Multiple sequence alignment - TraesCS7B01G130100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G130100 chr7B 100.000 2321 0 0 1 2321 156633695 156631375 0.000000e+00 4287.0
1 TraesCS7B01G130100 chr7D 89.940 2316 122 65 37 2321 193205389 193203154 0.000000e+00 2883.0
2 TraesCS7B01G130100 chr7D 95.349 43 1 1 1 42 298297672 298297630 1.490000e-07 67.6
3 TraesCS7B01G130100 chr7A 87.118 1048 65 41 531 1555 202725934 202724934 0.000000e+00 1123.0
4 TraesCS7B01G130100 chr7A 91.781 730 30 18 1596 2321 202724937 202724234 0.000000e+00 989.0
5 TraesCS7B01G130100 chr7A 88.372 516 37 10 37 538 202726558 202726052 1.190000e-167 599.0
6 TraesCS7B01G130100 chr7A 88.571 210 15 7 36 237 202733617 202733409 1.780000e-61 246.0
7 TraesCS7B01G130100 chr7A 100.000 30 0 0 1369 1398 183649610 183649639 3.220000e-04 56.5
8 TraesCS7B01G130100 chr5D 100.000 38 0 0 1 38 216151633 216151596 1.150000e-08 71.3
9 TraesCS7B01G130100 chr5D 100.000 37 0 0 1 37 525083019 525083055 4.140000e-08 69.4
10 TraesCS7B01G130100 chr4B 97.368 38 1 0 1 38 591534195 591534232 5.350000e-07 65.8
11 TraesCS7B01G130100 chr6B 97.297 37 1 0 1 37 630603086 630603122 1.930000e-06 63.9
12 TraesCS7B01G130100 chr4A 97.297 37 1 0 1 37 688910498 688910462 1.930000e-06 63.9
13 TraesCS7B01G130100 chr6A 97.222 36 1 0 9 44 615071073 615071038 6.920000e-06 62.1
14 TraesCS7B01G130100 chr4D 94.872 39 2 0 6 44 403012046 403012084 6.920000e-06 62.1
15 TraesCS7B01G130100 chr5A 88.000 50 6 0 1 50 290396752 290396801 2.490000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G130100 chr7B 156631375 156633695 2320 True 4287.000000 4287 100.000000 1 2321 1 chr7B.!!$R1 2320
1 TraesCS7B01G130100 chr7D 193203154 193205389 2235 True 2883.000000 2883 89.940000 37 2321 1 chr7D.!!$R1 2284
2 TraesCS7B01G130100 chr7A 202724234 202726558 2324 True 903.666667 1123 89.090333 37 2321 3 chr7A.!!$R2 2284

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 1003 0.178998 TATCCTCTCCCCCTCGAACG 60.179 60.0 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1898 2085 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.959705 AAAAGACTTATATTTAGAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
33 34 7.909485 AAGACTTATATTTAGAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
34 35 7.527568 AGACTTATATTTAGAACGGAGGGAG 57.472 40.000 0.00 0.00 0.00 4.30
35 36 7.068061 AGACTTATATTTAGAACGGAGGGAGT 58.932 38.462 0.00 0.00 0.00 3.85
99 103 4.393062 CAGCACCGTAAGTTGAGAAATGAT 59.607 41.667 0.00 0.00 0.00 2.45
103 107 6.128391 GCACCGTAAGTTGAGAAATGATGTAA 60.128 38.462 0.00 0.00 0.00 2.41
104 108 7.456253 CACCGTAAGTTGAGAAATGATGTAAG 58.544 38.462 0.00 0.00 0.00 2.34
106 110 7.876068 ACCGTAAGTTGAGAAATGATGTAAGAA 59.124 33.333 0.00 0.00 0.00 2.52
107 111 8.383619 CCGTAAGTTGAGAAATGATGTAAGAAG 58.616 37.037 0.00 0.00 0.00 2.85
108 112 7.900352 CGTAAGTTGAGAAATGATGTAAGAAGC 59.100 37.037 0.00 0.00 0.00 3.86
111 115 6.373774 AGTTGAGAAATGATGTAAGAAGCTGG 59.626 38.462 0.00 0.00 0.00 4.85
162 166 4.320861 CCCGTTAAGCAAACAACATGATGA 60.321 41.667 10.29 0.00 38.03 2.92
184 188 4.888917 ACCTCTCTGAGTCAGCTTTTTAC 58.111 43.478 15.72 0.00 0.00 2.01
186 190 3.318017 TCTCTGAGTCAGCTTTTTACGC 58.682 45.455 15.72 0.00 0.00 4.42
223 235 1.541147 CCATGGCGAGAAAGCTTCAAA 59.459 47.619 0.00 0.00 37.29 2.69
234 246 4.687483 AGAAAGCTTCAAAAATGCCAATCG 59.313 37.500 0.00 0.00 0.00 3.34
379 391 6.764560 TGTCACTCATCAATAATCCACATCTG 59.235 38.462 0.00 0.00 0.00 2.90
431 446 9.506042 AAACCAAGGGGAAGAATAATTCATATT 57.494 29.630 0.00 0.00 35.98 1.28
637 793 2.031420 CGGCATGCTCCACAATCATTAG 60.031 50.000 18.92 0.00 0.00 1.73
674 830 3.072184 AGCATCACAAGAGAACAGTTCCT 59.928 43.478 9.85 4.25 0.00 3.36
685 841 7.790782 AGAGAACAGTTCCTATCTCTTTTCT 57.209 36.000 9.85 0.00 44.67 2.52
686 842 7.610865 AGAGAACAGTTCCTATCTCTTTTCTG 58.389 38.462 9.85 0.00 44.67 3.02
687 843 6.169800 AGAACAGTTCCTATCTCTTTTCTGC 58.830 40.000 9.85 0.00 30.41 4.26
688 844 4.499183 ACAGTTCCTATCTCTTTTCTGCG 58.501 43.478 0.00 0.00 0.00 5.18
689 845 3.868077 CAGTTCCTATCTCTTTTCTGCGG 59.132 47.826 0.00 0.00 0.00 5.69
736 897 4.042684 ACTCTTTGCTTTCTCCTCCATTCT 59.957 41.667 0.00 0.00 0.00 2.40
794 957 1.379176 GCCCTCAGCCCTTTCCTTC 60.379 63.158 0.00 0.00 34.35 3.46
831 994 7.612244 GCCTTTATTATTTTCCTATCCTCTCCC 59.388 40.741 0.00 0.00 0.00 4.30
833 996 7.584396 TTATTATTTTCCTATCCTCTCCCCC 57.416 40.000 0.00 0.00 0.00 5.40
836 999 0.483328 TTCCTATCCTCTCCCCCTCG 59.517 60.000 0.00 0.00 0.00 4.63
837 1000 0.403008 TCCTATCCTCTCCCCCTCGA 60.403 60.000 0.00 0.00 0.00 4.04
838 1001 0.483328 CCTATCCTCTCCCCCTCGAA 59.517 60.000 0.00 0.00 0.00 3.71
840 1003 0.178998 TATCCTCTCCCCCTCGAACG 60.179 60.000 0.00 0.00 0.00 3.95
841 1004 2.226149 ATCCTCTCCCCCTCGAACGT 62.226 60.000 0.00 0.00 0.00 3.99
842 1005 2.416432 CCTCTCCCCCTCGAACGTC 61.416 68.421 0.00 0.00 0.00 4.34
843 1006 2.362120 TCTCCCCCTCGAACGTCC 60.362 66.667 0.00 0.00 0.00 4.79
857 1020 1.360551 CGTCCGGCACTATCCTCTG 59.639 63.158 0.00 0.00 0.00 3.35
862 1025 3.190953 GTCCGGCACTATCCTCTGTATAC 59.809 52.174 0.00 0.00 0.00 1.47
865 1028 4.321304 CCGGCACTATCCTCTGTATACAAG 60.321 50.000 7.06 7.41 0.00 3.16
951 1118 1.388547 GTCCAAGTCCAACAAGTGCA 58.611 50.000 0.00 0.00 0.00 4.57
952 1119 1.334869 GTCCAAGTCCAACAAGTGCAG 59.665 52.381 0.00 0.00 0.00 4.41
953 1120 1.211703 TCCAAGTCCAACAAGTGCAGA 59.788 47.619 0.00 0.00 0.00 4.26
954 1121 2.023673 CCAAGTCCAACAAGTGCAGAA 58.976 47.619 0.00 0.00 0.00 3.02
955 1122 2.033801 CCAAGTCCAACAAGTGCAGAAG 59.966 50.000 0.00 0.00 0.00 2.85
956 1123 2.684881 CAAGTCCAACAAGTGCAGAAGT 59.315 45.455 0.00 0.00 0.00 3.01
957 1124 2.292267 AGTCCAACAAGTGCAGAAGTG 58.708 47.619 0.00 0.00 0.00 3.16
975 1148 4.007644 CTCGCCACTGCTCCACCA 62.008 66.667 0.00 0.00 34.43 4.17
976 1149 4.314440 TCGCCACTGCTCCACCAC 62.314 66.667 0.00 0.00 34.43 4.16
978 1151 4.269523 GCCACTGCTCCACCACCA 62.270 66.667 0.00 0.00 33.53 4.17
991 1164 1.262640 ACCACCACCACCGTATCTCC 61.263 60.000 0.00 0.00 0.00 3.71
996 1169 0.815734 CACCACCGTATCTCCGTTCT 59.184 55.000 0.00 0.00 0.00 3.01
1063 1236 1.520787 GAATACCAGGTGTCCGGCG 60.521 63.158 0.76 0.00 0.00 6.46
1207 1380 1.167781 TGACGAGTGGTACGACTGCA 61.168 55.000 15.86 7.83 34.70 4.41
1209 1382 1.443872 CGAGTGGTACGACTGCACC 60.444 63.158 15.86 0.00 35.24 5.01
1339 1512 1.330655 AATGATCGGTCCGCCTCAGT 61.331 55.000 17.66 13.93 0.00 3.41
1362 1536 0.673022 CCGCTCTTCTCTTTGCTGCT 60.673 55.000 0.00 0.00 0.00 4.24
1570 1751 0.541863 AGGTGCCTGAAATCCTACCG 59.458 55.000 0.00 0.00 33.55 4.02
1571 1752 1.095807 GGTGCCTGAAATCCTACCGC 61.096 60.000 0.00 0.00 0.00 5.68
1572 1753 0.107654 GTGCCTGAAATCCTACCGCT 60.108 55.000 0.00 0.00 0.00 5.52
1573 1754 0.618458 TGCCTGAAATCCTACCGCTT 59.382 50.000 0.00 0.00 0.00 4.68
1574 1755 1.834896 TGCCTGAAATCCTACCGCTTA 59.165 47.619 0.00 0.00 0.00 3.09
1610 1791 8.397906 TGTCACACTTAATGTTCTCTTTTCTTG 58.602 33.333 0.00 0.00 40.64 3.02
1650 1832 6.798427 ATAGTGTCATGGTAGATCAGTTGT 57.202 37.500 0.00 0.00 0.00 3.32
1651 1833 7.898014 ATAGTGTCATGGTAGATCAGTTGTA 57.102 36.000 0.00 0.00 0.00 2.41
1652 1834 6.605471 AGTGTCATGGTAGATCAGTTGTAA 57.395 37.500 0.00 0.00 0.00 2.41
1691 1875 6.650807 TGTCTTCAAACACTTCCATATCAGAC 59.349 38.462 0.00 0.00 0.00 3.51
1756 1940 9.628500 ATGCAGTGCAATCATCTCATTATATAT 57.372 29.630 23.90 0.00 43.62 0.86
1833 2020 2.472816 ACGCAAAAGCCATGAAACAAG 58.527 42.857 0.00 0.00 0.00 3.16
1907 2094 4.668151 GGGGGAAACACACACACA 57.332 55.556 0.00 0.00 32.66 3.72
1908 2095 2.112029 GGGGGAAACACACACACAC 58.888 57.895 0.00 0.00 32.66 3.82
1909 2096 0.681564 GGGGGAAACACACACACACA 60.682 55.000 0.00 0.00 32.66 3.72
1910 2097 0.454196 GGGGAAACACACACACACAC 59.546 55.000 0.00 0.00 0.00 3.82
1911 2098 1.169577 GGGAAACACACACACACACA 58.830 50.000 0.00 0.00 0.00 3.72
1912 2099 1.135517 GGGAAACACACACACACACAC 60.136 52.381 0.00 0.00 0.00 3.82
1913 2100 1.537638 GGAAACACACACACACACACA 59.462 47.619 0.00 0.00 0.00 3.72
1914 2101 2.580589 GAAACACACACACACACACAC 58.419 47.619 0.00 0.00 0.00 3.82
1915 2102 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
1916 2103 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1983 2172 2.224402 ACAGCAGGTCTTCTCTTGTTCC 60.224 50.000 0.00 0.00 0.00 3.62
2012 2201 4.058817 GGCCTATCTACGAAATTCTGTGG 58.941 47.826 0.00 0.00 0.00 4.17
2184 2373 5.485353 AGAATGTCATCCTTCAACCTCTACA 59.515 40.000 0.00 0.00 0.00 2.74
2187 2376 4.777366 TGTCATCCTTCAACCTCTACATCA 59.223 41.667 0.00 0.00 0.00 3.07
2256 2445 1.691219 AACCATCCTTGGGTGCGAT 59.309 52.632 0.00 0.00 43.13 4.58
2295 2484 2.276309 ATAGCTGCCTTGCCACCTCC 62.276 60.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.392259 CCCTCCGTTCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
7 8 8.765517 TCCCTCCGTTCTAAATATAAGTCTTTT 58.234 33.333 0.00 0.00 0.00 2.27
8 9 8.315220 TCCCTCCGTTCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
9 10 7.564292 ACTCCCTCCGTTCTAAATATAAGTCTT 59.436 37.037 0.00 0.00 0.00 3.01
10 11 7.068061 ACTCCCTCCGTTCTAAATATAAGTCT 58.932 38.462 0.00 0.00 0.00 3.24
11 12 7.287512 ACTCCCTCCGTTCTAAATATAAGTC 57.712 40.000 0.00 0.00 0.00 3.01
12 13 7.781693 TGTACTCCCTCCGTTCTAAATATAAGT 59.218 37.037 0.00 0.00 0.00 2.24
13 14 8.174733 TGTACTCCCTCCGTTCTAAATATAAG 57.825 38.462 0.00 0.00 0.00 1.73
14 15 8.582437 CATGTACTCCCTCCGTTCTAAATATAA 58.418 37.037 0.00 0.00 0.00 0.98
15 16 7.727186 ACATGTACTCCCTCCGTTCTAAATATA 59.273 37.037 0.00 0.00 0.00 0.86
16 17 6.553852 ACATGTACTCCCTCCGTTCTAAATAT 59.446 38.462 0.00 0.00 0.00 1.28
17 18 5.895534 ACATGTACTCCCTCCGTTCTAAATA 59.104 40.000 0.00 0.00 0.00 1.40
18 19 4.715297 ACATGTACTCCCTCCGTTCTAAAT 59.285 41.667 0.00 0.00 0.00 1.40
19 20 4.091549 ACATGTACTCCCTCCGTTCTAAA 58.908 43.478 0.00 0.00 0.00 1.85
20 21 3.705051 ACATGTACTCCCTCCGTTCTAA 58.295 45.455 0.00 0.00 0.00 2.10
21 22 3.377253 ACATGTACTCCCTCCGTTCTA 57.623 47.619 0.00 0.00 0.00 2.10
22 23 2.233305 ACATGTACTCCCTCCGTTCT 57.767 50.000 0.00 0.00 0.00 3.01
23 24 3.446516 ACTAACATGTACTCCCTCCGTTC 59.553 47.826 0.00 0.00 0.00 3.95
24 25 3.194968 CACTAACATGTACTCCCTCCGTT 59.805 47.826 0.00 0.00 0.00 4.44
25 26 2.758979 CACTAACATGTACTCCCTCCGT 59.241 50.000 0.00 0.00 0.00 4.69
26 27 2.481449 GCACTAACATGTACTCCCTCCG 60.481 54.545 0.00 0.00 0.00 4.63
27 28 2.500098 TGCACTAACATGTACTCCCTCC 59.500 50.000 0.00 0.00 0.00 4.30
28 29 3.887621 TGCACTAACATGTACTCCCTC 57.112 47.619 0.00 0.00 0.00 4.30
29 30 3.774766 TCATGCACTAACATGTACTCCCT 59.225 43.478 0.00 0.00 46.15 4.20
30 31 4.122776 CTCATGCACTAACATGTACTCCC 58.877 47.826 0.00 0.00 46.15 4.30
31 32 4.122776 CCTCATGCACTAACATGTACTCC 58.877 47.826 0.00 0.00 46.15 3.85
32 33 5.011090 TCCTCATGCACTAACATGTACTC 57.989 43.478 0.00 0.00 46.15 2.59
33 34 4.467795 ACTCCTCATGCACTAACATGTACT 59.532 41.667 0.00 0.00 46.15 2.73
34 35 4.759782 ACTCCTCATGCACTAACATGTAC 58.240 43.478 0.00 0.00 46.15 2.90
35 36 5.656859 AGTACTCCTCATGCACTAACATGTA 59.343 40.000 0.00 0.00 46.15 2.29
82 86 7.900352 GCTTCTTACATCATTTCTCAACTTACG 59.100 37.037 0.00 0.00 0.00 3.18
108 112 1.246737 GCCTTTGTTCAGCTCCCCAG 61.247 60.000 0.00 0.00 0.00 4.45
111 115 1.301677 CTCGCCTTTGTTCAGCTCCC 61.302 60.000 0.00 0.00 0.00 4.30
162 166 4.559704 CGTAAAAAGCTGACTCAGAGAGGT 60.560 45.833 10.45 0.00 33.35 3.85
223 235 1.216178 GCCTGCACGATTGGCATTT 59.784 52.632 8.94 0.00 45.46 2.32
234 246 4.082523 TAGGGACGCTGCCTGCAC 62.083 66.667 1.57 0.00 39.17 4.57
255 267 3.000925 GGTACGTATTTGTCTGATTGGCG 59.999 47.826 0.00 0.00 0.00 5.69
294 306 3.673746 TGTTTGTGTCTTTCTTGCTCG 57.326 42.857 0.00 0.00 0.00 5.03
379 391 8.668510 TTTGAAGCTAATGGAGTATCATCTTC 57.331 34.615 0.00 0.00 36.25 2.87
483 502 3.472652 TGTAAACGTTGCCACTCTTGAT 58.527 40.909 0.00 0.00 0.00 2.57
566 722 4.895297 GGCCATGGATTTGAAGGATAAAGA 59.105 41.667 18.40 0.00 0.00 2.52
637 793 5.780984 TGTGATGCTGATCTGATCATCTAC 58.219 41.667 19.84 15.36 38.85 2.59
674 830 7.145985 GTGTATGTATCCGCAGAAAAGAGATA 58.854 38.462 0.00 0.00 0.00 1.98
684 840 3.667497 AGATGGTGTATGTATCCGCAG 57.333 47.619 0.00 0.00 0.00 5.18
685 841 4.149598 ACTAGATGGTGTATGTATCCGCA 58.850 43.478 0.00 0.00 0.00 5.69
686 842 4.785511 ACTAGATGGTGTATGTATCCGC 57.214 45.455 0.00 0.00 0.00 5.54
687 843 7.210718 TGTTACTAGATGGTGTATGTATCCG 57.789 40.000 0.00 0.00 0.00 4.18
736 897 0.671251 GTGGACGCCAACATGGAAAA 59.329 50.000 0.00 0.00 40.96 2.29
794 957 7.981789 GGAAAATAATAAAGGCCAGGAGAAAAG 59.018 37.037 5.01 0.00 0.00 2.27
833 996 0.591741 GATAGTGCCGGACGTTCGAG 60.592 60.000 20.12 9.19 0.00 4.04
836 999 0.248949 GAGGATAGTGCCGGACGTTC 60.249 60.000 5.05 3.44 0.00 3.95
837 1000 0.683504 AGAGGATAGTGCCGGACGTT 60.684 55.000 5.05 0.00 0.00 3.99
838 1001 1.076923 AGAGGATAGTGCCGGACGT 60.077 57.895 5.05 0.00 0.00 4.34
840 1003 1.688772 TACAGAGGATAGTGCCGGAC 58.311 55.000 5.05 0.00 0.00 4.79
841 1004 2.677542 ATACAGAGGATAGTGCCGGA 57.322 50.000 5.05 0.00 0.00 5.14
842 1005 3.154710 TGTATACAGAGGATAGTGCCGG 58.845 50.000 0.08 0.00 0.00 6.13
843 1006 4.278669 ACTTGTATACAGAGGATAGTGCCG 59.721 45.833 5.56 0.00 0.00 5.69
857 1020 6.790825 GTCACTTGCTTTCGAAACTTGTATAC 59.209 38.462 6.47 0.00 0.00 1.47
862 1025 3.029074 CGTCACTTGCTTTCGAAACTTG 58.971 45.455 6.47 0.00 0.00 3.16
865 1028 1.003866 AGCGTCACTTGCTTTCGAAAC 60.004 47.619 6.47 5.10 40.48 2.78
951 1118 2.358003 GCAGTGGCGAGCACTTCT 60.358 61.111 0.00 0.00 0.00 2.85
975 1148 0.901580 AACGGAGATACGGTGGTGGT 60.902 55.000 0.00 0.00 38.39 4.16
976 1149 0.179119 GAACGGAGATACGGTGGTGG 60.179 60.000 0.00 0.00 38.39 4.61
977 1150 0.815734 AGAACGGAGATACGGTGGTG 59.184 55.000 0.00 0.00 38.39 4.17
978 1151 0.815734 CAGAACGGAGATACGGTGGT 59.184 55.000 0.00 0.00 38.39 4.16
991 1164 2.480555 GGTCGCCATTGCAGAACG 59.519 61.111 0.00 0.00 37.32 3.95
1019 1192 4.619140 GTATCGCCGTCGTCCCCG 62.619 72.222 0.00 0.00 36.96 5.73
1020 1193 4.276146 GGTATCGCCGTCGTCCCC 62.276 72.222 0.00 0.00 36.96 4.81
1047 1220 3.467226 CCGCCGGACACCTGGTAT 61.467 66.667 5.05 0.00 41.06 2.73
1331 1504 4.200283 GAGCGGGAGACTGAGGCG 62.200 72.222 0.00 0.00 39.98 5.52
1339 1512 0.247736 GCAAAGAGAAGAGCGGGAGA 59.752 55.000 0.00 0.00 0.00 3.71
1362 1536 6.382859 TCTCCTATCATACTAACCTGCAAACA 59.617 38.462 0.00 0.00 0.00 2.83
1610 1791 6.420903 TGACACTATATATTCTTTGCTGCGAC 59.579 38.462 0.00 0.00 0.00 5.19
1651 1833 8.859090 TGTTTGAAGACAACCTCATGATATTTT 58.141 29.630 0.00 0.00 35.63 1.82
1652 1834 8.299570 GTGTTTGAAGACAACCTCATGATATTT 58.700 33.333 0.00 0.00 35.63 1.40
1691 1875 2.987413 TCAGTGCTTAAATGCAACCG 57.013 45.000 0.00 0.00 45.12 4.44
1793 1980 3.503891 GTTTTGCCACGTAACTGTTGTT 58.496 40.909 2.69 0.00 39.98 2.83
1894 2081 2.031595 TGTGTGTGTGTGTGTGTGTTTC 60.032 45.455 0.00 0.00 0.00 2.78
1896 2083 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
1897 2084 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1898 2085 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1899 2086 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1900 2087 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1901 2088 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1902 2089 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1903 2090 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1904 2091 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1905 2092 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1906 2093 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1907 2094 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1908 2095 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1909 2096 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1910 2097 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1911 2098 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1912 2099 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1913 2100 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1914 2101 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1915 2102 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1916 2103 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1983 2172 4.386867 TTTCGTAGATAGGCCACAAGAG 57.613 45.455 5.01 0.00 35.04 2.85
2012 2201 4.518970 CCAGTTCAGAGGATAGAGCTAGAC 59.481 50.000 0.00 0.00 0.00 2.59
2184 2373 6.458210 CATGCAAGTTAAAAAGGGAACTGAT 58.542 36.000 0.00 0.00 42.68 2.90
2256 2445 3.307108 TCACGGCACCGGACATCA 61.307 61.111 9.46 0.00 44.69 3.07
2295 2484 4.468689 GGGAAGGCCGAAGACCCG 62.469 72.222 0.00 0.00 33.83 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.