>input_sequence_83618
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------ATGAGCGGTAGCGCGTTCGACGCGTTCAAGTCGCACGTGCCGGCGGCGAGCAGCCCGCGGCTGTACATCACGCT
GGTGCG-CGGCCTCCCCGGCACGCGCCGCCTACACCGCCGCACGCTCGAGGCCATGCGTCTCCGCCGTTGCCACCGCACC
GTCGATCACCTCACCGCGCCCCCCTCCTCGCCTCCTCGGCATTCTCACCCAGTTCAAGCGCCTCGTCGCTGTTGAGACCC
AGGAGATGTACGACGCGCGGAGGAACG-CGACGTGCTGCGCCGCGCGCCCAGGCCGCCGCTGGTCGTATCGCACCATCCT
CCGATGCCGACCGCGCAGTAG-----------------------------------------------------------
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>chr7B_1_TraesCS7B01G224000
ATCCCCCACATCACGAGCCTCCGCCATGCCGACGCCCGGAGACCTCAGGCCAGTCGCCGCCAATGGTGGGTAGCGATACC
AGGATCGCCCCGTAATCACCCCGAACGGCAACAGGATAGAGGAACCCTAGCGCCCCAACACGGCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGGAACCGCCTGCCGCCCTAGCGTCGCGGGAGCCTAAGAGAGAG
TCCATCTCCGCGTGTTCGGGTGAGTCAACCCGCCTGAGTAGGTAGGCTGCAAAATCCAGGTTGAGAATCGGCTGGCGTCA
TGTTTTTTTGACAGCTCGGCTCACTTCATGTTTTTACGCAAGAGTTCATCACTTTCTC--TATCTTTTTATAGGTGAATC
ACTTATTTTGTCTCAGACACGAAATCGCGAACAGCAACTCAAAAAATAAATAAATCACGAACAGCTTGCTAAAGAAGCGG
CAGGCCCCAGTTCATAAAAAAGAGAGGCAAGCCCCAGCTGAAAAAAAGAAAAAAAACCCGGCAAGCACCAGCTCATTTTT
TTGAGCAAAAGCCTCAGCTCATAAAAAAAGGAAAA-ACAGTGGCAAGCCCAGCACAGTGGCACATCATCACTAATTACGT
CTTCGGCCTGCTTGGCCCACCTAATAGCATCGTACCCC----TCAAAAAAGAC---------------------------
------------AAAAGCTAACAGCATCGTCTTCCTTCCCGCCGGCCACCGCACGAACTTTGAGAGGACTCGAGAAGATC
AGAACGATGAGCGGTAGCGCGTTCGACGCGTTCAAGTCGCACGTGCCGGCGGCGAGCAGCCCGCGGCTGTACATCACGCT
GGTGCG-CGGCCTCCCCGGCACGCGCCGCCTACACCGCCGCACGCTCGAGGCCATGCGTCTCCGCCGTTGCCACCGCACC
GTCGATCACCTCACCGCGCCCCCCTCCTCGCCTCCTCGGCATTCTCACCCAGTTCAAGCGCCTCGTCGCTGTTGAGACCC
AGGAGATGTACGACGCGCGGAGGAACG-CGACGTGCTGCGCCGCGCGCCCAGGCCGCCGCTGGTCGTATCGCACCATCCT
CCGATGCCGACCGCGCAGTAGCCTCACTCACTCATTCTGGTAAGATCCTTCCTCTATGGATTCTCGCTCTTCTCTCGTCT
TCCCCGTAAGAGAAGAAATGTCTTGATTGTCTTGACTGCTTGCGCGTGCGGTGTTTGATGCAATGCCTCCCTCAAAGGCC
TGCTTCTATGAGACTATGGTTAATGTTTTTGGTGTTACCGTTTGGTATTTTGATCATCAGTT-GGAGCAAATCACTTGAT
GTGTGTCTAAAGCCGTGAAAACTCTACAAGATAGAACTCTGAATTCTTCAGTGTAATTGCTTGAAGCCATGAACTAT---
-GATATGCAAGAGTGCTGTAAGTTGGAAAATGCAATTTCTGAAATCGAGTTTAAACTTGAGAATGTAATTCCAGAGTCTT
CGACACAAGTTTAAACATGATTTTATTT---------------------------------------TTTCAAAGCTAAT
TGCTCCGTATGATGGGCTGGTAGAGGCTCTTCTCTAAATTTTGTGGCTACTATACGTAGGCATACGAAATGTTCTATGCT
TAAATAATCTCATGATGTTA-CATAGAACACATTGCACACTAGACCTGAATGACTACCTTGTAAAATTTGGATAGCTTTT
GTGTCAGATGTTTGATGTAAACATCTTAAAAAGTGCTGTACATGACTGCCGGCCATCACTAAAAAATAAAAATGTGTGAA
CATGTTTCGTACATCTTGTTGTGAACTACTCCCTCCGTTCCTAAATATTTGTCTTTCTAGAGATTTCACCAAGTGACTAC
ATACGGAGCAAAATGAGTGAATCTACACTCTAAAATATGTCTACATACATCCGTATGTTGTGTCCATTCGAAATGCCTAG
AAAGACAAATATTTAGGAACGGAGGGAGTAGACATTTTCTGAAATCCTTAGTTGATGATAATTTTTCTTTTAATTATTTG
GGTGTCTTCAGACTATCCTGGTTTAATGAGTGGTTGCTTCAATGAGATCTCCTGATTCGTGTGTGAAAAAAAACATGGCA
TTAATATGGTAGAACAGAACTGAAAA
>chr7D_528
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-----------------------------------------------TGCAAAATCCAGATTGAGAATCGTCTGGCGTCA
TGGTTTTTTGACAGTTTGGCTCACGTCATGTTTTTACGCAAGAGTTCATCACTTACTTTATTTATCTTTTTCGGTGGATC
ACTTATTTTGTCTC-GACACGAAATCACGAACAGCAACTCAAAAAATA---AAATCACGAACAGCTTGCTAAAAAAC---
-----------------------GAGGCAAGCCCCAGCTCAAAAAAGGGAAAAAAAG-CGGCAAGCCCCAGCTCATTTTT
TTGAGCAAAAGCCCGAGCTCATAAAAAAGGAAAAA-AAAGCGGCAAGCCCATCACAGTGGCACATCAT---TAATTACGT
CTTCGGCCTGCTTGGCCCAGCTAACAGCATCGTACCCGAGTTTCAAAAAAGAAGAAGAAGAAGAAAAAACAGCATCGTAC
CCCTAGGAAAAAAAAAGCTAACAGCATCGTCTTCCTTCCCGCCGGCCACCGCACGAACTTT-----GACTCGAGAAGATC
AGAACGATAAGCGGTAGCGCGTTCGACGCGTTCAAGTCGCGCGTGCCGGCGGCGTGCAGCCCGCGGCTGTACATCACGCT
GGCGCGCCGGCCTCCCCGGCACGCGCCGCTTACACCGCCGCACGCTGGAGGCCATGCGTCTCCGCCGTTACCACCGCACC
GTCGATCACCTCACCGTGCCCCCCTCCTCGCCTCCTCGGCATTCCCACCCAGTTAAAGCGCCTCGTCGCCGTTGAGACCC
AGGAGATGCACGACGCGCGGAGGCACGCCGACGAGCTGCGCCGCGCGCCCAGGCCGCCGCTCGTCGTATCGCACCATCGT
CCGATGCCGACCGCGCAGCAGCCTCATCCACTCATTCTGATAAGCTCCTTCCTCTATGGATTCTCGCTCTTGTCTCGTCT
TCCCCATAAGAGAAGAAATGTCTTGATTGTCTTGACTGCTTGCGCGTGCGGTGTTTGATGCAATGCTTCCCTCAAAGGCC
TGCTTCCATGAGACTATGATTAATGTTTTTGGTGTTACCGTTTGGTACTTTGATCATCTGTTGGGAGCAAATCACTTGAT
GTGTGCCCAAAGCCGTGAAAACTCTACAAGATAGAACTCTGAATTCTTTAGTGTAATTGCTTGAAGCCATGAACTCTACA
AGATATGCAAAAGTGCTGTAAGTTGGAGAATGCAATTGCTGAAATCGATTTTAAACATGAGAATGTAATTCCAGAGTCTT
CGACGCAAGTTTAGACCTGATTTAGAATGCATCTTATTTCTGGTTATACACTTGTAAGCTAACTAACTTTCAAAGCTAAT
TGCTCCGTATGATGGGCTGCTAGAGGCACTTTTCTAATTTTTGTGGCTACTATACGTAGGCATATGAAATGTTCTATGCT
TAAATAATCTCGTGATGTTAACATAGAACACATTTCACACTAGATCTGAATGACTACCTTGTAAAATTTGGACAGCTTTT
GTGTCAGATGTTTGATGTAAACATCTTAAAAAGTGCTGTACATGACTGGTGGCCATCACTAAAAAATAAAAAAGTGTGAA
CAAGTTTCGTACATCTTGTTGTGAACTA----------------------------------------------------
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------------------------------GACATTTGCTGAAATCCTTAGTCGATGATATTTT--CTTTTAATTATTTG
GGTGTCTTCGGACTATCCTGGTTTAATGAGTGGTTGCTTCAATGAGATCTTCTGATTCGTGTGTGAAAAAAAACATGGCA
TTAATATGGTAGAACAGAACTGAAAA
>chr7A_528
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-----------------------------------------------TGCAAAATCCAGGTTGAGAATCGGCTGGCGTCA
TGTTTTTTTGACAGCTCGGCTCATGTCATGTTTGTACGCA--------------TCAC--TTTATCTTTTTAGGTGAATC
ACTTGTTTTGTCTC-GACACGAAATCGCGAACAGCAACTAAAAAAA------AATCACGGACAGCTTGCTAAAAAAC---
-----------------------GAGGCAAGCCCCAGCTCAAAAAAGGTAAAAAAAG-CGGCAAGCCCCACCTCATTTTT
TTGAGCAAAAGCCAGAGCTCATAAAAAAGGAAAAACAAAGCGGCAAGCCCATCACAGTGGCACATCA---CTAATTACGT
CTTCGGCCTGCTTGGCCCAGCTAACAGCATCGTACCCGAGTTTCAAAAAAGAAAAAA---------------CATCGTAC
CCCTAGGAAA--AAAAGCTAACAGCATCGTCTTCCTTCCCGCCGGCCACCGCACGAACTTTGAGAGGACTCGGGAAGATC
AGAACGATGAGCGGTAGCGCGTTCGACGCGTTCAAGTCGCGCGTGCC---------------------------------
----CG-CGGCCTCCCCGGCACGCGCCGCCTACACCGCCGCACGCTCGAGGCCATGCGCCTCCGCCGCTGCCACCGCACC
GTCGATCACCTCACCGCGGCCCCCTCCTCGCCTCCTCGGCATTCTTACCCATTTCAAGCGCCTCGTCGCCGTTGAGACCC
AGGAGATGTACGACGCGCGGAGGCACGCCGACGAGCTGCGCCGCGCGCCCAGGCCGCCGCTCGTCGTATCGCACCATCCT
CCGATGCCGACCGCGCAGTAGCCTCATCCACTCATTCTGGTAAGCTCCTTCCTCTATGGATTCTCGCTCTTCTCTCGTCT
TCCCCATAAGAGAAGAAATGTCTTGATTGTCTTGACTGCTTGCGCGTGCGTTGTTTGATGCAATGCCTCCCCCAAAGGCC
TGCTTCGATGAGACTATGGTTAATGTTTTTGGTGTTACCGTTTGGTACTTTGATCATCTGTT-GGAGCAAATCACTTGAT
GTGTGCCCACAGCCGTGAAAACTCTACAAGATAGAACTCTGAATTCTTTAGTGTAATTGCTTGAAGCCATGAACTAT---
-GATATGCAAAAGTGCTGTAAGTTGGAGAATGCAACTGCTGAAATCGAGTTTAAACACGAGAATGTAATTCCAGAGTCTT
CGCCGCAAGTTTAAACATGATTT---------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------
------------------------S------------------------------------S-S-S---S----------
--------------S---------------------------------SSS----------------------S--SSSS
SSSSSSSSSSSSSSSSSSSSSSS----------------S------S-S-------SS--------S-------------
-------------SS-------------S-S------S--S----------S----------------SS----------
-------------------S----S------------S--------------S---------------------------
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----------------------------------------S-------------S-------------------------
--S-----------------------------------------------------------------------------
---------------------------------------------------------------------S----------
-----------------------S---------S---------------------------S------------------
--------------------------SS----------------S-----------------------------------
-----S--------------------------------------------------------------------------
------S----------------------------------------S----------S---------------------
-----S-S----------------------------------------S-------------------------------
----------S----------------S---------S------------------S-----------------------
----S------------------SSSS-----------------------------------------------------
-------------------S-------S---S-----S--------------------------S---------------
-----------S----------------------S---------S---------------------------S-------
------------------------------------------------SS----------------------S-------
--S-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--------------S-------S---SS--------------
---------S----------------------------------------S-----------------------------
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>forward_870
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--------------------------------------------------AGCACAGTGGCACATCATCA----------
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>reverse_2255
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--------------AGGAACGGAGGGAGTAGACA----------------------------------------------
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