Multiple sequence alignment - TraesCS7B01G165300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G165300 chr7B 100.000 2523 0 0 1 2523 228361716 228364238 0.000000e+00 4660.0
1 TraesCS7B01G165300 chr7B 83.967 368 38 11 1 356 714600678 714600320 1.450000e-87 333.0
2 TraesCS7B01G165300 chr7B 94.924 197 9 1 1 196 567202855 567203051 8.770000e-80 307.0
3 TraesCS7B01G165300 chr7B 91.925 161 9 3 200 360 378300264 378300420 3.270000e-54 222.0
4 TraesCS7B01G165300 chr7D 95.638 2109 55 6 442 2523 251373428 251375526 0.000000e+00 3350.0
5 TraesCS7B01G165300 chr7D 89.941 169 13 2 192 360 480437772 480437608 5.470000e-52 215.0
6 TraesCS7B01G165300 chr7A 94.034 2112 73 19 444 2523 270044251 270042161 0.000000e+00 3153.0
7 TraesCS7B01G165300 chr2A 84.511 368 37 10 1 356 639072183 639072542 1.860000e-91 346.0
8 TraesCS7B01G165300 chr2A 87.368 190 17 6 172 360 456179029 456178846 7.070000e-51 211.0
9 TraesCS7B01G165300 chr5B 95.545 202 8 1 1 201 254348993 254348792 3.130000e-84 322.0
10 TraesCS7B01G165300 chr5B 94.581 203 10 1 1 202 288023992 288023790 1.880000e-81 313.0
11 TraesCS7B01G165300 chr5B 80.370 270 53 0 1488 1757 480293998 480294267 3.290000e-49 206.0
12 TraesCS7B01G165300 chr5B 80.315 254 33 14 1892 2137 480294278 480294522 2.580000e-40 176.0
13 TraesCS7B01G165300 chr5B 88.028 142 14 2 1875 2016 647943836 647943974 5.580000e-37 165.0
14 TraesCS7B01G165300 chr2B 93.301 209 12 2 1 208 504444176 504444383 8.770000e-80 307.0
15 TraesCS7B01G165300 chr1B 94.089 203 11 1 1 202 515979029 515979231 8.770000e-80 307.0
16 TraesCS7B01G165300 chr1B 81.364 220 30 8 1878 2096 522060757 522060966 4.320000e-38 169.0
17 TraesCS7B01G165300 chr1B 88.983 118 13 0 1884 2001 671202340 671202457 2.020000e-31 147.0
18 TraesCS7B01G165300 chr5D 94.059 202 10 2 1 201 175607138 175607338 3.150000e-79 305.0
19 TraesCS7B01G165300 chr5D 91.925 161 9 2 200 360 365507582 365507426 3.270000e-54 222.0
20 TraesCS7B01G165300 chr5D 80.370 270 53 0 1488 1757 400280744 400281013 3.290000e-49 206.0
21 TraesCS7B01G165300 chr5D 80.556 252 36 9 1892 2137 400281024 400281268 5.540000e-42 182.0
22 TraesCS7B01G165300 chr5D 87.324 142 15 2 1875 2016 515118146 515118284 2.600000e-35 159.0
23 TraesCS7B01G165300 chr5D 98.039 51 1 0 2473 2523 378050741 378050791 3.460000e-14 89.8
24 TraesCS7B01G165300 chr3A 92.166 217 14 2 1 216 9488936 9488722 1.130000e-78 303.0
25 TraesCS7B01G165300 chr3A 83.575 207 25 6 1890 2096 599861530 599861333 4.290000e-43 185.0
26 TraesCS7B01G165300 chr3B 88.265 196 13 6 200 389 263273339 263273148 2.530000e-55 226.0
27 TraesCS7B01G165300 chr3B 84.058 207 24 6 1890 2096 603602128 603601931 9.210000e-45 191.0
28 TraesCS7B01G165300 chrUn 91.925 161 9 3 200 360 129541902 129542058 3.270000e-54 222.0
29 TraesCS7B01G165300 chrUn 91.304 161 10 2 200 360 183138193 183138037 1.520000e-52 217.0
30 TraesCS7B01G165300 chr3D 91.925 161 9 2 200 360 222646119 222645963 3.270000e-54 222.0
31 TraesCS7B01G165300 chr3D 84.541 207 23 6 1890 2096 457019243 457019046 1.980000e-46 196.0
32 TraesCS7B01G165300 chr3D 79.528 254 35 14 1892 2137 554063903 554063659 5.580000e-37 165.0
33 TraesCS7B01G165300 chr3D 100.000 51 0 0 2473 2523 608535713 608535763 7.430000e-16 95.3
34 TraesCS7B01G165300 chr6D 91.304 161 10 3 200 360 168723969 168723813 1.520000e-52 217.0
35 TraesCS7B01G165300 chr6D 84.677 124 15 4 1877 1998 472358548 472358669 1.230000e-23 121.0
36 TraesCS7B01G165300 chr5A 81.111 270 51 0 1488 1757 505612465 505612734 1.520000e-52 217.0
37 TraesCS7B01G165300 chr5A 81.203 266 37 11 1878 2137 505612731 505612989 4.260000e-48 202.0
38 TraesCS7B01G165300 chr5A 87.324 142 15 2 1875 2016 643332500 643332638 2.600000e-35 159.0
39 TraesCS7B01G165300 chr4B 72.435 653 140 32 1006 1630 22273505 22274145 3.340000e-39 172.0
40 TraesCS7B01G165300 chr1D 80.165 242 36 10 1878 2118 388650705 388650935 1.200000e-38 171.0
41 TraesCS7B01G165300 chr1D 92.233 103 8 0 1899 2001 482839531 482839633 2.020000e-31 147.0
42 TraesCS7B01G165300 chr1A 80.165 242 36 10 1878 2118 487741080 487741310 1.200000e-38 171.0
43 TraesCS7B01G165300 chr1A 94.118 102 6 0 1900 2001 579296558 579296457 3.360000e-34 156.0
44 TraesCS7B01G165300 chr4D 76.974 304 62 6 1331 1630 12411054 12410755 1.550000e-37 167.0
45 TraesCS7B01G165300 chr4A 75.987 304 65 7 1331 1630 590278261 590278560 1.560000e-32 150.0
46 TraesCS7B01G165300 chr2D 100.000 49 0 0 2473 2521 570985715 570985667 9.610000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G165300 chr7B 228361716 228364238 2522 False 4660.0 4660 100.000 1 2523 1 chr7B.!!$F1 2522
1 TraesCS7B01G165300 chr7D 251373428 251375526 2098 False 3350.0 3350 95.638 442 2523 1 chr7D.!!$F1 2081
2 TraesCS7B01G165300 chr7A 270042161 270044251 2090 True 3153.0 3153 94.034 444 2523 1 chr7A.!!$R1 2079
3 TraesCS7B01G165300 chr5A 505612465 505612989 524 False 209.5 217 81.157 1488 2137 2 chr5A.!!$F2 649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.040157 CCACTGCATGTCGTGTTTGG 60.040 55.0 13.12 0.00 0.00 3.28 F
151 152 0.242555 ACCGCGCCTAAATGTTTTGG 59.757 50.0 0.00 2.22 36.36 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1387 1401 0.392461 GCAACGCCAAGGACCTCATA 60.392 55.0 0.00 0.0 0.00 2.15 R
1868 1882 0.535335 ACGTCATCCAGGTACGCAAT 59.465 50.0 10.44 0.0 40.18 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.855689 ATGCAATGAACTAACCACTGC 57.144 42.857 0.00 0.00 0.00 4.40
33 34 2.580962 TGCAATGAACTAACCACTGCA 58.419 42.857 0.00 0.00 36.06 4.41
34 35 3.156293 TGCAATGAACTAACCACTGCAT 58.844 40.909 0.00 0.00 33.65 3.96
35 36 3.057386 TGCAATGAACTAACCACTGCATG 60.057 43.478 0.00 0.00 33.65 4.06
36 37 3.057315 GCAATGAACTAACCACTGCATGT 60.057 43.478 0.00 0.00 0.00 3.21
37 38 4.726416 CAATGAACTAACCACTGCATGTC 58.274 43.478 0.00 0.00 0.00 3.06
38 39 2.412870 TGAACTAACCACTGCATGTCG 58.587 47.619 0.00 0.00 0.00 4.35
39 40 2.224185 TGAACTAACCACTGCATGTCGT 60.224 45.455 0.00 0.00 0.00 4.34
40 41 1.795768 ACTAACCACTGCATGTCGTG 58.204 50.000 8.87 8.87 0.00 4.35
41 42 1.070134 ACTAACCACTGCATGTCGTGT 59.930 47.619 13.12 2.00 0.00 4.49
42 43 2.143122 CTAACCACTGCATGTCGTGTT 58.857 47.619 13.12 10.39 0.00 3.32
43 44 1.388547 AACCACTGCATGTCGTGTTT 58.611 45.000 13.12 5.09 0.00 2.83
44 45 0.662619 ACCACTGCATGTCGTGTTTG 59.337 50.000 13.12 3.87 0.00 2.93
45 46 0.040157 CCACTGCATGTCGTGTTTGG 60.040 55.000 13.12 0.00 0.00 3.28
46 47 0.662619 CACTGCATGTCGTGTTTGGT 59.337 50.000 7.95 0.00 0.00 3.67
47 48 1.870402 CACTGCATGTCGTGTTTGGTA 59.130 47.619 7.95 0.00 0.00 3.25
48 49 2.096268 CACTGCATGTCGTGTTTGGTAG 60.096 50.000 7.95 0.00 0.00 3.18
49 50 2.143122 CTGCATGTCGTGTTTGGTAGT 58.857 47.619 0.00 0.00 0.00 2.73
50 51 2.548057 CTGCATGTCGTGTTTGGTAGTT 59.452 45.455 0.00 0.00 0.00 2.24
51 52 2.946329 TGCATGTCGTGTTTGGTAGTTT 59.054 40.909 0.00 0.00 0.00 2.66
52 53 3.002862 TGCATGTCGTGTTTGGTAGTTTC 59.997 43.478 0.00 0.00 0.00 2.78
53 54 3.002862 GCATGTCGTGTTTGGTAGTTTCA 59.997 43.478 0.00 0.00 0.00 2.69
54 55 4.496673 GCATGTCGTGTTTGGTAGTTTCAA 60.497 41.667 0.00 0.00 0.00 2.69
55 56 4.868450 TGTCGTGTTTGGTAGTTTCAAG 57.132 40.909 0.00 0.00 0.00 3.02
56 57 4.255301 TGTCGTGTTTGGTAGTTTCAAGT 58.745 39.130 0.00 0.00 0.00 3.16
57 58 4.330620 TGTCGTGTTTGGTAGTTTCAAGTC 59.669 41.667 0.00 0.00 0.00 3.01
58 59 4.330620 GTCGTGTTTGGTAGTTTCAAGTCA 59.669 41.667 0.00 0.00 0.00 3.41
59 60 5.007332 GTCGTGTTTGGTAGTTTCAAGTCAT 59.993 40.000 0.00 0.00 0.00 3.06
60 61 5.587043 TCGTGTTTGGTAGTTTCAAGTCATT 59.413 36.000 0.00 0.00 0.00 2.57
61 62 6.762187 TCGTGTTTGGTAGTTTCAAGTCATTA 59.238 34.615 0.00 0.00 0.00 1.90
62 63 7.280428 TCGTGTTTGGTAGTTTCAAGTCATTAA 59.720 33.333 0.00 0.00 0.00 1.40
63 64 7.911205 CGTGTTTGGTAGTTTCAAGTCATTAAA 59.089 33.333 0.00 0.00 0.00 1.52
64 65 9.575783 GTGTTTGGTAGTTTCAAGTCATTAAAA 57.424 29.630 0.00 0.00 0.00 1.52
65 66 9.796120 TGTTTGGTAGTTTCAAGTCATTAAAAG 57.204 29.630 0.00 0.00 0.00 2.27
66 67 8.752254 GTTTGGTAGTTTCAAGTCATTAAAAGC 58.248 33.333 0.00 0.00 0.00 3.51
67 68 7.575414 TGGTAGTTTCAAGTCATTAAAAGCA 57.425 32.000 0.00 0.00 0.00 3.91
68 69 8.177119 TGGTAGTTTCAAGTCATTAAAAGCAT 57.823 30.769 0.00 0.00 0.00 3.79
69 70 8.081633 TGGTAGTTTCAAGTCATTAAAAGCATG 58.918 33.333 0.00 0.00 0.00 4.06
70 71 7.542130 GGTAGTTTCAAGTCATTAAAAGCATGG 59.458 37.037 0.00 0.00 0.00 3.66
71 72 7.288810 AGTTTCAAGTCATTAAAAGCATGGA 57.711 32.000 0.00 0.00 0.00 3.41
72 73 7.147976 AGTTTCAAGTCATTAAAAGCATGGAC 58.852 34.615 0.00 0.00 0.00 4.02
73 74 6.647334 TTCAAGTCATTAAAAGCATGGACA 57.353 33.333 0.00 0.00 0.00 4.02
74 75 6.012658 TCAAGTCATTAAAAGCATGGACAC 57.987 37.500 0.00 0.00 0.00 3.67
75 76 5.048083 TCAAGTCATTAAAAGCATGGACACC 60.048 40.000 0.00 0.00 0.00 4.16
76 77 4.666512 AGTCATTAAAAGCATGGACACCT 58.333 39.130 0.00 0.00 0.00 4.00
77 78 4.702131 AGTCATTAAAAGCATGGACACCTC 59.298 41.667 0.00 0.00 0.00 3.85
78 79 4.702131 GTCATTAAAAGCATGGACACCTCT 59.298 41.667 0.00 0.00 0.00 3.69
79 80 5.183904 GTCATTAAAAGCATGGACACCTCTT 59.816 40.000 0.00 0.00 0.00 2.85
80 81 6.374333 GTCATTAAAAGCATGGACACCTCTTA 59.626 38.462 0.00 0.00 0.00 2.10
81 82 7.067494 GTCATTAAAAGCATGGACACCTCTTAT 59.933 37.037 0.00 0.00 0.00 1.73
82 83 7.615365 TCATTAAAAGCATGGACACCTCTTATT 59.385 33.333 0.00 0.00 0.00 1.40
83 84 7.775053 TTAAAAGCATGGACACCTCTTATTT 57.225 32.000 0.00 0.00 0.00 1.40
84 85 5.904362 AAAGCATGGACACCTCTTATTTC 57.096 39.130 0.00 0.00 0.00 2.17
85 86 4.851639 AGCATGGACACCTCTTATTTCT 57.148 40.909 0.00 0.00 0.00 2.52
86 87 5.184892 AGCATGGACACCTCTTATTTCTT 57.815 39.130 0.00 0.00 0.00 2.52
87 88 6.313519 AGCATGGACACCTCTTATTTCTTA 57.686 37.500 0.00 0.00 0.00 2.10
88 89 6.904626 AGCATGGACACCTCTTATTTCTTAT 58.095 36.000 0.00 0.00 0.00 1.73
89 90 7.349598 AGCATGGACACCTCTTATTTCTTATT 58.650 34.615 0.00 0.00 0.00 1.40
90 91 7.284034 AGCATGGACACCTCTTATTTCTTATTG 59.716 37.037 0.00 0.00 0.00 1.90
91 92 7.469181 GCATGGACACCTCTTATTTCTTATTGG 60.469 40.741 0.00 0.00 0.00 3.16
92 93 7.027874 TGGACACCTCTTATTTCTTATTGGT 57.972 36.000 0.00 0.00 0.00 3.67
93 94 7.466804 TGGACACCTCTTATTTCTTATTGGTT 58.533 34.615 0.00 0.00 0.00 3.67
94 95 7.393234 TGGACACCTCTTATTTCTTATTGGTTG 59.607 37.037 0.00 0.00 0.00 3.77
95 96 7.610305 GGACACCTCTTATTTCTTATTGGTTGA 59.390 37.037 0.00 0.00 0.00 3.18
96 97 9.178758 GACACCTCTTATTTCTTATTGGTTGAT 57.821 33.333 0.00 0.00 0.00 2.57
109 110 9.513906 TCTTATTGGTTGATATGTCAAGAAACA 57.486 29.630 4.98 0.63 44.58 2.83
113 114 9.829507 ATTGGTTGATATGTCAAGAAACAAAAA 57.170 25.926 4.98 0.00 44.58 1.94
135 136 6.920569 AAAGAGGTATAAGTTAATGCACCG 57.079 37.500 0.00 0.00 0.00 4.94
136 137 4.377897 AGAGGTATAAGTTAATGCACCGC 58.622 43.478 0.00 0.00 0.00 5.68
137 138 3.128349 AGGTATAAGTTAATGCACCGCG 58.872 45.455 0.00 0.00 0.00 6.46
138 139 2.349155 GGTATAAGTTAATGCACCGCGC 60.349 50.000 0.00 0.00 42.89 6.86
139 140 0.661020 ATAAGTTAATGCACCGCGCC 59.339 50.000 0.00 0.00 41.33 6.53
140 141 0.391927 TAAGTTAATGCACCGCGCCT 60.392 50.000 0.00 0.00 41.33 5.52
141 142 0.391927 AAGTTAATGCACCGCGCCTA 60.392 50.000 0.00 0.00 41.33 3.93
142 143 0.391927 AGTTAATGCACCGCGCCTAA 60.392 50.000 0.00 0.00 41.33 2.69
143 144 0.448593 GTTAATGCACCGCGCCTAAA 59.551 50.000 0.00 0.00 41.33 1.85
144 145 1.064952 GTTAATGCACCGCGCCTAAAT 59.935 47.619 0.00 0.00 41.33 1.40
145 146 0.660488 TAATGCACCGCGCCTAAATG 59.340 50.000 0.00 0.00 41.33 2.32
146 147 1.312371 AATGCACCGCGCCTAAATGT 61.312 50.000 0.00 0.00 41.33 2.71
147 148 1.312371 ATGCACCGCGCCTAAATGTT 61.312 50.000 0.00 0.00 41.33 2.71
148 149 1.211709 GCACCGCGCCTAAATGTTT 59.788 52.632 0.00 0.00 32.94 2.83
149 150 0.388006 GCACCGCGCCTAAATGTTTT 60.388 50.000 0.00 0.00 32.94 2.43
150 151 1.335935 CACCGCGCCTAAATGTTTTG 58.664 50.000 0.00 0.00 0.00 2.44
151 152 0.242555 ACCGCGCCTAAATGTTTTGG 59.757 50.000 0.00 2.22 36.36 3.28
152 153 0.523966 CCGCGCCTAAATGTTTTGGA 59.476 50.000 0.00 0.00 35.47 3.53
153 154 1.068194 CCGCGCCTAAATGTTTTGGAA 60.068 47.619 0.00 0.00 35.47 3.53
154 155 2.416701 CCGCGCCTAAATGTTTTGGAAT 60.417 45.455 0.00 0.00 35.47 3.01
155 156 3.249917 CGCGCCTAAATGTTTTGGAATT 58.750 40.909 0.00 0.00 35.47 2.17
156 157 4.416620 CGCGCCTAAATGTTTTGGAATTA 58.583 39.130 0.00 0.00 35.47 1.40
157 158 5.040635 CGCGCCTAAATGTTTTGGAATTAT 58.959 37.500 0.00 0.00 35.47 1.28
158 159 5.518487 CGCGCCTAAATGTTTTGGAATTATT 59.482 36.000 0.00 0.00 35.47 1.40
159 160 6.035542 CGCGCCTAAATGTTTTGGAATTATTT 59.964 34.615 0.00 0.00 35.47 1.40
160 161 7.179410 GCGCCTAAATGTTTTGGAATTATTTG 58.821 34.615 9.62 0.00 35.47 2.32
161 162 7.676104 GCGCCTAAATGTTTTGGAATTATTTGG 60.676 37.037 9.62 0.00 35.47 3.28
162 163 7.333174 CGCCTAAATGTTTTGGAATTATTTGGT 59.667 33.333 9.62 0.00 35.47 3.67
163 164 9.008965 GCCTAAATGTTTTGGAATTATTTGGTT 57.991 29.630 9.62 0.00 35.47 3.67
167 168 9.943163 AAATGTTTTGGAATTATTTGGTTTTCG 57.057 25.926 0.00 0.00 0.00 3.46
168 169 8.669946 ATGTTTTGGAATTATTTGGTTTTCGT 57.330 26.923 0.00 0.00 0.00 3.85
169 170 9.765795 ATGTTTTGGAATTATTTGGTTTTCGTA 57.234 25.926 0.00 0.00 0.00 3.43
170 171 9.595823 TGTTTTGGAATTATTTGGTTTTCGTAA 57.404 25.926 0.00 0.00 0.00 3.18
191 192 4.966965 AGATGACTTACACACCTAGACG 57.033 45.455 0.00 0.00 0.00 4.18
192 193 3.695060 AGATGACTTACACACCTAGACGG 59.305 47.826 0.00 0.00 39.35 4.79
193 194 3.144657 TGACTTACACACCTAGACGGA 57.855 47.619 0.00 0.00 36.31 4.69
194 195 3.079578 TGACTTACACACCTAGACGGAG 58.920 50.000 0.00 0.00 36.31 4.63
195 196 2.422832 GACTTACACACCTAGACGGAGG 59.577 54.545 0.00 0.00 42.89 4.30
196 197 2.040813 ACTTACACACCTAGACGGAGGA 59.959 50.000 7.23 0.00 39.15 3.71
197 198 2.885135 TACACACCTAGACGGAGGAA 57.115 50.000 7.23 0.00 39.15 3.36
198 199 1.546961 ACACACCTAGACGGAGGAAG 58.453 55.000 7.23 2.66 39.15 3.46
199 200 1.203025 ACACACCTAGACGGAGGAAGT 60.203 52.381 7.23 3.19 39.15 3.01
200 201 2.040813 ACACACCTAGACGGAGGAAGTA 59.959 50.000 7.23 0.00 39.15 2.24
201 202 2.683867 CACACCTAGACGGAGGAAGTAG 59.316 54.545 7.23 0.00 39.15 2.57
202 203 2.299521 CACCTAGACGGAGGAAGTAGG 58.700 57.143 7.23 0.00 39.15 3.18
203 204 1.921748 ACCTAGACGGAGGAAGTAGGT 59.078 52.381 7.23 0.00 39.15 3.08
204 205 2.299521 CCTAGACGGAGGAAGTAGGTG 58.700 57.143 0.00 0.00 39.15 4.00
205 206 2.299521 CTAGACGGAGGAAGTAGGTGG 58.700 57.143 0.00 0.00 0.00 4.61
206 207 0.408700 AGACGGAGGAAGTAGGTGGT 59.591 55.000 0.00 0.00 0.00 4.16
207 208 1.637553 AGACGGAGGAAGTAGGTGGTA 59.362 52.381 0.00 0.00 0.00 3.25
208 209 2.042162 AGACGGAGGAAGTAGGTGGTAA 59.958 50.000 0.00 0.00 0.00 2.85
209 210 2.165234 GACGGAGGAAGTAGGTGGTAAC 59.835 54.545 0.00 0.00 0.00 2.50
225 226 5.598416 TGGTAACATCACACATCTCTAGG 57.402 43.478 0.00 0.00 46.17 3.02
226 227 4.141937 TGGTAACATCACACATCTCTAGGC 60.142 45.833 0.00 0.00 46.17 3.93
227 228 4.141937 GGTAACATCACACATCTCTAGGCA 60.142 45.833 0.00 0.00 0.00 4.75
228 229 4.558226 AACATCACACATCTCTAGGCAA 57.442 40.909 0.00 0.00 0.00 4.52
229 230 4.558226 ACATCACACATCTCTAGGCAAA 57.442 40.909 0.00 0.00 0.00 3.68
230 231 4.910195 ACATCACACATCTCTAGGCAAAA 58.090 39.130 0.00 0.00 0.00 2.44
231 232 4.697352 ACATCACACATCTCTAGGCAAAAC 59.303 41.667 0.00 0.00 0.00 2.43
232 233 4.350368 TCACACATCTCTAGGCAAAACA 57.650 40.909 0.00 0.00 0.00 2.83
233 234 4.318332 TCACACATCTCTAGGCAAAACAG 58.682 43.478 0.00 0.00 0.00 3.16
234 235 4.040339 TCACACATCTCTAGGCAAAACAGA 59.960 41.667 0.00 0.00 0.00 3.41
235 236 4.940046 CACACATCTCTAGGCAAAACAGAT 59.060 41.667 0.00 0.00 0.00 2.90
236 237 4.940046 ACACATCTCTAGGCAAAACAGATG 59.060 41.667 11.74 11.74 44.10 2.90
237 238 5.181009 CACATCTCTAGGCAAAACAGATGA 58.819 41.667 17.58 0.00 42.05 2.92
238 239 5.821470 CACATCTCTAGGCAAAACAGATGAT 59.179 40.000 17.58 4.47 42.05 2.45
239 240 5.821470 ACATCTCTAGGCAAAACAGATGATG 59.179 40.000 17.58 0.00 42.05 3.07
240 241 5.426689 TCTCTAGGCAAAACAGATGATGT 57.573 39.130 0.00 0.00 46.97 3.06
241 242 5.181009 TCTCTAGGCAAAACAGATGATGTG 58.819 41.667 0.00 0.00 43.00 3.21
242 243 4.264253 TCTAGGCAAAACAGATGATGTGG 58.736 43.478 0.00 0.00 43.00 4.17
243 244 1.547372 AGGCAAAACAGATGATGTGGC 59.453 47.619 0.00 0.00 43.00 5.01
244 245 1.621107 GCAAAACAGATGATGTGGCG 58.379 50.000 0.00 0.00 43.00 5.69
245 246 1.199789 GCAAAACAGATGATGTGGCGA 59.800 47.619 0.00 0.00 43.00 5.54
246 247 2.730090 GCAAAACAGATGATGTGGCGAG 60.730 50.000 0.00 0.00 43.00 5.03
247 248 2.479566 AAACAGATGATGTGGCGAGT 57.520 45.000 0.00 0.00 43.00 4.18
248 249 3.610040 AAACAGATGATGTGGCGAGTA 57.390 42.857 0.00 0.00 43.00 2.59
249 250 3.610040 AACAGATGATGTGGCGAGTAA 57.390 42.857 0.00 0.00 43.00 2.24
250 251 3.827008 ACAGATGATGTGGCGAGTAAT 57.173 42.857 0.00 0.00 41.91 1.89
251 252 4.142609 ACAGATGATGTGGCGAGTAATT 57.857 40.909 0.00 0.00 41.91 1.40
252 253 5.276461 ACAGATGATGTGGCGAGTAATTA 57.724 39.130 0.00 0.00 41.91 1.40
253 254 5.670485 ACAGATGATGTGGCGAGTAATTAA 58.330 37.500 0.00 0.00 41.91 1.40
254 255 5.523916 ACAGATGATGTGGCGAGTAATTAAC 59.476 40.000 0.00 0.00 41.91 2.01
255 256 4.745125 AGATGATGTGGCGAGTAATTAACG 59.255 41.667 8.37 8.37 0.00 3.18
256 257 4.112716 TGATGTGGCGAGTAATTAACGA 57.887 40.909 14.60 0.00 0.00 3.85
257 258 4.109766 TGATGTGGCGAGTAATTAACGAG 58.890 43.478 14.60 0.00 0.00 4.18
258 259 2.883574 TGTGGCGAGTAATTAACGAGG 58.116 47.619 14.60 0.00 0.00 4.63
259 260 2.492881 TGTGGCGAGTAATTAACGAGGA 59.507 45.455 14.60 0.00 0.00 3.71
260 261 3.056678 TGTGGCGAGTAATTAACGAGGAA 60.057 43.478 14.60 0.00 0.00 3.36
261 262 3.928375 GTGGCGAGTAATTAACGAGGAAA 59.072 43.478 14.60 0.00 0.00 3.13
262 263 4.032558 GTGGCGAGTAATTAACGAGGAAAG 59.967 45.833 14.60 0.00 0.00 2.62
263 264 4.082081 TGGCGAGTAATTAACGAGGAAAGA 60.082 41.667 14.60 0.00 0.00 2.52
264 265 4.503370 GGCGAGTAATTAACGAGGAAAGAG 59.497 45.833 14.60 0.00 0.00 2.85
265 266 5.338365 GCGAGTAATTAACGAGGAAAGAGA 58.662 41.667 14.60 0.00 0.00 3.10
266 267 5.456173 GCGAGTAATTAACGAGGAAAGAGAG 59.544 44.000 14.60 0.00 0.00 3.20
267 268 6.677431 GCGAGTAATTAACGAGGAAAGAGAGA 60.677 42.308 14.60 0.00 0.00 3.10
268 269 7.419204 CGAGTAATTAACGAGGAAAGAGAGAT 58.581 38.462 7.31 0.00 0.00 2.75
269 270 8.557864 CGAGTAATTAACGAGGAAAGAGAGATA 58.442 37.037 7.31 0.00 0.00 1.98
272 273 9.968870 GTAATTAACGAGGAAAGAGAGATATGT 57.031 33.333 0.00 0.00 0.00 2.29
274 275 8.879342 ATTAACGAGGAAAGAGAGATATGTTG 57.121 34.615 0.00 0.00 0.00 3.33
275 276 5.923733 ACGAGGAAAGAGAGATATGTTGT 57.076 39.130 0.00 0.00 0.00 3.32
276 277 7.406031 AACGAGGAAAGAGAGATATGTTGTA 57.594 36.000 0.00 0.00 0.00 2.41
277 278 7.406031 ACGAGGAAAGAGAGATATGTTGTAA 57.594 36.000 0.00 0.00 0.00 2.41
278 279 7.259161 ACGAGGAAAGAGAGATATGTTGTAAC 58.741 38.462 0.00 0.00 0.00 2.50
279 280 7.093902 ACGAGGAAAGAGAGATATGTTGTAACA 60.094 37.037 0.00 0.00 44.06 2.41
301 302 8.798748 AACATAGATAGTTACTGTAACATCGC 57.201 34.615 27.12 15.53 41.07 4.58
302 303 7.937649 ACATAGATAGTTACTGTAACATCGCA 58.062 34.615 27.12 19.45 41.07 5.10
303 304 7.861372 ACATAGATAGTTACTGTAACATCGCAC 59.139 37.037 27.12 14.29 41.07 5.34
304 305 6.203808 AGATAGTTACTGTAACATCGCACA 57.796 37.500 27.12 8.09 41.07 4.57
305 306 6.806751 AGATAGTTACTGTAACATCGCACAT 58.193 36.000 27.12 10.64 41.07 3.21
306 307 7.937649 AGATAGTTACTGTAACATCGCACATA 58.062 34.615 27.12 12.19 41.07 2.29
307 308 8.076781 AGATAGTTACTGTAACATCGCACATAG 58.923 37.037 27.12 0.00 41.07 2.23
308 309 5.962433 AGTTACTGTAACATCGCACATAGT 58.038 37.500 27.12 4.57 41.07 2.12
309 310 7.092137 AGTTACTGTAACATCGCACATAGTA 57.908 36.000 27.12 0.00 41.07 1.82
310 311 6.971184 AGTTACTGTAACATCGCACATAGTAC 59.029 38.462 27.12 1.09 41.07 2.73
311 312 4.679662 ACTGTAACATCGCACATAGTACC 58.320 43.478 0.00 0.00 0.00 3.34
312 313 4.158949 ACTGTAACATCGCACATAGTACCA 59.841 41.667 0.00 0.00 0.00 3.25
313 314 5.074584 TGTAACATCGCACATAGTACCAA 57.925 39.130 0.00 0.00 0.00 3.67
314 315 5.480205 TGTAACATCGCACATAGTACCAAA 58.520 37.500 0.00 0.00 0.00 3.28
315 316 5.579119 TGTAACATCGCACATAGTACCAAAG 59.421 40.000 0.00 0.00 0.00 2.77
316 317 4.465632 ACATCGCACATAGTACCAAAGA 57.534 40.909 0.00 0.00 0.00 2.52
317 318 4.181578 ACATCGCACATAGTACCAAAGAC 58.818 43.478 0.00 0.00 0.00 3.01
318 319 3.945981 TCGCACATAGTACCAAAGACA 57.054 42.857 0.00 0.00 0.00 3.41
319 320 4.260139 TCGCACATAGTACCAAAGACAA 57.740 40.909 0.00 0.00 0.00 3.18
320 321 4.242475 TCGCACATAGTACCAAAGACAAG 58.758 43.478 0.00 0.00 0.00 3.16
321 322 4.021807 TCGCACATAGTACCAAAGACAAGA 60.022 41.667 0.00 0.00 0.00 3.02
322 323 4.870426 CGCACATAGTACCAAAGACAAGAT 59.130 41.667 0.00 0.00 0.00 2.40
323 324 5.220472 CGCACATAGTACCAAAGACAAGATG 60.220 44.000 0.00 0.00 0.00 2.90
324 325 5.874810 GCACATAGTACCAAAGACAAGATGA 59.125 40.000 0.00 0.00 0.00 2.92
325 326 6.036517 GCACATAGTACCAAAGACAAGATGAG 59.963 42.308 0.00 0.00 0.00 2.90
326 327 7.099764 CACATAGTACCAAAGACAAGATGAGT 58.900 38.462 0.00 0.00 0.00 3.41
327 328 7.276658 CACATAGTACCAAAGACAAGATGAGTC 59.723 40.741 0.00 0.00 36.26 3.36
329 330 8.687242 CATAGTACCAAAGACAAGATGAGTCTA 58.313 37.037 0.00 0.00 45.11 2.59
330 331 6.926313 AGTACCAAAGACAAGATGAGTCTAC 58.074 40.000 0.00 0.00 45.11 2.59
331 332 5.808366 ACCAAAGACAAGATGAGTCTACA 57.192 39.130 0.00 0.00 45.11 2.74
332 333 6.174720 ACCAAAGACAAGATGAGTCTACAA 57.825 37.500 0.00 0.00 45.11 2.41
333 334 5.992217 ACCAAAGACAAGATGAGTCTACAAC 59.008 40.000 0.00 0.00 45.11 3.32
334 335 5.409826 CCAAAGACAAGATGAGTCTACAACC 59.590 44.000 0.00 0.00 45.11 3.77
335 336 6.226787 CAAAGACAAGATGAGTCTACAACCT 58.773 40.000 0.00 0.00 45.11 3.50
336 337 7.378966 CAAAGACAAGATGAGTCTACAACCTA 58.621 38.462 0.00 0.00 45.11 3.08
337 338 7.540474 AAGACAAGATGAGTCTACAACCTAA 57.460 36.000 0.00 0.00 45.11 2.69
338 339 7.726033 AGACAAGATGAGTCTACAACCTAAT 57.274 36.000 0.00 0.00 44.10 1.73
339 340 8.824756 AGACAAGATGAGTCTACAACCTAATA 57.175 34.615 0.00 0.00 44.10 0.98
340 341 9.256228 AGACAAGATGAGTCTACAACCTAATAA 57.744 33.333 0.00 0.00 44.10 1.40
341 342 9.871238 GACAAGATGAGTCTACAACCTAATAAA 57.129 33.333 0.00 0.00 33.30 1.40
348 349 9.653287 TGAGTCTACAACCTAATAAATGAAGTG 57.347 33.333 0.00 0.00 0.00 3.16
349 350 9.654663 GAGTCTACAACCTAATAAATGAAGTGT 57.345 33.333 0.00 0.00 0.00 3.55
352 353 9.444600 TCTACAACCTAATAAATGAAGTGTTCC 57.555 33.333 0.00 0.00 0.00 3.62
353 354 9.226606 CTACAACCTAATAAATGAAGTGTTCCA 57.773 33.333 0.00 0.00 0.00 3.53
354 355 8.650143 ACAACCTAATAAATGAAGTGTTCCAT 57.350 30.769 0.00 0.00 0.00 3.41
355 356 8.522830 ACAACCTAATAAATGAAGTGTTCCATG 58.477 33.333 0.00 0.00 0.00 3.66
356 357 8.739039 CAACCTAATAAATGAAGTGTTCCATGA 58.261 33.333 0.00 0.00 0.00 3.07
357 358 8.281212 ACCTAATAAATGAAGTGTTCCATGAC 57.719 34.615 0.00 0.00 0.00 3.06
358 359 7.888021 ACCTAATAAATGAAGTGTTCCATGACA 59.112 33.333 0.00 0.00 0.00 3.58
370 371 6.109156 TGTTCCATGACACATGTTACTAGT 57.891 37.500 0.00 0.00 0.00 2.57
371 372 6.163476 TGTTCCATGACACATGTTACTAGTC 58.837 40.000 0.00 0.39 0.00 2.59
372 373 5.993748 TCCATGACACATGTTACTAGTCA 57.006 39.130 15.76 15.76 42.62 3.41
374 375 6.946340 TCCATGACACATGTTACTAGTCATT 58.054 36.000 20.33 8.38 44.86 2.57
375 376 6.818142 TCCATGACACATGTTACTAGTCATTG 59.182 38.462 20.33 17.84 44.86 2.82
376 377 6.595326 CCATGACACATGTTACTAGTCATTGT 59.405 38.462 20.33 5.55 44.86 2.71
377 378 7.413328 CCATGACACATGTTACTAGTCATTGTG 60.413 40.741 20.33 18.85 44.86 3.33
378 379 6.754193 TGACACATGTTACTAGTCATTGTGA 58.246 36.000 23.74 11.72 34.59 3.58
379 380 7.331934 ATGACACATGTTACTAGTCATTGTGAC 59.668 37.037 23.74 19.86 44.86 3.67
399 400 9.562408 TTGTGACTAGTCTTATACATCTAGAGG 57.438 37.037 23.01 2.12 35.34 3.69
400 401 8.158132 TGTGACTAGTCTTATACATCTAGAGGG 58.842 40.741 23.01 0.88 35.34 4.30
401 402 8.377034 GTGACTAGTCTTATACATCTAGAGGGA 58.623 40.741 23.01 0.00 35.34 4.20
402 403 8.598916 TGACTAGTCTTATACATCTAGAGGGAG 58.401 40.741 23.01 1.72 35.34 4.30
403 404 7.399634 ACTAGTCTTATACATCTAGAGGGAGC 58.600 42.308 9.55 0.00 35.34 4.70
404 405 5.250200 AGTCTTATACATCTAGAGGGAGCG 58.750 45.833 9.55 0.00 0.00 5.03
405 406 5.013287 AGTCTTATACATCTAGAGGGAGCGA 59.987 44.000 9.55 0.00 0.00 4.93
406 407 5.353123 GTCTTATACATCTAGAGGGAGCGAG 59.647 48.000 9.55 0.25 0.00 5.03
407 408 3.799432 ATACATCTAGAGGGAGCGAGT 57.201 47.619 9.55 0.00 0.00 4.18
408 409 4.912317 ATACATCTAGAGGGAGCGAGTA 57.088 45.455 9.55 0.00 0.00 2.59
409 410 3.134574 ACATCTAGAGGGAGCGAGTAG 57.865 52.381 9.55 0.00 0.00 2.57
410 411 2.440253 ACATCTAGAGGGAGCGAGTAGT 59.560 50.000 9.55 0.00 0.00 2.73
411 412 3.647113 ACATCTAGAGGGAGCGAGTAGTA 59.353 47.826 9.55 0.00 0.00 1.82
412 413 4.287585 ACATCTAGAGGGAGCGAGTAGTAT 59.712 45.833 9.55 0.00 0.00 2.12
413 414 5.484644 ACATCTAGAGGGAGCGAGTAGTATA 59.515 44.000 9.55 0.00 0.00 1.47
414 415 6.013553 ACATCTAGAGGGAGCGAGTAGTATAA 60.014 42.308 9.55 0.00 0.00 0.98
415 416 6.040209 TCTAGAGGGAGCGAGTAGTATAAG 57.960 45.833 0.00 0.00 0.00 1.73
416 417 4.710313 AGAGGGAGCGAGTAGTATAAGT 57.290 45.455 0.00 0.00 0.00 2.24
417 418 5.051409 AGAGGGAGCGAGTAGTATAAGTT 57.949 43.478 0.00 0.00 0.00 2.66
418 419 6.185114 AGAGGGAGCGAGTAGTATAAGTTA 57.815 41.667 0.00 0.00 0.00 2.24
419 420 5.997129 AGAGGGAGCGAGTAGTATAAGTTAC 59.003 44.000 0.00 0.00 0.00 2.50
420 421 5.939447 AGGGAGCGAGTAGTATAAGTTACT 58.061 41.667 0.00 0.00 33.00 2.24
421 422 5.997129 AGGGAGCGAGTAGTATAAGTTACTC 59.003 44.000 8.97 8.97 41.38 2.59
422 423 5.181056 GGGAGCGAGTAGTATAAGTTACTCC 59.819 48.000 11.67 0.00 41.64 3.85
423 424 5.181056 GGAGCGAGTAGTATAAGTTACTCCC 59.819 48.000 11.67 6.10 41.64 4.30
424 425 5.069318 AGCGAGTAGTATAAGTTACTCCCC 58.931 45.833 11.67 6.33 41.64 4.81
425 426 4.823989 GCGAGTAGTATAAGTTACTCCCCA 59.176 45.833 11.67 0.00 41.64 4.96
426 427 5.300286 GCGAGTAGTATAAGTTACTCCCCAA 59.700 44.000 11.67 0.00 41.64 4.12
427 428 6.015603 GCGAGTAGTATAAGTTACTCCCCAAT 60.016 42.308 11.67 0.00 41.64 3.16
428 429 7.175641 GCGAGTAGTATAAGTTACTCCCCAATA 59.824 40.741 11.67 0.00 41.64 1.90
429 430 9.240734 CGAGTAGTATAAGTTACTCCCCAATAT 57.759 37.037 11.67 0.00 41.64 1.28
438 439 7.750947 AGTTACTCCCCAATATGAAAGTAGT 57.249 36.000 0.00 0.00 0.00 2.73
439 440 8.849543 AGTTACTCCCCAATATGAAAGTAGTA 57.150 34.615 0.00 0.00 0.00 1.82
440 441 8.925338 AGTTACTCCCCAATATGAAAGTAGTAG 58.075 37.037 0.00 0.00 0.00 2.57
441 442 6.176014 ACTCCCCAATATGAAAGTAGTAGC 57.824 41.667 0.00 0.00 0.00 3.58
442 443 5.665812 ACTCCCCAATATGAAAGTAGTAGCA 59.334 40.000 0.00 0.00 0.00 3.49
577 584 5.528690 TGCACATAAAGAATCACATCTAGCC 59.471 40.000 0.00 0.00 0.00 3.93
1271 1285 3.980134 CACAATCACAATGCTTGCGTTAA 59.020 39.130 0.00 0.00 27.30 2.01
1278 1292 4.793216 CACAATGCTTGCGTTAATTCTACC 59.207 41.667 0.00 0.00 0.00 3.18
1286 1300 3.057734 GCGTTAATTCTACCTCCATCCG 58.942 50.000 0.00 0.00 0.00 4.18
1293 1307 1.001120 TACCTCCATCCGCTCCACA 59.999 57.895 0.00 0.00 0.00 4.17
1304 1318 2.434336 TCCGCTCCACATGCTAATTAGT 59.566 45.455 13.91 0.00 0.00 2.24
1305 1319 3.639561 TCCGCTCCACATGCTAATTAGTA 59.360 43.478 13.91 10.00 0.00 1.82
1306 1320 3.741344 CCGCTCCACATGCTAATTAGTAC 59.259 47.826 13.91 0.00 0.00 2.73
1603 1617 4.857251 GCCATGTAGTAGGCGCTT 57.143 55.556 7.64 0.52 41.70 4.68
1772 1786 0.242825 CTGCCACATTGGTTGAGCAG 59.757 55.000 0.00 0.00 44.05 4.24
1775 1789 1.608055 CCACATTGGTTGAGCAGACA 58.392 50.000 0.00 0.00 31.35 3.41
1777 1791 3.346315 CCACATTGGTTGAGCAGACATA 58.654 45.455 0.00 0.00 31.35 2.29
1835 1849 2.161012 AGAACGTTGATCGAGAAGCGTA 59.839 45.455 5.00 0.00 42.86 4.42
1838 1852 3.106672 ACGTTGATCGAGAAGCGTATTC 58.893 45.455 9.69 0.00 42.86 1.75
1840 1854 3.546271 CGTTGATCGAGAAGCGTATTCAA 59.454 43.478 0.00 0.00 42.86 2.69
1868 1882 0.726827 GAACGAATCTTGCATGCGGA 59.273 50.000 14.09 14.07 0.00 5.54
2270 2293 4.351938 CGCGTCACCCCGAACTCA 62.352 66.667 0.00 0.00 0.00 3.41
2273 2296 2.346365 GTCACCCCGAACTCACCC 59.654 66.667 0.00 0.00 0.00 4.61
2378 2401 4.476752 GCGGGGCCGTCACCATTA 62.477 66.667 0.00 0.00 42.09 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.221262 AGTGGTTAGTTCATTGCATGCAAT 59.779 37.500 34.78 34.78 46.35 3.56
8 9 3.573538 AGTGGTTAGTTCATTGCATGCAA 59.426 39.130 33.57 33.57 40.47 4.08
9 10 3.057386 CAGTGGTTAGTTCATTGCATGCA 60.057 43.478 18.46 18.46 0.00 3.96
10 11 3.504863 CAGTGGTTAGTTCATTGCATGC 58.495 45.455 11.82 11.82 0.00 4.06
11 12 3.504863 GCAGTGGTTAGTTCATTGCATG 58.495 45.455 6.68 0.00 44.01 4.06
12 13 3.855689 GCAGTGGTTAGTTCATTGCAT 57.144 42.857 6.68 0.00 44.01 3.96
14 15 3.057315 ACATGCAGTGGTTAGTTCATTGC 60.057 43.478 0.00 4.92 44.56 3.56
15 16 4.669965 CGACATGCAGTGGTTAGTTCATTG 60.670 45.833 0.00 0.00 0.00 2.82
16 17 3.436704 CGACATGCAGTGGTTAGTTCATT 59.563 43.478 0.00 0.00 0.00 2.57
17 18 3.002791 CGACATGCAGTGGTTAGTTCAT 58.997 45.455 0.00 0.00 0.00 2.57
18 19 2.224185 ACGACATGCAGTGGTTAGTTCA 60.224 45.455 0.00 0.00 35.47 3.18
19 20 2.157668 CACGACATGCAGTGGTTAGTTC 59.842 50.000 11.93 0.00 37.03 3.01
20 21 2.143122 CACGACATGCAGTGGTTAGTT 58.857 47.619 11.93 0.00 37.03 2.24
21 22 1.070134 ACACGACATGCAGTGGTTAGT 59.930 47.619 20.60 1.96 42.25 2.24
22 23 1.795768 ACACGACATGCAGTGGTTAG 58.204 50.000 20.60 1.38 42.25 2.34
23 24 2.248280 AACACGACATGCAGTGGTTA 57.752 45.000 20.60 0.00 42.25 2.85
24 25 1.388547 AAACACGACATGCAGTGGTT 58.611 45.000 20.60 18.36 42.73 3.67
25 26 0.662619 CAAACACGACATGCAGTGGT 59.337 50.000 20.60 14.15 42.25 4.16
26 27 0.040157 CCAAACACGACATGCAGTGG 60.040 55.000 20.60 3.36 42.25 4.00
27 28 0.662619 ACCAAACACGACATGCAGTG 59.337 50.000 16.62 16.62 43.46 3.66
28 29 2.143122 CTACCAAACACGACATGCAGT 58.857 47.619 0.00 0.00 0.00 4.40
29 30 2.143122 ACTACCAAACACGACATGCAG 58.857 47.619 0.00 0.00 0.00 4.41
30 31 2.248280 ACTACCAAACACGACATGCA 57.752 45.000 0.00 0.00 0.00 3.96
31 32 3.002862 TGAAACTACCAAACACGACATGC 59.997 43.478 0.00 0.00 0.00 4.06
32 33 4.804608 TGAAACTACCAAACACGACATG 57.195 40.909 0.00 0.00 0.00 3.21
33 34 4.879545 ACTTGAAACTACCAAACACGACAT 59.120 37.500 0.00 0.00 0.00 3.06
34 35 4.255301 ACTTGAAACTACCAAACACGACA 58.745 39.130 0.00 0.00 0.00 4.35
35 36 4.330620 TGACTTGAAACTACCAAACACGAC 59.669 41.667 0.00 0.00 0.00 4.34
36 37 4.505808 TGACTTGAAACTACCAAACACGA 58.494 39.130 0.00 0.00 0.00 4.35
37 38 4.868450 TGACTTGAAACTACCAAACACG 57.132 40.909 0.00 0.00 0.00 4.49
38 39 9.575783 TTTTAATGACTTGAAACTACCAAACAC 57.424 29.630 0.00 0.00 0.00 3.32
39 40 9.796120 CTTTTAATGACTTGAAACTACCAAACA 57.204 29.630 0.00 0.00 0.00 2.83
40 41 8.752254 GCTTTTAATGACTTGAAACTACCAAAC 58.248 33.333 0.00 0.00 0.00 2.93
41 42 8.470805 TGCTTTTAATGACTTGAAACTACCAAA 58.529 29.630 0.00 0.00 0.00 3.28
42 43 8.001881 TGCTTTTAATGACTTGAAACTACCAA 57.998 30.769 0.00 0.00 0.00 3.67
43 44 7.575414 TGCTTTTAATGACTTGAAACTACCA 57.425 32.000 0.00 0.00 0.00 3.25
44 45 7.542130 CCATGCTTTTAATGACTTGAAACTACC 59.458 37.037 0.00 0.00 0.00 3.18
45 46 8.296713 TCCATGCTTTTAATGACTTGAAACTAC 58.703 33.333 0.00 0.00 0.00 2.73
46 47 8.296713 GTCCATGCTTTTAATGACTTGAAACTA 58.703 33.333 0.00 0.00 0.00 2.24
47 48 7.147976 GTCCATGCTTTTAATGACTTGAAACT 58.852 34.615 0.00 0.00 0.00 2.66
48 49 6.922957 TGTCCATGCTTTTAATGACTTGAAAC 59.077 34.615 0.00 0.00 0.00 2.78
49 50 6.922957 GTGTCCATGCTTTTAATGACTTGAAA 59.077 34.615 0.00 0.00 0.00 2.69
50 51 6.446318 GTGTCCATGCTTTTAATGACTTGAA 58.554 36.000 0.00 0.00 0.00 2.69
51 52 5.048083 GGTGTCCATGCTTTTAATGACTTGA 60.048 40.000 0.00 0.00 0.00 3.02
52 53 5.047802 AGGTGTCCATGCTTTTAATGACTTG 60.048 40.000 0.00 0.00 0.00 3.16
53 54 5.079643 AGGTGTCCATGCTTTTAATGACTT 58.920 37.500 0.00 0.00 0.00 3.01
54 55 4.666512 AGGTGTCCATGCTTTTAATGACT 58.333 39.130 0.00 0.00 0.00 3.41
55 56 4.702131 AGAGGTGTCCATGCTTTTAATGAC 59.298 41.667 0.00 0.00 0.00 3.06
56 57 4.922206 AGAGGTGTCCATGCTTTTAATGA 58.078 39.130 0.00 0.00 0.00 2.57
57 58 5.649782 AAGAGGTGTCCATGCTTTTAATG 57.350 39.130 0.00 0.00 0.00 1.90
58 59 7.961326 AATAAGAGGTGTCCATGCTTTTAAT 57.039 32.000 0.00 0.00 0.00 1.40
59 60 7.669722 AGAAATAAGAGGTGTCCATGCTTTTAA 59.330 33.333 0.00 0.00 0.00 1.52
60 61 7.175104 AGAAATAAGAGGTGTCCATGCTTTTA 58.825 34.615 0.00 0.00 0.00 1.52
61 62 6.012745 AGAAATAAGAGGTGTCCATGCTTTT 58.987 36.000 0.00 0.00 0.00 2.27
62 63 5.574188 AGAAATAAGAGGTGTCCATGCTTT 58.426 37.500 0.00 0.00 0.00 3.51
63 64 5.184892 AGAAATAAGAGGTGTCCATGCTT 57.815 39.130 0.00 0.00 0.00 3.91
64 65 4.851639 AGAAATAAGAGGTGTCCATGCT 57.148 40.909 0.00 0.00 0.00 3.79
65 66 7.420800 CAATAAGAAATAAGAGGTGTCCATGC 58.579 38.462 0.00 0.00 0.00 4.06
66 67 7.557719 ACCAATAAGAAATAAGAGGTGTCCATG 59.442 37.037 0.00 0.00 0.00 3.66
67 68 7.643123 ACCAATAAGAAATAAGAGGTGTCCAT 58.357 34.615 0.00 0.00 0.00 3.41
68 69 7.027874 ACCAATAAGAAATAAGAGGTGTCCA 57.972 36.000 0.00 0.00 0.00 4.02
69 70 7.610305 TCAACCAATAAGAAATAAGAGGTGTCC 59.390 37.037 0.00 0.00 0.00 4.02
70 71 8.561738 TCAACCAATAAGAAATAAGAGGTGTC 57.438 34.615 0.00 0.00 0.00 3.67
83 84 9.513906 TGTTTCTTGACATATCAACCAATAAGA 57.486 29.630 0.00 0.00 40.01 2.10
87 88 9.829507 TTTTTGTTTCTTGACATATCAACCAAT 57.170 25.926 0.00 0.00 40.01 3.16
110 111 7.627726 GCGGTGCATTAACTTATACCTCTTTTT 60.628 37.037 0.00 0.00 0.00 1.94
111 112 6.183360 GCGGTGCATTAACTTATACCTCTTTT 60.183 38.462 0.00 0.00 0.00 2.27
112 113 5.296035 GCGGTGCATTAACTTATACCTCTTT 59.704 40.000 0.00 0.00 0.00 2.52
113 114 4.814771 GCGGTGCATTAACTTATACCTCTT 59.185 41.667 0.00 0.00 0.00 2.85
114 115 4.377897 GCGGTGCATTAACTTATACCTCT 58.622 43.478 0.00 0.00 0.00 3.69
115 116 3.183775 CGCGGTGCATTAACTTATACCTC 59.816 47.826 0.00 0.00 0.00 3.85
116 117 3.128349 CGCGGTGCATTAACTTATACCT 58.872 45.455 0.00 0.00 0.00 3.08
117 118 2.349155 GCGCGGTGCATTAACTTATACC 60.349 50.000 8.83 0.00 45.45 2.73
118 119 2.899977 GCGCGGTGCATTAACTTATAC 58.100 47.619 8.83 0.00 45.45 1.47
130 131 0.388006 AAAACATTTAGGCGCGGTGC 60.388 50.000 8.83 4.64 45.38 5.01
131 132 1.335935 CAAAACATTTAGGCGCGGTG 58.664 50.000 8.83 0.00 0.00 4.94
132 133 0.242555 CCAAAACATTTAGGCGCGGT 59.757 50.000 8.83 0.00 0.00 5.68
133 134 0.523966 TCCAAAACATTTAGGCGCGG 59.476 50.000 8.83 0.00 0.00 6.46
134 135 2.339728 TTCCAAAACATTTAGGCGCG 57.660 45.000 0.00 0.00 0.00 6.86
135 136 6.902224 AATAATTCCAAAACATTTAGGCGC 57.098 33.333 0.00 0.00 0.00 6.53
136 137 7.333174 ACCAAATAATTCCAAAACATTTAGGCG 59.667 33.333 0.00 0.00 0.00 5.52
137 138 8.560355 ACCAAATAATTCCAAAACATTTAGGC 57.440 30.769 0.00 0.00 0.00 3.93
141 142 9.943163 CGAAAACCAAATAATTCCAAAACATTT 57.057 25.926 0.00 0.00 0.00 2.32
142 143 9.114952 ACGAAAACCAAATAATTCCAAAACATT 57.885 25.926 0.00 0.00 0.00 2.71
143 144 8.669946 ACGAAAACCAAATAATTCCAAAACAT 57.330 26.923 0.00 0.00 0.00 2.71
144 145 9.595823 TTACGAAAACCAAATAATTCCAAAACA 57.404 25.926 0.00 0.00 0.00 2.83
148 149 9.632807 CATCTTACGAAAACCAAATAATTCCAA 57.367 29.630 0.00 0.00 0.00 3.53
149 150 9.015367 TCATCTTACGAAAACCAAATAATTCCA 57.985 29.630 0.00 0.00 0.00 3.53
150 151 9.285770 GTCATCTTACGAAAACCAAATAATTCC 57.714 33.333 0.00 0.00 0.00 3.01
166 167 9.720809 CCGTCTAGGTGTGTAAGTCATCTTACG 62.721 48.148 11.67 0.00 44.84 3.18
167 168 6.677431 CCGTCTAGGTGTGTAAGTCATCTTAC 60.677 46.154 10.12 10.12 43.75 2.34
168 169 5.356190 CCGTCTAGGTGTGTAAGTCATCTTA 59.644 44.000 0.00 0.00 33.66 2.10
169 170 4.158025 CCGTCTAGGTGTGTAAGTCATCTT 59.842 45.833 0.00 0.00 35.02 2.40
170 171 3.695060 CCGTCTAGGTGTGTAAGTCATCT 59.305 47.826 0.00 0.00 34.51 2.90
171 172 3.693085 TCCGTCTAGGTGTGTAAGTCATC 59.307 47.826 0.00 0.00 41.99 2.92
172 173 3.693807 TCCGTCTAGGTGTGTAAGTCAT 58.306 45.455 0.00 0.00 41.99 3.06
173 174 3.079578 CTCCGTCTAGGTGTGTAAGTCA 58.920 50.000 0.00 0.00 41.99 3.41
174 175 2.422832 CCTCCGTCTAGGTGTGTAAGTC 59.577 54.545 0.00 0.00 41.99 3.01
175 176 2.040813 TCCTCCGTCTAGGTGTGTAAGT 59.959 50.000 0.00 0.00 41.99 2.24
176 177 2.719739 TCCTCCGTCTAGGTGTGTAAG 58.280 52.381 0.00 0.00 41.99 2.34
177 178 2.885135 TCCTCCGTCTAGGTGTGTAA 57.115 50.000 0.00 0.00 41.99 2.41
178 179 2.040813 ACTTCCTCCGTCTAGGTGTGTA 59.959 50.000 0.00 0.00 41.99 2.90
179 180 1.203025 ACTTCCTCCGTCTAGGTGTGT 60.203 52.381 0.00 0.00 41.99 3.72
180 181 1.546961 ACTTCCTCCGTCTAGGTGTG 58.453 55.000 0.00 0.00 41.99 3.82
181 182 2.356947 CCTACTTCCTCCGTCTAGGTGT 60.357 54.545 0.00 0.00 41.99 4.16
182 183 2.299521 CCTACTTCCTCCGTCTAGGTG 58.700 57.143 0.00 0.00 41.99 4.00
183 184 1.921748 ACCTACTTCCTCCGTCTAGGT 59.078 52.381 0.00 0.00 41.99 3.08
184 185 2.299521 CACCTACTTCCTCCGTCTAGG 58.700 57.143 0.00 0.00 42.97 3.02
185 186 2.299521 CCACCTACTTCCTCCGTCTAG 58.700 57.143 0.00 0.00 0.00 2.43
186 187 1.637553 ACCACCTACTTCCTCCGTCTA 59.362 52.381 0.00 0.00 0.00 2.59
187 188 0.408700 ACCACCTACTTCCTCCGTCT 59.591 55.000 0.00 0.00 0.00 4.18
188 189 2.134789 TACCACCTACTTCCTCCGTC 57.865 55.000 0.00 0.00 0.00 4.79
189 190 2.174360 GTTACCACCTACTTCCTCCGT 58.826 52.381 0.00 0.00 0.00 4.69
190 191 2.173519 TGTTACCACCTACTTCCTCCG 58.826 52.381 0.00 0.00 0.00 4.63
191 192 3.773119 TGATGTTACCACCTACTTCCTCC 59.227 47.826 0.00 0.00 0.00 4.30
192 193 4.222145 TGTGATGTTACCACCTACTTCCTC 59.778 45.833 0.00 0.00 33.80 3.71
193 194 4.020485 GTGTGATGTTACCACCTACTTCCT 60.020 45.833 0.00 0.00 33.80 3.36
194 195 4.251268 GTGTGATGTTACCACCTACTTCC 58.749 47.826 0.00 0.00 33.80 3.46
195 196 4.890088 TGTGTGATGTTACCACCTACTTC 58.110 43.478 0.00 0.00 33.80 3.01
196 197 4.967084 TGTGTGATGTTACCACCTACTT 57.033 40.909 0.00 0.00 33.80 2.24
197 198 4.777896 AGATGTGTGATGTTACCACCTACT 59.222 41.667 0.00 0.00 33.80 2.57
198 199 5.086104 AGATGTGTGATGTTACCACCTAC 57.914 43.478 0.00 0.00 33.80 3.18
199 200 5.023452 AGAGATGTGTGATGTTACCACCTA 58.977 41.667 0.00 0.00 33.80 3.08
200 201 3.840666 AGAGATGTGTGATGTTACCACCT 59.159 43.478 0.00 0.00 33.80 4.00
201 202 4.207891 AGAGATGTGTGATGTTACCACC 57.792 45.455 0.00 0.00 33.80 4.61
202 203 5.352284 CCTAGAGATGTGTGATGTTACCAC 58.648 45.833 0.00 0.00 35.23 4.16
203 204 4.141937 GCCTAGAGATGTGTGATGTTACCA 60.142 45.833 0.00 0.00 0.00 3.25
204 205 4.141937 TGCCTAGAGATGTGTGATGTTACC 60.142 45.833 0.00 0.00 0.00 2.85
205 206 5.011090 TGCCTAGAGATGTGTGATGTTAC 57.989 43.478 0.00 0.00 0.00 2.50
206 207 5.675684 TTGCCTAGAGATGTGTGATGTTA 57.324 39.130 0.00 0.00 0.00 2.41
207 208 4.558226 TTGCCTAGAGATGTGTGATGTT 57.442 40.909 0.00 0.00 0.00 2.71
208 209 4.558226 TTTGCCTAGAGATGTGTGATGT 57.442 40.909 0.00 0.00 0.00 3.06
209 210 4.696877 TGTTTTGCCTAGAGATGTGTGATG 59.303 41.667 0.00 0.00 0.00 3.07
210 211 4.910195 TGTTTTGCCTAGAGATGTGTGAT 58.090 39.130 0.00 0.00 0.00 3.06
211 212 4.040339 TCTGTTTTGCCTAGAGATGTGTGA 59.960 41.667 0.00 0.00 0.00 3.58
212 213 4.318332 TCTGTTTTGCCTAGAGATGTGTG 58.682 43.478 0.00 0.00 0.00 3.82
213 214 4.623932 TCTGTTTTGCCTAGAGATGTGT 57.376 40.909 0.00 0.00 0.00 3.72
214 215 5.181009 TCATCTGTTTTGCCTAGAGATGTG 58.819 41.667 12.52 0.00 40.54 3.21
215 216 5.426689 TCATCTGTTTTGCCTAGAGATGT 57.573 39.130 12.52 0.00 40.54 3.06
216 217 5.821470 ACATCATCTGTTTTGCCTAGAGATG 59.179 40.000 8.38 8.38 40.88 2.90
217 218 5.821470 CACATCATCTGTTTTGCCTAGAGAT 59.179 40.000 0.00 0.00 35.29 2.75
218 219 5.181009 CACATCATCTGTTTTGCCTAGAGA 58.819 41.667 0.00 0.00 35.29 3.10
219 220 4.334759 CCACATCATCTGTTTTGCCTAGAG 59.665 45.833 0.00 0.00 35.29 2.43
220 221 4.264253 CCACATCATCTGTTTTGCCTAGA 58.736 43.478 0.00 0.00 35.29 2.43
221 222 3.181493 GCCACATCATCTGTTTTGCCTAG 60.181 47.826 0.00 0.00 35.29 3.02
222 223 2.754552 GCCACATCATCTGTTTTGCCTA 59.245 45.455 0.00 0.00 35.29 3.93
223 224 1.547372 GCCACATCATCTGTTTTGCCT 59.453 47.619 0.00 0.00 35.29 4.75
224 225 1.733389 CGCCACATCATCTGTTTTGCC 60.733 52.381 0.00 0.00 35.29 4.52
225 226 1.199789 TCGCCACATCATCTGTTTTGC 59.800 47.619 0.00 0.00 35.29 3.68
226 227 2.485426 ACTCGCCACATCATCTGTTTTG 59.515 45.455 0.00 0.00 35.29 2.44
227 228 2.783135 ACTCGCCACATCATCTGTTTT 58.217 42.857 0.00 0.00 35.29 2.43
228 229 2.479566 ACTCGCCACATCATCTGTTT 57.520 45.000 0.00 0.00 35.29 2.83
229 230 3.610040 TTACTCGCCACATCATCTGTT 57.390 42.857 0.00 0.00 35.29 3.16
230 231 3.827008 ATTACTCGCCACATCATCTGT 57.173 42.857 0.00 0.00 39.20 3.41
231 232 5.332581 CGTTAATTACTCGCCACATCATCTG 60.333 44.000 0.00 0.00 0.00 2.90
232 233 4.745125 CGTTAATTACTCGCCACATCATCT 59.255 41.667 0.00 0.00 0.00 2.90
233 234 4.743151 TCGTTAATTACTCGCCACATCATC 59.257 41.667 4.88 0.00 0.00 2.92
234 235 4.689071 TCGTTAATTACTCGCCACATCAT 58.311 39.130 4.88 0.00 0.00 2.45
235 236 4.109766 CTCGTTAATTACTCGCCACATCA 58.890 43.478 4.88 0.00 0.00 3.07
236 237 3.489785 CCTCGTTAATTACTCGCCACATC 59.510 47.826 4.88 0.00 0.00 3.06
237 238 3.131577 TCCTCGTTAATTACTCGCCACAT 59.868 43.478 4.88 0.00 0.00 3.21
238 239 2.492881 TCCTCGTTAATTACTCGCCACA 59.507 45.455 4.88 0.00 0.00 4.17
239 240 3.155093 TCCTCGTTAATTACTCGCCAC 57.845 47.619 4.88 0.00 0.00 5.01
240 241 3.872511 TTCCTCGTTAATTACTCGCCA 57.127 42.857 4.88 0.00 0.00 5.69
241 242 4.427312 TCTTTCCTCGTTAATTACTCGCC 58.573 43.478 4.88 0.00 0.00 5.54
242 243 5.338365 TCTCTTTCCTCGTTAATTACTCGC 58.662 41.667 4.88 0.00 0.00 5.03
243 244 6.783162 TCTCTCTTTCCTCGTTAATTACTCG 58.217 40.000 3.69 3.69 0.00 4.18
246 247 9.968870 ACATATCTCTCTTTCCTCGTTAATTAC 57.031 33.333 0.00 0.00 0.00 1.89
248 249 9.319143 CAACATATCTCTCTTTCCTCGTTAATT 57.681 33.333 0.00 0.00 0.00 1.40
249 250 8.478877 ACAACATATCTCTCTTTCCTCGTTAAT 58.521 33.333 0.00 0.00 0.00 1.40
250 251 7.837863 ACAACATATCTCTCTTTCCTCGTTAA 58.162 34.615 0.00 0.00 0.00 2.01
251 252 7.406031 ACAACATATCTCTCTTTCCTCGTTA 57.594 36.000 0.00 0.00 0.00 3.18
252 253 6.287589 ACAACATATCTCTCTTTCCTCGTT 57.712 37.500 0.00 0.00 0.00 3.85
253 254 5.923733 ACAACATATCTCTCTTTCCTCGT 57.076 39.130 0.00 0.00 0.00 4.18
254 255 7.258441 TGTTACAACATATCTCTCTTTCCTCG 58.742 38.462 0.00 0.00 33.17 4.63
275 276 9.888878 GCGATGTTACAGTAACTATCTATGTTA 57.111 33.333 21.56 0.95 39.38 2.41
276 277 8.410912 TGCGATGTTACAGTAACTATCTATGTT 58.589 33.333 21.56 0.00 39.38 2.71
277 278 7.861372 GTGCGATGTTACAGTAACTATCTATGT 59.139 37.037 21.56 0.00 39.38 2.29
278 279 7.860872 TGTGCGATGTTACAGTAACTATCTATG 59.139 37.037 21.56 11.98 39.38 2.23
279 280 7.937649 TGTGCGATGTTACAGTAACTATCTAT 58.062 34.615 21.56 8.59 39.38 1.98
280 281 7.324354 TGTGCGATGTTACAGTAACTATCTA 57.676 36.000 21.56 12.19 39.38 1.98
281 282 6.203808 TGTGCGATGTTACAGTAACTATCT 57.796 37.500 21.56 6.57 39.38 1.98
282 283 7.861372 ACTATGTGCGATGTTACAGTAACTATC 59.139 37.037 21.56 19.16 39.38 2.08
283 284 7.713750 ACTATGTGCGATGTTACAGTAACTAT 58.286 34.615 21.56 14.09 39.38 2.12
284 285 7.092137 ACTATGTGCGATGTTACAGTAACTA 57.908 36.000 21.56 10.50 39.38 2.24
285 286 5.962433 ACTATGTGCGATGTTACAGTAACT 58.038 37.500 21.56 9.41 39.38 2.24
286 287 6.197842 GGTACTATGTGCGATGTTACAGTAAC 59.802 42.308 15.58 15.58 39.11 2.50
287 288 6.127675 TGGTACTATGTGCGATGTTACAGTAA 60.128 38.462 0.00 0.00 0.00 2.24
288 289 5.357596 TGGTACTATGTGCGATGTTACAGTA 59.642 40.000 0.00 0.00 0.00 2.74
289 290 4.158949 TGGTACTATGTGCGATGTTACAGT 59.841 41.667 0.00 0.00 0.00 3.55
290 291 4.678622 TGGTACTATGTGCGATGTTACAG 58.321 43.478 0.00 0.00 0.00 2.74
291 292 4.722361 TGGTACTATGTGCGATGTTACA 57.278 40.909 0.00 0.00 0.00 2.41
292 293 5.808540 TCTTTGGTACTATGTGCGATGTTAC 59.191 40.000 0.00 0.00 0.00 2.50
293 294 5.808540 GTCTTTGGTACTATGTGCGATGTTA 59.191 40.000 0.00 0.00 0.00 2.41
294 295 4.630069 GTCTTTGGTACTATGTGCGATGTT 59.370 41.667 0.00 0.00 0.00 2.71
295 296 4.181578 GTCTTTGGTACTATGTGCGATGT 58.818 43.478 0.00 0.00 0.00 3.06
296 297 4.180817 TGTCTTTGGTACTATGTGCGATG 58.819 43.478 0.00 0.00 0.00 3.84
297 298 4.465632 TGTCTTTGGTACTATGTGCGAT 57.534 40.909 0.00 0.00 0.00 4.58
298 299 3.945981 TGTCTTTGGTACTATGTGCGA 57.054 42.857 0.00 0.00 0.00 5.10
299 300 4.242475 TCTTGTCTTTGGTACTATGTGCG 58.758 43.478 0.00 0.00 0.00 5.34
300 301 5.874810 TCATCTTGTCTTTGGTACTATGTGC 59.125 40.000 0.00 0.00 0.00 4.57
301 302 7.099764 ACTCATCTTGTCTTTGGTACTATGTG 58.900 38.462 0.00 0.00 0.00 3.21
302 303 7.179338 AGACTCATCTTGTCTTTGGTACTATGT 59.821 37.037 0.00 0.00 41.45 2.29
303 304 7.551585 AGACTCATCTTGTCTTTGGTACTATG 58.448 38.462 0.00 0.00 41.45 2.23
304 305 7.726033 AGACTCATCTTGTCTTTGGTACTAT 57.274 36.000 0.00 0.00 41.45 2.12
305 306 7.668469 TGTAGACTCATCTTGTCTTTGGTACTA 59.332 37.037 1.67 0.00 41.45 1.82
306 307 6.493802 TGTAGACTCATCTTGTCTTTGGTACT 59.506 38.462 1.67 0.00 41.45 2.73
307 308 6.688578 TGTAGACTCATCTTGTCTTTGGTAC 58.311 40.000 1.67 0.00 41.45 3.34
308 309 6.911250 TGTAGACTCATCTTGTCTTTGGTA 57.089 37.500 1.67 0.00 41.45 3.25
309 310 5.808366 TGTAGACTCATCTTGTCTTTGGT 57.192 39.130 1.67 0.00 41.45 3.67
310 311 5.409826 GGTTGTAGACTCATCTTGTCTTTGG 59.590 44.000 1.67 0.00 41.45 3.28
311 312 6.226787 AGGTTGTAGACTCATCTTGTCTTTG 58.773 40.000 1.67 0.00 41.45 2.77
312 313 6.426646 AGGTTGTAGACTCATCTTGTCTTT 57.573 37.500 1.67 0.00 41.45 2.52
313 314 7.540474 TTAGGTTGTAGACTCATCTTGTCTT 57.460 36.000 1.67 0.00 41.45 3.01
314 315 7.726033 ATTAGGTTGTAGACTCATCTTGTCT 57.274 36.000 0.00 0.00 45.48 3.41
315 316 9.871238 TTTATTAGGTTGTAGACTCATCTTGTC 57.129 33.333 0.00 0.00 36.29 3.18
322 323 9.653287 CACTTCATTTATTAGGTTGTAGACTCA 57.347 33.333 0.00 0.00 0.00 3.41
323 324 9.654663 ACACTTCATTTATTAGGTTGTAGACTC 57.345 33.333 0.00 0.00 0.00 3.36
326 327 9.444600 GGAACACTTCATTTATTAGGTTGTAGA 57.555 33.333 0.00 0.00 0.00 2.59
327 328 9.226606 TGGAACACTTCATTTATTAGGTTGTAG 57.773 33.333 0.00 0.00 0.00 2.74
347 348 7.527028 ATGACTAGTAACATGTGTCATGGAACA 60.527 37.037 21.48 7.55 43.82 3.18
348 349 6.163476 TGACTAGTAACATGTGTCATGGAAC 58.837 40.000 10.89 10.26 33.45 3.62
349 350 6.353404 TGACTAGTAACATGTGTCATGGAA 57.647 37.500 10.89 0.00 33.45 3.53
350 351 5.993748 TGACTAGTAACATGTGTCATGGA 57.006 39.130 10.89 0.00 33.45 3.41
351 352 6.595326 ACAATGACTAGTAACATGTGTCATGG 59.405 38.462 22.37 21.62 44.44 3.66
352 353 7.331687 TCACAATGACTAGTAACATGTGTCATG 59.668 37.037 22.37 18.61 44.44 3.07
353 354 7.331934 GTCACAATGACTAGTAACATGTGTCAT 59.668 37.037 18.23 18.23 46.32 3.06
354 355 6.645003 GTCACAATGACTAGTAACATGTGTCA 59.355 38.462 20.07 15.76 43.73 3.58
355 356 7.050281 GTCACAATGACTAGTAACATGTGTC 57.950 40.000 20.07 14.38 43.73 3.67
373 374 9.562408 CCTCTAGATGTATAAGACTAGTCACAA 57.438 37.037 24.44 9.69 35.34 3.33
374 375 8.158132 CCCTCTAGATGTATAAGACTAGTCACA 58.842 40.741 24.44 18.83 35.34 3.58
375 376 8.377034 TCCCTCTAGATGTATAAGACTAGTCAC 58.623 40.741 24.44 13.94 35.34 3.67
376 377 8.507582 TCCCTCTAGATGTATAAGACTAGTCA 57.492 38.462 24.44 5.48 35.34 3.41
377 378 7.551617 GCTCCCTCTAGATGTATAAGACTAGTC 59.448 44.444 15.41 15.41 35.34 2.59
378 379 7.399634 GCTCCCTCTAGATGTATAAGACTAGT 58.600 42.308 0.00 0.00 35.34 2.57
379 380 6.537301 CGCTCCCTCTAGATGTATAAGACTAG 59.463 46.154 0.00 0.00 35.19 2.57
380 381 6.212993 TCGCTCCCTCTAGATGTATAAGACTA 59.787 42.308 0.00 0.00 0.00 2.59
381 382 5.013287 TCGCTCCCTCTAGATGTATAAGACT 59.987 44.000 0.00 0.00 0.00 3.24
382 383 5.247084 TCGCTCCCTCTAGATGTATAAGAC 58.753 45.833 0.00 0.00 0.00 3.01
383 384 5.013287 ACTCGCTCCCTCTAGATGTATAAGA 59.987 44.000 0.00 0.00 0.00 2.10
384 385 5.250200 ACTCGCTCCCTCTAGATGTATAAG 58.750 45.833 0.00 0.00 0.00 1.73
385 386 5.244189 ACTCGCTCCCTCTAGATGTATAA 57.756 43.478 0.00 0.00 0.00 0.98
386 387 4.912317 ACTCGCTCCCTCTAGATGTATA 57.088 45.455 0.00 0.00 0.00 1.47
387 388 3.799432 ACTCGCTCCCTCTAGATGTAT 57.201 47.619 0.00 0.00 0.00 2.29
388 389 3.647113 ACTACTCGCTCCCTCTAGATGTA 59.353 47.826 0.00 0.00 0.00 2.29
389 390 2.440253 ACTACTCGCTCCCTCTAGATGT 59.560 50.000 0.00 0.00 0.00 3.06
390 391 3.134574 ACTACTCGCTCCCTCTAGATG 57.865 52.381 0.00 0.00 0.00 2.90
391 392 6.214005 ACTTATACTACTCGCTCCCTCTAGAT 59.786 42.308 0.00 0.00 0.00 1.98
392 393 5.543405 ACTTATACTACTCGCTCCCTCTAGA 59.457 44.000 0.00 0.00 0.00 2.43
393 394 5.797051 ACTTATACTACTCGCTCCCTCTAG 58.203 45.833 0.00 0.00 0.00 2.43
394 395 5.822132 ACTTATACTACTCGCTCCCTCTA 57.178 43.478 0.00 0.00 0.00 2.43
395 396 4.710313 ACTTATACTACTCGCTCCCTCT 57.290 45.455 0.00 0.00 0.00 3.69
396 397 5.997129 AGTAACTTATACTACTCGCTCCCTC 59.003 44.000 0.00 0.00 0.00 4.30
397 398 5.939447 AGTAACTTATACTACTCGCTCCCT 58.061 41.667 0.00 0.00 0.00 4.20
398 399 5.181056 GGAGTAACTTATACTACTCGCTCCC 59.819 48.000 0.00 0.00 43.30 4.30
399 400 5.181056 GGGAGTAACTTATACTACTCGCTCC 59.819 48.000 17.32 0.00 46.59 4.70
400 401 6.239908 GGGAGTAACTTATACTACTCGCTC 57.760 45.833 17.32 0.00 46.59 5.03
403 404 6.949352 TTGGGGAGTAACTTATACTACTCG 57.051 41.667 8.62 0.00 43.30 4.18
412 413 9.275572 ACTACTTTCATATTGGGGAGTAACTTA 57.724 33.333 0.00 0.00 0.00 2.24
413 414 8.159229 ACTACTTTCATATTGGGGAGTAACTT 57.841 34.615 0.00 0.00 0.00 2.66
414 415 7.750947 ACTACTTTCATATTGGGGAGTAACT 57.249 36.000 0.00 0.00 0.00 2.24
415 416 7.656542 GCTACTACTTTCATATTGGGGAGTAAC 59.343 40.741 0.00 0.00 0.00 2.50
416 417 7.346175 TGCTACTACTTTCATATTGGGGAGTAA 59.654 37.037 0.00 0.00 0.00 2.24
417 418 6.842280 TGCTACTACTTTCATATTGGGGAGTA 59.158 38.462 0.00 0.00 0.00 2.59
418 419 5.665812 TGCTACTACTTTCATATTGGGGAGT 59.334 40.000 0.00 0.00 0.00 3.85
419 420 6.174720 TGCTACTACTTTCATATTGGGGAG 57.825 41.667 0.00 0.00 0.00 4.30
420 421 6.763715 ATGCTACTACTTTCATATTGGGGA 57.236 37.500 0.00 0.00 0.00 4.81
421 422 7.823745 AAATGCTACTACTTTCATATTGGGG 57.176 36.000 0.00 0.00 0.00 4.96
449 450 9.334693 GAATGAAAGATATTTTCTCACACACAC 57.665 33.333 9.98 0.00 31.78 3.82
468 469 4.514816 TGCAGTGACGAGAAATGAATGAAA 59.485 37.500 0.00 0.00 0.00 2.69
482 489 2.203139 TGGGGTTGTGCAGTGACG 60.203 61.111 0.00 0.00 0.00 4.35
559 566 6.954487 TCTACGGCTAGATGTGATTCTTTA 57.046 37.500 0.00 0.00 0.00 1.85
577 584 6.015504 CCTCGTGAATTCAATTTGTTCTACG 58.984 40.000 10.35 5.61 32.74 3.51
800 814 4.515404 TCGAGATCGACGAGCTGA 57.485 55.556 21.95 14.75 44.22 4.26
954 968 1.068281 GAGATCAGGATGCTGCTCGAA 59.932 52.381 9.76 0.00 34.76 3.71
1271 1285 1.343069 GGAGCGGATGGAGGTAGAAT 58.657 55.000 0.00 0.00 0.00 2.40
1278 1292 1.890979 GCATGTGGAGCGGATGGAG 60.891 63.158 0.00 0.00 0.00 3.86
1286 1300 6.750148 ACTAGTACTAATTAGCATGTGGAGC 58.250 40.000 12.54 0.00 0.00 4.70
1293 1307 9.132923 TGCACTTCTACTAGTACTAATTAGCAT 57.867 33.333 12.54 1.54 0.00 3.79
1304 1318 3.737047 GCGCCATTGCACTTCTACTAGTA 60.737 47.826 1.89 1.89 37.32 1.82
1305 1319 2.893637 CGCCATTGCACTTCTACTAGT 58.106 47.619 0.00 0.00 37.32 2.57
1306 1320 1.594862 GCGCCATTGCACTTCTACTAG 59.405 52.381 0.00 0.00 37.32 2.57
1386 1400 1.369625 CAACGCCAAGGACCTCATAC 58.630 55.000 0.00 0.00 0.00 2.39
1387 1401 0.392461 GCAACGCCAAGGACCTCATA 60.392 55.000 0.00 0.00 0.00 2.15
1603 1617 2.122769 TTCACGGAGGTGGTGGGA 60.123 61.111 0.00 0.00 44.50 4.37
1772 1786 3.417690 AGGCGACGAACTAACTATGTC 57.582 47.619 0.00 0.00 0.00 3.06
1775 1789 2.421424 ACGAAGGCGACGAACTAACTAT 59.579 45.455 12.47 0.00 41.64 2.12
1777 1791 0.595095 ACGAAGGCGACGAACTAACT 59.405 50.000 12.47 0.00 41.64 2.24
1838 1852 4.672413 GCAAGATTCGTTCAAGAACACTTG 59.328 41.667 20.87 20.87 42.97 3.16
1840 1854 3.876914 TGCAAGATTCGTTCAAGAACACT 59.123 39.130 12.86 4.13 41.20 3.55
1868 1882 0.535335 ACGTCATCCAGGTACGCAAT 59.465 50.000 10.44 0.00 40.18 3.56
2066 2086 2.190313 GAGGTGGCCATCATGCGA 59.810 61.111 20.62 0.00 0.00 5.10
2273 2296 4.803908 GGAAAGGAGCTGGGCCGG 62.804 72.222 8.39 8.39 0.00 6.13
2279 2302 2.037136 CGTGCTGGGAAAGGAGCTG 61.037 63.158 0.00 0.00 36.11 4.24
2320 2343 3.263503 CTCGTGGCCAAGACGACGA 62.264 63.158 18.10 15.03 46.36 4.20
2325 2348 2.435059 GGAGCTCGTGGCCAAGAC 60.435 66.667 18.10 14.08 43.05 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.