Multiple sequence alignment - TraesCS7B01G228200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G228200 chr7B 100.000 2804 0 0 1 2804 428484940 428482137 0.000000e+00 5179.0
1 TraesCS7B01G228200 chr7D 93.885 2551 80 25 119 2643 414088645 414086145 0.000000e+00 3777.0
2 TraesCS7B01G228200 chr7D 98.958 96 1 0 1 96 414088800 414088705 3.710000e-39 172.0
3 TraesCS7B01G228200 chr7D 95.181 83 4 0 2722 2804 414085983 414085901 6.300000e-27 132.0
4 TraesCS7B01G228200 chr7A 93.234 2010 78 20 118 2098 475964291 475962311 0.000000e+00 2905.0
5 TraesCS7B01G228200 chr7A 92.683 451 21 5 2082 2530 475962254 475961814 8.470000e-180 640.0
6 TraesCS7B01G228200 chr7A 97.917 96 2 0 1 96 475964447 475964352 1.730000e-37 167.0
7 TraesCS7B01G228200 chr7A 97.590 83 2 0 2722 2804 475961369 475961287 2.910000e-30 143.0
8 TraesCS7B01G228200 chr7A 82.075 106 9 4 2542 2647 475961698 475961603 6.440000e-12 82.4
9 TraesCS7B01G228200 chr7A 100.000 28 0 0 87 114 475964353 475964326 5.000000e-03 52.8
10 TraesCS7B01G228200 chr2B 85.437 206 27 2 1498 1700 785271223 785271428 7.870000e-51 211.0
11 TraesCS7B01G228200 chr2B 82.326 215 26 6 1498 1700 785278580 785278794 2.870000e-40 176.0
12 TraesCS7B01G228200 chr2A 81.905 210 26 5 1503 1700 775248825 775248616 1.730000e-37 167.0
13 TraesCS7B01G228200 chr2A 81.905 210 26 5 1503 1700 775272171 775271962 1.730000e-37 167.0
14 TraesCS7B01G228200 chr2D 80.556 216 27 6 1500 1700 649565374 649565589 4.840000e-33 152.0
15 TraesCS7B01G228200 chr3B 91.509 106 5 1 12 113 558508836 558508941 2.910000e-30 143.0
16 TraesCS7B01G228200 chr5A 90.291 103 6 1 12 110 708162200 708162302 6.300000e-27 132.0
17 TraesCS7B01G228200 chr4D 76.442 208 31 13 1530 1728 95289837 95289639 2.300000e-16 97.1
18 TraesCS7B01G228200 chr4B 75.862 203 41 8 1530 1728 134825113 134824915 2.300000e-16 97.1
19 TraesCS7B01G228200 chr4A 76.243 181 30 10 1530 1700 484672693 484672870 1.790000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G228200 chr7B 428482137 428484940 2803 True 5179.000000 5179 100.0000 1 2804 1 chr7B.!!$R1 2803
1 TraesCS7B01G228200 chr7D 414085901 414088800 2899 True 1360.333333 3777 96.0080 1 2804 3 chr7D.!!$R1 2803
2 TraesCS7B01G228200 chr7A 475961287 475964447 3160 True 665.033333 2905 93.9165 1 2804 6 chr7A.!!$R1 2803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 123 0.179015 AGAGCTAGCTAGGCGCACTA 60.179 55.0 19.38 7.61 42.61 2.74 F
415 468 0.179032 AATTGGATGGACGGCGCATA 60.179 50.0 10.83 0.00 0.00 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 1670 0.393537 CCATCCAGCACCAGTCCTTC 60.394 60.0 0.00 0.0 0.0 3.46 R
2151 2308 0.517316 ATTCTCGCGTTCCAAACAGC 59.483 50.0 5.77 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 123 0.179015 AGAGCTAGCTAGGCGCACTA 60.179 55.000 19.38 7.61 42.61 2.74
127 170 5.447624 AGGCGCACTAGTTAAAACAATTT 57.552 34.783 10.83 0.00 0.00 1.82
135 178 6.577427 CACTAGTTAAAACAATTTGAGGACGC 59.423 38.462 2.79 0.00 0.00 5.19
141 184 2.427506 ACAATTTGAGGACGCTTCTCC 58.572 47.619 2.79 0.00 0.00 3.71
163 206 5.903010 TCCCTTGTCTGCACCTAATTATCTA 59.097 40.000 0.00 0.00 0.00 1.98
164 207 6.042093 TCCCTTGTCTGCACCTAATTATCTAG 59.958 42.308 0.00 0.00 0.00 2.43
165 208 6.042093 CCCTTGTCTGCACCTAATTATCTAGA 59.958 42.308 0.00 0.00 0.00 2.43
166 209 7.151308 CCTTGTCTGCACCTAATTATCTAGAG 58.849 42.308 0.00 0.00 0.00 2.43
308 359 2.161855 CAGCCTGCAGATTAAACCACA 58.838 47.619 17.39 0.00 0.00 4.17
414 467 1.037030 AAATTGGATGGACGGCGCAT 61.037 50.000 10.83 2.58 0.00 4.73
415 468 0.179032 AATTGGATGGACGGCGCATA 60.179 50.000 10.83 0.00 0.00 3.14
528 582 3.372206 GCATGTGTCTTGTAGCCTTGTAG 59.628 47.826 0.00 0.00 0.00 2.74
791 857 4.876125 TGTACTGATATGCTGCTAGCTTC 58.124 43.478 17.23 8.02 42.97 3.86
823 894 2.361757 TGCCAATATGTGCTATGCAACC 59.638 45.455 0.00 0.00 41.47 3.77
824 895 2.288395 GCCAATATGTGCTATGCAACCC 60.288 50.000 0.00 0.00 41.47 4.11
825 896 3.225104 CCAATATGTGCTATGCAACCCT 58.775 45.455 0.00 0.00 41.47 4.34
964 1038 2.146342 CTCTTGTGCATCGTCCTGTTT 58.854 47.619 0.00 0.00 0.00 2.83
1146 1220 3.866379 ATGGCCGTCCTGCAAGCAA 62.866 57.895 0.00 0.00 0.00 3.91
1218 1292 2.000447 GCGTACAAGACCATGAACTCC 59.000 52.381 0.00 0.00 0.00 3.85
1236 1310 2.711922 CGCCTACTTGCCCGACTCT 61.712 63.158 0.00 0.00 0.00 3.24
1273 1347 2.815647 CCAACTCCTTCGCCTCGC 60.816 66.667 0.00 0.00 0.00 5.03
1413 1487 1.074471 GGCCACCTCCTCCTCCATA 60.074 63.158 0.00 0.00 0.00 2.74
1441 1515 1.583477 GCCAAGCTGAAGGTGAAGC 59.417 57.895 0.00 0.00 39.82 3.86
1445 1519 1.884579 CAAGCTGAAGGTGAAGCACAT 59.115 47.619 0.00 0.00 42.06 3.21
1460 1534 1.076533 CACATCGACACTACCACCGC 61.077 60.000 0.00 0.00 0.00 5.68
1474 1548 4.393155 CCGCTACCACCTGCTGCA 62.393 66.667 0.88 0.88 0.00 4.41
1475 1549 2.124983 CGCTACCACCTGCTGCAT 60.125 61.111 1.31 0.00 0.00 3.96
1596 1670 2.086832 ATGGTAATGAGCCATGGCGTG 61.087 52.381 30.50 0.00 44.36 5.34
1757 1831 2.743928 CAGCACCAACCGCTCCTC 60.744 66.667 0.00 0.00 37.72 3.71
1758 1832 4.021925 AGCACCAACCGCTCCTCC 62.022 66.667 0.00 0.00 33.35 4.30
1809 1883 2.236395 GGAGGAAGAAGGATGAACCGAA 59.764 50.000 0.00 0.00 44.74 4.30
1877 1951 0.093705 GATTCGCGTCAAGTGCTGTC 59.906 55.000 5.77 0.00 0.00 3.51
1994 2074 3.327757 TGATTGCCTGTCAGTTAACTCCT 59.672 43.478 4.77 0.00 0.00 3.69
2066 2150 8.387354 TGAGTACTATATTTGAATTTGTGTGCG 58.613 33.333 0.00 0.00 0.00 5.34
2149 2306 0.179176 GCGTGTGTGTTGTCTGCAAA 60.179 50.000 0.00 0.00 36.22 3.68
2150 2307 1.730772 GCGTGTGTGTTGTCTGCAAAA 60.731 47.619 0.00 0.00 36.22 2.44
2151 2308 2.176369 CGTGTGTGTTGTCTGCAAAAG 58.824 47.619 0.00 0.00 36.22 2.27
2152 2309 1.919918 GTGTGTGTTGTCTGCAAAAGC 59.080 47.619 0.00 0.00 36.22 3.51
2160 2317 2.098614 TGTCTGCAAAAGCTGTTTGGA 58.901 42.857 17.37 14.93 0.00 3.53
2199 2356 5.592688 ACCGAAATTTGGTCTTCTTTCTCAA 59.407 36.000 0.00 0.00 33.35 3.02
2213 2370 8.237267 TCTTCTTTCTCAAAAACAGTTCAGTTC 58.763 33.333 0.00 0.00 0.00 3.01
2240 2398 7.256083 CCACAAGAAATGAAGAAGGGAAATCTT 60.256 37.037 0.00 0.00 39.76 2.40
2285 2443 2.979813 GTGATTGTGTGCATTCCGTTTC 59.020 45.455 0.00 0.00 0.00 2.78
2375 2533 2.435586 GCTCTGCCTGCGTGATGT 60.436 61.111 0.00 0.00 0.00 3.06
2376 2534 1.153568 GCTCTGCCTGCGTGATGTA 60.154 57.895 0.00 0.00 0.00 2.29
2377 2535 0.531532 GCTCTGCCTGCGTGATGTAT 60.532 55.000 0.00 0.00 0.00 2.29
2378 2536 1.945387 CTCTGCCTGCGTGATGTATT 58.055 50.000 0.00 0.00 0.00 1.89
2379 2537 1.596260 CTCTGCCTGCGTGATGTATTG 59.404 52.381 0.00 0.00 0.00 1.90
2380 2538 1.066215 TCTGCCTGCGTGATGTATTGT 60.066 47.619 0.00 0.00 0.00 2.71
2381 2539 1.328680 CTGCCTGCGTGATGTATTGTC 59.671 52.381 0.00 0.00 0.00 3.18
2382 2540 1.066215 TGCCTGCGTGATGTATTGTCT 60.066 47.619 0.00 0.00 0.00 3.41
2516 2677 1.586422 GTCATCATGTGGTGGATCGG 58.414 55.000 0.00 0.00 0.00 4.18
2564 2829 3.126831 AGTTGCTTCTTTCTCAGACACG 58.873 45.455 0.00 0.00 0.00 4.49
2571 2836 5.278022 GCTTCTTTCTCAGACACGGAATTTT 60.278 40.000 0.00 0.00 0.00 1.82
2572 2837 5.673337 TCTTTCTCAGACACGGAATTTTG 57.327 39.130 0.00 0.00 0.00 2.44
2612 2877 0.461548 CATGCTGCTCGGAGTAGGAA 59.538 55.000 19.83 0.00 31.54 3.36
2613 2878 1.069823 CATGCTGCTCGGAGTAGGAAT 59.930 52.381 19.83 7.39 31.54 3.01
2614 2879 0.461548 TGCTGCTCGGAGTAGGAATG 59.538 55.000 22.03 0.61 0.00 2.67
2683 3112 2.551459 GTGTAATCCTCCTCATGCATGC 59.449 50.000 22.25 11.82 0.00 4.06
2684 3113 2.173143 TGTAATCCTCCTCATGCATGCA 59.827 45.455 25.04 25.04 0.00 3.96
2699 3128 5.195001 TGCATGCACGATAACTGATACTA 57.805 39.130 18.46 0.00 0.00 1.82
2701 3130 4.088638 GCATGCACGATAACTGATACTACG 59.911 45.833 14.21 0.00 0.00 3.51
2702 3131 5.449304 CATGCACGATAACTGATACTACGA 58.551 41.667 0.00 0.00 0.00 3.43
2703 3132 4.840911 TGCACGATAACTGATACTACGAC 58.159 43.478 0.00 0.00 0.00 4.34
2704 3133 4.333372 TGCACGATAACTGATACTACGACA 59.667 41.667 0.00 0.00 0.00 4.35
2705 3134 5.008316 TGCACGATAACTGATACTACGACAT 59.992 40.000 0.00 0.00 0.00 3.06
2706 3135 6.203338 TGCACGATAACTGATACTACGACATA 59.797 38.462 0.00 0.00 0.00 2.29
2707 3136 6.519078 GCACGATAACTGATACTACGACATAC 59.481 42.308 0.00 0.00 0.00 2.39
2709 3138 7.951030 CACGATAACTGATACTACGACATACTC 59.049 40.741 0.00 0.00 0.00 2.59
2710 3139 7.117523 ACGATAACTGATACTACGACATACTCC 59.882 40.741 0.00 0.00 0.00 3.85
2711 3140 7.412781 CGATAACTGATACTACGACATACTCCC 60.413 44.444 0.00 0.00 0.00 4.30
2712 3141 5.307544 ACTGATACTACGACATACTCCCT 57.692 43.478 0.00 0.00 0.00 4.20
2713 3142 5.064558 ACTGATACTACGACATACTCCCTG 58.935 45.833 0.00 0.00 0.00 4.45
2714 3143 4.395625 TGATACTACGACATACTCCCTGG 58.604 47.826 0.00 0.00 0.00 4.45
2715 3144 2.068834 ACTACGACATACTCCCTGGG 57.931 55.000 6.33 6.33 0.00 4.45
2716 3145 1.567649 ACTACGACATACTCCCTGGGA 59.432 52.381 16.13 16.13 0.00 4.37
2730 3162 6.347859 CTCCCTGGGAGTAGTACAATAATC 57.652 45.833 30.91 0.00 44.25 1.75
2737 3169 7.279615 TGGGAGTAGTACAATAATCAACATGG 58.720 38.462 2.52 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 123 5.767816 AGCGTCCTCAAATTGTTTTAACT 57.232 34.783 0.00 0.00 0.00 2.24
115 124 6.206498 AGAAGCGTCCTCAAATTGTTTTAAC 58.794 36.000 0.00 0.00 0.00 2.01
116 125 6.385649 AGAAGCGTCCTCAAATTGTTTTAA 57.614 33.333 0.00 0.00 0.00 1.52
127 170 0.832135 ACAAGGGAGAAGCGTCCTCA 60.832 55.000 0.00 0.00 36.75 3.86
135 178 0.689623 AGGTGCAGACAAGGGAGAAG 59.310 55.000 0.00 0.00 0.00 2.85
141 184 7.014711 TCTCTAGATAATTAGGTGCAGACAAGG 59.985 40.741 0.00 0.00 0.00 3.61
163 206 3.776969 TGCAATAAGGTCACAGGATCTCT 59.223 43.478 0.00 0.00 31.72 3.10
164 207 3.873952 GTGCAATAAGGTCACAGGATCTC 59.126 47.826 0.00 0.00 31.72 2.75
165 208 3.370953 GGTGCAATAAGGTCACAGGATCT 60.371 47.826 0.00 0.00 35.47 2.75
166 209 2.945668 GGTGCAATAAGGTCACAGGATC 59.054 50.000 0.00 0.00 32.69 3.36
180 223 5.011943 ACCTGTTGTAATCAAATGGTGCAAT 59.988 36.000 0.00 0.00 38.76 3.56
493 546 2.612672 GACACATGCATGATCAGGAGTG 59.387 50.000 32.75 19.09 0.00 3.51
497 551 3.014623 ACAAGACACATGCATGATCAGG 58.985 45.455 32.75 22.70 0.00 3.86
626 686 1.680735 GTGGTGGAGTGCAATTTGTGA 59.319 47.619 0.00 0.00 0.00 3.58
747 813 2.163211 GGACAGGAGCAATCAAAAGAGC 59.837 50.000 0.00 0.00 0.00 4.09
823 894 2.865492 GGCTTTTGCTCAGAGGAGG 58.135 57.895 0.00 0.00 46.54 4.30
964 1038 6.440010 AGTCTGATCTCAAGGAGAAGAAATCA 59.560 38.462 0.00 0.00 42.27 2.57
1218 1292 2.202756 GAGTCGGGCAAGTAGGCG 60.203 66.667 0.00 0.00 45.36 5.52
1273 1347 2.041115 TGGAGAGGCTGTCGTCGAG 61.041 63.158 5.49 0.00 32.68 4.04
1413 1487 2.992114 AGCTTGGCCTCGTCGAGT 60.992 61.111 20.37 0.00 0.00 4.18
1441 1515 1.076533 GCGGTGGTAGTGTCGATGTG 61.077 60.000 0.00 0.00 0.00 3.21
1445 1519 1.308069 GGTAGCGGTGGTAGTGTCGA 61.308 60.000 0.00 0.00 0.00 4.20
1460 1534 3.076104 CTGATGCAGCAGGTGGTAG 57.924 57.895 24.22 0.00 32.26 3.18
1474 1548 1.488705 TTGTCCACCTTCCCGCTGAT 61.489 55.000 0.00 0.00 0.00 2.90
1475 1549 2.111999 CTTGTCCACCTTCCCGCTGA 62.112 60.000 0.00 0.00 0.00 4.26
1518 1592 1.323271 ACGAGTCCATGGTCATCGCT 61.323 55.000 25.31 15.26 36.89 4.93
1522 1596 1.135083 GTTCGACGAGTCCATGGTCAT 60.135 52.381 12.58 0.00 36.50 3.06
1596 1670 0.393537 CCATCCAGCACCAGTCCTTC 60.394 60.000 0.00 0.00 0.00 3.46
1757 1831 3.382803 CTGCCGCTGAAGGAGGAGG 62.383 68.421 0.00 0.00 37.02 4.30
1758 1832 2.186384 CTGCCGCTGAAGGAGGAG 59.814 66.667 0.00 0.00 37.02 3.69
1840 1914 2.045926 ATGGCAGCAAGGGACGAC 60.046 61.111 0.00 0.00 0.00 4.34
1841 1915 1.913951 ATCATGGCAGCAAGGGACGA 61.914 55.000 0.00 0.00 0.00 4.20
1842 1916 1.033746 AATCATGGCAGCAAGGGACG 61.034 55.000 0.00 0.00 0.00 4.79
1934 2008 6.183360 CCAGTAGCTTCGCAAAAGATAAATGA 60.183 38.462 0.00 0.00 0.00 2.57
2066 2150 2.094390 TCATACGTAATATCCGGGCTGC 60.094 50.000 0.00 0.00 0.00 5.25
2149 2306 0.531974 TCTCGCGTTCCAAACAGCTT 60.532 50.000 5.77 0.00 0.00 3.74
2150 2307 0.531974 TTCTCGCGTTCCAAACAGCT 60.532 50.000 5.77 0.00 0.00 4.24
2151 2308 0.517316 ATTCTCGCGTTCCAAACAGC 59.483 50.000 5.77 0.00 0.00 4.40
2152 2309 2.969443 AATTCTCGCGTTCCAAACAG 57.031 45.000 5.77 0.00 0.00 3.16
2160 2317 1.504359 TCGGTGAAAATTCTCGCGTT 58.496 45.000 5.77 0.00 0.00 4.84
2199 2356 4.340617 TCTTGTGGGAACTGAACTGTTTT 58.659 39.130 0.00 0.00 0.00 2.43
2213 2370 3.766545 TCCCTTCTTCATTTCTTGTGGG 58.233 45.455 0.00 0.00 0.00 4.61
2240 2398 8.664798 CACATATTTAGATCCGTCTGAAACAAA 58.335 33.333 0.00 0.00 34.17 2.83
2285 2443 3.876320 CACACACAAAAATGGAAAAGGGG 59.124 43.478 0.00 0.00 0.00 4.79
2375 2533 8.534496 CCATGTATATGATGTGGAGAGACAATA 58.466 37.037 0.25 0.00 36.36 1.90
2376 2534 7.236225 TCCATGTATATGATGTGGAGAGACAAT 59.764 37.037 0.25 0.00 36.36 2.71
2377 2535 6.554605 TCCATGTATATGATGTGGAGAGACAA 59.445 38.462 0.25 0.00 36.36 3.18
2378 2536 6.077322 TCCATGTATATGATGTGGAGAGACA 58.923 40.000 0.25 0.00 36.36 3.41
2379 2537 6.596309 TCCATGTATATGATGTGGAGAGAC 57.404 41.667 0.25 0.00 36.36 3.36
2380 2538 6.155737 CCATCCATGTATATGATGTGGAGAGA 59.844 42.308 0.25 0.00 41.81 3.10
2381 2539 6.070366 ACCATCCATGTATATGATGTGGAGAG 60.070 42.308 17.89 2.45 41.81 3.20
2382 2540 5.786975 ACCATCCATGTATATGATGTGGAGA 59.213 40.000 17.89 1.44 41.81 3.71
2564 2829 1.268625 GGGACGTGTGACCAAAATTCC 59.731 52.381 0.00 0.00 0.00 3.01
2612 2877 1.959985 CTGCTCTCGTGGATCCTACAT 59.040 52.381 14.23 0.00 0.00 2.29
2613 2878 1.064685 TCTGCTCTCGTGGATCCTACA 60.065 52.381 14.23 0.00 0.00 2.74
2614 2879 1.606668 CTCTGCTCTCGTGGATCCTAC 59.393 57.143 14.23 8.66 0.00 3.18
2659 3088 5.802465 CATGCATGAGGAGGATTACACTAT 58.198 41.667 22.59 0.00 0.00 2.12
2661 3090 3.746751 GCATGCATGAGGAGGATTACACT 60.747 47.826 30.64 0.00 0.00 3.55
2673 3102 2.867975 TCAGTTATCGTGCATGCATGAG 59.132 45.455 37.57 26.83 44.02 2.90
2674 3103 2.903798 TCAGTTATCGTGCATGCATGA 58.096 42.857 37.37 37.37 44.76 3.07
2675 3104 3.891056 ATCAGTTATCGTGCATGCATG 57.109 42.857 30.20 30.20 0.00 4.06
2677 3106 4.058721 AGTATCAGTTATCGTGCATGCA 57.941 40.909 18.46 18.46 0.00 3.96
2683 3112 7.794880 AGTATGTCGTAGTATCAGTTATCGTG 58.205 38.462 0.00 0.00 0.00 4.35
2684 3113 7.117523 GGAGTATGTCGTAGTATCAGTTATCGT 59.882 40.741 0.00 0.00 0.00 3.73
2699 3128 3.209091 CTCCCAGGGAGTATGTCGT 57.791 57.895 26.30 0.00 44.25 4.34
2709 3138 6.126883 TGTTGATTATTGTACTACTCCCAGGG 60.127 42.308 0.00 0.00 0.00 4.45
2710 3139 6.884832 TGTTGATTATTGTACTACTCCCAGG 58.115 40.000 0.00 0.00 0.00 4.45
2711 3140 7.442364 CCATGTTGATTATTGTACTACTCCCAG 59.558 40.741 0.00 0.00 0.00 4.45
2712 3141 7.279615 CCATGTTGATTATTGTACTACTCCCA 58.720 38.462 0.00 0.00 0.00 4.37
2713 3142 6.710744 CCCATGTTGATTATTGTACTACTCCC 59.289 42.308 0.00 0.00 0.00 4.30
2714 3143 7.506114 TCCCATGTTGATTATTGTACTACTCC 58.494 38.462 0.00 0.00 0.00 3.85
2715 3144 8.958119 TTCCCATGTTGATTATTGTACTACTC 57.042 34.615 0.00 0.00 0.00 2.59
2716 3145 9.561069 GATTCCCATGTTGATTATTGTACTACT 57.439 33.333 0.00 0.00 0.00 2.57
2717 3146 8.495949 CGATTCCCATGTTGATTATTGTACTAC 58.504 37.037 0.00 0.00 0.00 2.73
2720 3149 7.352739 GTCGATTCCCATGTTGATTATTGTAC 58.647 38.462 0.00 0.00 0.00 2.90
2730 3162 1.732941 TTCGGTCGATTCCCATGTTG 58.267 50.000 0.00 0.00 0.00 3.33
2737 3169 3.390135 TGCAAGATATTCGGTCGATTCC 58.610 45.455 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.