Multiple sequence alignment - TraesCS7B01G212700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G212700 chr7B 100.000 2476 0 0 1 2476 388690852 388688377 0.000000e+00 4573.0
1 TraesCS7B01G212700 chr7B 87.971 956 81 7 586 1507 609891521 609892476 0.000000e+00 1098.0
2 TraesCS7B01G212700 chr7B 95.990 399 12 1 128 526 362413266 362413660 0.000000e+00 645.0
3 TraesCS7B01G212700 chr7B 100.000 37 0 0 2204 2240 388688620 388688584 4.420000e-08 69.4
4 TraesCS7B01G212700 chr7B 100.000 37 0 0 2233 2269 388688649 388688613 4.420000e-08 69.4
5 TraesCS7B01G212700 chr7D 91.037 1640 97 23 515 2110 392552580 392550947 0.000000e+00 2169.0
6 TraesCS7B01G212700 chr7D 93.333 135 9 0 1 135 392552710 392552576 1.500000e-47 200.0
7 TraesCS7B01G212700 chr7D 89.474 57 4 2 2185 2240 162668513 162668458 1.230000e-08 71.3
8 TraesCS7B01G212700 chr2B 88.168 955 75 12 584 1504 382563603 382562653 0.000000e+00 1103.0
9 TraesCS7B01G212700 chr2B 87.734 962 82 9 581 1507 593651562 593650602 0.000000e+00 1090.0
10 TraesCS7B01G212700 chr2B 87.249 847 74 9 619 1431 317097688 317098534 0.000000e+00 935.0
11 TraesCS7B01G212700 chr2B 96.526 403 10 1 128 530 714951428 714951826 0.000000e+00 664.0
12 TraesCS7B01G212700 chr2B 94.313 422 17 4 128 548 618508069 618507654 7.470000e-180 640.0
13 TraesCS7B01G212700 chr4B 87.841 954 83 19 586 1507 612999876 613000828 0.000000e+00 1088.0
14 TraesCS7B01G212700 chr4B 87.723 953 81 9 586 1505 232154039 232154988 0.000000e+00 1079.0
15 TraesCS7B01G212700 chr3D 87.120 955 80 18 586 1506 560264043 560264988 0.000000e+00 1042.0
16 TraesCS7B01G212700 chr3D 93.007 429 22 6 128 556 595733076 595732656 9.730000e-174 619.0
17 TraesCS7B01G212700 chr3D 92.982 57 1 3 2186 2240 24755087 24755032 2.040000e-11 80.5
18 TraesCS7B01G212700 chr3B 86.925 956 88 11 584 1505 456319070 456318118 0.000000e+00 1038.0
19 TraesCS7B01G212700 chr5B 86.506 956 93 22 586 1506 8879118 8878164 0.000000e+00 1018.0
20 TraesCS7B01G212700 chr5B 91.084 572 45 4 938 1504 691805208 691804638 0.000000e+00 769.0
21 TraesCS7B01G212700 chr5B 95.990 399 12 1 128 526 507965633 507965239 0.000000e+00 645.0
22 TraesCS7B01G212700 chr5B 92.677 437 21 8 121 553 232855010 232854581 9.730000e-174 619.0
23 TraesCS7B01G212700 chr5D 91.930 570 44 2 936 1504 547889380 547888812 0.000000e+00 797.0
24 TraesCS7B01G212700 chr5D 87.500 56 3 4 2180 2233 520247028 520246975 7.390000e-06 62.1
25 TraesCS7B01G212700 chr5D 96.970 33 1 0 2181 2213 7726012 7726044 3.440000e-04 56.5
26 TraesCS7B01G212700 chr5D 96.970 33 1 0 2181 2213 7731783 7731815 3.440000e-04 56.5
27 TraesCS7B01G212700 chr1D 82.054 964 121 27 578 1504 426757862 426756914 0.000000e+00 774.0
28 TraesCS7B01G212700 chr1A 82.425 899 121 18 578 1441 521871112 521870216 0.000000e+00 750.0
29 TraesCS7B01G212700 chr4A 83.766 770 81 24 1501 2238 648752389 648751632 0.000000e+00 689.0
30 TraesCS7B01G212700 chr6B 96.758 401 11 1 128 526 360047241 360046841 0.000000e+00 667.0
31 TraesCS7B01G212700 chr6A 95.990 399 12 1 128 526 569460765 569460371 0.000000e+00 645.0
32 TraesCS7B01G212700 chr1B 95.980 398 12 3 128 525 654319679 654319286 0.000000e+00 643.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G212700 chr7B 388688377 388690852 2475 True 1570.6 4573 100.000 1 2476 3 chr7B.!!$R1 2475
1 TraesCS7B01G212700 chr7B 609891521 609892476 955 False 1098.0 1098 87.971 586 1507 1 chr7B.!!$F2 921
2 TraesCS7B01G212700 chr7D 392550947 392552710 1763 True 1184.5 2169 92.185 1 2110 2 chr7D.!!$R2 2109
3 TraesCS7B01G212700 chr2B 382562653 382563603 950 True 1103.0 1103 88.168 584 1504 1 chr2B.!!$R1 920
4 TraesCS7B01G212700 chr2B 593650602 593651562 960 True 1090.0 1090 87.734 581 1507 1 chr2B.!!$R2 926
5 TraesCS7B01G212700 chr2B 317097688 317098534 846 False 935.0 935 87.249 619 1431 1 chr2B.!!$F1 812
6 TraesCS7B01G212700 chr4B 612999876 613000828 952 False 1088.0 1088 87.841 586 1507 1 chr4B.!!$F2 921
7 TraesCS7B01G212700 chr4B 232154039 232154988 949 False 1079.0 1079 87.723 586 1505 1 chr4B.!!$F1 919
8 TraesCS7B01G212700 chr3D 560264043 560264988 945 False 1042.0 1042 87.120 586 1506 1 chr3D.!!$F1 920
9 TraesCS7B01G212700 chr3B 456318118 456319070 952 True 1038.0 1038 86.925 584 1505 1 chr3B.!!$R1 921
10 TraesCS7B01G212700 chr5B 8878164 8879118 954 True 1018.0 1018 86.506 586 1506 1 chr5B.!!$R1 920
11 TraesCS7B01G212700 chr5B 691804638 691805208 570 True 769.0 769 91.084 938 1504 1 chr5B.!!$R4 566
12 TraesCS7B01G212700 chr5D 547888812 547889380 568 True 797.0 797 91.930 936 1504 1 chr5D.!!$R2 568
13 TraesCS7B01G212700 chr1D 426756914 426757862 948 True 774.0 774 82.054 578 1504 1 chr1D.!!$R1 926
14 TraesCS7B01G212700 chr1A 521870216 521871112 896 True 750.0 750 82.425 578 1441 1 chr1A.!!$R1 863
15 TraesCS7B01G212700 chr4A 648751632 648752389 757 True 689.0 689 83.766 1501 2238 1 chr4A.!!$R1 737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.030908 GTATCTGCCGGAACCGAGAG 59.969 60.0 15.07 9.52 42.83 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2158 2247 0.462047 CGACCAACCCCACATAGCTC 60.462 60.0 0.0 0.0 0.0 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.407340 TAAAAAGTTGGGTGGGCCAT 57.593 45.000 10.70 0.00 36.17 4.40
28 29 2.679342 GGGTGGGCCATAGAGCACA 61.679 63.158 10.70 0.00 46.06 4.57
43 44 7.439056 CCATAGAGCACAAACTTTTTCATGTTT 59.561 33.333 0.00 0.00 36.91 2.83
122 123 7.964604 TTCTCATTGATTGATAGATGAGCAG 57.035 36.000 7.20 0.00 43.15 4.24
138 139 8.019656 AGATGAGCAGATGCATATATATGACA 57.980 34.615 24.06 19.94 45.16 3.58
139 140 8.483758 AGATGAGCAGATGCATATATATGACAA 58.516 33.333 24.06 10.43 45.16 3.18
140 141 9.106070 GATGAGCAGATGCATATATATGACAAA 57.894 33.333 24.06 8.23 45.16 2.83
141 142 9.628500 ATGAGCAGATGCATATATATGACAAAT 57.372 29.630 24.06 12.03 45.16 2.32
142 143 8.889717 TGAGCAGATGCATATATATGACAAATG 58.110 33.333 24.06 20.32 45.16 2.32
143 144 8.803397 AGCAGATGCATATATATGACAAATGT 57.197 30.769 24.06 8.76 45.16 2.71
144 145 9.239551 AGCAGATGCATATATATGACAAATGTT 57.760 29.630 24.06 16.81 45.16 2.71
145 146 9.850628 GCAGATGCATATATATGACAAATGTTT 57.149 29.630 24.06 7.40 41.59 2.83
155 156 7.701539 ATATGACAAATGTTTCCTACAAGCA 57.298 32.000 0.00 0.00 40.89 3.91
156 157 5.437289 TGACAAATGTTTCCTACAAGCAG 57.563 39.130 0.00 0.00 40.89 4.24
157 158 4.887071 TGACAAATGTTTCCTACAAGCAGT 59.113 37.500 0.00 0.00 40.89 4.40
158 159 5.186996 ACAAATGTTTCCTACAAGCAGTG 57.813 39.130 0.00 0.00 40.89 3.66
159 160 4.037923 ACAAATGTTTCCTACAAGCAGTGG 59.962 41.667 0.00 0.00 40.89 4.00
160 161 3.508845 ATGTTTCCTACAAGCAGTGGT 57.491 42.857 0.00 0.00 40.89 4.16
161 162 4.634012 ATGTTTCCTACAAGCAGTGGTA 57.366 40.909 0.00 0.00 40.89 3.25
162 163 4.002906 TGTTTCCTACAAGCAGTGGTAG 57.997 45.455 0.00 0.00 37.36 3.18
163 164 3.389983 TGTTTCCTACAAGCAGTGGTAGT 59.610 43.478 0.00 0.00 36.17 2.73
164 165 4.141574 TGTTTCCTACAAGCAGTGGTAGTT 60.142 41.667 0.00 0.00 36.17 2.24
165 166 5.070714 TGTTTCCTACAAGCAGTGGTAGTTA 59.929 40.000 0.00 0.00 36.17 2.24
166 167 4.796038 TCCTACAAGCAGTGGTAGTTAC 57.204 45.455 0.00 0.00 36.17 2.50
167 168 3.512724 TCCTACAAGCAGTGGTAGTTACC 59.487 47.826 0.00 1.25 46.62 2.85
177 178 1.435577 GGTAGTTACCACCACTTGCG 58.564 55.000 3.45 0.00 45.73 4.85
178 179 1.270465 GGTAGTTACCACCACTTGCGT 60.270 52.381 3.45 0.00 45.73 5.24
179 180 2.486918 GTAGTTACCACCACTTGCGTT 58.513 47.619 0.00 0.00 0.00 4.84
180 181 2.047002 AGTTACCACCACTTGCGTTT 57.953 45.000 0.00 0.00 0.00 3.60
181 182 2.371306 AGTTACCACCACTTGCGTTTT 58.629 42.857 0.00 0.00 0.00 2.43
182 183 2.098443 AGTTACCACCACTTGCGTTTTG 59.902 45.455 0.00 0.00 0.00 2.44
183 184 1.752683 TACCACCACTTGCGTTTTGT 58.247 45.000 0.00 0.00 0.00 2.83
184 185 1.752683 ACCACCACTTGCGTTTTGTA 58.247 45.000 0.00 0.00 0.00 2.41
185 186 2.303175 ACCACCACTTGCGTTTTGTAT 58.697 42.857 0.00 0.00 0.00 2.29
186 187 2.034053 ACCACCACTTGCGTTTTGTATG 59.966 45.455 0.00 0.00 0.00 2.39
187 188 2.034053 CCACCACTTGCGTTTTGTATGT 59.966 45.455 0.00 0.00 0.00 2.29
188 189 3.490078 CCACCACTTGCGTTTTGTATGTT 60.490 43.478 0.00 0.00 0.00 2.71
189 190 3.485378 CACCACTTGCGTTTTGTATGTTG 59.515 43.478 0.00 0.00 0.00 3.33
190 191 3.129638 ACCACTTGCGTTTTGTATGTTGT 59.870 39.130 0.00 0.00 0.00 3.32
191 192 4.335874 ACCACTTGCGTTTTGTATGTTGTA 59.664 37.500 0.00 0.00 0.00 2.41
192 193 5.009210 ACCACTTGCGTTTTGTATGTTGTAT 59.991 36.000 0.00 0.00 0.00 2.29
193 194 5.341993 CCACTTGCGTTTTGTATGTTGTATG 59.658 40.000 0.00 0.00 0.00 2.39
194 195 5.912396 CACTTGCGTTTTGTATGTTGTATGT 59.088 36.000 0.00 0.00 0.00 2.29
195 196 7.072647 CACTTGCGTTTTGTATGTTGTATGTA 58.927 34.615 0.00 0.00 0.00 2.29
196 197 7.268235 CACTTGCGTTTTGTATGTTGTATGTAG 59.732 37.037 0.00 0.00 0.00 2.74
197 198 6.788684 TGCGTTTTGTATGTTGTATGTAGT 57.211 33.333 0.00 0.00 0.00 2.73
198 199 7.886405 TGCGTTTTGTATGTTGTATGTAGTA 57.114 32.000 0.00 0.00 0.00 1.82
199 200 8.481974 TGCGTTTTGTATGTTGTATGTAGTAT 57.518 30.769 0.00 0.00 0.00 2.12
200 201 8.597227 TGCGTTTTGTATGTTGTATGTAGTATC 58.403 33.333 0.00 0.00 0.00 2.24
201 202 8.814235 GCGTTTTGTATGTTGTATGTAGTATCT 58.186 33.333 0.00 0.00 0.00 1.98
203 204 9.916397 GTTTTGTATGTTGTATGTAGTATCTGC 57.084 33.333 0.00 0.00 0.00 4.26
204 205 8.657074 TTTGTATGTTGTATGTAGTATCTGCC 57.343 34.615 0.00 0.00 0.00 4.85
205 206 6.443792 TGTATGTTGTATGTAGTATCTGCCG 58.556 40.000 0.00 0.00 0.00 5.69
206 207 4.316205 TGTTGTATGTAGTATCTGCCGG 57.684 45.455 0.00 0.00 0.00 6.13
207 208 3.955551 TGTTGTATGTAGTATCTGCCGGA 59.044 43.478 5.05 0.00 0.00 5.14
208 209 4.403113 TGTTGTATGTAGTATCTGCCGGAA 59.597 41.667 5.05 0.00 0.00 4.30
209 210 4.579454 TGTATGTAGTATCTGCCGGAAC 57.421 45.455 5.05 0.00 0.00 3.62
210 211 3.319972 TGTATGTAGTATCTGCCGGAACC 59.680 47.826 5.05 0.00 0.00 3.62
211 212 0.742505 TGTAGTATCTGCCGGAACCG 59.257 55.000 5.05 6.25 39.44 4.44
212 213 1.027357 GTAGTATCTGCCGGAACCGA 58.973 55.000 15.07 0.00 42.83 4.69
213 214 1.001597 GTAGTATCTGCCGGAACCGAG 60.002 57.143 15.07 5.29 42.83 4.63
214 215 0.395311 AGTATCTGCCGGAACCGAGA 60.395 55.000 15.07 10.55 42.83 4.04
215 216 0.030908 GTATCTGCCGGAACCGAGAG 59.969 60.000 15.07 9.52 42.83 3.20
216 217 0.395311 TATCTGCCGGAACCGAGAGT 60.395 55.000 15.07 4.20 42.83 3.24
217 218 0.395311 ATCTGCCGGAACCGAGAGTA 60.395 55.000 15.07 0.00 42.83 2.59
218 219 0.395311 TCTGCCGGAACCGAGAGTAT 60.395 55.000 15.07 0.00 42.83 2.12
219 220 0.249073 CTGCCGGAACCGAGAGTATG 60.249 60.000 15.07 0.00 42.83 2.39
220 221 0.968901 TGCCGGAACCGAGAGTATGT 60.969 55.000 15.07 0.00 42.83 2.29
221 222 1.027357 GCCGGAACCGAGAGTATGTA 58.973 55.000 15.07 0.00 42.83 2.29
222 223 1.268948 GCCGGAACCGAGAGTATGTAC 60.269 57.143 15.07 0.00 42.83 2.90
223 224 1.003116 CCGGAACCGAGAGTATGTACG 60.003 57.143 15.07 0.00 42.83 3.67
224 225 1.667724 CGGAACCGAGAGTATGTACGT 59.332 52.381 7.53 0.00 42.83 3.57
225 226 2.538333 CGGAACCGAGAGTATGTACGTG 60.538 54.545 7.53 0.00 42.83 4.49
226 227 2.421424 GGAACCGAGAGTATGTACGTGT 59.579 50.000 0.00 0.00 0.00 4.49
227 228 3.623060 GGAACCGAGAGTATGTACGTGTA 59.377 47.826 0.00 0.00 0.00 2.90
228 229 4.494855 GGAACCGAGAGTATGTACGTGTAC 60.495 50.000 0.00 3.21 36.63 2.90
229 230 3.866651 ACCGAGAGTATGTACGTGTACT 58.133 45.455 11.14 3.97 37.00 2.73
230 231 5.011090 ACCGAGAGTATGTACGTGTACTA 57.989 43.478 11.14 0.00 37.00 1.82
231 232 5.605534 ACCGAGAGTATGTACGTGTACTAT 58.394 41.667 11.14 1.25 37.00 2.12
232 233 5.464722 ACCGAGAGTATGTACGTGTACTATG 59.535 44.000 11.14 0.00 37.00 2.23
233 234 5.464722 CCGAGAGTATGTACGTGTACTATGT 59.535 44.000 11.14 0.00 37.00 2.29
234 235 6.642540 CCGAGAGTATGTACGTGTACTATGTA 59.357 42.308 11.14 0.00 37.00 2.29
235 236 7.148836 CCGAGAGTATGTACGTGTACTATGTAG 60.149 44.444 11.14 0.00 37.00 2.74
236 237 7.380870 CGAGAGTATGTACGTGTACTATGTAGT 59.619 40.741 11.14 0.00 40.24 2.73
237 238 9.684448 GAGAGTATGTACGTGTACTATGTAGTA 57.316 37.037 11.14 0.00 37.73 1.82
318 319 7.892778 TGAGTATGCTCATTTTTACGTACAA 57.107 32.000 9.69 0.00 45.94 2.41
319 320 8.312896 TGAGTATGCTCATTTTTACGTACAAA 57.687 30.769 9.69 9.18 45.94 2.83
320 321 8.941977 TGAGTATGCTCATTTTTACGTACAAAT 58.058 29.630 9.69 12.75 45.94 2.32
366 367 6.513806 ACAAAAACTATGTGCTCATATGCA 57.486 33.333 8.82 0.00 41.05 3.96
367 368 6.923012 ACAAAAACTATGTGCTCATATGCAA 58.077 32.000 8.82 0.00 45.12 4.08
368 369 7.549839 ACAAAAACTATGTGCTCATATGCAAT 58.450 30.769 8.82 0.00 45.12 3.56
369 370 8.036575 ACAAAAACTATGTGCTCATATGCAATT 58.963 29.630 8.82 0.18 45.12 2.32
370 371 8.875803 CAAAAACTATGTGCTCATATGCAATTT 58.124 29.630 8.82 4.79 45.12 1.82
371 372 9.439500 AAAAACTATGTGCTCATATGCAATTTT 57.561 25.926 8.82 9.03 45.12 1.82
372 373 9.439500 AAAACTATGTGCTCATATGCAATTTTT 57.561 25.926 8.82 1.14 45.12 1.94
476 477 6.997655 CCACATGGTAGTATATGAGACATGT 58.002 40.000 0.00 0.00 45.67 3.21
477 478 8.122472 CCACATGGTAGTATATGAGACATGTA 57.878 38.462 0.00 0.00 43.72 2.29
478 479 8.246871 CCACATGGTAGTATATGAGACATGTAG 58.753 40.741 0.00 0.00 43.72 2.74
479 480 8.246871 CACATGGTAGTATATGAGACATGTAGG 58.753 40.741 0.00 0.00 43.72 3.18
480 481 7.397476 ACATGGTAGTATATGAGACATGTAGGG 59.603 40.741 0.00 0.00 43.73 3.53
481 482 6.860034 TGGTAGTATATGAGACATGTAGGGT 58.140 40.000 0.00 0.00 0.00 4.34
482 483 7.992295 TGGTAGTATATGAGACATGTAGGGTA 58.008 38.462 0.00 0.00 0.00 3.69
483 484 8.450434 TGGTAGTATATGAGACATGTAGGGTAA 58.550 37.037 0.00 0.00 0.00 2.85
484 485 8.738106 GGTAGTATATGAGACATGTAGGGTAAC 58.262 40.741 0.00 0.00 0.00 2.50
485 486 9.517868 GTAGTATATGAGACATGTAGGGTAACT 57.482 37.037 0.00 0.48 0.00 2.24
507 508 4.313523 CCGGGTGGTAGGATGGAT 57.686 61.111 0.00 0.00 0.00 3.41
508 509 2.539983 CCGGGTGGTAGGATGGATT 58.460 57.895 0.00 0.00 0.00 3.01
509 510 0.843984 CCGGGTGGTAGGATGGATTT 59.156 55.000 0.00 0.00 0.00 2.17
510 511 1.214424 CCGGGTGGTAGGATGGATTTT 59.786 52.381 0.00 0.00 0.00 1.82
511 512 2.572290 CGGGTGGTAGGATGGATTTTC 58.428 52.381 0.00 0.00 0.00 2.29
512 513 2.748465 CGGGTGGTAGGATGGATTTTCC 60.748 54.545 0.00 0.00 36.96 3.13
513 514 2.424379 GGGTGGTAGGATGGATTTTCCC 60.424 54.545 0.00 0.00 35.03 3.97
514 515 2.514160 GGTGGTAGGATGGATTTTCCCT 59.486 50.000 0.00 0.00 35.03 4.20
515 516 3.720002 GGTGGTAGGATGGATTTTCCCTA 59.280 47.826 0.00 0.00 35.03 3.53
516 517 4.354087 GGTGGTAGGATGGATTTTCCCTAT 59.646 45.833 0.00 0.00 35.03 2.57
517 518 5.550403 GGTGGTAGGATGGATTTTCCCTATA 59.450 44.000 0.00 0.00 35.03 1.31
518 519 6.217693 GGTGGTAGGATGGATTTTCCCTATAT 59.782 42.308 0.00 0.00 35.03 0.86
519 520 7.404980 GGTGGTAGGATGGATTTTCCCTATATA 59.595 40.741 0.00 0.00 35.03 0.86
520 521 9.004231 GTGGTAGGATGGATTTTCCCTATATAT 57.996 37.037 0.00 0.00 35.03 0.86
675 676 0.391597 CATCATGCTCAAATGGGCCC 59.608 55.000 17.59 17.59 0.00 5.80
687 688 0.609131 ATGGGCCCGAAGACACAAAG 60.609 55.000 19.37 0.00 0.00 2.77
696 697 1.326548 GAAGACACAAAGCACGTCGTT 59.673 47.619 0.00 0.00 34.80 3.85
760 761 8.446714 AGGATTGTATGAGGTGATCAATAGAT 57.553 34.615 0.00 0.00 42.53 1.98
774 775 6.893958 ATCAATAGATCTTGTGTTGTCGAC 57.106 37.500 9.11 9.11 0.00 4.20
778 779 0.391597 ATCTTGTGTTGTCGACCGGT 59.608 50.000 6.92 6.92 0.00 5.28
849 858 1.639298 GGACTCCAAGACGCACATGC 61.639 60.000 0.00 0.00 37.78 4.06
941 975 3.434641 AGATGCACATCAAAGACGAACTG 59.565 43.478 12.87 0.00 40.22 3.16
1164 1200 6.658188 ACAACAGAAGAACTAGCTCTAAGT 57.342 37.500 0.00 0.00 0.00 2.24
1217 1256 4.257731 TGCAATCGCCTTATTGTCAACTA 58.742 39.130 0.00 0.00 38.78 2.24
1220 1259 5.207768 CAATCGCCTTATTGTCAACTATGC 58.792 41.667 0.00 0.00 33.11 3.14
1223 1262 5.853936 TCGCCTTATTGTCAACTATGCTAT 58.146 37.500 0.00 0.00 0.00 2.97
1315 1362 7.822161 ACTGCTATTTTATGGCATGTGATTA 57.178 32.000 10.98 0.00 45.88 1.75
1362 1409 9.791801 ATTGTAATTTGGAAGCAAATAAGGTTT 57.208 25.926 0.00 0.00 34.06 3.27
1379 1426 4.006319 AGGTTTCTCATGAACTTGCTAGC 58.994 43.478 8.10 8.10 31.02 3.42
1623 1675 6.380846 CCATTTGATCTTCCCCAACTTCAATA 59.619 38.462 0.00 0.00 0.00 1.90
1691 1770 6.540914 GGCTGCCTACACTATAATTTGTAACA 59.459 38.462 12.43 0.00 0.00 2.41
1760 1840 7.910162 CCACAACAATAGATTGGATTAGAAACG 59.090 37.037 7.16 0.00 41.96 3.60
1861 1943 4.398358 TGGTGTCAACAATTACGTTTCCAA 59.602 37.500 0.00 0.00 0.00 3.53
1938 2020 6.554605 GGGATTTAGGGGATGATTCAATGAAA 59.445 38.462 0.00 0.00 0.00 2.69
2004 2092 4.355543 TTCAATTTACAGGCGCAATCTC 57.644 40.909 10.83 0.00 0.00 2.75
2023 2111 7.678927 GCAATCTCGTAGGGTTTAAGAATTTCC 60.679 40.741 0.00 0.00 0.00 3.13
2024 2112 5.413499 TCTCGTAGGGTTTAAGAATTTCCG 58.587 41.667 0.00 0.00 0.00 4.30
2028 2116 5.813672 CGTAGGGTTTAAGAATTTCCGATGA 59.186 40.000 0.00 0.00 0.00 2.92
2029 2117 6.482308 CGTAGGGTTTAAGAATTTCCGATGAT 59.518 38.462 0.00 0.00 0.00 2.45
2030 2118 6.944234 AGGGTTTAAGAATTTCCGATGATC 57.056 37.500 0.00 0.00 0.00 2.92
2031 2119 5.527582 AGGGTTTAAGAATTTCCGATGATCG 59.472 40.000 8.05 8.05 40.07 3.69
2096 2185 1.372087 CCGGTGGAGCATCTGAAAGC 61.372 60.000 0.00 0.00 33.73 3.51
2116 2205 1.338674 CGGGGTGCATTTGAGTAGTGA 60.339 52.381 0.00 0.00 0.00 3.41
2138 2227 1.997874 GGGAGGGAGGCACTGATGT 60.998 63.158 0.00 0.00 41.55 3.06
2166 2255 4.227134 CCGGCGGCTGAGCTATGT 62.227 66.667 15.42 0.00 37.29 2.29
2171 2260 2.735772 CGGCTGAGCTATGTGGGGT 61.736 63.158 3.72 0.00 0.00 4.95
2178 2267 1.451387 GCTATGTGGGGTTGGTCGG 60.451 63.158 0.00 0.00 0.00 4.79
2201 2290 1.334149 GCGATTCCTATTTGGCGCTTC 60.334 52.381 7.64 0.00 40.21 3.86
2203 2292 2.032549 CGATTCCTATTTGGCGCTTCAG 60.033 50.000 7.64 0.00 35.26 3.02
2205 2294 0.748005 TCCTATTTGGCGCTTCAGGC 60.748 55.000 7.64 0.00 35.26 4.85
2224 2313 3.384467 AGGCGCCTGTTTATATGCATTTT 59.616 39.130 32.33 0.00 0.00 1.82
2226 2315 3.060339 GCGCCTGTTTATATGCATTTTGC 60.060 43.478 3.54 0.00 45.29 3.68
2238 2327 2.866726 ATTTTGCAAACGGGCGCCT 61.867 52.632 28.56 3.74 36.28 5.52
2239 2328 3.781770 TTTTGCAAACGGGCGCCTG 62.782 57.895 33.73 33.73 36.28 4.85
2246 2335 3.792712 AACGGGCGCCTGTTTATAT 57.207 47.368 41.38 24.38 42.27 0.86
2247 2336 1.305201 AACGGGCGCCTGTTTATATG 58.695 50.000 41.38 16.09 42.27 1.78
2248 2337 1.164041 ACGGGCGCCTGTTTATATGC 61.164 55.000 35.33 8.61 30.14 3.14
2249 2338 1.163420 CGGGCGCCTGTTTATATGCA 61.163 55.000 27.83 0.00 0.00 3.96
2250 2339 1.247567 GGGCGCCTGTTTATATGCAT 58.752 50.000 28.56 3.79 0.00 3.96
2251 2340 1.613437 GGGCGCCTGTTTATATGCATT 59.387 47.619 28.56 0.00 0.00 3.56
2252 2341 2.035832 GGGCGCCTGTTTATATGCATTT 59.964 45.455 28.56 0.00 0.00 2.32
2253 2342 3.492482 GGGCGCCTGTTTATATGCATTTT 60.492 43.478 28.56 0.00 0.00 1.82
2254 2343 3.490526 GGCGCCTGTTTATATGCATTTTG 59.509 43.478 22.15 0.00 0.00 2.44
2255 2344 3.060339 GCGCCTGTTTATATGCATTTTGC 60.060 43.478 3.54 0.00 45.29 3.68
2264 2353 2.852507 GCATTTTGCAAACGGGCG 59.147 55.556 12.39 0.00 44.26 6.13
2265 2354 2.852507 CATTTTGCAAACGGGCGC 59.147 55.556 12.39 0.00 36.28 6.53
2266 2355 2.356913 ATTTTGCAAACGGGCGCC 60.357 55.556 21.18 21.18 36.28 6.53
2267 2356 2.866726 ATTTTGCAAACGGGCGCCT 61.867 52.632 28.56 3.74 36.28 5.52
2268 2357 3.781770 TTTTGCAAACGGGCGCCTG 62.782 57.895 33.73 33.73 36.28 4.85
2271 2360 4.404654 GCAAACGGGCGCCTGAAG 62.405 66.667 41.14 27.79 0.00 3.02
2272 2361 3.737172 CAAACGGGCGCCTGAAGG 61.737 66.667 41.14 23.88 38.53 3.46
2273 2362 4.265056 AAACGGGCGCCTGAAGGT 62.265 61.111 41.14 16.99 37.57 3.50
2274 2363 4.699522 AACGGGCGCCTGAAGGTC 62.700 66.667 41.14 14.72 37.57 3.85
2277 2366 4.475135 GGGCGCCTGAAGGTCCTC 62.475 72.222 28.56 0.41 37.57 3.71
2278 2367 4.475135 GGCGCCTGAAGGTCCTCC 62.475 72.222 22.15 0.00 37.57 4.30
2279 2368 4.821589 GCGCCTGAAGGTCCTCCG 62.822 72.222 0.00 0.00 39.05 4.63
2280 2369 3.382832 CGCCTGAAGGTCCTCCGT 61.383 66.667 0.00 0.00 39.05 4.69
2281 2370 2.266055 GCCTGAAGGTCCTCCGTG 59.734 66.667 0.00 0.00 39.05 4.94
2282 2371 2.266055 CCTGAAGGTCCTCCGTGC 59.734 66.667 0.00 0.00 39.05 5.34
2283 2372 2.286523 CCTGAAGGTCCTCCGTGCT 61.287 63.158 0.00 0.00 39.05 4.40
2284 2373 1.079543 CTGAAGGTCCTCCGTGCTG 60.080 63.158 0.00 0.00 39.05 4.41
2285 2374 2.266055 GAAGGTCCTCCGTGCTGG 59.734 66.667 0.00 0.00 39.05 4.85
2286 2375 3.316573 GAAGGTCCTCCGTGCTGGG 62.317 68.421 0.00 0.00 38.76 4.45
2302 2391 4.137615 GGCCGGCCCAATTACCCT 62.138 66.667 36.64 0.00 0.00 4.34
2303 2392 2.043349 GCCGGCCCAATTACCCTT 60.043 61.111 18.11 0.00 0.00 3.95
2304 2393 1.227946 GCCGGCCCAATTACCCTTA 59.772 57.895 18.11 0.00 0.00 2.69
2305 2394 0.178973 GCCGGCCCAATTACCCTTAT 60.179 55.000 18.11 0.00 0.00 1.73
2306 2395 1.905637 CCGGCCCAATTACCCTTATC 58.094 55.000 0.00 0.00 0.00 1.75
2307 2396 1.423921 CCGGCCCAATTACCCTTATCT 59.576 52.381 0.00 0.00 0.00 1.98
2308 2397 2.640826 CCGGCCCAATTACCCTTATCTA 59.359 50.000 0.00 0.00 0.00 1.98
2309 2398 3.265995 CCGGCCCAATTACCCTTATCTAT 59.734 47.826 0.00 0.00 0.00 1.98
2310 2399 4.263771 CCGGCCCAATTACCCTTATCTATT 60.264 45.833 0.00 0.00 0.00 1.73
2311 2400 5.321927 CGGCCCAATTACCCTTATCTATTT 58.678 41.667 0.00 0.00 0.00 1.40
2312 2401 5.773176 CGGCCCAATTACCCTTATCTATTTT 59.227 40.000 0.00 0.00 0.00 1.82
2313 2402 6.266786 CGGCCCAATTACCCTTATCTATTTTT 59.733 38.462 0.00 0.00 0.00 1.94
2346 2435 7.385668 CAAAAAGTGCACTTGTAGAGAATTG 57.614 36.000 31.73 15.77 36.12 2.32
2347 2436 6.942532 AAAAGTGCACTTGTAGAGAATTGA 57.057 33.333 31.73 0.00 36.12 2.57
2348 2437 6.942532 AAAGTGCACTTGTAGAGAATTGAA 57.057 33.333 31.73 0.00 36.12 2.69
2349 2438 5.931441 AGTGCACTTGTAGAGAATTGAAC 57.069 39.130 15.25 0.00 0.00 3.18
2350 2439 4.757149 AGTGCACTTGTAGAGAATTGAACC 59.243 41.667 15.25 0.00 0.00 3.62
2351 2440 3.745975 TGCACTTGTAGAGAATTGAACCG 59.254 43.478 0.00 0.00 0.00 4.44
2352 2441 3.125316 GCACTTGTAGAGAATTGAACCGG 59.875 47.826 0.00 0.00 0.00 5.28
2353 2442 4.315803 CACTTGTAGAGAATTGAACCGGT 58.684 43.478 0.00 0.00 0.00 5.28
2354 2443 4.152402 CACTTGTAGAGAATTGAACCGGTG 59.848 45.833 8.52 0.00 0.00 4.94
2355 2444 4.039973 ACTTGTAGAGAATTGAACCGGTGA 59.960 41.667 8.52 0.00 0.00 4.02
2356 2445 3.921677 TGTAGAGAATTGAACCGGTGAC 58.078 45.455 8.52 6.46 0.00 3.67
2357 2446 2.474410 AGAGAATTGAACCGGTGACC 57.526 50.000 8.52 0.57 0.00 4.02
2358 2447 1.978580 AGAGAATTGAACCGGTGACCT 59.021 47.619 8.52 0.00 0.00 3.85
2359 2448 2.028020 AGAGAATTGAACCGGTGACCTC 60.028 50.000 8.52 9.55 0.00 3.85
2360 2449 1.978580 AGAATTGAACCGGTGACCTCT 59.021 47.619 8.52 4.09 0.00 3.69
2361 2450 2.028020 AGAATTGAACCGGTGACCTCTC 60.028 50.000 8.52 0.05 0.00 3.20
2362 2451 0.246635 ATTGAACCGGTGACCTCTCG 59.753 55.000 8.52 0.00 0.00 4.04
2363 2452 2.126031 GAACCGGTGACCTCTCGC 60.126 66.667 8.52 0.00 0.00 5.03
2364 2453 2.600769 AACCGGTGACCTCTCGCT 60.601 61.111 8.52 0.00 0.00 4.93
2365 2454 2.156051 GAACCGGTGACCTCTCGCTT 62.156 60.000 8.52 0.00 0.00 4.68
2366 2455 2.156051 AACCGGTGACCTCTCGCTTC 62.156 60.000 8.52 0.00 0.00 3.86
2367 2456 2.202492 CGGTGACCTCTCGCTTCG 60.202 66.667 0.00 0.00 0.00 3.79
2368 2457 2.687805 CGGTGACCTCTCGCTTCGA 61.688 63.158 0.00 0.00 0.00 3.71
2369 2458 1.153997 GGTGACCTCTCGCTTCGAC 60.154 63.158 0.00 0.00 0.00 4.20
2370 2459 1.579932 GTGACCTCTCGCTTCGACA 59.420 57.895 0.00 0.00 0.00 4.35
2371 2460 0.455295 GTGACCTCTCGCTTCGACAG 60.455 60.000 0.00 0.00 0.00 3.51
2372 2461 0.605589 TGACCTCTCGCTTCGACAGA 60.606 55.000 0.00 0.00 0.00 3.41
2373 2462 0.736053 GACCTCTCGCTTCGACAGAT 59.264 55.000 0.00 0.00 0.00 2.90
2374 2463 0.453793 ACCTCTCGCTTCGACAGATG 59.546 55.000 0.00 0.00 0.00 2.90
2375 2464 0.453793 CCTCTCGCTTCGACAGATGT 59.546 55.000 0.00 0.00 0.00 3.06
2376 2465 1.135257 CCTCTCGCTTCGACAGATGTT 60.135 52.381 0.00 0.00 0.00 2.71
2377 2466 1.916651 CTCTCGCTTCGACAGATGTTG 59.083 52.381 0.00 0.00 0.00 3.33
2378 2467 0.368227 CTCGCTTCGACAGATGTTGC 59.632 55.000 0.00 0.00 0.00 4.17
2379 2468 0.319469 TCGCTTCGACAGATGTTGCA 60.319 50.000 0.00 0.00 0.00 4.08
2380 2469 0.179240 CGCTTCGACAGATGTTGCAC 60.179 55.000 0.00 0.00 0.00 4.57
2381 2470 1.151668 GCTTCGACAGATGTTGCACT 58.848 50.000 0.00 0.00 0.00 4.40
2382 2471 2.337583 GCTTCGACAGATGTTGCACTA 58.662 47.619 0.00 0.00 0.00 2.74
2383 2472 2.736721 GCTTCGACAGATGTTGCACTAA 59.263 45.455 0.00 0.00 0.00 2.24
2384 2473 3.423645 GCTTCGACAGATGTTGCACTAAC 60.424 47.826 0.00 0.00 39.80 2.34
2385 2474 2.683968 TCGACAGATGTTGCACTAACC 58.316 47.619 0.00 0.00 38.55 2.85
2386 2475 2.036604 TCGACAGATGTTGCACTAACCA 59.963 45.455 0.00 0.00 38.55 3.67
2387 2476 2.157668 CGACAGATGTTGCACTAACCAC 59.842 50.000 0.00 0.00 38.55 4.16
2388 2477 3.138304 GACAGATGTTGCACTAACCACA 58.862 45.455 0.00 0.00 38.55 4.17
2389 2478 3.550820 ACAGATGTTGCACTAACCACAA 58.449 40.909 0.00 0.00 38.55 3.33
2390 2479 3.565482 ACAGATGTTGCACTAACCACAAG 59.435 43.478 0.00 0.00 38.55 3.16
2391 2480 3.058016 CAGATGTTGCACTAACCACAAGG 60.058 47.826 0.00 0.00 38.55 3.61
2392 2481 1.028905 TGTTGCACTAACCACAAGGC 58.971 50.000 0.00 0.00 38.55 4.35
2393 2482 0.313987 GTTGCACTAACCACAAGGCC 59.686 55.000 0.00 0.00 39.06 5.19
2394 2483 0.106469 TTGCACTAACCACAAGGCCA 60.106 50.000 5.01 0.00 39.06 5.36
2395 2484 0.821711 TGCACTAACCACAAGGCCAC 60.822 55.000 5.01 0.00 39.06 5.01
2396 2485 0.537371 GCACTAACCACAAGGCCACT 60.537 55.000 5.01 0.00 39.06 4.00
2397 2486 1.981256 CACTAACCACAAGGCCACTT 58.019 50.000 5.01 0.00 39.06 3.16
2398 2487 1.880027 CACTAACCACAAGGCCACTTC 59.120 52.381 5.01 0.00 39.06 3.01
2399 2488 1.493022 ACTAACCACAAGGCCACTTCA 59.507 47.619 5.01 0.00 39.06 3.02
2400 2489 1.880027 CTAACCACAAGGCCACTTCAC 59.120 52.381 5.01 0.00 39.06 3.18
2401 2490 0.755327 AACCACAAGGCCACTTCACC 60.755 55.000 5.01 0.00 39.06 4.02
2402 2491 1.151450 CCACAAGGCCACTTCACCT 59.849 57.895 5.01 0.00 38.14 4.00
2403 2492 1.174712 CCACAAGGCCACTTCACCTG 61.175 60.000 5.01 0.00 36.07 4.00
2404 2493 0.179020 CACAAGGCCACTTCACCTGA 60.179 55.000 5.01 0.00 36.07 3.86
2405 2494 0.179018 ACAAGGCCACTTCACCTGAC 60.179 55.000 5.01 0.00 36.07 3.51
2406 2495 0.890996 CAAGGCCACTTCACCTGACC 60.891 60.000 5.01 0.00 36.07 4.02
2407 2496 1.062488 AAGGCCACTTCACCTGACCT 61.062 55.000 5.01 0.00 36.07 3.85
2408 2497 1.302832 GGCCACTTCACCTGACCTG 60.303 63.158 0.00 0.00 0.00 4.00
2409 2498 1.302832 GCCACTTCACCTGACCTGG 60.303 63.158 0.00 0.00 0.00 4.45
2410 2499 2.056906 GCCACTTCACCTGACCTGGT 62.057 60.000 0.00 0.00 41.77 4.00
2411 2500 1.348064 CCACTTCACCTGACCTGGTA 58.652 55.000 0.00 0.00 38.45 3.25
2412 2501 1.697432 CCACTTCACCTGACCTGGTAA 59.303 52.381 0.00 0.00 38.45 2.85
2413 2502 2.105821 CCACTTCACCTGACCTGGTAAA 59.894 50.000 0.00 0.00 38.45 2.01
2414 2503 3.244911 CCACTTCACCTGACCTGGTAAAT 60.245 47.826 0.00 0.00 38.45 1.40
2415 2504 4.398319 CACTTCACCTGACCTGGTAAATT 58.602 43.478 0.00 0.00 38.45 1.82
2416 2505 4.216257 CACTTCACCTGACCTGGTAAATTG 59.784 45.833 0.00 0.00 38.45 2.32
2417 2506 2.790433 TCACCTGACCTGGTAAATTGC 58.210 47.619 0.00 0.00 38.45 3.56
2418 2507 2.107378 TCACCTGACCTGGTAAATTGCA 59.893 45.455 0.00 0.00 38.45 4.08
2419 2508 2.890311 CACCTGACCTGGTAAATTGCAA 59.110 45.455 0.00 0.00 38.45 4.08
2420 2509 2.890945 ACCTGACCTGGTAAATTGCAAC 59.109 45.455 0.00 0.00 38.79 4.17
2421 2510 3.157087 CCTGACCTGGTAAATTGCAACT 58.843 45.455 0.00 0.00 0.00 3.16
2422 2511 3.191371 CCTGACCTGGTAAATTGCAACTC 59.809 47.826 0.00 0.00 0.00 3.01
2423 2512 4.074970 CTGACCTGGTAAATTGCAACTCT 58.925 43.478 0.00 0.00 0.00 3.24
2424 2513 4.469657 TGACCTGGTAAATTGCAACTCTT 58.530 39.130 0.00 0.00 0.00 2.85
2425 2514 4.892934 TGACCTGGTAAATTGCAACTCTTT 59.107 37.500 0.00 0.94 0.00 2.52
2426 2515 5.362430 TGACCTGGTAAATTGCAACTCTTTT 59.638 36.000 0.00 0.52 0.00 2.27
2427 2516 5.600696 ACCTGGTAAATTGCAACTCTTTTG 58.399 37.500 0.00 0.00 0.00 2.44
2428 2517 5.128663 ACCTGGTAAATTGCAACTCTTTTGT 59.871 36.000 0.00 0.00 0.00 2.83
2429 2518 6.322712 ACCTGGTAAATTGCAACTCTTTTGTA 59.677 34.615 0.00 0.00 0.00 2.41
2430 2519 7.015195 ACCTGGTAAATTGCAACTCTTTTGTAT 59.985 33.333 0.00 0.00 0.00 2.29
2431 2520 7.872483 CCTGGTAAATTGCAACTCTTTTGTATT 59.128 33.333 0.00 0.00 0.00 1.89
2432 2521 9.260002 CTGGTAAATTGCAACTCTTTTGTATTT 57.740 29.630 0.00 0.00 0.00 1.40
2433 2522 9.606631 TGGTAAATTGCAACTCTTTTGTATTTT 57.393 25.926 0.00 0.00 0.00 1.82
2438 2527 9.822185 AATTGCAACTCTTTTGTATTTTCTTCT 57.178 25.926 0.00 0.00 0.00 2.85
2439 2528 9.822185 ATTGCAACTCTTTTGTATTTTCTTCTT 57.178 25.926 0.00 0.00 0.00 2.52
2440 2529 9.651913 TTGCAACTCTTTTGTATTTTCTTCTTT 57.348 25.926 0.00 0.00 0.00 2.52
2441 2530 9.086336 TGCAACTCTTTTGTATTTTCTTCTTTG 57.914 29.630 0.00 0.00 0.00 2.77
2442 2531 9.087424 GCAACTCTTTTGTATTTTCTTCTTTGT 57.913 29.630 0.00 0.00 0.00 2.83
2456 2545 8.771920 TTTCTTCTTTGTTTTCTCCTTTTTCC 57.228 30.769 0.00 0.00 0.00 3.13
2457 2546 7.718334 TCTTCTTTGTTTTCTCCTTTTTCCT 57.282 32.000 0.00 0.00 0.00 3.36
2458 2547 8.134202 TCTTCTTTGTTTTCTCCTTTTTCCTT 57.866 30.769 0.00 0.00 0.00 3.36
2459 2548 8.593679 TCTTCTTTGTTTTCTCCTTTTTCCTTT 58.406 29.630 0.00 0.00 0.00 3.11
2460 2549 9.219603 CTTCTTTGTTTTCTCCTTTTTCCTTTT 57.780 29.630 0.00 0.00 0.00 2.27
2461 2550 9.567776 TTCTTTGTTTTCTCCTTTTTCCTTTTT 57.432 25.926 0.00 0.00 0.00 1.94
2464 2553 8.780846 TTGTTTTCTCCTTTTTCCTTTTTACC 57.219 30.769 0.00 0.00 0.00 2.85
2465 2554 8.141298 TGTTTTCTCCTTTTTCCTTTTTACCT 57.859 30.769 0.00 0.00 0.00 3.08
2466 2555 8.598916 TGTTTTCTCCTTTTTCCTTTTTACCTT 58.401 29.630 0.00 0.00 0.00 3.50
2467 2556 9.444600 GTTTTCTCCTTTTTCCTTTTTACCTTT 57.555 29.630 0.00 0.00 0.00 3.11
2470 2559 9.661563 TTCTCCTTTTTCCTTTTTACCTTTTTC 57.338 29.630 0.00 0.00 0.00 2.29
2471 2560 8.817876 TCTCCTTTTTCCTTTTTACCTTTTTCA 58.182 29.630 0.00 0.00 0.00 2.69
2472 2561 9.613428 CTCCTTTTTCCTTTTTACCTTTTTCAT 57.387 29.630 0.00 0.00 0.00 2.57
2473 2562 9.967451 TCCTTTTTCCTTTTTACCTTTTTCATT 57.033 25.926 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 8.031864 TCAAAACATGAAAAAGTTTGTGCTCTA 58.968 29.630 0.00 0.00 37.94 2.43
79 80 8.743085 ATGAGAATTGTCGGTACTAACTAGTA 57.257 34.615 0.00 0.00 37.73 1.82
84 85 7.772332 ATCAATGAGAATTGTCGGTACTAAC 57.228 36.000 0.00 0.00 33.49 2.34
135 136 5.215160 CACTGCTTGTAGGAAACATTTGTC 58.785 41.667 0.00 0.00 38.10 3.18
136 137 4.037923 CCACTGCTTGTAGGAAACATTTGT 59.962 41.667 0.00 0.00 38.10 2.83
137 138 4.037923 ACCACTGCTTGTAGGAAACATTTG 59.962 41.667 0.00 0.00 38.10 2.32
138 139 4.215109 ACCACTGCTTGTAGGAAACATTT 58.785 39.130 0.00 0.00 38.10 2.32
139 140 3.832527 ACCACTGCTTGTAGGAAACATT 58.167 40.909 0.00 0.00 38.10 2.71
140 141 3.508845 ACCACTGCTTGTAGGAAACAT 57.491 42.857 0.00 0.00 38.10 2.71
141 142 3.389983 ACTACCACTGCTTGTAGGAAACA 59.610 43.478 0.00 0.00 38.98 2.83
142 143 4.004196 ACTACCACTGCTTGTAGGAAAC 57.996 45.455 0.00 0.00 38.98 2.78
143 144 4.699925 AACTACCACTGCTTGTAGGAAA 57.300 40.909 0.00 0.00 38.98 3.13
144 145 4.020839 GGTAACTACCACTGCTTGTAGGAA 60.021 45.833 0.80 0.00 45.73 3.36
145 146 3.512724 GGTAACTACCACTGCTTGTAGGA 59.487 47.826 0.80 0.00 45.73 2.94
146 147 3.858247 GGTAACTACCACTGCTTGTAGG 58.142 50.000 0.80 0.00 45.73 3.18
158 159 1.435577 CGCAAGTGGTGGTAACTACC 58.564 55.000 0.00 0.00 46.62 3.18
173 174 7.192148 ACTACATACAACATACAAAACGCAA 57.808 32.000 0.00 0.00 0.00 4.85
174 175 6.788684 ACTACATACAACATACAAAACGCA 57.211 33.333 0.00 0.00 0.00 5.24
175 176 8.814235 AGATACTACATACAACATACAAAACGC 58.186 33.333 0.00 0.00 0.00 4.84
177 178 9.916397 GCAGATACTACATACAACATACAAAAC 57.084 33.333 0.00 0.00 0.00 2.43
178 179 9.104965 GGCAGATACTACATACAACATACAAAA 57.895 33.333 0.00 0.00 0.00 2.44
179 180 7.436970 CGGCAGATACTACATACAACATACAAA 59.563 37.037 0.00 0.00 0.00 2.83
180 181 6.921307 CGGCAGATACTACATACAACATACAA 59.079 38.462 0.00 0.00 0.00 2.41
181 182 6.443792 CGGCAGATACTACATACAACATACA 58.556 40.000 0.00 0.00 0.00 2.29
182 183 5.862323 CCGGCAGATACTACATACAACATAC 59.138 44.000 0.00 0.00 0.00 2.39
183 184 5.771165 TCCGGCAGATACTACATACAACATA 59.229 40.000 0.00 0.00 0.00 2.29
184 185 4.587262 TCCGGCAGATACTACATACAACAT 59.413 41.667 0.00 0.00 0.00 2.71
185 186 3.955551 TCCGGCAGATACTACATACAACA 59.044 43.478 0.00 0.00 0.00 3.33
186 187 4.579454 TCCGGCAGATACTACATACAAC 57.421 45.455 0.00 0.00 0.00 3.32
187 188 4.202182 GGTTCCGGCAGATACTACATACAA 60.202 45.833 0.00 0.00 0.00 2.41
188 189 3.319972 GGTTCCGGCAGATACTACATACA 59.680 47.826 0.00 0.00 0.00 2.29
189 190 3.611057 CGGTTCCGGCAGATACTACATAC 60.611 52.174 0.00 0.00 0.00 2.39
190 191 2.555325 CGGTTCCGGCAGATACTACATA 59.445 50.000 0.00 0.00 0.00 2.29
191 192 1.340248 CGGTTCCGGCAGATACTACAT 59.660 52.381 0.00 0.00 0.00 2.29
192 193 0.742505 CGGTTCCGGCAGATACTACA 59.257 55.000 0.00 0.00 0.00 2.74
193 194 1.001597 CTCGGTTCCGGCAGATACTAC 60.002 57.143 11.37 0.00 0.00 2.73
194 195 1.134007 TCTCGGTTCCGGCAGATACTA 60.134 52.381 11.37 0.00 0.00 1.82
195 196 0.395311 TCTCGGTTCCGGCAGATACT 60.395 55.000 11.37 0.00 0.00 2.12
196 197 0.030908 CTCTCGGTTCCGGCAGATAC 59.969 60.000 11.37 0.00 0.00 2.24
197 198 0.395311 ACTCTCGGTTCCGGCAGATA 60.395 55.000 11.37 0.00 0.00 1.98
198 199 0.395311 TACTCTCGGTTCCGGCAGAT 60.395 55.000 11.37 2.16 0.00 2.90
199 200 0.395311 ATACTCTCGGTTCCGGCAGA 60.395 55.000 11.37 6.90 0.00 4.26
200 201 0.249073 CATACTCTCGGTTCCGGCAG 60.249 60.000 11.37 9.52 0.00 4.85
201 202 0.968901 ACATACTCTCGGTTCCGGCA 60.969 55.000 11.37 0.00 0.00 5.69
202 203 1.027357 TACATACTCTCGGTTCCGGC 58.973 55.000 11.37 0.00 0.00 6.13
203 204 1.003116 CGTACATACTCTCGGTTCCGG 60.003 57.143 11.37 0.00 0.00 5.14
204 205 1.667724 ACGTACATACTCTCGGTTCCG 59.332 52.381 4.74 4.74 0.00 4.30
205 206 2.421424 ACACGTACATACTCTCGGTTCC 59.579 50.000 0.00 0.00 0.00 3.62
206 207 3.754188 ACACGTACATACTCTCGGTTC 57.246 47.619 0.00 0.00 0.00 3.62
207 208 4.256920 AGTACACGTACATACTCTCGGTT 58.743 43.478 9.85 0.00 38.48 4.44
208 209 3.866651 AGTACACGTACATACTCTCGGT 58.133 45.455 9.85 0.00 38.48 4.69
209 210 5.464722 ACATAGTACACGTACATACTCTCGG 59.535 44.000 9.85 2.77 38.48 4.63
210 211 6.522233 ACATAGTACACGTACATACTCTCG 57.478 41.667 9.85 3.78 38.48 4.04
211 212 8.586570 ACTACATAGTACACGTACATACTCTC 57.413 38.462 9.85 0.00 38.48 3.20
300 301 9.976255 GTACATATTTGTACGTAAAAATGAGCA 57.024 29.630 26.93 12.38 46.32 4.26
340 341 8.685427 TGCATATGAGCACATAGTTTTTGTTAT 58.315 29.630 6.97 0.00 41.44 1.89
341 342 8.049655 TGCATATGAGCACATAGTTTTTGTTA 57.950 30.769 6.97 0.00 41.44 2.41
342 343 6.923012 TGCATATGAGCACATAGTTTTTGTT 58.077 32.000 6.97 0.00 41.44 2.83
343 344 6.513806 TGCATATGAGCACATAGTTTTTGT 57.486 33.333 6.97 0.00 41.44 2.83
344 345 7.997107 ATTGCATATGAGCACATAGTTTTTG 57.003 32.000 6.97 4.10 45.61 2.44
345 346 9.439500 AAAATTGCATATGAGCACATAGTTTTT 57.561 25.926 6.97 7.75 45.61 1.94
346 347 9.439500 AAAAATTGCATATGAGCACATAGTTTT 57.561 25.926 6.97 3.70 45.61 2.43
452 453 6.997655 ACATGTCTCATATACTACCATGTGG 58.002 40.000 0.00 0.00 42.17 4.17
453 454 8.246871 CCTACATGTCTCATATACTACCATGTG 58.753 40.741 0.00 3.61 33.55 3.21
454 455 7.397476 CCCTACATGTCTCATATACTACCATGT 59.603 40.741 0.00 0.00 35.36 3.21
455 456 7.397476 ACCCTACATGTCTCATATACTACCATG 59.603 40.741 0.00 0.00 0.00 3.66
456 457 7.479579 ACCCTACATGTCTCATATACTACCAT 58.520 38.462 0.00 0.00 0.00 3.55
457 458 6.860034 ACCCTACATGTCTCATATACTACCA 58.140 40.000 0.00 0.00 0.00 3.25
458 459 8.738106 GTTACCCTACATGTCTCATATACTACC 58.262 40.741 0.00 0.00 0.00 3.18
459 460 9.517868 AGTTACCCTACATGTCTCATATACTAC 57.482 37.037 0.00 0.00 0.00 2.73
461 462 9.517868 GTAGTTACCCTACATGTCTCATATACT 57.482 37.037 0.00 2.27 44.65 2.12
462 463 8.738106 GGTAGTTACCCTACATGTCTCATATAC 58.262 40.741 0.00 0.00 46.68 1.47
463 464 8.450434 TGGTAGTTACCCTACATGTCTCATATA 58.550 37.037 0.00 0.00 46.68 0.86
464 465 7.232941 GTGGTAGTTACCCTACATGTCTCATAT 59.767 40.741 0.00 0.00 46.68 1.78
465 466 6.548622 GTGGTAGTTACCCTACATGTCTCATA 59.451 42.308 0.00 0.00 46.68 2.15
466 467 5.363005 GTGGTAGTTACCCTACATGTCTCAT 59.637 44.000 0.00 0.00 46.68 2.90
467 468 4.708421 GTGGTAGTTACCCTACATGTCTCA 59.292 45.833 0.00 0.00 46.68 3.27
468 469 4.099113 GGTGGTAGTTACCCTACATGTCTC 59.901 50.000 0.00 0.00 46.68 3.36
469 470 4.028825 GGTGGTAGTTACCCTACATGTCT 58.971 47.826 0.00 0.00 46.68 3.41
470 471 3.181483 CGGTGGTAGTTACCCTACATGTC 60.181 52.174 0.00 0.00 46.68 3.06
471 472 2.762327 CGGTGGTAGTTACCCTACATGT 59.238 50.000 2.69 2.69 46.68 3.21
472 473 2.101917 CCGGTGGTAGTTACCCTACATG 59.898 54.545 5.90 0.00 46.68 3.21
473 474 2.391678 CCGGTGGTAGTTACCCTACAT 58.608 52.381 5.90 0.00 46.68 2.29
474 475 1.619432 CCCGGTGGTAGTTACCCTACA 60.619 57.143 0.00 0.00 46.68 2.74
475 476 1.114627 CCCGGTGGTAGTTACCCTAC 58.885 60.000 0.00 0.00 45.87 3.18
476 477 0.709992 ACCCGGTGGTAGTTACCCTA 59.290 55.000 0.00 0.00 45.45 3.53
477 478 0.906282 CACCCGGTGGTAGTTACCCT 60.906 60.000 9.99 0.00 45.57 4.34
478 479 1.598517 CACCCGGTGGTAGTTACCC 59.401 63.158 9.99 0.00 45.57 3.69
490 491 0.843984 AAATCCATCCTACCACCCGG 59.156 55.000 0.00 0.00 38.77 5.73
491 492 2.572290 GAAAATCCATCCTACCACCCG 58.428 52.381 0.00 0.00 0.00 5.28
492 493 2.424379 GGGAAAATCCATCCTACCACCC 60.424 54.545 0.00 0.00 38.64 4.61
493 494 2.514160 AGGGAAAATCCATCCTACCACC 59.486 50.000 0.00 0.00 38.64 4.61
494 495 3.953542 AGGGAAAATCCATCCTACCAC 57.046 47.619 0.00 0.00 38.64 4.16
509 510 9.816787 TGTGTGTGTGTATCTATATATAGGGAA 57.183 33.333 17.81 1.57 0.00 3.97
510 511 9.239551 GTGTGTGTGTGTATCTATATATAGGGA 57.760 37.037 17.81 5.41 0.00 4.20
511 512 9.244292 AGTGTGTGTGTGTATCTATATATAGGG 57.756 37.037 17.81 0.00 0.00 3.53
517 518 9.848710 ACTAGTAGTGTGTGTGTGTATCTATAT 57.151 33.333 0.85 0.00 0.00 0.86
519 520 9.848710 ATACTAGTAGTGTGTGTGTGTATCTAT 57.151 33.333 13.29 0.00 0.00 1.98
521 522 9.676861 TTATACTAGTAGTGTGTGTGTGTATCT 57.323 33.333 13.29 0.00 0.00 1.98
525 526 9.458727 AGTATTATACTAGTAGTGTGTGTGTGT 57.541 33.333 13.29 0.00 37.23 3.72
675 676 0.111704 CGACGTGCTTTGTGTCTTCG 60.112 55.000 0.00 0.00 0.00 3.79
687 688 1.061421 TGACACAGAAAAACGACGTGC 59.939 47.619 0.00 0.00 0.00 5.34
760 761 0.249155 GACCGGTCGACAACACAAGA 60.249 55.000 20.85 0.00 0.00 3.02
774 775 1.135972 CAATTCAAGAACTGCGACCGG 60.136 52.381 0.00 0.00 0.00 5.28
778 779 6.220930 AGTAGTAACAATTCAAGAACTGCGA 58.779 36.000 0.00 0.00 0.00 5.10
839 848 0.927083 GCGATCAATGCATGTGCGTC 60.927 55.000 0.00 2.77 45.83 5.19
849 858 6.363577 ACCAAGTTGTTATAGCGATCAATG 57.636 37.500 1.45 0.00 0.00 2.82
1074 1109 6.627087 ATGAACCTTCCTTTGTCATCTCTA 57.373 37.500 0.00 0.00 0.00 2.43
1164 1200 3.894427 TCTGTGCAAGGATTAAGCCAAAA 59.106 39.130 13.21 0.00 0.00 2.44
1217 1256 8.510243 TGTGTCAATCACTTTCATAATAGCAT 57.490 30.769 0.00 0.00 46.27 3.79
1315 1362 8.691661 ACAATGTTCAAACCTACTAACAGAAT 57.308 30.769 0.00 0.00 35.48 2.40
1344 1391 6.493115 TCATGAGAAACCTTATTTGCTTCCAA 59.507 34.615 0.00 0.00 0.00 3.53
1345 1392 6.009589 TCATGAGAAACCTTATTTGCTTCCA 58.990 36.000 0.00 0.00 0.00 3.53
1362 1409 4.026744 ACTAGGCTAGCAAGTTCATGAGA 58.973 43.478 21.26 0.00 0.00 3.27
1379 1426 7.044798 CCCTAGTCTCAGAAAATTTCACTAGG 58.955 42.308 26.71 26.71 44.40 3.02
1499 1550 7.600065 AGATGGTCAAATCTCATGACTTTTTG 58.400 34.615 11.42 11.42 45.13 2.44
1665 1744 4.127171 ACAAATTATAGTGTAGGCAGCCG 58.873 43.478 5.55 0.00 0.00 5.52
1725 1804 3.325870 TCTATTGTTGTGGTTCTGCGAG 58.674 45.455 0.00 0.00 0.00 5.03
1727 1806 4.406069 CAATCTATTGTTGTGGTTCTGCG 58.594 43.478 0.00 0.00 33.22 5.18
1760 1840 4.036262 TGAAGCTTACATGTTCACACCAAC 59.964 41.667 2.30 0.00 0.00 3.77
1861 1943 3.667360 ACGGTCTAAAATTGTTAGCGGT 58.333 40.909 0.00 0.00 0.00 5.68
1905 1987 2.590483 TCCCCTAAATCCCCAATTGGA 58.410 47.619 26.60 7.24 39.18 3.53
1938 2020 5.105853 TCCCCTATTTCCACTAGGTCTTTT 58.894 41.667 0.00 0.00 35.00 2.27
1993 2081 1.614241 AACCCTACGAGATTGCGCCT 61.614 55.000 4.18 0.00 33.86 5.52
2004 2092 5.813672 TCATCGGAAATTCTTAAACCCTACG 59.186 40.000 0.00 0.00 0.00 3.51
2023 2111 2.112522 CAACTCCTTCGTCGATCATCG 58.887 52.381 0.00 0.00 42.10 3.84
2024 2112 1.855360 GCAACTCCTTCGTCGATCATC 59.145 52.381 0.00 0.00 0.00 2.92
2028 2116 4.913126 GGCAACTCCTTCGTCGAT 57.087 55.556 0.00 0.00 0.00 3.59
2075 2164 2.123248 TTTCAGATGCTCCACCGGCA 62.123 55.000 0.00 0.00 44.05 5.69
2085 2174 3.056313 GCACCCCGCTTTCAGATGC 62.056 63.158 0.00 0.00 37.77 3.91
2096 2185 1.086696 CACTACTCAAATGCACCCCG 58.913 55.000 0.00 0.00 0.00 5.73
2107 2196 1.379977 CCTCCCGCCTCACTACTCA 60.380 63.158 0.00 0.00 0.00 3.41
2110 2199 2.043248 TCCCTCCCGCCTCACTAC 60.043 66.667 0.00 0.00 0.00 2.73
2150 2239 2.963854 CACATAGCTCAGCCGCCG 60.964 66.667 0.00 0.00 0.00 6.46
2151 2240 2.590007 CCACATAGCTCAGCCGCC 60.590 66.667 0.00 0.00 0.00 6.13
2152 2241 2.590007 CCCACATAGCTCAGCCGC 60.590 66.667 0.00 0.00 0.00 6.53
2153 2242 2.109799 CCCCACATAGCTCAGCCG 59.890 66.667 0.00 0.00 0.00 5.52
2154 2243 0.749454 CAACCCCACATAGCTCAGCC 60.749 60.000 0.00 0.00 0.00 4.85
2155 2244 0.749454 CCAACCCCACATAGCTCAGC 60.749 60.000 0.00 0.00 0.00 4.26
2156 2245 0.620556 ACCAACCCCACATAGCTCAG 59.379 55.000 0.00 0.00 0.00 3.35
2157 2246 0.618458 GACCAACCCCACATAGCTCA 59.382 55.000 0.00 0.00 0.00 4.26
2158 2247 0.462047 CGACCAACCCCACATAGCTC 60.462 60.000 0.00 0.00 0.00 4.09
2159 2248 1.602237 CGACCAACCCCACATAGCT 59.398 57.895 0.00 0.00 0.00 3.32
2178 2267 1.282875 GCCAAATAGGAATCGCCGC 59.717 57.895 0.00 0.00 43.43 6.53
2182 2271 1.939934 TGAAGCGCCAAATAGGAATCG 59.060 47.619 2.29 0.00 41.22 3.34
2203 2292 3.369546 AAATGCATATAAACAGGCGCC 57.630 42.857 21.89 21.89 0.00 6.53
2205 2294 4.697300 GCAAAATGCATATAAACAGGCG 57.303 40.909 0.00 0.00 44.26 5.52
2226 2315 1.088306 TATAAACAGGCGCCCGTTTG 58.912 50.000 38.67 26.93 34.30 2.93
2227 2316 1.673920 CATATAAACAGGCGCCCGTTT 59.326 47.619 35.68 35.68 35.63 3.60
2228 2317 1.305201 CATATAAACAGGCGCCCGTT 58.695 50.000 26.15 24.08 0.00 4.44
2247 2336 2.852507 CGCCCGTTTGCAAAATGC 59.147 55.556 14.67 15.02 45.29 3.56
2248 2337 2.666356 GGCGCCCGTTTGCAAAATG 61.666 57.895 18.11 9.52 0.00 2.32
2249 2338 2.356913 GGCGCCCGTTTGCAAAAT 60.357 55.556 18.11 0.00 0.00 1.82
2250 2339 3.532155 AGGCGCCCGTTTGCAAAA 61.532 55.556 26.15 0.00 0.00 2.44
2251 2340 4.277593 CAGGCGCCCGTTTGCAAA 62.278 61.111 26.15 8.05 0.00 3.68
2254 2343 4.404654 CTTCAGGCGCCCGTTTGC 62.405 66.667 26.15 0.00 0.00 3.68
2255 2344 3.737172 CCTTCAGGCGCCCGTTTG 61.737 66.667 26.15 15.69 0.00 2.93
2256 2345 4.265056 ACCTTCAGGCGCCCGTTT 62.265 61.111 26.15 0.00 39.32 3.60
2257 2346 4.699522 GACCTTCAGGCGCCCGTT 62.700 66.667 26.15 0.18 39.32 4.44
2260 2349 4.475135 GAGGACCTTCAGGCGCCC 62.475 72.222 26.15 5.24 39.32 6.13
2261 2350 4.475135 GGAGGACCTTCAGGCGCC 62.475 72.222 21.89 21.89 39.32 6.53
2262 2351 4.821589 CGGAGGACCTTCAGGCGC 62.822 72.222 0.00 0.00 39.32 6.53
2263 2352 3.382832 ACGGAGGACCTTCAGGCG 61.383 66.667 0.00 0.00 39.32 5.52
2264 2353 2.266055 CACGGAGGACCTTCAGGC 59.734 66.667 0.00 0.00 39.32 4.85
2265 2354 2.266055 GCACGGAGGACCTTCAGG 59.734 66.667 0.00 0.00 42.17 3.86
2266 2355 1.079543 CAGCACGGAGGACCTTCAG 60.080 63.158 0.00 0.00 0.00 3.02
2267 2356 2.583441 CCAGCACGGAGGACCTTCA 61.583 63.158 0.00 0.00 36.56 3.02
2268 2357 2.266055 CCAGCACGGAGGACCTTC 59.734 66.667 0.00 0.00 36.56 3.46
2269 2358 3.322466 CCCAGCACGGAGGACCTT 61.322 66.667 0.00 0.00 36.56 3.50
2285 2374 2.287264 TAAGGGTAATTGGGCCGGCC 62.287 60.000 38.57 38.57 0.00 6.13
2286 2375 0.178973 ATAAGGGTAATTGGGCCGGC 60.179 55.000 21.18 21.18 0.00 6.13
2287 2376 1.423921 AGATAAGGGTAATTGGGCCGG 59.576 52.381 0.00 0.00 0.00 6.13
2288 2377 2.951229 AGATAAGGGTAATTGGGCCG 57.049 50.000 0.00 0.00 0.00 6.13
2289 2378 7.612065 AAAAATAGATAAGGGTAATTGGGCC 57.388 36.000 0.00 0.00 0.00 5.80
2322 2411 7.195646 TCAATTCTCTACAAGTGCACTTTTTG 58.804 34.615 29.23 22.67 33.11 2.44
2323 2412 7.333528 TCAATTCTCTACAAGTGCACTTTTT 57.666 32.000 29.23 20.47 33.11 1.94
2324 2413 6.942532 TCAATTCTCTACAAGTGCACTTTT 57.057 33.333 29.23 24.88 33.11 2.27
2325 2414 6.238759 GGTTCAATTCTCTACAAGTGCACTTT 60.239 38.462 29.23 21.02 33.11 2.66
2326 2415 5.239525 GGTTCAATTCTCTACAAGTGCACTT 59.760 40.000 26.36 26.36 36.45 3.16
2327 2416 4.757149 GGTTCAATTCTCTACAAGTGCACT 59.243 41.667 15.25 15.25 0.00 4.40
2328 2417 4.377431 CGGTTCAATTCTCTACAAGTGCAC 60.377 45.833 9.40 9.40 0.00 4.57
2329 2418 3.745975 CGGTTCAATTCTCTACAAGTGCA 59.254 43.478 0.00 0.00 0.00 4.57
2330 2419 3.125316 CCGGTTCAATTCTCTACAAGTGC 59.875 47.826 0.00 0.00 0.00 4.40
2331 2420 4.152402 CACCGGTTCAATTCTCTACAAGTG 59.848 45.833 2.97 0.00 0.00 3.16
2332 2421 4.039973 TCACCGGTTCAATTCTCTACAAGT 59.960 41.667 2.97 0.00 0.00 3.16
2333 2422 4.389077 GTCACCGGTTCAATTCTCTACAAG 59.611 45.833 2.97 0.00 0.00 3.16
2334 2423 4.312443 GTCACCGGTTCAATTCTCTACAA 58.688 43.478 2.97 0.00 0.00 2.41
2335 2424 3.306502 GGTCACCGGTTCAATTCTCTACA 60.307 47.826 2.97 0.00 0.00 2.74
2336 2425 3.056035 AGGTCACCGGTTCAATTCTCTAC 60.056 47.826 2.97 0.00 0.00 2.59
2337 2426 3.170717 AGGTCACCGGTTCAATTCTCTA 58.829 45.455 2.97 0.00 0.00 2.43
2338 2427 1.978580 AGGTCACCGGTTCAATTCTCT 59.021 47.619 2.97 0.00 0.00 3.10
2339 2428 2.028020 AGAGGTCACCGGTTCAATTCTC 60.028 50.000 2.97 6.69 0.00 2.87
2340 2429 1.978580 AGAGGTCACCGGTTCAATTCT 59.021 47.619 2.97 1.54 0.00 2.40
2341 2430 2.347731 GAGAGGTCACCGGTTCAATTC 58.652 52.381 2.97 0.00 0.00 2.17
2342 2431 1.337823 CGAGAGGTCACCGGTTCAATT 60.338 52.381 2.97 0.00 0.00 2.32
2343 2432 0.246635 CGAGAGGTCACCGGTTCAAT 59.753 55.000 2.97 0.00 0.00 2.57
2344 2433 1.663739 CGAGAGGTCACCGGTTCAA 59.336 57.895 2.97 0.00 0.00 2.69
2345 2434 2.927580 GCGAGAGGTCACCGGTTCA 61.928 63.158 2.97 0.00 0.00 3.18
2346 2435 2.126031 GCGAGAGGTCACCGGTTC 60.126 66.667 2.97 0.00 0.00 3.62
2347 2436 2.156051 GAAGCGAGAGGTCACCGGTT 62.156 60.000 2.97 0.00 44.93 4.44
2348 2437 2.600769 AAGCGAGAGGTCACCGGT 60.601 61.111 0.00 0.00 43.76 5.28
2349 2438 2.182030 GAAGCGAGAGGTCACCGG 59.818 66.667 0.00 0.00 43.76 5.28
2350 2439 2.202492 CGAAGCGAGAGGTCACCG 60.202 66.667 0.00 0.00 43.76 4.94
2351 2440 1.153997 GTCGAAGCGAGAGGTCACC 60.154 63.158 0.00 0.00 43.76 4.02
2352 2441 0.455295 CTGTCGAAGCGAGAGGTCAC 60.455 60.000 6.14 0.00 42.30 3.67
2353 2442 0.605589 TCTGTCGAAGCGAGAGGTCA 60.606 55.000 12.94 0.00 45.29 4.02
2354 2443 0.736053 ATCTGTCGAAGCGAGAGGTC 59.264 55.000 12.94 0.00 45.29 3.85
2355 2444 0.453793 CATCTGTCGAAGCGAGAGGT 59.546 55.000 12.94 4.19 45.29 3.85
2356 2445 0.453793 ACATCTGTCGAAGCGAGAGG 59.546 55.000 12.94 2.43 45.29 3.69
2357 2446 1.916651 CAACATCTGTCGAAGCGAGAG 59.083 52.381 7.56 7.56 46.33 3.20
2358 2447 1.982612 CAACATCTGTCGAAGCGAGA 58.017 50.000 0.00 0.00 36.23 4.04
2359 2448 0.368227 GCAACATCTGTCGAAGCGAG 59.632 55.000 0.00 0.00 36.23 5.03
2360 2449 0.319469 TGCAACATCTGTCGAAGCGA 60.319 50.000 0.00 0.00 0.00 4.93
2361 2450 0.179240 GTGCAACATCTGTCGAAGCG 60.179 55.000 0.00 0.00 36.32 4.68
2362 2451 1.151668 AGTGCAACATCTGTCGAAGC 58.848 50.000 0.00 0.00 41.43 3.86
2363 2452 3.123621 GGTTAGTGCAACATCTGTCGAAG 59.876 47.826 0.00 0.00 41.43 3.79
2364 2453 3.064207 GGTTAGTGCAACATCTGTCGAA 58.936 45.455 0.00 0.00 41.43 3.71
2365 2454 2.036604 TGGTTAGTGCAACATCTGTCGA 59.963 45.455 0.00 0.00 41.43 4.20
2366 2455 2.157668 GTGGTTAGTGCAACATCTGTCG 59.842 50.000 0.00 0.00 41.43 4.35
2367 2456 3.138304 TGTGGTTAGTGCAACATCTGTC 58.862 45.455 0.00 0.00 41.43 3.51
2368 2457 3.207265 TGTGGTTAGTGCAACATCTGT 57.793 42.857 0.00 0.00 41.43 3.41
2369 2458 3.058016 CCTTGTGGTTAGTGCAACATCTG 60.058 47.826 0.00 0.00 41.43 2.90
2370 2459 3.149196 CCTTGTGGTTAGTGCAACATCT 58.851 45.455 0.00 0.00 41.43 2.90
2371 2460 2.351738 GCCTTGTGGTTAGTGCAACATC 60.352 50.000 0.00 0.00 39.04 3.06
2372 2461 1.613437 GCCTTGTGGTTAGTGCAACAT 59.387 47.619 0.00 0.00 39.04 2.71
2373 2462 1.028905 GCCTTGTGGTTAGTGCAACA 58.971 50.000 0.00 0.00 39.04 3.33
2374 2463 0.313987 GGCCTTGTGGTTAGTGCAAC 59.686 55.000 0.00 0.00 36.32 4.17
2375 2464 0.106469 TGGCCTTGTGGTTAGTGCAA 60.106 50.000 3.32 0.00 35.27 4.08
2376 2465 0.821711 GTGGCCTTGTGGTTAGTGCA 60.822 55.000 3.32 0.00 35.27 4.57
2377 2466 0.537371 AGTGGCCTTGTGGTTAGTGC 60.537 55.000 3.32 0.00 35.27 4.40
2378 2467 1.880027 GAAGTGGCCTTGTGGTTAGTG 59.120 52.381 3.32 0.00 35.27 2.74
2379 2468 1.493022 TGAAGTGGCCTTGTGGTTAGT 59.507 47.619 3.32 0.00 35.27 2.24
2380 2469 1.880027 GTGAAGTGGCCTTGTGGTTAG 59.120 52.381 3.32 0.00 35.27 2.34
2381 2470 1.477923 GGTGAAGTGGCCTTGTGGTTA 60.478 52.381 3.32 0.00 35.27 2.85
2382 2471 0.755327 GGTGAAGTGGCCTTGTGGTT 60.755 55.000 3.32 0.00 35.27 3.67
2383 2472 1.152756 GGTGAAGTGGCCTTGTGGT 60.153 57.895 3.32 0.00 35.27 4.16
2384 2473 1.151450 AGGTGAAGTGGCCTTGTGG 59.849 57.895 3.32 0.00 0.00 4.17
2385 2474 0.179020 TCAGGTGAAGTGGCCTTGTG 60.179 55.000 3.32 0.00 31.73 3.33
2386 2475 0.179018 GTCAGGTGAAGTGGCCTTGT 60.179 55.000 3.32 0.00 31.73 3.16
2387 2476 0.890996 GGTCAGGTGAAGTGGCCTTG 60.891 60.000 3.32 0.00 36.69 3.61
2388 2477 1.456287 GGTCAGGTGAAGTGGCCTT 59.544 57.895 3.32 0.00 36.69 4.35
2389 2478 1.462238 AGGTCAGGTGAAGTGGCCT 60.462 57.895 3.32 0.00 45.59 5.19
2390 2479 1.302832 CAGGTCAGGTGAAGTGGCC 60.303 63.158 0.00 0.00 40.26 5.36
2391 2480 1.302832 CCAGGTCAGGTGAAGTGGC 60.303 63.158 0.00 0.00 0.00 5.01
2392 2481 1.348064 TACCAGGTCAGGTGAAGTGG 58.652 55.000 0.00 7.15 43.14 4.00
2393 2482 3.485463 TTTACCAGGTCAGGTGAAGTG 57.515 47.619 0.00 0.00 43.14 3.16
2394 2483 4.398319 CAATTTACCAGGTCAGGTGAAGT 58.602 43.478 0.00 0.00 43.14 3.01
2395 2484 3.191371 GCAATTTACCAGGTCAGGTGAAG 59.809 47.826 0.00 0.00 43.14 3.02
2396 2485 3.153919 GCAATTTACCAGGTCAGGTGAA 58.846 45.455 0.00 0.00 43.14 3.18
2397 2486 2.107378 TGCAATTTACCAGGTCAGGTGA 59.893 45.455 0.00 0.00 43.14 4.02
2398 2487 2.513753 TGCAATTTACCAGGTCAGGTG 58.486 47.619 0.00 0.00 43.14 4.00
2399 2488 2.890945 GTTGCAATTTACCAGGTCAGGT 59.109 45.455 0.59 0.00 45.72 4.00
2400 2489 3.157087 AGTTGCAATTTACCAGGTCAGG 58.843 45.455 0.59 0.00 0.00 3.86
2401 2490 4.074970 AGAGTTGCAATTTACCAGGTCAG 58.925 43.478 0.59 0.00 0.00 3.51
2402 2491 4.098914 AGAGTTGCAATTTACCAGGTCA 57.901 40.909 0.59 0.00 0.00 4.02
2403 2492 5.453567 AAAGAGTTGCAATTTACCAGGTC 57.546 39.130 0.59 0.00 0.00 3.85
2404 2493 5.128663 ACAAAAGAGTTGCAATTTACCAGGT 59.871 36.000 0.59 0.00 0.00 4.00
2405 2494 5.600696 ACAAAAGAGTTGCAATTTACCAGG 58.399 37.500 0.59 0.00 0.00 4.45
2406 2495 8.816640 AATACAAAAGAGTTGCAATTTACCAG 57.183 30.769 0.59 0.00 0.00 4.00
2407 2496 9.606631 AAAATACAAAAGAGTTGCAATTTACCA 57.393 25.926 0.59 0.00 0.00 3.25
2412 2501 9.822185 AGAAGAAAATACAAAAGAGTTGCAATT 57.178 25.926 0.59 0.00 0.00 2.32
2413 2502 9.822185 AAGAAGAAAATACAAAAGAGTTGCAAT 57.178 25.926 0.59 0.00 0.00 3.56
2414 2503 9.651913 AAAGAAGAAAATACAAAAGAGTTGCAA 57.348 25.926 0.00 0.00 0.00 4.08
2415 2504 9.086336 CAAAGAAGAAAATACAAAAGAGTTGCA 57.914 29.630 0.00 0.00 0.00 4.08
2416 2505 9.087424 ACAAAGAAGAAAATACAAAAGAGTTGC 57.913 29.630 0.00 0.00 0.00 4.17
2430 2519 9.214957 GGAAAAAGGAGAAAACAAAGAAGAAAA 57.785 29.630 0.00 0.00 0.00 2.29
2431 2520 8.593679 AGGAAAAAGGAGAAAACAAAGAAGAAA 58.406 29.630 0.00 0.00 0.00 2.52
2432 2521 8.134202 AGGAAAAAGGAGAAAACAAAGAAGAA 57.866 30.769 0.00 0.00 0.00 2.52
2433 2522 7.718334 AGGAAAAAGGAGAAAACAAAGAAGA 57.282 32.000 0.00 0.00 0.00 2.87
2434 2523 8.777865 AAAGGAAAAAGGAGAAAACAAAGAAG 57.222 30.769 0.00 0.00 0.00 2.85
2435 2524 9.567776 AAAAAGGAAAAAGGAGAAAACAAAGAA 57.432 25.926 0.00 0.00 0.00 2.52
2438 2527 9.221933 GGTAAAAAGGAAAAAGGAGAAAACAAA 57.778 29.630 0.00 0.00 0.00 2.83
2439 2528 8.598916 AGGTAAAAAGGAAAAAGGAGAAAACAA 58.401 29.630 0.00 0.00 0.00 2.83
2440 2529 8.141298 AGGTAAAAAGGAAAAAGGAGAAAACA 57.859 30.769 0.00 0.00 0.00 2.83
2441 2530 9.444600 AAAGGTAAAAAGGAAAAAGGAGAAAAC 57.555 29.630 0.00 0.00 0.00 2.43
2444 2533 9.661563 GAAAAAGGTAAAAAGGAAAAAGGAGAA 57.338 29.630 0.00 0.00 0.00 2.87
2445 2534 8.817876 TGAAAAAGGTAAAAAGGAAAAAGGAGA 58.182 29.630 0.00 0.00 0.00 3.71
2446 2535 9.613428 ATGAAAAAGGTAAAAAGGAAAAAGGAG 57.387 29.630 0.00 0.00 0.00 3.69
2447 2536 9.967451 AATGAAAAAGGTAAAAAGGAAAAAGGA 57.033 25.926 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.