Multiple sequence alignment - TraesCS7B01G224000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G224000 chr7B 100.000 1899 0 0 435 2333 423758224 423756326 0.000000e+00 3507
1 TraesCS7B01G224000 chr7B 96.450 169 5 1 2014 2182 588875746 588875579 6.350000e-71 278
2 TraesCS7B01G224000 chr7B 100.000 145 0 0 1 145 423758658 423758514 3.820000e-68 268
3 TraesCS7B01G224000 chr7D 93.174 835 43 7 903 1730 409453981 409453154 0.000000e+00 1214
4 TraesCS7B01G224000 chr7D 95.018 281 13 1 1736 2015 409453109 409452829 7.650000e-120 440
5 TraesCS7B01G224000 chr7D 82.051 390 32 20 528 914 409454369 409454015 4.870000e-77 298
6 TraesCS7B01G224000 chr7D 96.203 158 4 1 2176 2333 409452830 409452675 8.270000e-65 257
7 TraesCS7B01G224000 chr7A 95.253 653 30 1 1079 1730 469981671 469981019 0.000000e+00 1033
8 TraesCS7B01G224000 chr7A 91.815 281 13 3 1736 2015 469975997 469975726 1.310000e-102 383
9 TraesCS7B01G224000 chr7A 85.131 343 17 9 733 1047 469982002 469981666 1.040000e-83 320
10 TraesCS7B01G224000 chr7A 93.671 158 9 1 2176 2333 469975727 469975571 3.880000e-58 235
11 TraesCS7B01G224000 chr7A 84.906 212 9 11 528 738 469982161 469981972 2.370000e-45 193
12 TraesCS7B01G224000 chr6D 98.225 169 3 0 2011 2179 266773115 266773283 1.750000e-76 296
13 TraesCS7B01G224000 chr6D 93.923 181 10 1 2010 2189 392278573 392278753 2.950000e-69 272
14 TraesCS7B01G224000 chr5A 97.605 167 4 0 2011 2177 44602570 44602736 1.050000e-73 287
15 TraesCS7B01G224000 chr3B 97.076 171 4 1 2012 2181 52744108 52743938 1.050000e-73 287
16 TraesCS7B01G224000 chr3D 97.576 165 4 0 2014 2178 232559969 232559805 1.360000e-72 283
17 TraesCS7B01G224000 chr5D 94.505 182 10 0 2012 2193 198477553 198477372 4.910000e-72 281
18 TraesCS7B01G224000 chr4B 97.024 168 4 1 2011 2177 512755415 512755248 4.910000e-72 281
19 TraesCS7B01G224000 chr1B 97.006 167 5 0 2013 2179 323472322 323472488 4.910000e-72 281


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G224000 chr7B 423756326 423758658 2332 True 1887.500000 3507 100.0000 1 2333 2 chr7B.!!$R2 2332
1 TraesCS7B01G224000 chr7D 409452675 409454369 1694 True 552.250000 1214 91.6115 528 2333 4 chr7D.!!$R1 1805
2 TraesCS7B01G224000 chr7A 469981019 469982161 1142 True 515.333333 1033 88.4300 528 1730 3 chr7A.!!$R2 1202

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 870 0.03716 AGCACAGTGGCACATCATCA 59.963 50.0 21.41 0.0 44.52 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2161 2255 0.702902 TGTCTACTCCCTCCGTTCCT 59.297 55.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.911143 ATCCCCCACATCACGAGC 59.089 61.111 0.00 0.00 0.00 5.03
18 19 2.746375 ATCCCCCACATCACGAGCC 61.746 63.158 0.00 0.00 0.00 4.70
19 20 3.402681 CCCCCACATCACGAGCCT 61.403 66.667 0.00 0.00 0.00 4.58
20 21 2.187946 CCCCACATCACGAGCCTC 59.812 66.667 0.00 0.00 0.00 4.70
21 22 2.187946 CCCACATCACGAGCCTCC 59.812 66.667 0.00 0.00 0.00 4.30
22 23 2.202797 CCACATCACGAGCCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
23 24 2.887568 CACATCACGAGCCTCCGC 60.888 66.667 0.00 0.00 0.00 5.54
24 25 4.148825 ACATCACGAGCCTCCGCC 62.149 66.667 0.00 0.00 34.57 6.13
25 26 4.147449 CATCACGAGCCTCCGCCA 62.147 66.667 0.00 0.00 34.57 5.69
26 27 3.157252 ATCACGAGCCTCCGCCAT 61.157 61.111 0.00 0.00 34.57 4.40
27 28 3.451556 ATCACGAGCCTCCGCCATG 62.452 63.158 0.00 0.00 34.57 3.66
47 48 3.827898 GACGCCCGGAGACCTCAG 61.828 72.222 0.73 0.00 0.00 3.35
52 53 3.465403 CCGGAGACCTCAGGCCAG 61.465 72.222 5.01 0.00 38.07 4.85
53 54 2.681778 CGGAGACCTCAGGCCAGT 60.682 66.667 5.01 0.00 0.00 4.00
54 55 2.716017 CGGAGACCTCAGGCCAGTC 61.716 68.421 5.01 6.31 0.00 3.51
55 56 2.716017 GGAGACCTCAGGCCAGTCG 61.716 68.421 5.01 0.00 35.65 4.18
56 57 3.363844 GAGACCTCAGGCCAGTCGC 62.364 68.421 5.01 4.30 35.65 5.19
67 68 3.803082 CAGTCGCCGCCAATGGTG 61.803 66.667 5.73 5.73 40.98 4.17
74 75 3.202001 CGCCAATGGTGGGTAGCG 61.202 66.667 4.63 0.00 46.09 4.26
75 76 2.270850 GCCAATGGTGGGTAGCGA 59.729 61.111 0.00 0.00 46.09 4.93
76 77 1.152963 GCCAATGGTGGGTAGCGAT 60.153 57.895 0.00 0.00 46.09 4.58
77 78 0.107831 GCCAATGGTGGGTAGCGATA 59.892 55.000 0.00 0.00 46.09 2.92
78 79 1.878953 CCAATGGTGGGTAGCGATAC 58.121 55.000 1.22 1.22 41.77 2.24
79 80 1.542547 CCAATGGTGGGTAGCGATACC 60.543 57.143 21.67 21.67 41.77 2.73
80 81 1.140052 CAATGGTGGGTAGCGATACCA 59.860 52.381 29.52 13.86 46.25 3.25
81 82 1.048601 ATGGTGGGTAGCGATACCAG 58.951 55.000 29.52 0.00 45.49 4.00
82 83 1.046472 TGGTGGGTAGCGATACCAGG 61.046 60.000 29.52 0.00 41.83 4.45
83 84 0.757935 GGTGGGTAGCGATACCAGGA 60.758 60.000 29.52 11.39 41.83 3.86
84 85 1.339097 GTGGGTAGCGATACCAGGAT 58.661 55.000 29.52 0.00 41.83 3.24
85 86 1.272769 GTGGGTAGCGATACCAGGATC 59.727 57.143 29.52 13.43 41.83 3.36
90 91 2.657237 CGATACCAGGATCGCCCC 59.343 66.667 0.00 0.00 41.98 5.80
91 92 2.657237 GATACCAGGATCGCCCCG 59.343 66.667 0.00 0.00 34.66 5.73
92 93 2.122989 ATACCAGGATCGCCCCGT 60.123 61.111 0.00 0.00 34.66 5.28
93 94 0.896940 GATACCAGGATCGCCCCGTA 60.897 60.000 0.00 0.00 34.66 4.02
94 95 0.470456 ATACCAGGATCGCCCCGTAA 60.470 55.000 0.00 0.00 34.66 3.18
95 96 0.470456 TACCAGGATCGCCCCGTAAT 60.470 55.000 0.00 0.00 34.66 1.89
96 97 1.004918 CCAGGATCGCCCCGTAATC 60.005 63.158 0.00 0.00 34.66 1.75
97 98 1.745890 CAGGATCGCCCCGTAATCA 59.254 57.895 0.00 0.00 34.66 2.57
98 99 0.600255 CAGGATCGCCCCGTAATCAC 60.600 60.000 0.00 0.00 34.66 3.06
99 100 1.301479 GGATCGCCCCGTAATCACC 60.301 63.158 0.00 0.00 0.00 4.02
100 101 1.301479 GATCGCCCCGTAATCACCC 60.301 63.158 0.00 0.00 0.00 4.61
101 102 2.726822 GATCGCCCCGTAATCACCCC 62.727 65.000 0.00 0.00 0.00 4.95
102 103 4.903010 CGCCCCGTAATCACCCCG 62.903 72.222 0.00 0.00 0.00 5.73
103 104 3.472726 GCCCCGTAATCACCCCGA 61.473 66.667 0.00 0.00 0.00 5.14
104 105 3.033919 GCCCCGTAATCACCCCGAA 62.034 63.158 0.00 0.00 0.00 4.30
105 106 1.153309 CCCCGTAATCACCCCGAAC 60.153 63.158 0.00 0.00 0.00 3.95
106 107 1.519898 CCCGTAATCACCCCGAACG 60.520 63.158 0.00 0.00 0.00 3.95
107 108 1.519898 CCGTAATCACCCCGAACGG 60.520 63.158 6.25 6.25 46.04 4.44
108 109 2.169146 CGTAATCACCCCGAACGGC 61.169 63.158 7.80 0.00 0.00 5.68
109 110 1.078988 GTAATCACCCCGAACGGCA 60.079 57.895 7.80 0.00 0.00 5.69
110 111 0.674269 GTAATCACCCCGAACGGCAA 60.674 55.000 7.80 0.00 0.00 4.52
111 112 0.674269 TAATCACCCCGAACGGCAAC 60.674 55.000 7.80 0.00 0.00 4.17
112 113 2.684192 AATCACCCCGAACGGCAACA 62.684 55.000 7.80 0.00 0.00 3.33
113 114 3.353836 CACCCCGAACGGCAACAG 61.354 66.667 7.80 0.00 0.00 3.16
114 115 4.636435 ACCCCGAACGGCAACAGG 62.636 66.667 7.80 5.90 0.00 4.00
115 116 4.323477 CCCCGAACGGCAACAGGA 62.323 66.667 7.80 0.00 0.00 3.86
116 117 2.046314 CCCGAACGGCAACAGGAT 60.046 61.111 7.80 0.00 0.00 3.24
117 118 1.219664 CCCGAACGGCAACAGGATA 59.780 57.895 7.80 0.00 0.00 2.59
118 119 0.810031 CCCGAACGGCAACAGGATAG 60.810 60.000 7.80 0.00 0.00 2.08
119 120 0.174845 CCGAACGGCAACAGGATAGA 59.825 55.000 0.00 0.00 0.00 1.98
120 121 1.560923 CGAACGGCAACAGGATAGAG 58.439 55.000 0.00 0.00 0.00 2.43
121 122 1.802880 CGAACGGCAACAGGATAGAGG 60.803 57.143 0.00 0.00 0.00 3.69
122 123 1.480954 GAACGGCAACAGGATAGAGGA 59.519 52.381 0.00 0.00 0.00 3.71
123 124 1.568504 ACGGCAACAGGATAGAGGAA 58.431 50.000 0.00 0.00 0.00 3.36
124 125 1.207329 ACGGCAACAGGATAGAGGAAC 59.793 52.381 0.00 0.00 0.00 3.62
125 126 1.473434 CGGCAACAGGATAGAGGAACC 60.473 57.143 0.00 0.00 0.00 3.62
126 127 1.134068 GGCAACAGGATAGAGGAACCC 60.134 57.143 0.00 0.00 0.00 4.11
127 128 1.840635 GCAACAGGATAGAGGAACCCT 59.159 52.381 0.00 0.00 36.03 4.34
128 129 3.039011 GCAACAGGATAGAGGAACCCTA 58.961 50.000 0.00 0.00 31.76 3.53
129 130 3.070302 GCAACAGGATAGAGGAACCCTAG 59.930 52.174 0.00 0.00 31.76 3.02
130 131 2.965562 ACAGGATAGAGGAACCCTAGC 58.034 52.381 0.00 0.00 31.76 3.42
131 132 1.889829 CAGGATAGAGGAACCCTAGCG 59.110 57.143 0.00 0.00 31.76 4.26
132 133 0.604073 GGATAGAGGAACCCTAGCGC 59.396 60.000 0.00 0.00 31.76 5.92
133 134 0.604073 GATAGAGGAACCCTAGCGCC 59.396 60.000 2.29 0.00 31.76 6.53
134 135 0.832559 ATAGAGGAACCCTAGCGCCC 60.833 60.000 2.29 0.00 31.76 6.13
135 136 2.941563 TAGAGGAACCCTAGCGCCCC 62.942 65.000 2.29 0.00 31.76 5.80
136 137 4.733725 AGGAACCCTAGCGCCCCA 62.734 66.667 2.29 0.00 28.47 4.96
137 138 3.723922 GGAACCCTAGCGCCCCAA 61.724 66.667 2.29 0.00 0.00 4.12
138 139 2.437895 GAACCCTAGCGCCCCAAC 60.438 66.667 2.29 0.00 0.00 3.77
139 140 3.253838 AACCCTAGCGCCCCAACA 61.254 61.111 2.29 0.00 0.00 3.33
140 141 3.562732 AACCCTAGCGCCCCAACAC 62.563 63.158 2.29 0.00 0.00 3.32
480 481 3.505835 CGGGAGCCTAAGAGAGAGT 57.494 57.895 0.00 0.00 0.00 3.24
481 482 1.314730 CGGGAGCCTAAGAGAGAGTC 58.685 60.000 0.00 0.00 0.00 3.36
482 483 1.699730 GGGAGCCTAAGAGAGAGTCC 58.300 60.000 0.00 0.00 0.00 3.85
483 484 1.063567 GGGAGCCTAAGAGAGAGTCCA 60.064 57.143 0.00 0.00 0.00 4.02
484 485 2.425683 GGGAGCCTAAGAGAGAGTCCAT 60.426 54.545 0.00 0.00 0.00 3.41
485 486 2.890945 GGAGCCTAAGAGAGAGTCCATC 59.109 54.545 0.00 0.00 0.00 3.51
486 487 3.436470 GGAGCCTAAGAGAGAGTCCATCT 60.436 52.174 0.00 0.00 42.61 2.90
493 494 3.201494 AGAGTCCATCTCCGCGTG 58.799 61.111 4.92 0.00 43.71 5.34
494 495 1.679305 AGAGTCCATCTCCGCGTGT 60.679 57.895 4.92 0.00 43.71 4.49
495 496 1.215647 GAGTCCATCTCCGCGTGTT 59.784 57.895 4.92 0.00 37.22 3.32
496 497 0.802607 GAGTCCATCTCCGCGTGTTC 60.803 60.000 4.92 0.00 37.22 3.18
497 498 2.158959 GTCCATCTCCGCGTGTTCG 61.159 63.158 4.92 0.00 40.37 3.95
504 505 4.657824 CCGCGTGTTCGGGTGAGT 62.658 66.667 4.92 0.00 46.13 3.41
505 506 3.103911 CGCGTGTTCGGGTGAGTC 61.104 66.667 0.00 0.00 43.36 3.36
506 507 2.028484 GCGTGTTCGGGTGAGTCA 59.972 61.111 0.00 0.00 37.56 3.41
507 508 1.593209 GCGTGTTCGGGTGAGTCAA 60.593 57.895 0.00 0.00 37.56 3.18
508 509 1.828331 GCGTGTTCGGGTGAGTCAAC 61.828 60.000 0.00 0.00 37.56 3.18
509 510 1.219522 CGTGTTCGGGTGAGTCAACC 61.220 60.000 17.99 17.99 37.98 3.77
515 516 2.358737 GGTGAGTCAACCCGCCTG 60.359 66.667 0.00 0.00 33.79 4.85
516 517 2.741092 GTGAGTCAACCCGCCTGA 59.259 61.111 0.00 0.00 0.00 3.86
517 518 1.374758 GTGAGTCAACCCGCCTGAG 60.375 63.158 0.00 0.00 0.00 3.35
518 519 1.837051 TGAGTCAACCCGCCTGAGT 60.837 57.895 0.00 0.00 0.00 3.41
519 520 0.541063 TGAGTCAACCCGCCTGAGTA 60.541 55.000 0.00 0.00 0.00 2.59
520 521 0.173708 GAGTCAACCCGCCTGAGTAG 59.826 60.000 0.00 0.00 0.00 2.57
522 523 1.229082 TCAACCCGCCTGAGTAGGT 60.229 57.895 0.00 0.00 46.41 3.08
523 524 0.040058 TCAACCCGCCTGAGTAGGTA 59.960 55.000 0.00 0.00 46.41 3.08
524 525 0.460311 CAACCCGCCTGAGTAGGTAG 59.540 60.000 0.00 0.00 46.41 3.18
525 526 0.686769 AACCCGCCTGAGTAGGTAGG 60.687 60.000 0.00 0.00 46.41 3.18
584 585 0.106708 TTTTGACAGCTCGGCTCACT 59.893 50.000 0.00 0.00 36.40 3.41
619 622 5.164233 CGCAAGAGTTCATCACTTTCTCTA 58.836 41.667 0.00 0.00 35.01 2.43
621 624 6.019961 CGCAAGAGTTCATCACTTTCTCTATC 60.020 42.308 0.00 0.00 35.01 2.08
623 626 7.548780 GCAAGAGTTCATCACTTTCTCTATCTT 59.451 37.037 0.00 0.00 35.01 2.40
711 714 4.410492 AATCACGAACAGCTTGCTAAAG 57.590 40.909 0.00 0.00 36.41 1.85
714 717 3.494626 TCACGAACAGCTTGCTAAAGAAG 59.505 43.478 0.00 0.00 35.19 2.85
722 725 2.794621 GCTAAAGAAGCGGCAGGC 59.205 61.111 1.45 0.00 42.53 4.85
723 726 2.765356 GCTAAAGAAGCGGCAGGCC 61.765 63.158 1.45 0.00 45.17 5.19
724 727 2.045340 TAAAGAAGCGGCAGGCCC 60.045 61.111 0.00 0.00 45.17 5.80
725 728 3.638592 TAAAGAAGCGGCAGGCCCC 62.639 63.158 0.00 0.00 45.17 5.80
732 735 4.431131 CGGCAGGCCCCAGTTCAT 62.431 66.667 0.00 0.00 0.00 2.57
733 736 3.006677 GGCAGGCCCCAGTTCATA 58.993 61.111 0.00 0.00 0.00 2.15
734 737 1.306296 GGCAGGCCCCAGTTCATAA 59.694 57.895 0.00 0.00 0.00 1.90
735 738 0.324275 GGCAGGCCCCAGTTCATAAA 60.324 55.000 0.00 0.00 0.00 1.40
736 739 1.555967 GCAGGCCCCAGTTCATAAAA 58.444 50.000 0.00 0.00 0.00 1.52
737 740 1.899142 GCAGGCCCCAGTTCATAAAAA 59.101 47.619 0.00 0.00 0.00 1.94
848 852 0.465287 AAAAACAGTGGCAAGCCCAG 59.535 50.000 8.89 0.86 46.54 4.45
865 869 0.450583 CAGCACAGTGGCACATCATC 59.549 55.000 21.41 4.68 44.52 2.92
866 870 0.037160 AGCACAGTGGCACATCATCA 59.963 50.000 21.41 0.00 44.52 3.07
901 905 1.307647 CCTGCTTGGCCCACCTAAT 59.692 57.895 0.00 0.00 36.63 1.73
914 918 2.028385 CCACCTAATAGCATCGTACCCC 60.028 54.545 0.00 0.00 0.00 4.95
1076 1123 1.079127 GGCTGTACATCACGCTGGT 60.079 57.895 0.00 0.00 0.00 4.00
1338 1387 4.436998 ACCGCGCAGTAGCCTCAC 62.437 66.667 8.75 0.00 37.52 3.51
1339 1388 4.135153 CCGCGCAGTAGCCTCACT 62.135 66.667 8.75 0.00 37.52 3.41
1356 1405 4.464244 CCTCACTCACTCATTCTGGTAAGA 59.536 45.833 0.00 0.00 0.00 2.10
1397 1446 0.736053 CTCTTCTCTCGTCTTCCCCG 59.264 60.000 0.00 0.00 0.00 5.73
1478 1527 1.136329 TCCCTCAAAGGCCTGCTTCT 61.136 55.000 5.69 0.00 32.73 2.85
1556 1606 3.254166 GGAGCAAATCACTTGATGTGTGT 59.746 43.478 10.47 0.00 46.27 3.72
1558 1608 4.139786 AGCAAATCACTTGATGTGTGTCT 58.860 39.130 10.47 0.00 46.27 3.41
1637 1691 6.206048 TGAAGCCATGAACTATGATATGCAAG 59.794 38.462 0.00 0.00 39.21 4.01
1664 1718 6.018016 GTGCTGTAAGTTGGAAAATGCAATTT 60.018 34.615 0.00 0.00 42.82 1.82
1683 1737 8.134895 TGCAATTTCTGAAATCGAGTTTAAACT 58.865 29.630 20.67 20.67 43.16 2.66
1711 1765 5.661056 ATGTAATTCCAGAGTCTTCGACA 57.339 39.130 0.00 0.00 34.60 4.35
1730 1784 8.918961 TTCGACACAAGTTTAAACATGATTTT 57.081 26.923 25.69 6.52 32.39 1.82
1767 1860 1.302033 GCTCCGTATGATGGGCTGG 60.302 63.158 0.00 0.00 0.00 4.85
1775 1868 0.401105 ATGATGGGCTGGTAGAGGCT 60.401 55.000 0.00 0.00 46.72 4.58
1779 1872 0.978146 TGGGCTGGTAGAGGCTCTTC 60.978 60.000 24.13 17.72 46.72 2.87
1785 1878 3.702045 GCTGGTAGAGGCTCTTCTCTAAA 59.298 47.826 24.13 0.00 44.89 1.85
1861 1955 9.101655 TCTCATGATGTTACATAGAACACATTG 57.898 33.333 0.00 0.00 41.93 2.82
1871 1965 5.639506 ACATAGAACACATTGCACACTAGAC 59.360 40.000 0.00 0.00 0.00 2.59
1899 1993 9.308000 TGAATGACTACCTTGTAAAATTTGGAT 57.692 29.630 0.00 0.00 0.00 3.41
2015 2109 6.758593 TTCGTACATCTTGTTGTGAACTAC 57.241 37.500 0.00 0.00 0.00 2.73
2016 2110 6.080648 TCGTACATCTTGTTGTGAACTACT 57.919 37.500 0.00 0.00 0.00 2.57
2017 2111 6.147581 TCGTACATCTTGTTGTGAACTACTC 58.852 40.000 0.00 0.00 0.00 2.59
2018 2112 5.345202 CGTACATCTTGTTGTGAACTACTCC 59.655 44.000 0.00 0.00 0.00 3.85
2019 2113 4.642429 ACATCTTGTTGTGAACTACTCCC 58.358 43.478 0.00 0.00 0.00 4.30
2020 2114 4.348168 ACATCTTGTTGTGAACTACTCCCT 59.652 41.667 0.00 0.00 0.00 4.20
2021 2115 4.602340 TCTTGTTGTGAACTACTCCCTC 57.398 45.455 0.00 0.00 0.00 4.30
2022 2116 3.323979 TCTTGTTGTGAACTACTCCCTCC 59.676 47.826 0.00 0.00 0.00 4.30
2023 2117 1.616865 TGTTGTGAACTACTCCCTCCG 59.383 52.381 0.00 0.00 0.00 4.63
2024 2118 1.617357 GTTGTGAACTACTCCCTCCGT 59.383 52.381 0.00 0.00 0.00 4.69
2025 2119 2.005370 TGTGAACTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
2026 2120 1.891150 TGTGAACTACTCCCTCCGTTC 59.109 52.381 0.00 0.00 37.02 3.95
2027 2121 1.204231 GTGAACTACTCCCTCCGTTCC 59.796 57.143 0.00 0.00 35.97 3.62
2028 2122 1.076677 TGAACTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 35.97 3.36
2029 2123 2.309755 TGAACTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 35.97 2.94
2030 2124 3.245371 TGAACTACTCCCTCCGTTCCTAA 60.245 47.826 0.00 0.00 35.97 2.69
2031 2125 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2032 2126 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2033 2127 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2034 2128 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2035 2129 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
2036 2130 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2037 2131 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2038 2132 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2039 2133 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2040 2134 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2041 2135 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2042 2136 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2043 2137 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2044 2138 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2045 2139 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2046 2140 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2047 2141 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2058 2152 8.924511 ATTTGTCTTTCTAGAGATTTCACCAA 57.075 30.769 0.00 0.00 0.00 3.67
2059 2153 7.969536 TTGTCTTTCTAGAGATTTCACCAAG 57.030 36.000 0.00 0.00 0.00 3.61
2060 2154 7.067496 TGTCTTTCTAGAGATTTCACCAAGT 57.933 36.000 0.00 0.00 0.00 3.16
2061 2155 6.931281 TGTCTTTCTAGAGATTTCACCAAGTG 59.069 38.462 0.00 0.00 34.45 3.16
2062 2156 7.155328 GTCTTTCTAGAGATTTCACCAAGTGA 58.845 38.462 0.00 0.00 41.09 3.41
2063 2157 7.117092 GTCTTTCTAGAGATTTCACCAAGTGAC 59.883 40.741 0.00 0.00 42.60 3.67
2064 2158 6.672266 TTCTAGAGATTTCACCAAGTGACT 57.328 37.500 0.00 0.00 42.60 3.41
2065 2159 7.776618 TTCTAGAGATTTCACCAAGTGACTA 57.223 36.000 0.00 0.00 42.60 2.59
2066 2160 7.159322 TCTAGAGATTTCACCAAGTGACTAC 57.841 40.000 0.00 0.00 42.60 2.73
2067 2161 5.808366 AGAGATTTCACCAAGTGACTACA 57.192 39.130 0.00 0.00 42.60 2.74
2068 2162 6.365970 AGAGATTTCACCAAGTGACTACAT 57.634 37.500 0.00 0.00 42.60 2.29
2069 2163 7.482169 AGAGATTTCACCAAGTGACTACATA 57.518 36.000 0.00 0.00 42.60 2.29
2070 2164 7.324178 AGAGATTTCACCAAGTGACTACATAC 58.676 38.462 0.00 0.00 42.60 2.39
2071 2165 6.100004 AGATTTCACCAAGTGACTACATACG 58.900 40.000 0.00 0.00 42.60 3.06
2072 2166 3.861276 TCACCAAGTGACTACATACGG 57.139 47.619 0.00 0.00 37.67 4.02
2073 2167 3.423749 TCACCAAGTGACTACATACGGA 58.576 45.455 0.00 0.00 37.67 4.69
2074 2168 3.442625 TCACCAAGTGACTACATACGGAG 59.557 47.826 0.00 0.00 37.67 4.63
2075 2169 2.165845 ACCAAGTGACTACATACGGAGC 59.834 50.000 0.00 0.00 0.00 4.70
2076 2170 2.165641 CCAAGTGACTACATACGGAGCA 59.834 50.000 0.00 0.00 0.00 4.26
2077 2171 3.368013 CCAAGTGACTACATACGGAGCAA 60.368 47.826 0.00 0.00 0.00 3.91
2078 2172 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2079 2173 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2080 2174 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2081 2175 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2082 2176 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2083 2177 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2084 2178 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2085 2179 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2086 2180 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2087 2181 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2088 2182 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2089 2183 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2090 2184 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2091 2185 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2092 2186 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2093 2187 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2094 2188 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2132 2226 4.438148 CATACATCCGTATGTTGTGTCCA 58.562 43.478 0.00 0.00 46.70 4.02
2133 2227 3.627395 ACATCCGTATGTTGTGTCCAT 57.373 42.857 0.00 0.00 44.07 3.41
2134 2228 3.950397 ACATCCGTATGTTGTGTCCATT 58.050 40.909 0.00 0.00 44.07 3.16
2135 2229 3.938963 ACATCCGTATGTTGTGTCCATTC 59.061 43.478 0.00 0.00 44.07 2.67
2136 2230 2.612604 TCCGTATGTTGTGTCCATTCG 58.387 47.619 0.00 0.00 34.25 3.34
2137 2231 2.231721 TCCGTATGTTGTGTCCATTCGA 59.768 45.455 0.00 0.00 35.82 3.71
2138 2232 2.997303 CCGTATGTTGTGTCCATTCGAA 59.003 45.455 0.00 0.00 35.82 3.71
2139 2233 3.433957 CCGTATGTTGTGTCCATTCGAAA 59.566 43.478 0.00 0.00 35.82 3.46
2140 2234 4.094294 CCGTATGTTGTGTCCATTCGAAAT 59.906 41.667 0.00 0.00 35.82 2.17
2141 2235 5.021389 CGTATGTTGTGTCCATTCGAAATG 58.979 41.667 0.00 1.20 35.82 2.32
2142 2236 3.281341 TGTTGTGTCCATTCGAAATGC 57.719 42.857 0.00 0.00 0.00 3.56
2143 2237 2.030363 TGTTGTGTCCATTCGAAATGCC 60.030 45.455 0.00 0.00 0.00 4.40
2144 2238 2.198827 TGTGTCCATTCGAAATGCCT 57.801 45.000 0.00 0.00 0.00 4.75
2145 2239 3.342377 TGTGTCCATTCGAAATGCCTA 57.658 42.857 0.00 0.00 0.00 3.93
2146 2240 3.270027 TGTGTCCATTCGAAATGCCTAG 58.730 45.455 0.00 0.00 0.00 3.02
2147 2241 3.055458 TGTGTCCATTCGAAATGCCTAGA 60.055 43.478 0.00 0.00 0.00 2.43
2148 2242 3.938963 GTGTCCATTCGAAATGCCTAGAA 59.061 43.478 0.00 0.00 0.00 2.10
2149 2243 4.394920 GTGTCCATTCGAAATGCCTAGAAA 59.605 41.667 0.00 0.00 0.00 2.52
2150 2244 4.635765 TGTCCATTCGAAATGCCTAGAAAG 59.364 41.667 0.00 0.00 0.00 2.62
2151 2245 4.876107 GTCCATTCGAAATGCCTAGAAAGA 59.124 41.667 0.00 0.00 0.00 2.52
2152 2246 4.876107 TCCATTCGAAATGCCTAGAAAGAC 59.124 41.667 0.00 0.00 0.00 3.01
2153 2247 4.635765 CCATTCGAAATGCCTAGAAAGACA 59.364 41.667 0.00 0.00 0.00 3.41
2154 2248 5.123820 CCATTCGAAATGCCTAGAAAGACAA 59.876 40.000 0.00 0.00 0.00 3.18
2155 2249 6.349280 CCATTCGAAATGCCTAGAAAGACAAA 60.349 38.462 0.00 0.00 0.00 2.83
2156 2250 6.817765 TTCGAAATGCCTAGAAAGACAAAT 57.182 33.333 0.00 0.00 0.00 2.32
2157 2251 7.915293 TTCGAAATGCCTAGAAAGACAAATA 57.085 32.000 0.00 0.00 0.00 1.40
2158 2252 8.506168 TTCGAAATGCCTAGAAAGACAAATAT 57.494 30.769 0.00 0.00 0.00 1.28
2159 2253 8.506168 TCGAAATGCCTAGAAAGACAAATATT 57.494 30.769 0.00 0.00 0.00 1.28
2160 2254 8.956426 TCGAAATGCCTAGAAAGACAAATATTT 58.044 29.630 0.00 0.00 0.00 1.40
2164 2258 9.920946 AATGCCTAGAAAGACAAATATTTAGGA 57.079 29.630 11.79 1.09 0.00 2.94
2165 2259 9.920946 ATGCCTAGAAAGACAAATATTTAGGAA 57.079 29.630 11.79 3.74 0.00 3.36
2166 2260 9.174166 TGCCTAGAAAGACAAATATTTAGGAAC 57.826 33.333 11.79 0.00 0.00 3.62
2167 2261 8.336080 GCCTAGAAAGACAAATATTTAGGAACG 58.664 37.037 11.79 0.00 0.00 3.95
2168 2262 8.827677 CCTAGAAAGACAAATATTTAGGAACGG 58.172 37.037 0.00 0.00 0.00 4.44
2169 2263 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2170 2264 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2171 2265 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2172 2266 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2173 2267 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2174 2268 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2175 2269 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2176 2270 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2184 2278 3.055312 GGAACGGAGGGAGTAGACATTTT 60.055 47.826 0.00 0.00 0.00 1.82
2277 2371 4.260170 AGTGGTTGCTTCAATGAGATCTC 58.740 43.478 16.21 16.21 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.746375 GGCTCGTGATGTGGGGGAT 61.746 63.158 0.00 0.00 0.00 3.85
1 2 3.399181 GGCTCGTGATGTGGGGGA 61.399 66.667 0.00 0.00 0.00 4.81
2 3 3.391665 GAGGCTCGTGATGTGGGGG 62.392 68.421 0.00 0.00 0.00 5.40
3 4 2.187946 GAGGCTCGTGATGTGGGG 59.812 66.667 0.00 0.00 0.00 4.96
4 5 2.187946 GGAGGCTCGTGATGTGGG 59.812 66.667 8.69 0.00 0.00 4.61
5 6 2.202797 CGGAGGCTCGTGATGTGG 60.203 66.667 8.69 0.00 0.00 4.17
6 7 2.887568 GCGGAGGCTCGTGATGTG 60.888 66.667 8.69 0.00 35.83 3.21
30 31 3.827898 CTGAGGTCTCCGGGCGTC 61.828 72.222 0.00 4.52 0.00 5.19
35 36 3.465403 CTGGCCTGAGGTCTCCGG 61.465 72.222 4.08 0.00 37.09 5.14
36 37 2.681778 ACTGGCCTGAGGTCTCCG 60.682 66.667 17.64 0.00 0.00 4.63
37 38 2.716017 CGACTGGCCTGAGGTCTCC 61.716 68.421 17.64 0.00 0.00 3.71
38 39 2.888863 CGACTGGCCTGAGGTCTC 59.111 66.667 17.64 1.81 0.00 3.36
39 40 3.386237 GCGACTGGCCTGAGGTCT 61.386 66.667 17.64 0.00 34.80 3.85
50 51 3.803082 CACCATTGGCGGCGACTG 61.803 66.667 16.45 4.24 0.00 3.51
54 55 4.787286 TACCCACCATTGGCGGCG 62.787 66.667 0.51 0.51 42.35 6.46
55 56 2.828549 CTACCCACCATTGGCGGC 60.829 66.667 0.00 0.00 42.35 6.53
56 57 2.828549 GCTACCCACCATTGGCGG 60.829 66.667 1.54 2.05 42.35 6.13
57 58 2.940890 ATCGCTACCCACCATTGGCG 62.941 60.000 1.54 0.00 42.35 5.69
58 59 0.107831 TATCGCTACCCACCATTGGC 59.892 55.000 1.54 0.00 42.35 4.52
59 60 1.542547 GGTATCGCTACCCACCATTGG 60.543 57.143 4.00 0.00 41.50 3.16
60 61 1.140052 TGGTATCGCTACCCACCATTG 59.860 52.381 12.73 0.00 46.01 2.82
61 62 1.416401 CTGGTATCGCTACCCACCATT 59.584 52.381 12.73 0.00 46.01 3.16
62 63 1.048601 CTGGTATCGCTACCCACCAT 58.951 55.000 12.73 0.00 46.01 3.55
63 64 1.046472 CCTGGTATCGCTACCCACCA 61.046 60.000 12.73 0.00 46.01 4.17
64 65 0.757935 TCCTGGTATCGCTACCCACC 60.758 60.000 12.73 0.00 46.01 4.61
65 66 1.272769 GATCCTGGTATCGCTACCCAC 59.727 57.143 12.73 0.00 46.01 4.61
66 67 1.629043 GATCCTGGTATCGCTACCCA 58.371 55.000 12.73 0.96 46.01 4.51
67 68 0.526662 CGATCCTGGTATCGCTACCC 59.473 60.000 12.73 0.00 46.01 3.69
74 75 0.896940 TACGGGGCGATCCTGGTATC 60.897 60.000 8.59 0.00 46.36 2.24
75 76 0.470456 TTACGGGGCGATCCTGGTAT 60.470 55.000 8.59 0.00 46.36 2.73
76 77 0.470456 ATTACGGGGCGATCCTGGTA 60.470 55.000 8.59 3.39 46.36 3.25
77 78 1.755393 GATTACGGGGCGATCCTGGT 61.755 60.000 8.59 4.17 46.36 4.00
78 79 1.004918 GATTACGGGGCGATCCTGG 60.005 63.158 8.59 0.00 46.36 4.45
80 81 1.746517 GTGATTACGGGGCGATCCT 59.253 57.895 0.00 0.00 35.33 3.24
81 82 1.301479 GGTGATTACGGGGCGATCC 60.301 63.158 0.00 0.00 0.00 3.36
82 83 1.301479 GGGTGATTACGGGGCGATC 60.301 63.158 0.00 0.00 0.00 3.69
83 84 2.814835 GGGGTGATTACGGGGCGAT 61.815 63.158 0.00 0.00 0.00 4.58
84 85 3.472726 GGGGTGATTACGGGGCGA 61.473 66.667 0.00 0.00 0.00 5.54
85 86 4.903010 CGGGGTGATTACGGGGCG 62.903 72.222 0.00 0.00 0.00 6.13
86 87 3.033919 TTCGGGGTGATTACGGGGC 62.034 63.158 0.00 0.00 0.00 5.80
87 88 1.153309 GTTCGGGGTGATTACGGGG 60.153 63.158 0.00 0.00 0.00 5.73
88 89 1.519898 CGTTCGGGGTGATTACGGG 60.520 63.158 0.00 0.00 29.27 5.28
89 90 1.519898 CCGTTCGGGGTGATTACGG 60.520 63.158 3.04 0.00 42.68 4.02
90 91 2.169146 GCCGTTCGGGGTGATTACG 61.169 63.158 13.16 0.00 35.78 3.18
91 92 0.674269 TTGCCGTTCGGGGTGATTAC 60.674 55.000 13.16 0.00 35.78 1.89
92 93 0.674269 GTTGCCGTTCGGGGTGATTA 60.674 55.000 13.16 0.00 35.78 1.75
93 94 1.969589 GTTGCCGTTCGGGGTGATT 60.970 57.895 13.16 0.00 35.78 2.57
94 95 2.359478 GTTGCCGTTCGGGGTGAT 60.359 61.111 13.16 0.00 35.78 3.06
95 96 3.818121 CTGTTGCCGTTCGGGGTGA 62.818 63.158 13.16 0.00 35.78 4.02
96 97 3.353836 CTGTTGCCGTTCGGGGTG 61.354 66.667 13.16 0.00 35.78 4.61
97 98 4.636435 CCTGTTGCCGTTCGGGGT 62.636 66.667 13.16 0.00 35.78 4.95
98 99 2.246761 TATCCTGTTGCCGTTCGGGG 62.247 60.000 13.16 5.39 35.78 5.73
99 100 0.810031 CTATCCTGTTGCCGTTCGGG 60.810 60.000 13.16 0.00 39.58 5.14
100 101 0.174845 TCTATCCTGTTGCCGTTCGG 59.825 55.000 6.90 6.90 0.00 4.30
101 102 1.560923 CTCTATCCTGTTGCCGTTCG 58.439 55.000 0.00 0.00 0.00 3.95
102 103 1.480954 TCCTCTATCCTGTTGCCGTTC 59.519 52.381 0.00 0.00 0.00 3.95
103 104 1.568504 TCCTCTATCCTGTTGCCGTT 58.431 50.000 0.00 0.00 0.00 4.44
104 105 1.207329 GTTCCTCTATCCTGTTGCCGT 59.793 52.381 0.00 0.00 0.00 5.68
105 106 1.473434 GGTTCCTCTATCCTGTTGCCG 60.473 57.143 0.00 0.00 0.00 5.69
106 107 1.134068 GGGTTCCTCTATCCTGTTGCC 60.134 57.143 0.00 0.00 0.00 4.52
107 108 1.840635 AGGGTTCCTCTATCCTGTTGC 59.159 52.381 0.00 0.00 0.00 4.17
108 109 3.070302 GCTAGGGTTCCTCTATCCTGTTG 59.930 52.174 0.00 0.00 34.61 3.33
109 110 3.310193 GCTAGGGTTCCTCTATCCTGTT 58.690 50.000 0.00 0.00 34.61 3.16
110 111 2.753507 CGCTAGGGTTCCTCTATCCTGT 60.754 54.545 0.00 0.00 34.61 4.00
111 112 1.889829 CGCTAGGGTTCCTCTATCCTG 59.110 57.143 0.00 0.00 34.61 3.86
112 113 1.824045 GCGCTAGGGTTCCTCTATCCT 60.824 57.143 8.77 0.00 34.61 3.24
113 114 0.604073 GCGCTAGGGTTCCTCTATCC 59.396 60.000 8.77 0.00 34.61 2.59
114 115 0.604073 GGCGCTAGGGTTCCTCTATC 59.396 60.000 7.64 0.00 34.61 2.08
115 116 0.832559 GGGCGCTAGGGTTCCTCTAT 60.833 60.000 7.64 0.00 34.61 1.98
116 117 1.457079 GGGCGCTAGGGTTCCTCTA 60.457 63.158 7.64 0.00 34.61 2.43
117 118 2.764547 GGGCGCTAGGGTTCCTCT 60.765 66.667 7.64 0.00 34.61 3.69
118 119 3.862991 GGGGCGCTAGGGTTCCTC 61.863 72.222 7.64 0.00 34.61 3.71
119 120 4.733725 TGGGGCGCTAGGGTTCCT 62.734 66.667 7.64 0.00 37.71 3.36
120 121 3.723922 TTGGGGCGCTAGGGTTCC 61.724 66.667 7.64 10.47 0.00 3.62
121 122 2.437895 GTTGGGGCGCTAGGGTTC 60.438 66.667 7.64 1.56 0.00 3.62
122 123 3.253838 TGTTGGGGCGCTAGGGTT 61.254 61.111 7.64 0.00 0.00 4.11
123 124 4.029809 GTGTTGGGGCGCTAGGGT 62.030 66.667 7.64 0.00 0.00 4.34
454 455 4.862447 TAGGCTCCCGCGACGCTA 62.862 66.667 19.02 2.17 36.88 4.26
457 458 3.471244 CTCTTAGGCTCCCGCGACG 62.471 68.421 8.23 0.00 36.88 5.12
458 459 2.065906 CTCTCTTAGGCTCCCGCGAC 62.066 65.000 8.23 0.00 36.88 5.19
459 460 1.824329 CTCTCTTAGGCTCCCGCGA 60.824 63.158 8.23 0.00 36.88 5.87
460 461 1.791103 CTCTCTCTTAGGCTCCCGCG 61.791 65.000 0.00 0.00 36.88 6.46
461 462 0.753848 ACTCTCTCTTAGGCTCCCGC 60.754 60.000 0.00 0.00 0.00 6.13
462 463 1.314730 GACTCTCTCTTAGGCTCCCG 58.685 60.000 0.00 0.00 0.00 5.14
463 464 1.063567 TGGACTCTCTCTTAGGCTCCC 60.064 57.143 0.00 0.00 0.00 4.30
464 465 2.445682 TGGACTCTCTCTTAGGCTCC 57.554 55.000 0.00 0.00 0.00 4.70
465 466 3.821033 GAGATGGACTCTCTCTTAGGCTC 59.179 52.174 0.00 0.00 45.97 4.70
466 467 3.832527 GAGATGGACTCTCTCTTAGGCT 58.167 50.000 0.00 0.00 45.97 4.58
476 477 1.251527 AACACGCGGAGATGGACTCT 61.252 55.000 12.47 0.00 44.37 3.24
477 478 0.802607 GAACACGCGGAGATGGACTC 60.803 60.000 12.47 0.00 44.24 3.36
478 479 1.215647 GAACACGCGGAGATGGACT 59.784 57.895 12.47 0.00 0.00 3.85
479 480 2.158959 CGAACACGCGGAGATGGAC 61.159 63.158 12.47 0.00 0.00 4.02
480 481 2.180769 CGAACACGCGGAGATGGA 59.819 61.111 12.47 0.00 0.00 3.41
488 489 3.103911 GACTCACCCGAACACGCG 61.104 66.667 3.53 3.53 0.00 6.01
489 490 1.593209 TTGACTCACCCGAACACGC 60.593 57.895 0.00 0.00 0.00 5.34
490 491 1.219522 GGTTGACTCACCCGAACACG 61.220 60.000 0.00 0.00 0.00 4.49
491 492 2.613390 GGTTGACTCACCCGAACAC 58.387 57.895 0.00 0.00 0.00 3.32
498 499 2.358737 CAGGCGGGTTGACTCACC 60.359 66.667 0.00 0.00 27.82 4.02
499 500 1.374758 CTCAGGCGGGTTGACTCAC 60.375 63.158 0.00 0.00 27.82 3.51
500 501 0.541063 TACTCAGGCGGGTTGACTCA 60.541 55.000 0.00 0.00 27.82 3.41
501 502 0.173708 CTACTCAGGCGGGTTGACTC 59.826 60.000 0.00 0.00 27.82 3.36
502 503 1.258445 CCTACTCAGGCGGGTTGACT 61.258 60.000 0.00 0.00 34.75 3.41
503 504 1.218316 CCTACTCAGGCGGGTTGAC 59.782 63.158 0.00 0.00 34.35 3.18
504 505 3.708210 CCTACTCAGGCGGGTTGA 58.292 61.111 0.00 0.00 34.35 3.18
513 514 3.334583 TTTTGCAGCCTACCTACTCAG 57.665 47.619 0.00 0.00 0.00 3.35
514 515 3.370527 GGATTTTGCAGCCTACCTACTCA 60.371 47.826 0.00 0.00 0.00 3.41
515 516 3.206964 GGATTTTGCAGCCTACCTACTC 58.793 50.000 0.00 0.00 0.00 2.59
516 517 2.576191 TGGATTTTGCAGCCTACCTACT 59.424 45.455 0.00 0.00 0.00 2.57
517 518 2.945668 CTGGATTTTGCAGCCTACCTAC 59.054 50.000 0.00 0.00 0.00 3.18
518 519 2.092429 CCTGGATTTTGCAGCCTACCTA 60.092 50.000 0.00 0.00 34.22 3.08
519 520 1.341383 CCTGGATTTTGCAGCCTACCT 60.341 52.381 0.00 0.00 34.22 3.08
520 521 1.106285 CCTGGATTTTGCAGCCTACC 58.894 55.000 0.00 0.00 34.22 3.18
521 522 1.839424 ACCTGGATTTTGCAGCCTAC 58.161 50.000 0.00 0.00 34.22 3.18
522 523 2.170166 CAACCTGGATTTTGCAGCCTA 58.830 47.619 0.00 0.00 34.22 3.93
523 524 0.971386 CAACCTGGATTTTGCAGCCT 59.029 50.000 0.00 0.00 34.22 4.58
524 525 0.968405 TCAACCTGGATTTTGCAGCC 59.032 50.000 0.00 0.00 34.22 4.85
525 526 1.888512 TCTCAACCTGGATTTTGCAGC 59.111 47.619 0.00 0.00 34.22 5.25
526 527 4.673580 CGATTCTCAACCTGGATTTTGCAG 60.674 45.833 0.00 0.00 35.43 4.41
584 585 6.125327 TGAACTCTTGCGTAAAAACATGAA 57.875 33.333 0.00 0.00 0.00 2.57
627 630 9.388506 CTGAGACAAAATAAGTGATTCACCTAT 57.611 33.333 13.14 7.57 34.49 2.57
686 689 6.494893 TTAGCAAGCTGTTCGTGATTTATT 57.505 33.333 4.53 0.00 0.00 1.40
687 690 6.371548 TCTTTAGCAAGCTGTTCGTGATTTAT 59.628 34.615 4.53 0.00 0.00 1.40
688 691 5.699001 TCTTTAGCAAGCTGTTCGTGATTTA 59.301 36.000 4.53 0.00 0.00 1.40
715 718 2.550699 TTATGAACTGGGGCCTGCCG 62.551 60.000 0.84 0.00 36.85 5.69
716 719 0.324275 TTTATGAACTGGGGCCTGCC 60.324 55.000 0.84 0.00 0.00 4.85
717 720 1.555967 TTTTATGAACTGGGGCCTGC 58.444 50.000 0.84 0.00 0.00 4.85
734 737 0.188342 TGGGGCTTGCCTCTCTTTTT 59.812 50.000 13.15 0.00 0.00 1.94
735 738 0.251519 CTGGGGCTTGCCTCTCTTTT 60.252 55.000 13.15 0.00 0.00 2.27
736 739 1.381851 CTGGGGCTTGCCTCTCTTT 59.618 57.895 13.15 0.00 0.00 2.52
737 740 3.085223 CTGGGGCTTGCCTCTCTT 58.915 61.111 13.15 0.00 0.00 2.85
738 741 3.726144 GCTGGGGCTTGCCTCTCT 61.726 66.667 13.15 0.00 35.22 3.10
826 829 0.752658 GGCTTGCCACTGTTTTTCCT 59.247 50.000 6.79 0.00 0.00 3.36
828 831 0.463620 TGGGCTTGCCACTGTTTTTC 59.536 50.000 14.04 0.00 0.00 2.29
834 838 3.677648 GTGCTGGGCTTGCCACTG 61.678 66.667 14.04 8.01 0.00 3.66
837 841 4.208403 ACTGTGCTGGGCTTGCCA 62.208 61.111 14.04 0.00 0.00 4.92
848 852 0.169672 GTGATGATGTGCCACTGTGC 59.830 55.000 1.29 0.00 0.00 4.57
865 869 2.858344 CAGGCCGAAGACGTAATTAGTG 59.142 50.000 0.00 0.00 37.88 2.74
866 870 2.737679 GCAGGCCGAAGACGTAATTAGT 60.738 50.000 0.00 0.00 37.88 2.24
896 900 3.162666 TGAGGGGTACGATGCTATTAGG 58.837 50.000 0.00 0.00 0.00 2.69
901 905 3.985019 TTTTTGAGGGGTACGATGCTA 57.015 42.857 0.00 0.00 0.00 3.49
925 933 4.398247 GAAGACGATGCTGTTAGCTTTTG 58.602 43.478 0.00 0.00 42.97 2.44
1222 1270 2.030027 ACATCTCCTGGGTCTCAACA 57.970 50.000 0.00 0.00 0.00 3.33
1293 1342 0.318784 GAGGATGGTGCGATACGACC 60.319 60.000 0.00 0.00 0.00 4.79
1338 1387 5.867903 AGGATCTTACCAGAATGAGTGAG 57.132 43.478 0.00 0.00 39.69 3.51
1339 1388 5.129485 GGAAGGATCTTACCAGAATGAGTGA 59.871 44.000 0.00 0.00 39.69 3.41
1397 1446 9.213799 AGACAATCAAGACATTTCTTCTCTTAC 57.786 33.333 0.00 0.00 40.34 2.34
1478 1527 9.747898 ACCAAAAACATTAACCATAGTCTCATA 57.252 29.630 0.00 0.00 0.00 2.15
1519 1568 5.787953 TTTGCTCCAACTGATGATCAAAA 57.212 34.783 0.00 0.00 0.00 2.44
1530 1579 4.147321 ACATCAAGTGATTTGCTCCAACT 58.853 39.130 0.00 0.00 36.70 3.16
1556 1606 5.204409 TGTAGAGTTTTCACGGCTTTAGA 57.796 39.130 0.00 0.00 0.00 2.10
1558 1608 5.603596 TCTTGTAGAGTTTTCACGGCTTTA 58.396 37.500 0.00 0.00 0.00 1.85
1599 1649 3.921119 TGGCTTCAAGCAATTACACTG 57.079 42.857 12.53 0.00 44.75 3.66
1637 1691 4.229876 GCATTTTCCAACTTACAGCACTC 58.770 43.478 0.00 0.00 0.00 3.51
1654 1708 7.951530 AAACTCGATTTCAGAAATTGCATTT 57.048 28.000 16.00 14.64 33.19 2.32
1664 1718 8.657074 TTCTCAAGTTTAAACTCGATTTCAGA 57.343 30.769 20.78 6.25 38.57 3.27
1683 1737 6.813649 CGAAGACTCTGGAATTACATTCTCAA 59.186 38.462 0.00 0.00 39.24 3.02
1767 1860 7.065204 CCACAAAATTTAGAGAAGAGCCTCTAC 59.935 40.741 0.00 0.00 43.30 2.59
1779 1872 8.644318 ACGTATAGTAGCCACAAAATTTAGAG 57.356 34.615 0.00 0.00 0.00 2.43
1839 1932 7.121020 TGTGCAATGTGTTCTATGTAACATCAT 59.879 33.333 0.00 0.00 41.18 2.45
1861 1955 3.601443 AGTCATTCAGGTCTAGTGTGC 57.399 47.619 0.00 0.00 0.00 4.57
1871 1965 8.028938 CCAAATTTTACAAGGTAGTCATTCAGG 58.971 37.037 0.00 0.00 0.00 3.86
1899 1993 6.262944 ACATCAAACATCTGACACAAAAGCTA 59.737 34.615 0.00 0.00 0.00 3.32
1979 2073 5.525745 AAGATGTACGAAACATGTTCACACA 59.474 36.000 12.39 13.42 46.18 3.72
1989 2083 5.583061 AGTTCACAACAAGATGTACGAAACA 59.417 36.000 0.00 0.00 43.86 2.83
2015 2109 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2016 2110 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2017 2111 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2018 2112 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2019 2113 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2020 2114 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2021 2115 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2033 2127 8.924511 TTGGTGAAATCTCTAGAAAGACAAAT 57.075 30.769 0.00 0.00 0.00 2.32
2034 2128 7.993183 ACTTGGTGAAATCTCTAGAAAGACAAA 59.007 33.333 0.00 0.00 0.00 2.83
2035 2129 7.442364 CACTTGGTGAAATCTCTAGAAAGACAA 59.558 37.037 0.00 0.00 35.23 3.18
2036 2130 6.931281 CACTTGGTGAAATCTCTAGAAAGACA 59.069 38.462 0.00 0.00 35.23 3.41
2037 2131 7.117092 GTCACTTGGTGAAATCTCTAGAAAGAC 59.883 40.741 1.77 0.00 44.49 3.01
2038 2132 7.015682 AGTCACTTGGTGAAATCTCTAGAAAGA 59.984 37.037 1.77 0.00 44.49 2.52
2039 2133 7.158021 AGTCACTTGGTGAAATCTCTAGAAAG 58.842 38.462 1.77 0.00 44.49 2.62
2040 2134 7.067496 AGTCACTTGGTGAAATCTCTAGAAA 57.933 36.000 1.77 0.00 44.49 2.52
2041 2135 6.672266 AGTCACTTGGTGAAATCTCTAGAA 57.328 37.500 1.77 0.00 44.49 2.10
2042 2136 6.719829 TGTAGTCACTTGGTGAAATCTCTAGA 59.280 38.462 1.77 0.00 44.49 2.43
2043 2137 6.925211 TGTAGTCACTTGGTGAAATCTCTAG 58.075 40.000 1.77 0.00 44.49 2.43
2044 2138 6.911250 TGTAGTCACTTGGTGAAATCTCTA 57.089 37.500 1.77 0.00 44.49 2.43
2045 2139 5.808366 TGTAGTCACTTGGTGAAATCTCT 57.192 39.130 1.77 0.00 44.49 3.10
2046 2140 6.253727 CGTATGTAGTCACTTGGTGAAATCTC 59.746 42.308 1.77 0.00 44.49 2.75
2047 2141 6.100004 CGTATGTAGTCACTTGGTGAAATCT 58.900 40.000 1.77 0.00 44.49 2.40
2048 2142 5.291128 CCGTATGTAGTCACTTGGTGAAATC 59.709 44.000 1.77 0.00 44.49 2.17
2049 2143 5.046878 TCCGTATGTAGTCACTTGGTGAAAT 60.047 40.000 1.77 0.00 44.49 2.17
2050 2144 4.281435 TCCGTATGTAGTCACTTGGTGAAA 59.719 41.667 1.77 0.00 44.49 2.69
2051 2145 3.827876 TCCGTATGTAGTCACTTGGTGAA 59.172 43.478 1.77 0.00 44.49 3.18
2052 2146 3.423749 TCCGTATGTAGTCACTTGGTGA 58.576 45.455 0.00 0.00 40.50 4.02
2053 2147 3.770666 CTCCGTATGTAGTCACTTGGTG 58.229 50.000 0.00 0.00 34.45 4.17
2054 2148 2.165845 GCTCCGTATGTAGTCACTTGGT 59.834 50.000 0.00 0.00 0.00 3.67
2055 2149 2.165641 TGCTCCGTATGTAGTCACTTGG 59.834 50.000 0.00 0.00 0.00 3.61
2056 2150 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2057 2151 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2058 2152 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2059 2153 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2060 2154 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2061 2155 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2062 2156 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2063 2157 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2064 2158 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2065 2159 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2066 2160 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2067 2161 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2068 2162 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2069 2163 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2070 2164 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2071 2165 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2072 2166 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2111 2205 4.746535 TGGACACAACATACGGATGTAT 57.253 40.909 15.10 2.23 45.93 2.29
2112 2206 4.746535 ATGGACACAACATACGGATGTA 57.253 40.909 15.10 0.00 45.93 2.29
2114 2208 3.001228 CGAATGGACACAACATACGGATG 59.999 47.826 5.94 5.94 39.16 3.51
2115 2209 3.118920 TCGAATGGACACAACATACGGAT 60.119 43.478 0.00 0.00 0.00 4.18
2116 2210 2.231721 TCGAATGGACACAACATACGGA 59.768 45.455 0.00 0.00 0.00 4.69
2117 2211 2.612604 TCGAATGGACACAACATACGG 58.387 47.619 0.00 0.00 0.00 4.02
2118 2212 4.655440 TTTCGAATGGACACAACATACG 57.345 40.909 0.00 0.00 0.00 3.06
2119 2213 4.793216 GCATTTCGAATGGACACAACATAC 59.207 41.667 0.00 0.00 0.00 2.39
2120 2214 4.142491 GGCATTTCGAATGGACACAACATA 60.142 41.667 0.00 0.00 0.00 2.29
2121 2215 3.367292 GGCATTTCGAATGGACACAACAT 60.367 43.478 0.00 0.00 0.00 2.71
2122 2216 2.030363 GGCATTTCGAATGGACACAACA 60.030 45.455 0.00 0.00 0.00 3.33
2123 2217 2.228822 AGGCATTTCGAATGGACACAAC 59.771 45.455 0.00 0.00 0.00 3.32
2124 2218 2.513753 AGGCATTTCGAATGGACACAA 58.486 42.857 0.00 0.00 0.00 3.33
2125 2219 2.198827 AGGCATTTCGAATGGACACA 57.801 45.000 0.00 0.00 0.00 3.72
2126 2220 3.531538 TCTAGGCATTTCGAATGGACAC 58.468 45.455 0.00 0.00 0.00 3.67
2127 2221 3.904800 TCTAGGCATTTCGAATGGACA 57.095 42.857 0.00 0.00 0.00 4.02
2128 2222 4.876107 TCTTTCTAGGCATTTCGAATGGAC 59.124 41.667 0.00 0.00 0.00 4.02
2129 2223 4.876107 GTCTTTCTAGGCATTTCGAATGGA 59.124 41.667 0.00 0.00 0.00 3.41
2130 2224 4.635765 TGTCTTTCTAGGCATTTCGAATGG 59.364 41.667 0.00 0.00 29.10 3.16
2131 2225 5.801350 TGTCTTTCTAGGCATTTCGAATG 57.199 39.130 0.00 0.86 29.10 2.67
2132 2226 6.817765 TTTGTCTTTCTAGGCATTTCGAAT 57.182 33.333 0.00 0.00 35.56 3.34
2133 2227 6.817765 ATTTGTCTTTCTAGGCATTTCGAA 57.182 33.333 0.00 0.00 35.56 3.71
2134 2228 8.506168 AATATTTGTCTTTCTAGGCATTTCGA 57.494 30.769 0.00 0.00 35.56 3.71
2138 2232 9.920946 TCCTAAATATTTGTCTTTCTAGGCATT 57.079 29.630 11.05 0.00 35.56 3.56
2139 2233 9.920946 TTCCTAAATATTTGTCTTTCTAGGCAT 57.079 29.630 11.05 0.00 35.56 4.40
2140 2234 9.174166 GTTCCTAAATATTTGTCTTTCTAGGCA 57.826 33.333 11.05 0.00 33.22 4.75
2141 2235 8.336080 CGTTCCTAAATATTTGTCTTTCTAGGC 58.664 37.037 11.05 0.00 0.00 3.93
2142 2236 8.827677 CCGTTCCTAAATATTTGTCTTTCTAGG 58.172 37.037 11.05 6.95 0.00 3.02
2143 2237 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2144 2238 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2145 2239 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2146 2240 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2147 2241 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2148 2242 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2149 2243 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2150 2244 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2151 2245 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2152 2246 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2153 2247 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2154 2248 6.267242 GTCTACTCCCTCCGTTCCTAAATATT 59.733 42.308 0.00 0.00 0.00 1.28
2155 2249 5.774184 GTCTACTCCCTCCGTTCCTAAATAT 59.226 44.000 0.00 0.00 0.00 1.28
2156 2250 5.136105 GTCTACTCCCTCCGTTCCTAAATA 58.864 45.833 0.00 0.00 0.00 1.40
2157 2251 3.959449 GTCTACTCCCTCCGTTCCTAAAT 59.041 47.826 0.00 0.00 0.00 1.40
2158 2252 3.245371 TGTCTACTCCCTCCGTTCCTAAA 60.245 47.826 0.00 0.00 0.00 1.85
2159 2253 2.309755 TGTCTACTCCCTCCGTTCCTAA 59.690 50.000 0.00 0.00 0.00 2.69
2160 2254 1.918262 TGTCTACTCCCTCCGTTCCTA 59.082 52.381 0.00 0.00 0.00 2.94
2161 2255 0.702902 TGTCTACTCCCTCCGTTCCT 59.297 55.000 0.00 0.00 0.00 3.36
2162 2256 1.777941 ATGTCTACTCCCTCCGTTCC 58.222 55.000 0.00 0.00 0.00 3.62
2163 2257 3.889520 AAATGTCTACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
2164 2258 3.838903 AGAAAATGTCTACTCCCTCCGTT 59.161 43.478 0.00 0.00 33.56 4.44
2165 2259 3.195825 CAGAAAATGTCTACTCCCTCCGT 59.804 47.826 0.00 0.00 33.56 4.69
2166 2260 3.447586 TCAGAAAATGTCTACTCCCTCCG 59.552 47.826 0.00 0.00 33.56 4.63
2167 2261 5.422214 TTCAGAAAATGTCTACTCCCTCC 57.578 43.478 0.00 0.00 33.56 4.30
2168 2262 6.540551 GGATTTCAGAAAATGTCTACTCCCTC 59.459 42.308 0.00 0.00 35.21 4.30
2169 2263 6.216456 AGGATTTCAGAAAATGTCTACTCCCT 59.784 38.462 0.00 0.00 35.21 4.20
2170 2264 6.418946 AGGATTTCAGAAAATGTCTACTCCC 58.581 40.000 0.00 0.00 35.21 4.30
2171 2265 7.929941 AAGGATTTCAGAAAATGTCTACTCC 57.070 36.000 0.00 0.00 35.21 3.85
2172 2266 9.660180 ACTAAGGATTTCAGAAAATGTCTACTC 57.340 33.333 0.00 0.00 35.21 2.59
2176 2270 8.924511 TCAACTAAGGATTTCAGAAAATGTCT 57.075 30.769 0.00 0.00 35.21 3.41
2212 2306 9.581289 TCTGAAGACACCCAAATAATTAAAAGA 57.419 29.630 0.00 0.00 0.00 2.52
2236 2330 5.726793 ACCACTCATTAAACCAGGATAGTCT 59.273 40.000 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.