGTTCGAAATAGGATTTTT 57.377 30.769 0.00 0.00 31.71 1.94
165 166 9.319143 CATTAGTCTTCAGTTCGAAATAGGATT 57.681 33.333 0.00 0.00 31.71 3.01
175 176 6.712241 ATGTTCACATTAGTCTTCAGTTCG 57.288 37.500 0.00 0.00 31.37 3.95
202 203 9.647918 TCCCTTATAATTGTGGCATGTTTAATA 57.352 29.630 0.00 0.00 0.00 0.98
224 225 4.081087 AGTGCACGTATCAAACTTATCCCT 60.081 41.667 12.01 0.00 0.00 4.20
262 273 8.339344 TGCATACAATCATTATATCAACAGGG 57.661 34.615 0.00 0.00 0.00 4.45
263 274 9.999009 GATGCATACAATCATTATATCAACAGG 57.001 33.333 0.00 0.00 0.00 4.00
264 275 9.698617 CGATGCATACAATCATTATATCAACAG 57.301 33.333 0.00 0.00 0.00 3.16
265 276 8.177013 GCGATGCATACAATCATTATATCAACA 58.823 33.333 0.00 0.00 0.00 3.33
266 277 8.393366 AGCGATGCATACAATCATTATATCAAC 58.607 33.333 0.00 0.00 0.00 3.18
267 278 8.496707 AGCGATGCATACAATCATTATATCAA 57.503 30.769 0.00 0.00 0.00 2.57
268 279 8.496707 AAGCGATGCATACAATCATTATATCA 57.503 30.769 0.00 0.00 0.00 2.15
269 280 9.218359 CAAAGCGATGCATACAATCATTATATC 57.782 33.333 0.00 0.00 0.00 1.63
270 281 8.949177 TCAAAGCGATGCATACAATCATTATAT 58.051 29.630 0.00 0.00 0.00 0.86
271 282 8.321650 TCAAAGCGATGCATACAATCATTATA 57.678 30.769 0.00 0.00 0.00 0.98
272 283 7.205737 TCAAAGCGATGCATACAATCATTAT 57.794 32.000 0.00 0.00 0.00 1.28
278 289 5.759763 TCTGTATCAAAGCGATGCATACAAT 59.240 36.000 0.00 0.00 44.51 2.71
279 290 5.115480 TCTGTATCAAAGCGATGCATACAA 58.885 37.500 0.00 0.00 44.51 2.41
428 439 6.740960 GCCTAGTTCTCATAGCAATGTGATCT 60.741 42.308 0.00 6.38 38.38 2.75
429 440 5.407995 GCCTAGTTCTCATAGCAATGTGATC 59.592 44.000 0.00 0.00 35.97 2.92
430 441 5.071519 AGCCTAGTTCTCATAGCAATGTGAT 59.928 40.000 0.00 0.00 35.97 3.06
431 442 4.406972 AGCCTAGTTCTCATAGCAATGTGA 59.593 41.667 0.00 0.00 34.61 3.58
432 443 4.701765 AGCCTAGTTCTCATAGCAATGTG 58.298 43.478 0.00 0.00 34.50 3.21
433 444 5.510520 GCTAGCCTAGTTCTCATAGCAATGT 60.511 44.000 2.29 0.00 36.50 2.71
434 445 4.928615 GCTAGCCTAGTTCTCATAGCAATG 59.071 45.833 2.29 0.00 36.50 2.82
435 446 4.020662 GGCTAGCCTAGTTCTCATAGCAAT 60.021 45.833 27.17 0.00 37.86 3.56
436 447 3.322254 GGCTAGCCTAGTTCTCATAGCAA 59.678 47.826 27.17 0.00 37.86 3.91
437 448 2.894126 GGCTAGCCTAGTTCTCATAGCA 59.106 50.000 27.17 0.00 37.86 3.49
438 449 3.161866 AGGCTAGCCTAGTTCTCATAGC 58.838 50.000 35.28 1.76 46.14 2.97
457 468 1.577328 CGCCACACTTTGCCACTAGG 61.577 60.000 0.00 0.00 38.23 3.02
458 469 0.602638 TCGCCACACTTTGCCACTAG 60.603 55.000 0.00 0.00 0.00 2.57
459 470 0.602638 CTCGCCACACTTTGCCACTA 60.603 55.000 0.00 0.00 0.00 2.74
460 471 1.893808 CTCGCCACACTTTGCCACT 60.894 57.895 0.00 0.00 0.00 4.00
461 472 1.845809 CTCTCGCCACACTTTGCCAC 61.846 60.000 0.00 0.00 0.00 5.01
462 473 1.597854 CTCTCGCCACACTTTGCCA 60.598 57.895 0.00 0.00 0.00 4.92
463 474 1.166531 AACTCTCGCCACACTTTGCC 61.167 55.000 0.00 0.00 0.00 4.52
464 475 0.235926 GAACTCTCGCCACACTTTGC 59.764 55.000 0.00 0.00 0.00 3.68
465 476 1.581934 TGAACTCTCGCCACACTTTG 58.418 50.000 0.00 0.00 0.00 2.77
466 477 2.325583 TTGAACTCTCGCCACACTTT 57.674 45.000 0.00 0.00 0.00 2.66
467 478 2.325583 TTTGAACTCTCGCCACACTT 57.674 45.000 0.00 0.00 0.00 3.16
468 479 2.037772 AGATTTGAACTCTCGCCACACT 59.962 45.455 0.00 0.00 0.00 3.55
469 480 2.413453 GAGATTTGAACTCTCGCCACAC 59.587 50.000 0.00 0.00 30.62 3.82
470 481 2.688507 GAGATTTGAACTCTCGCCACA 58.311 47.619 0.00 0.00 30.62 4.17
476 487 2.163815 TCCCGACGAGATTTGAACTCTC 59.836 50.000 0.00 2.76 36.58 3.20
477 488 2.164624 CTCCCGACGAGATTTGAACTCT 59.835 50.000 0.00 0.00 41.63 3.24
478 489 2.094649 ACTCCCGACGAGATTTGAACTC 60.095 50.000 0.00 0.00 41.63 3.01
479 490 1.893801 ACTCCCGACGAGATTTGAACT 59.106 47.619 0.00 0.00 41.63 3.01
480 491 1.993370 CACTCCCGACGAGATTTGAAC 59.007 52.381 0.00 0.00 41.63 3.18
481 492 1.890489 TCACTCCCGACGAGATTTGAA 59.110 47.619 0.00 0.00 41.63 2.69
482 493 1.541379 TCACTCCCGACGAGATTTGA 58.459 50.000 0.00 0.00 41.63 2.69
483 494 2.363788 TTCACTCCCGACGAGATTTG 57.636 50.000 0.00 0.00 41.63 2.32
484 495 3.611766 AATTCACTCCCGACGAGATTT 57.388 42.857 0.00 0.00 41.63 2.17
485 496 3.611766 AAATTCACTCCCGACGAGATT 57.388 42.857 0.00 0.00 41.63 2.40
486 497 3.611766 AAAATTCACTCCCGACGAGAT 57.388 42.857 0.00 0.00 41.63 2.75
487 498 3.064207 CAAAAATTCACTCCCGACGAGA 58.936 45.455 0.00 0.00 41.63 4.04
488 499 3.064207 TCAAAAATTCACTCCCGACGAG 58.936 45.455 0.00 0.00 44.95 4.18
489 500 3.114668 TCAAAAATTCACTCCCGACGA 57.885 42.857 0.00 0.00 0.00 4.20
490 501 4.403453 GAATCAAAAATTCACTCCCGACG 58.597 43.478 0.00 0.00 0.00 5.12
491 502 4.459337 AGGAATCAAAAATTCACTCCCGAC 59.541 41.667 0.72 0.00 0.00 4.79
492 503 4.662278 AGGAATCAAAAATTCACTCCCGA 58.338 39.130 0.72 0.00 0.00 5.14
493 504 4.458989 TGAGGAATCAAAAATTCACTCCCG 59.541 41.667 10.81 0.00 30.89 5.14
494 505 5.336770 GGTGAGGAATCAAAAATTCACTCCC 60.337 44.000 2.92 8.93 36.20 4.30
495 506 5.619981 CGGTGAGGAATCAAAAATTCACTCC 60.620 44.000 2.92 8.30 36.20 3.85
496 507 5.393962 CGGTGAGGAATCAAAAATTCACTC 58.606 41.667 2.92 5.23 36.20 3.51
497 508 4.218417 CCGGTGAGGAATCAAAAATTCACT 59.782 41.667 0.00 0.00 45.00 3.41
498 509 4.485163 CCGGTGAGGAATCAAAAATTCAC 58.515 43.478 0.00 0.00 45.00 3.18
499 510 4.782019 CCGGTGAGGAATCAAAAATTCA 57.218 40.909 0.00 0.00 45.00 2.57
512 523 2.124570 CAAGCCCATCCGGTGAGG 60.125 66.667 0.00 1.12 42.97 3.86
513 524 1.002134 AACAAGCCCATCCGGTGAG 60.002 57.895 0.00 0.00 0.00 3.51
514 525 1.002624 GAACAAGCCCATCCGGTGA 60.003 57.895 0.00 0.00 0.00 4.02
515 526 0.251916 TAGAACAAGCCCATCCGGTG 59.748 55.000 0.00 0.00 0.00 4.94
516 527 1.213296 ATAGAACAAGCCCATCCGGT 58.787 50.000 0.00 0.00 0.00 5.28
517 528 3.485463 TTATAGAACAAGCCCATCCGG 57.515 47.619 0.00 0.00 0.00 5.14
518 529 5.828299 TTTTTATAGAACAAGCCCATCCG 57.172 39.130 0.00 0.00 0.00 4.18
519 530 8.860088 ACATATTTTTATAGAACAAGCCCATCC 58.140 33.333 0.00 0.00 0.00 3.51
520 531 9.899226 GACATATTTTTATAGAACAAGCCCATC 57.101 33.333 0.00 0.00 0.00 3.51
521 532 9.646522 AGACATATTTTTATAGAACAAGCCCAT 57.353 29.630 0.00 0.00 0.00 4.00
522 533 9.474313 AAGACATATTTTTATAGAACAAGCCCA 57.526 29.630 0.00 0.00 0.00 5.36
540 551 9.445878 CCATGAACATTAGCATCTAAGACATAT 57.554 33.333 0.00 0.00 0.00 1.78
541 552 8.650490 TCCATGAACATTAGCATCTAAGACATA 58.350 33.333 0.00 0.00 0.00 2.29
542 553 7.512130 TCCATGAACATTAGCATCTAAGACAT 58.488 34.615 0.00 0.00 0.00 3.06
543 554 6.888105 TCCATGAACATTAGCATCTAAGACA 58.112 36.000 0.00 0.00 0.00 3.41
544 555 7.877097 AGATCCATGAACATTAGCATCTAAGAC 59.123 37.037 0.00 0.00 0.00 3.01
545 556 7.971201 AGATCCATGAACATTAGCATCTAAGA 58.029 34.615 0.00 0.00 0.00 2.10
546 557 7.876582 TGAGATCCATGAACATTAGCATCTAAG 59.123 37.037 0.00 0.00 0.00 2.18
547 558 7.738847 TGAGATCCATGAACATTAGCATCTAA 58.261 34.615 0.00 0.00 0.00 2.10
548 559 7.307131 TGAGATCCATGAACATTAGCATCTA 57.693 36.000 0.00 0.00 0.00 1.98
549 560 6.183810 TGAGATCCATGAACATTAGCATCT 57.816 37.500 0.00 0.00 0.00 2.90
550 561 7.450124 AATGAGATCCATGAACATTAGCATC 57.550 36.000 0.00 0.00 35.24 3.91
551 562 7.834881 AAATGAGATCCATGAACATTAGCAT 57.165 32.000 0.00 0.00 35.24 3.79
552 563 7.649533 AAAATGAGATCCATGAACATTAGCA 57.350 32.000 0.00 0.00 35.24 3.49
577 588 5.941058 TCCAAATAGCCGTGTGATCTAAAAA 59.059 36.000 0.00 0.00 0.00 1.94
578 589 5.492895 TCCAAATAGCCGTGTGATCTAAAA 58.507 37.500 0.00 0.00 0.00 1.52
579 590 5.092554 TCCAAATAGCCGTGTGATCTAAA 57.907 39.130 0.00 0.00 0.00 1.85
580 591 4.746535 TCCAAATAGCCGTGTGATCTAA 57.253 40.909 0.00 0.00 0.00 2.10
581 592 4.955811 ATCCAAATAGCCGTGTGATCTA 57.044 40.909 0.00 0.00 0.00 1.98
587 598 5.057149 GTCTTGATATCCAAATAGCCGTGT 58.943 41.667 0.00 0.00 33.76 4.49
630 643 8.510505 TCACAATGAACACATAATCAAAATCGA 58.489 29.630 0.00 0.00 0.00 3.59
642 655 6.927416 ACATATGCTTTCACAATGAACACAT 58.073 32.000 1.58 9.31 35.89 3.21
644 657 7.642071 AAACATATGCTTTCACAATGAACAC 57.358 32.000 1.58 0.00 35.89 3.32
645 658 8.659925 AAAAACATATGCTTTCACAATGAACA 57.340 26.923 1.58 0.00 35.89 3.18
670 683 7.644490 AGCATATGTTTTCACTTCACGTAAAA 58.356 30.769 4.29 0.00 0.00 1.52
672 685 6.795098 AGCATATGTTTTCACTTCACGTAA 57.205 33.333 4.29 0.00 0.00 3.18
673 686 6.598525 CAAGCATATGTTTTCACTTCACGTA 58.401 36.000 1.53 0.00 0.00 3.57
674 687 5.451908 CAAGCATATGTTTTCACTTCACGT 58.548 37.500 1.53 0.00 0.00 4.49
675 688 4.321745 GCAAGCATATGTTTTCACTTCACG 59.678 41.667 1.53 0.00 0.00 4.35
676 689 5.464168 AGCAAGCATATGTTTTCACTTCAC 58.536 37.500 1.53 0.00 0.00 3.18
677 690 5.710513 AGCAAGCATATGTTTTCACTTCA 57.289 34.783 1.53 0.00 0.00 3.02
694 707 1.741706 CACAATCCACCAGCTAGCAAG 59.258 52.381 18.83 10.07 0.00 4.01
695 708 1.350684 TCACAATCCACCAGCTAGCAA 59.649 47.619 18.83 0.00 0.00 3.91
696 709 0.983467 TCACAATCCACCAGCTAGCA 59.017 50.000 18.83 0.00 0.00 3.49
697 710 2.338577 ATCACAATCCACCAGCTAGC 57.661 50.000 6.62 6.62 0.00 3.42
698 711 3.750130 GCATATCACAATCCACCAGCTAG 59.250 47.826 0.00 0.00 0.00 3.42
699 712 3.392285 AGCATATCACAATCCACCAGCTA 59.608 43.478 0.00 0.00 0.00 3.32
700 713 2.174210 AGCATATCACAATCCACCAGCT 59.826 45.455 0.00 0.00 0.00 4.24
701 714 2.292569 CAGCATATCACAATCCACCAGC 59.707 50.000 0.00 0.00 0.00 4.85
702 715 3.812262 TCAGCATATCACAATCCACCAG 58.188 45.455 0.00 0.00 0.00 4.00
703 716 3.929955 TCAGCATATCACAATCCACCA 57.070 42.857 0.00 0.00 0.00 4.17
704 717 3.504906 CCATCAGCATATCACAATCCACC 59.495 47.826 0.00 0.00 0.00 4.61
705 718 4.139786 ACCATCAGCATATCACAATCCAC 58.860 43.478 0.00 0.00 0.00 4.02
706 719 4.442401 ACCATCAGCATATCACAATCCA 57.558 40.909 0.00 0.00 0.00 3.41
707 720 6.175471 TCATACCATCAGCATATCACAATCC 58.825 40.000 0.00 0.00 0.00 3.01
708 721 7.860918 ATCATACCATCAGCATATCACAATC 57.139 36.000 0.00 0.00 0.00 2.67
709 722 9.338622 CATATCATACCATCAGCATATCACAAT 57.661 33.333 0.00 0.00 0.00 2.71
710 723 8.542080 TCATATCATACCATCAGCATATCACAA 58.458 33.333 0.00 0.00 0.00 3.33
711 724 8.081517 TCATATCATACCATCAGCATATCACA 57.918 34.615 0.00 0.00 0.00 3.58
712 725 8.989980 CATCATATCATACCATCAGCATATCAC 58.010 37.037 0.00 0.00 0.00 3.06
713 726 8.154856 CCATCATATCATACCATCAGCATATCA 58.845 37.037 0.00 0.00 0.00 2.15
714 727 8.373220 TCCATCATATCATACCATCAGCATATC 58.627 37.037 0.00 0.00 0.00 1.63
715 728 8.155510 GTCCATCATATCATACCATCAGCATAT 58.844 37.037 0.00 0.00 0.00 1.78
716 729 7.126115 TGTCCATCATATCATACCATCAGCATA 59.874 37.037 0.00 0.00 0.00 3.14
717 730 6.069847 TGTCCATCATATCATACCATCAGCAT 60.070 38.462 0.00 0.00 0.00 3.79
718 731 5.248934 TGTCCATCATATCATACCATCAGCA 59.751 40.000 0.00 0.00 0.00 4.41
719 732 5.737860 TGTCCATCATATCATACCATCAGC 58.262 41.667 0.00 0.00 0.00 4.26
720 733 6.260271 GCATGTCCATCATATCATACCATCAG 59.740 42.308 0.00 0.00 34.67 2.90
721 734 6.117488 GCATGTCCATCATATCATACCATCA 58.883 40.000 0.00 0.00 34.67 3.07
722 735 6.117488 TGCATGTCCATCATATCATACCATC 58.883 40.000 0.00 0.00 34.67 3.51
723 736 6.069705 TGCATGTCCATCATATCATACCAT 57.930 37.500 0.00 0.00 34.67 3.55
724 737 5.502089 TGCATGTCCATCATATCATACCA 57.498 39.130 0.00 0.00 34.67 3.25
725 738 6.117488 TGATGCATGTCCATCATATCATACC 58.883 40.000 2.46 0.00 44.79 2.73
734 747 3.076079 ACAAGTGATGCATGTCCATCA 57.924 42.857 2.46 10.82 46.78 3.07
735 748 3.441222 TCAACAAGTGATGCATGTCCATC 59.559 43.478 2.46 6.41 41.51 3.51
736 749 3.423749 TCAACAAGTGATGCATGTCCAT 58.576 40.909 2.46 0.00 0.00 3.41
747 760 7.800155 TGAGTCATGTAAAATCAACAAGTGA 57.200 32.000 0.00 0.00 41.67 3.41
778 791 7.514721 AGTTAGAATCAACCACCTAGTTTTCA 58.485 34.615 0.00 0.00 0.00 2.69
895 938 2.568956 TCAAGTGAGACAAGATGAGGGG 59.431 50.000 0.00 0.00 0.00 4.79
910 953 2.445565 TAGCTGTCAGTGCTCAAGTG 57.554 50.000 0.00 0.00 41.46 3.16
921 964 0.761187 GGGGCAGATGATAGCTGTCA 59.239 55.000 16.05 16.05 39.67 3.58
923 966 0.471617 GTGGGGCAGATGATAGCTGT 59.528 55.000 0.00 0.00 35.81 4.40
928 971 5.606749 AGTACTTAATGTGGGGCAGATGATA 59.393 40.000 0.00 0.00 0.00 2.15
935 978 2.026636 GTGGAGTACTTAATGTGGGGCA 60.027 50.000 0.00 0.00 0.00 5.36
939 982 4.000988 GGTGTGTGGAGTACTTAATGTGG 58.999 47.826 0.00 0.00 0.00 4.17
949 992 0.756070 TGGTGACGGTGTGTGGAGTA 60.756 55.000 0.00 0.00 0.00 2.59
954 997 2.616330 GCCATGGTGACGGTGTGTG 61.616 63.158 14.67 0.00 0.00 3.82
955 998 2.281484 GCCATGGTGACGGTGTGT 60.281 61.111 14.67 0.00 0.00 3.72
958 1001 3.434319 GCAGCCATGGTGACGGTG 61.434 66.667 14.67 3.62 32.22 4.94
1026 1083 3.951680 GGAGAGGTAGGAGAAAGAGTGAG 59.048 52.174 0.00 0.00 0.00 3.51
1081 1138 3.534970 TTGCGCCGTGTGTTGATGC 62.535 57.895 4.18 0.00 0.00 3.91
1082 1139 1.440850 CTTGCGCCGTGTGTTGATG 60.441 57.895 4.18 0.00 0.00 3.07
1086 1143 1.063488 GTTTCTTGCGCCGTGTGTT 59.937 52.632 4.18 0.00 0.00 3.32
1095 1152 3.788766 CCGGGAGCGTTTCTTGCG 61.789 66.667 0.00 0.00 37.44 4.85
1335 1392 8.035394 TGTAGAGCTAGAAAAGTACAGATTTGG 58.965 37.037 0.00 0.00 0.00 3.28
1337 1394 9.425577 GTTGTAGAGCTAGAAAAGTACAGATTT 57.574 33.333 0.00 0.00 0.00 2.17
1349 1414 4.149598 TGTGAGTGGTTGTAGAGCTAGAA 58.850 43.478 0.00 0.00 0.00 2.10
1362 1427 0.469331 TCCGAGGAGTTGTGAGTGGT 60.469 55.000 0.00 0.00 0.00 4.16
1373 1438 6.492087 AGAAGATTCTAAATAGGTCCGAGGAG 59.508 42.308 0.00 0.00 35.34 3.69
1410 1475 8.632295 AGGCGACTGGAATTTGAGCAAATTTT 62.632 38.462 18.88 2.72 44.21 1.82
1411 1476 7.246698 AGGCGACTGGAATTTGAGCAAATTT 62.247 40.000 18.88 6.50 44.21 1.82
1412 1477 5.829223 AGGCGACTGGAATTTGAGCAAATT 61.829 41.667 18.16 18.16 45.59 1.82
1413 1478 2.094545 GGCGACTGGAATTTGAGCAAAT 60.095 45.455 2.74 2.74 42.35 2.32
1414 1479 1.269448 GGCGACTGGAATTTGAGCAAA 59.731 47.619 0.00 0.00 34.46 3.68
1415 1480 0.881118 GGCGACTGGAATTTGAGCAA 59.119 50.000 0.00 0.00 0.00 3.91
1416 1481 0.036732 AGGCGACTGGAATTTGAGCA 59.963 50.000 0.00 0.00 41.13 4.26
1417 1482 2.859992 AGGCGACTGGAATTTGAGC 58.140 52.632 0.00 0.00 41.13 4.26
1428 1493 4.516698 CCAATAATGCTATTTCAGGCGACT 59.483 41.667 0.00 0.00 46.44 4.18
1429 1494 4.515191 TCCAATAATGCTATTTCAGGCGAC 59.485 41.667 0.00 0.00 0.00 5.19
1430 1495 4.713553 TCCAATAATGCTATTTCAGGCGA 58.286 39.130 0.00 0.00 0.00 5.54
1431 1496 4.083110 CCTCCAATAATGCTATTTCAGGCG 60.083 45.833 0.00 0.00 0.00 5.52
1432 1497 4.321527 GCCTCCAATAATGCTATTTCAGGC 60.322 45.833 8.09 8.09 39.94 4.85
1433 1498 4.083110 CGCCTCCAATAATGCTATTTCAGG 60.083 45.833 0.00 0.00 31.78 3.86
1434 1499 4.516698 ACGCCTCCAATAATGCTATTTCAG 59.483 41.667 0.00 0.00 0.00 3.02
1435 1500 4.460263 ACGCCTCCAATAATGCTATTTCA 58.540 39.130 0.00 0.00 0.00 2.69
1436 1501 5.468746 TGTACGCCTCCAATAATGCTATTTC 59.531 40.000 0.00 0.00 0.00 2.17
1437 1502 5.373222 TGTACGCCTCCAATAATGCTATTT 58.627 37.500 0.00 0.00 0.00 1.40
1438 1503 4.968259 TGTACGCCTCCAATAATGCTATT 58.032 39.130 0.00 0.00 0.00 1.73
1439 1504 4.617253 TGTACGCCTCCAATAATGCTAT 57.383 40.909 0.00 0.00 0.00 2.97
1440 1505 4.409718 TTGTACGCCTCCAATAATGCTA 57.590 40.909 0.00 0.00 0.00 3.49
1441 1506 3.275617 TTGTACGCCTCCAATAATGCT 57.724 42.857 0.00 0.00 0.00 3.79
1442 1507 4.568152 ATTTGTACGCCTCCAATAATGC 57.432 40.909 0.00 0.00 0.00 3.56
1443 1508 6.636850 GCTAAATTTGTACGCCTCCAATAATG 59.363 38.462 0.00 0.00 0.00 1.90
1444 1509 6.320164 TGCTAAATTTGTACGCCTCCAATAAT 59.680 34.615 0.00 0.00 0.00 1.28
1445 1510 5.648526 TGCTAAATTTGTACGCCTCCAATAA 59.351 36.000 0.00 0.00 0.00 1.40
1446 1511 5.186942 TGCTAAATTTGTACGCCTCCAATA 58.813 37.500 0.00 0.00 0.00 1.90
1447 1512 4.013728 TGCTAAATTTGTACGCCTCCAAT 58.986 39.130 0.00 0.00 0.00 3.16
1448 1513 3.413327 TGCTAAATTTGTACGCCTCCAA 58.587 40.909 0.00 0.00 0.00 3.53
1449 1514 3.060736 TGCTAAATTTGTACGCCTCCA 57.939 42.857 0.00 0.00 0.00 3.86
1450 1515 4.428615 TTTGCTAAATTTGTACGCCTCC 57.571 40.909 0.00 0.00 0.00 4.30
1451 1516 4.323602 GCTTTTGCTAAATTTGTACGCCTC 59.676 41.667 0.00 0.00 43.35 4.70
1452 1517 4.234574 GCTTTTGCTAAATTTGTACGCCT 58.765 39.130 0.00 0.00 43.35 5.52
1453 1518 4.561959 GCTTTTGCTAAATTTGTACGCC 57.438 40.909 0.00 0.00 43.35 5.68
1455 1520 7.590286 AGCGATGCTTTTGCTAAATTTGTACG 61.590 38.462 0.00 0.00 43.67 3.67
1456 1521 5.572896 AGCGATGCTTTTGCTAAATTTGTAC 59.427 36.000 0.00 0.00 43.67 2.90
1457 1522 5.572511 CAGCGATGCTTTTGCTAAATTTGTA 59.427 36.000 0.00 0.00 43.66 2.41
1458 1523 4.386652 CAGCGATGCTTTTGCTAAATTTGT 59.613 37.500 0.00 0.00 43.66 2.83
1459 1524 4.722908 GCAGCGATGCTTTTGCTAAATTTG 60.723 41.667 20.22 0.00 43.66 2.32
1460 1525 3.368843 GCAGCGATGCTTTTGCTAAATTT 59.631 39.130 20.22 0.00 43.66 1.82
1461 1526 2.925563 GCAGCGATGCTTTTGCTAAATT 59.074 40.909 20.22 0.00 43.66 1.82
1462 1527 2.094597 TGCAGCGATGCTTTTGCTAAAT 60.095 40.909 27.55 0.00 43.66 1.40
1463 1528 1.269174 TGCAGCGATGCTTTTGCTAAA 59.731 42.857 27.55 0.00 43.66 1.85
1464 1529 0.880441 TGCAGCGATGCTTTTGCTAA 59.120 45.000 27.55 0.00 43.66 3.09
1465 1530 0.880441 TTGCAGCGATGCTTTTGCTA 59.120 45.000 27.55 0.47 43.66 3.49
1466 1531 0.032403 TTTGCAGCGATGCTTTTGCT 59.968 45.000 27.55 0.00 46.64 3.91
1468 1533 3.799137 AAATTTGCAGCGATGCTTTTG 57.201 38.095 27.55 0.00 36.40 2.44
1469 1534 6.484818 AATAAAATTTGCAGCGATGCTTTT 57.515 29.167 27.55 24.31 36.40 2.27
1470 1535 6.484818 AAATAAAATTTGCAGCGATGCTTT 57.515 29.167 27.55 19.83 36.40 3.51
1471 1536 6.484818 AAAATAAAATTTGCAGCGATGCTT 57.515 29.167 27.55 14.51 36.40 3.91
1472 1537 6.813152 ACTAAAATAAAATTTGCAGCGATGCT 59.187 30.769 27.55 7.70 40.77 3.79
1473 1538 6.992766 ACTAAAATAAAATTTGCAGCGATGC 58.007 32.000 20.73 20.73 0.00 3.91
1506 1571 9.062674 CAAGTACGTTCATATTCCGATATACAG 57.937 37.037 0.00 0.00 0.00 2.74
1507 1572 8.024865 CCAAGTACGTTCATATTCCGATATACA 58.975 37.037 0.00 0.00 0.00 2.29
1508 1573 8.239314 TCCAAGTACGTTCATATTCCGATATAC 58.761 37.037 0.00 0.00 0.00 1.47
1509 1574 8.339344 TCCAAGTACGTTCATATTCCGATATA 57.661 34.615 0.00 0.00 0.00 0.86
1510 1575 7.223260 TCCAAGTACGTTCATATTCCGATAT 57.777 36.000 0.00 0.00 0.00 1.63
1535 1601 1.019278 GCGTGGTGACAACATCCGAT 61.019 55.000 7.61 0.00 46.06 4.18
1536 1602 1.666553 GCGTGGTGACAACATCCGA 60.667 57.895 7.61 0.00 46.06 4.55
1537 1603 1.900585 CTGCGTGGTGACAACATCCG 61.901 60.000 0.00 0.00 46.06 4.18
1538 1604 1.577328 CCTGCGTGGTGACAACATCC 61.577 60.000 0.00 0.00 46.06 3.51
1740 1806 3.296709 CTGAGGTCGACGGGGGTTG 62.297 68.421 9.92 0.00 0.00 3.77
1741 1807 2.995574 CTGAGGTCGACGGGGGTT 60.996 66.667 9.92 0.00 0.00 4.11
2157 2223 9.529325 GAATGTAGATTGTGCACTATTGTAGTA 57.471 33.333 19.41 2.87 37.23 1.82
2166 2232 6.369890 CAGTAACTGAATGTAGATTGTGCACT 59.630 38.462 19.41 0.00 32.44 4.40
2167 2233 6.537566 CAGTAACTGAATGTAGATTGTGCAC 58.462 40.000 10.75 10.75 32.44 4.57
2168 2234 5.122239 GCAGTAACTGAATGTAGATTGTGCA 59.878 40.000 0.00 0.00 32.44 4.57
2169 2235 5.352569 AGCAGTAACTGAATGTAGATTGTGC 59.647 40.000 0.00 0.00 32.44 4.57
2256 2322 0.320421 CAAGTGTCGATTCCACCGGT 60.320 55.000 0.00 0.00 33.20 5.28
2301 2367 1.198713 GGGTTCCTCATCAGCTCTGA 58.801 55.000 1.67 1.67 44.59 3.27
2303 2369 1.558756 CTTGGGTTCCTCATCAGCTCT 59.441 52.381 0.00 0.00 0.00 4.09
2360 2426 2.428890 CACTCTAGATTTGCTCCGGACT 59.571 50.000 0.00 0.00 0.00 3.85
2363 2429 1.757118 TCCACTCTAGATTTGCTCCGG 59.243 52.381 0.00 0.00 0.00 5.14
2368 2434 4.111375 TCTTCGTCCACTCTAGATTTGC 57.889 45.455 0.00 0.00 0.00 3.68
2456 2522 3.606595 TCTCTTGGAATCAGCAGAGTG 57.393 47.619 0.00 0.00 35.28 3.51
2702 2768 0.962356 CCAGCACCACCTCCACATTC 60.962 60.000 0.00 0.00 0.00 2.67
2714 2780 1.826385 ACAACAGATTAGCCAGCACC 58.174 50.000 0.00 0.00 0.00 5.01
2723 2789 5.161358 CAGTCGAAGCAGTACAACAGATTA 58.839 41.667 0.00 0.00 0.00 1.75
2757 2823 0.042731 TCGTCCTCCTTCATCCCCTT 59.957 55.000 0.00 0.00 0.00 3.95
2783 2849 1.318158 GCTGCCCTGTTTCCTCCATG 61.318 60.000 0.00 0.00 0.00 3.66
2878 2944 9.649316 CCCTTTGGGTCTTTTTATATTGGTATA 57.351 33.333 0.00 0.00 38.25 1.47
2879 2945 8.547481 CCCTTTGGGTCTTTTTATATTGGTAT 57.453 34.615 0.00 0.00 38.25 2.73
2880 2946 7.964666 CCCTTTGGGTCTTTTTATATTGGTA 57.035 36.000 0.00 0.00 38.25 3.25
2881 2947 6.867519 CCCTTTGGGTCTTTTTATATTGGT 57.132 37.500 0.00 0.00 38.25 3.67
2897 2963 1.870064 AATTGGATCTGCCCCTTTGG 58.130 50.000 0.00 0.00 34.97 3.28
2898 2964 5.619132 AATTAATTGGATCTGCCCCTTTG 57.381 39.130 0.00 0.00 34.97 2.77
2899 2965 6.417258 CAAAATTAATTGGATCTGCCCCTTT 58.583 36.000 0.39 0.00 34.97 3.11
2900 2966 5.993055 CAAAATTAATTGGATCTGCCCCTT 58.007 37.500 0.39 0.00 34.97 3.95
2901 2967 5.619132 CAAAATTAATTGGATCTGCCCCT 57.381 39.130 0.39 0.00 34.97 4.79
2915 2981 9.993454 TTGACATGATTTGATGACCAAAATTAA 57.007 25.926 0.00 0.00 46.64 1.40
2917 2983 9.509956 AATTGACATGATTTGATGACCAAAATT 57.490 25.926 0.00 0.00 46.64 1.82
2918 2984 9.158233 GAATTGACATGATTTGATGACCAAAAT 57.842 29.630 0.00 0.00 46.64 1.82
2919 2985 8.148999 TGAATTGACATGATTTGATGACCAAAA 58.851 29.630 0.00 0.00 46.64 2.44
2921 2987 7.229581 TGAATTGACATGATTTGATGACCAA 57.770 32.000 0.00 0.00 0.00 3.67
2922 2988 6.837471 TGAATTGACATGATTTGATGACCA 57.163 33.333 0.00 0.00 0.00 4.02
2923 2989 6.252015 CGTTGAATTGACATGATTTGATGACC 59.748 38.462 0.00 0.00 0.00 4.02
2924 2990 7.007725 GTCGTTGAATTGACATGATTTGATGAC 59.992 37.037 0.00 0.32 35.20 3.06
2925 2991 7.022979 GTCGTTGAATTGACATGATTTGATGA 58.977 34.615 0.00 0.00 35.20 2.92
2926 2992 6.252015 GGTCGTTGAATTGACATGATTTGATG 59.748 38.462 0.00 0.00 36.83 3.07
2927 2993 6.151648 AGGTCGTTGAATTGACATGATTTGAT 59.848 34.615 0.00 0.00 36.83 2.57
2928 2994 5.473162 AGGTCGTTGAATTGACATGATTTGA 59.527 36.000 0.00 0.00 36.83 2.69
2929 2995 5.702865 AGGTCGTTGAATTGACATGATTTG 58.297 37.500 0.00 0.00 36.83 2.32
2930 2996 5.964958 AGGTCGTTGAATTGACATGATTT 57.035 34.783 0.00 0.00 36.83 2.17
2931 2997 6.313905 GTCTAGGTCGTTGAATTGACATGATT 59.686 38.462 0.00 0.00 36.83 2.57
2932 2998 5.812642 GTCTAGGTCGTTGAATTGACATGAT 59.187 40.000 0.00 0.00 36.83 2.45
2933 2999 5.047306 AGTCTAGGTCGTTGAATTGACATGA 60.047 40.000 0.00 0.00 36.83 3.07
2934 3000 5.062683 CAGTCTAGGTCGTTGAATTGACATG 59.937 44.000 0.00 0.00 36.83 3.21
2935 3001 5.171476 CAGTCTAGGTCGTTGAATTGACAT 58.829 41.667 3.54 0.00 36.83 3.06
2936 3002 4.038763 ACAGTCTAGGTCGTTGAATTGACA 59.961 41.667 3.54 0.00 36.83 3.58
2937 3003 4.386049 CACAGTCTAGGTCGTTGAATTGAC 59.614 45.833 0.00 0.00 0.00 3.18
2938 3004 4.038763 ACACAGTCTAGGTCGTTGAATTGA 59.961 41.667 0.00 0.00 0.00 2.57
2939 3005 4.307432 ACACAGTCTAGGTCGTTGAATTG 58.693 43.478 0.00 0.00 0.00 2.32
2940 3006 4.038763 TGACACAGTCTAGGTCGTTGAATT 59.961 41.667 0.00 0.00 34.32 2.17
2941 3007 3.572682 TGACACAGTCTAGGTCGTTGAAT 59.427 43.478 0.00 0.00 34.32 2.57
2942 3008 2.953648 TGACACAGTCTAGGTCGTTGAA 59.046 45.455 0.00 0.00 34.32 2.69
2943 3009 2.578786 TGACACAGTCTAGGTCGTTGA 58.421 47.619 0.00 0.00 34.32 3.18
2944 3010 3.364889 TTGACACAGTCTAGGTCGTTG 57.635 47.619 0.00 0.00 34.32 4.10
2945 3011 3.321111 ACATTGACACAGTCTAGGTCGTT 59.679 43.478 0.00 0.00 27.92 3.85
2946 3012 2.891580 ACATTGACACAGTCTAGGTCGT 59.108 45.455 0.00 0.00 27.92 4.34
2947 3013 3.502920 GACATTGACACAGTCTAGGTCG 58.497 50.000 9.70 0.00 38.62 4.79
2948 3014 3.190744 TCGACATTGACACAGTCTAGGTC 59.809 47.826 13.51 13.51 42.24 3.85
2949 3015 3.154710 TCGACATTGACACAGTCTAGGT 58.845 45.455 0.00 0.00 35.43 3.08
2950 3016 3.763902 CTCGACATTGACACAGTCTAGG 58.236 50.000 0.00 0.00 33.15 3.02
2951 3017 3.175152 GCTCGACATTGACACAGTCTAG 58.825 50.000 0.00 4.87 33.15 2.43
2952 3018 2.414161 CGCTCGACATTGACACAGTCTA 60.414 50.000 0.00 0.00 33.15 2.59
2953 3019 1.667177 CGCTCGACATTGACACAGTCT 60.667 52.381 0.00 0.00 33.15 3.24
2954 3020 0.710567 CGCTCGACATTGACACAGTC 59.289 55.000 0.00 0.00 0.00 3.51
2955 3021 1.284982 GCGCTCGACATTGACACAGT 61.285 55.000 0.00 0.00 0.00 3.55
2956 3022 1.010935 AGCGCTCGACATTGACACAG 61.011 55.000 2.64 0.00 0.00 3.66
2957 3023 1.006220 AGCGCTCGACATTGACACA 60.006 52.632 2.64 0.00 0.00 3.72
2958 3024 1.008875 TGAGCGCTCGACATTGACAC 61.009 55.000 30.75 5.13 0.00 3.67
2959 3025 0.319469 TTGAGCGCTCGACATTGACA 60.319 50.000 30.75 9.27 0.00 3.58
2960 3026 0.093705 GTTGAGCGCTCGACATTGAC 59.906 55.000 40.41 20.76 42.27 3.18
2961 3027 0.319469 TGTTGAGCGCTCGACATTGA 60.319 50.000 42.95 27.81 46.09 2.57
2962 3028 2.153039 TGTTGAGCGCTCGACATTG 58.847 52.632 42.95 0.00 46.09 2.82
2963 3029 4.673403 TGTTGAGCGCTCGACATT 57.327 50.000 42.95 9.77 46.09 2.71
2966 3032 0.512952 AAACATGTTGAGCGCTCGAC 59.487 50.000 39.44 39.44 42.86 4.20
2967 3033 1.992667 CTAAACATGTTGAGCGCTCGA 59.007 47.619 30.75 27.40 0.00 4.04
2968 3034 1.527793 GCTAAACATGTTGAGCGCTCG 60.528 52.381 28.15 18.98 37.32 5.03
2969 3035 2.165282 GCTAAACATGTTGAGCGCTC 57.835 50.000 28.15 30.42 37.32 5.03
2973 3039 1.069296 TGCACGCTAAACATGTTGAGC 60.069 47.619 30.88 30.88 42.40 4.26
2974 3040 2.224079 ACTGCACGCTAAACATGTTGAG 59.776 45.455 17.57 17.57 0.00 3.02
2975 3041 2.217750 ACTGCACGCTAAACATGTTGA 58.782 42.857 12.82 3.11 0.00 3.18
2976 3042 2.686558 ACTGCACGCTAAACATGTTG 57.313 45.000 12.82 1.29 0.00 3.33
2977 3043 4.822036 TTAACTGCACGCTAAACATGTT 57.178 36.364 4.92 4.92 0.00 2.71
2978 3044 5.371115 AATTAACTGCACGCTAAACATGT 57.629 34.783 0.00 0.00 0.00 3.21
2979 3045 5.855925 TGAAATTAACTGCACGCTAAACATG 59.144 36.000 0.00 0.00 0.00 3.21
2980 3046 6.007936 TGAAATTAACTGCACGCTAAACAT 57.992 33.333 0.00 0.00 0.00 2.71
2981 3047 5.425577 TGAAATTAACTGCACGCTAAACA 57.574 34.783 0.00 0.00 0.00 2.83
2982 3048 5.856455 ACATGAAATTAACTGCACGCTAAAC 59.144 36.000 0.00 0.00 0.00 2.01
2983 3049 6.007936 ACATGAAATTAACTGCACGCTAAA 57.992 33.333 0.00 0.00 0.00 1.85
2984 3050 5.180304 TGACATGAAATTAACTGCACGCTAA 59.820 36.000 0.00 0.00 0.00 3.09
2985 3051 4.693095 TGACATGAAATTAACTGCACGCTA 59.307 37.500 0.00 0.00 0.00 4.26
2986 3052 3.501828 TGACATGAAATTAACTGCACGCT 59.498 39.130 0.00 0.00 0.00 5.07
2987 3053 3.820689 TGACATGAAATTAACTGCACGC 58.179 40.909 0.00 0.00 0.00 5.34
2988 3054 6.932901 ATTTGACATGAAATTAACTGCACG 57.067 33.333 0.00 0.00 0.00 5.34
3028 3094 8.319146 CCGGTTGGAGTATATATTTGGAGTATT 58.681 37.037 0.00 0.00 37.49 1.89
3029 3095 7.580882 GCCGGTTGGAGTATATATTTGGAGTAT 60.581 40.741 1.90 0.00 37.49 2.12
3030 3096 6.295462 GCCGGTTGGAGTATATATTTGGAGTA 60.295 42.308 1.90 0.00 37.49 2.59
3031 3097 5.512576 GCCGGTTGGAGTATATATTTGGAGT 60.513 44.000 1.90 0.00 37.49 3.85
3032 3098 4.935808 GCCGGTTGGAGTATATATTTGGAG 59.064 45.833 1.90 0.00 37.49 3.86
3033 3099 4.263156 GGCCGGTTGGAGTATATATTTGGA 60.263 45.833 1.90 0.00 37.49 3.53
3034 3100 4.007659 GGCCGGTTGGAGTATATATTTGG 58.992 47.826 1.90 0.00 37.49 3.28
3035 3101 4.695455 CAGGCCGGTTGGAGTATATATTTG 59.305 45.833 1.90 0.00 37.49 2.32
3036 3102 4.349930 ACAGGCCGGTTGGAGTATATATTT 59.650 41.667 1.28 0.00 37.49 1.40
3037 3103 3.908103 ACAGGCCGGTTGGAGTATATATT 59.092 43.478 1.28 0.00 37.49 1.28
3038 3104 3.517612 ACAGGCCGGTTGGAGTATATAT 58.482 45.455 1.28 0.00 37.49 0.86
3039 3105 2.966915 ACAGGCCGGTTGGAGTATATA 58.033 47.619 1.28 0.00 37.49 0.86
3040 3106 1.802553 ACAGGCCGGTTGGAGTATAT 58.197 50.000 1.28 0.00 37.49 0.86
3041 3107 1.208535 CAACAGGCCGGTTGGAGTATA 59.791 52.381 33.44 0.00 43.39 1.47
3042 3108 0.035439 CAACAGGCCGGTTGGAGTAT 60.035 55.000 33.44 4.58 43.39 2.12
3043 3109 1.122632 TCAACAGGCCGGTTGGAGTA 61.123 55.000 37.51 22.23 46.29 2.59
3044 3110 1.990160 TTCAACAGGCCGGTTGGAGT 61.990 55.000 37.51 9.99 46.29 3.85
3045 3111 0.609131 ATTCAACAGGCCGGTTGGAG 60.609 55.000 37.51 20.31 46.29 3.86
3046 3112 0.693622 TATTCAACAGGCCGGTTGGA 59.306 50.000 37.51 33.56 46.29 3.53
3047 3113 1.762708 ATATTCAACAGGCCGGTTGG 58.237 50.000 37.51 23.89 46.29 3.77
3049 3115 4.338118 CACAATATATTCAACAGGCCGGTT 59.662 41.667 16.16 16.16 0.00 4.44
3050 3116 3.882888 CACAATATATTCAACAGGCCGGT 59.117 43.478 1.28 1.28 0.00 5.28
3051 3117 3.882888 ACACAATATATTCAACAGGCCGG 59.117 43.478 0.00 0.00 0.00 6.13
3052 3118 5.525745 TGTACACAATATATTCAACAGGCCG 59.474 40.000 0.00 0.00 0.00 6.13
3053 3119 6.935741 TGTACACAATATATTCAACAGGCC 57.064 37.500 0.00 0.00 0.00 5.19
3054 3120 7.930217 ACATGTACACAATATATTCAACAGGC 58.070 34.615 0.00 0.00 0.00 4.85
3085 3151 2.616458 GGAGGTGGGCCCAAGACAT 61.616 63.158 30.64 12.94 34.66 3.06
3106 3172 6.536582 CCACAACCTCAACTATACAGATGAAG 59.463 42.308 0.00 0.00 33.64 3.02
3195 3262 6.240549 ACCATGTGGAAGACTAGAATAAGG 57.759 41.667 5.96 0.00 38.94 2.69
3197 3264 8.783660 AGATACCATGTGGAAGACTAGAATAA 57.216 34.615 5.96 0.00 38.94 1.40
3211 3279 6.870965 GGAACTTCTGCTATAGATACCATGTG 59.129 42.308 3.21 0.00 34.80 3.21
3225 3293 3.028130 GCTAGGTCTAGGAACTTCTGCT 58.972 50.000 7.08 0.00 41.75 4.24
3395 3524 4.415332 GGTGAAGAGCGACGCGGA 62.415 66.667 15.18 0.00 0.00 5.54
3426 3579 0.106519 GTGGAGTAGGCGGGTAGGTA 60.107 60.000 0.00 0.00 0.00 3.08
3517 3736 1.410004 TGGATATGGTGGAGGACGAC 58.590 55.000 0.00 0.00 0.00 4.34
3520 3742 1.143073 GGGTTGGATATGGTGGAGGAC 59.857 57.143 0.00 0.00 0.00 3.85
3613 3835 1.721664 CGGAGTAGGACGCGATGGAA 61.722 60.000 15.93 0.00 0.00 3.53
3678 3903 3.680620 ATGGTGCCATCGACGTGGG 62.681 63.158 15.24 9.97 39.73 4.61
3795 4020 0.537188 GTCGTCATCATCCACCACCT 59.463 55.000 0.00 0.00 0.00 4.00
3825 4050 1.021968 GTTGAGCTTGGTCCAAACGT 58.978 50.000 5.64 0.00 0.00 3.99
3829 4054 1.896660 GCCGTTGAGCTTGGTCCAA 60.897 57.895 3.76 3.76 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.