>input_sequence_83917
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----------------------------------------------------ATGGCGACCGCCACGCCGGCGGGGACGA
CGGCGATACCGTTGCCGGAATACCAGGTGTCCGGCGGGGCGGCCGCGGCCCACCAGCGGGGCTCCGTCGGCCCGTTCGTC
GGGGTGCTCGCGGCCGTGCTGCTGCTCACCGCCCTGTCCTGCTTCTTCGGCCGGGTGTGCGCGGCGCACGCGCAGGGGCC
TGACGAGTGGTACGACTGCACCAGGCTCGCCGGCCGCCGGCGATGCTGGTGGTGGCGGGCGCCTCGGCGGCCGGTCAGGC
CGGCCGAGGAGGAGGCCAAGCCGCCGCCGGCGATGCCGTTGCCTGAGCCGTGA---------------------------
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>chr7B_1_TraesCS7B01G130100
ATCTCTAAAAAGACTTATATTTAGAACGGAGGGAGTACATGTTAGTGCATGAGGAGTACTTTTT---AAAGCTGACGTAC
AGCACCGTAAGTTGAGAAATGATGTAAGAAGCTGGGGAGCTGAACAAAGGCGAGTAACCTTGCCCGTTAAGCAAACAACA
TGATGACCTCTCTGAGTCAGCTTTTTACGCCTTAGGATACCCCA--------TCCCATGGCGAGAAAGCTTCAAAAATGC
CAATCGTGCAGGCAGCGTCCCTACCCCGCCAATCAGACAAATACGTACCATGCCGTCTTCCAGGCCGAGCAAGAAAGACA
CAAACATTGTGGACAAGCCAACAAAGAAACGGGATGTAGTACATCTGTCACTCATCAATAATCCACATCTGAAGATGATA
CTCCATTAGCTTC-AAAAAACCAAGGGGAAGAATAATT--CATATTTGAATGAGATACCAT----TAGCTTAAATTCTGT
CAAAAGCAGTGCTTTGGAAGGA-TCAAGAGTGGCAACGTTTACAAGCAAAGCAACTTCAACTGTTAACAAGTACTCC---
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-------------------------------------------TTTTTCCTTTATTTTTTCCTCTCAT----------GT
TTCTTTATCCTTCAAATCCATGGCCATACATCCAAAGAGGGAGGTTCTTCCCGGCATGCTCCACAATCATTAGTAGATGA
TCAGATCAGCATCACAAGAGAACAGTTCCTATCTCTTTTCTGCGG-----ATACATACACCATCTAGTAACATACTCTTT
GCTTTCTCCTCCATTCTTTTCCATGTTGGCGTCCACTTAAATCTTCCACAAAGCCAGCCCTCAGCCCTTTCCT--TCTTT
TCTCCTGGCCTTTATTATTTTCCTATCCTCTCCCCCTCGAACGTCCGGCACTATCCTCTGTATACAAGTTTCGAAAGCAA
GTGACGCTTTCGCCCATTCCATTCCTTGCACTCCACCC----ATGCTCCCCTCGCCCCGTCCAAGTCCAACAAGTGCAGA
AGTGCTCGCCACTGCTC------CACCACCACCACCGTATCTCCGTTCTGCAATGGCGACCGCCACGCCGGCGGGGACGA
CGGCGATACCGTTGCCGGAATACCAGGTGTCCGGCGGGGCGGCCGCGGCCCACCAGCGGGGCTCCGTCGGCCCGTTCGTC
GGGGTGCTCGCGGCCGTGCTGCTGCTCACCGCCCTGTCCTGCTTCTTCGGCCGGGTGTGCGCGGCGCACGCGCAGGGGCC
TGACGAGTGGTACGACTGCACCAGGCTCGCCGGCCGCCGGCGATGCTGGTGGTGGCGGGCGCCTCGGCGGCCGGTCAGGC
CGGCCGAGGAGGAGGCCAAGCCGCCGCCGGCGATGCCGTTGCCTGAGCCGTGAATGATCGGTCCGCCTCAGTCTCCC-GC
TCTTCTCTTTGCTGCTGTTTGCAGGTTAGTATGATAGGAGAGACCAATAAAGAAAAA-G------ATACTATACACGATT
GTAACATCATAATAATTAATTTCTTCTACTAATTAGCAGAATCTCCTTTTCTCTTTATTAGTGAAGAGATTTTGTGGATG
TATTCCTTTCATCCGAATTAACATGGAAATTTCCTGCCATCAAAGCAAATGAGGTGCCTGAAATCCTACCGCTTATTAAT
TTATTGTCACACTTAATGTTCTCTTTTCTTGTCGCAGCA-AAGAATATATAGTGTCATGGTAGATCAGTTGTAAAATAT-
-CATGAGGTTGTCTTCAAACACTTCCATATCAGACGGTTGCATTTAAGCACTGAAAGAATCTGTTTCTGCGAAATGCAGT
GCAATCATCTCATTATATAT---AAACCATAGCATTATTAGTTTACAGTAAAACAGAGGAACAACAGTTACGTGGCAAAA
CGCAAAAGCCATGAAACAAGGTGAAATTCTGCCATCAGAGCACAAGCATAAACAGGGGTAAGAGCAAAAGAGAAGGGGGG
GAAACACACACACACACACACACACACACACACACACACACACACAGCCTTAAA--GCTAAATGAACTTTACAGCAGGTC
TTCTCTTGTTCCTCTTGTGGCCTATCTACGAAATTCTGTGGTCTAGCTCTATCCTCTGAACTGGAAGAACTGCATGGAAC
CATAGAAGCAACAATCCAAGAATATTCACAAGTTCTAGCCAGTCCATCTTCTGTCATCTTTCAGGAGATGACATTCTATA
ATCTGTACAAAACACAAAATCTACTGAGAGAATGTCATCCTTCAACCTCTACATCAGTTCCCTTTTTAACTTGCATGGCC
TTGCCGTCGCGACGAGCAGATATCCCAACCATCCTTGGGTGCGATGATGTCCGGTGCCGTGACGATAGCTGCCTTGCCAC
CTCCGGGTCTTCGGCCTTCCCCAAGTACC
>chr7D_37
------------------------------------ACATGTTAGTGCATAAGGAGTAGTACTTTGCAAAGCTGACGTAG
AGCACTGTAAGTTGAGAAATGAGGTAGAACTTT-AGGAGCTGAACAAAGGTGAGTAACCTTGCCCGTTAAGCA-------
--------TCTCTGAGTCAACTTTTTATGTCTTAGGATACCCCAGACCCCCATCCCATGGCGAGAAAGCTTCAAGAATGC
CAATCATGCAGGTAGCGTCCCTACCCTGCCAATCAGACAAATACTTACCATGCCGTCTTCCAGGCTGAGCAAGAAAGACA
CAAACATTGTGGACAAGCCAACAAAGAAACGGGATGTAGTACATCTGTCACTCATCAATAATCCGCATCTCAAGATGATG
CTCCACTAGCTTCAAAAAAAACAAGGGAAAGATTAATT--CATATCTGAATGAGATACCAT----TAGCTTAAATTCTGT
CAAAAGCAGTGCTTTGGAAGGGGTCAAGAGTGGCAACGTTTACAAGCAAAGCAACTTCAACTGTTAACAAGTACTCC---
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-------------------------------------------TTTCTCCTTTAGTTTTTCCTCTCATCC---TACATGT
TCCTTTATCCTTC-AATCCATGGCCATGCATCCAAAGAGGGAGGTTCTTCCTGGCATGCTCCACAATCATCATTAGATGA
TCAGATCAGCATCACAAGAGAACAGTTCCCATCTCTTTTTCTGCACATACATACATACACCATCTAGTAACATACTCTTT
GCTTTCTCCTCCATTC-TTTCCATGTCGGCGTCCACTTAAATCTTCCACAAAGCCAGCCCTCAGCCCTTTCCT--T-TTT
TCCCCTGGCCTTCATTGTTTTCCTATCCTCTCCTCTTCTCTCCAATGGCACTATCCTCTATATGTAAATTTCGAAAGGAA
GTGACGCTTTCGCCCATTCCATTCCTTGCACTACACCCATGCATGCTCCCCTCACCCCGTCCAAGTCCAACAAGTGC---
-----TCGCCACTGCCC------CATCG---CCACCGTATCTCTGTTCAGCAATGGCGACCGCCACGCCGG---------
---CGATCCCGTTGCCGGACTACCAGGTGTCCGGCAGGGCGGCCGCCGCCCACCCGCGGGGGTCCGTCGGCCCGTTCGTC
GGGGTGCTCGCGGCCGTGCTGCTGCTCACCGCCCTGTCCTGCTTCTTTGGCCGGGTGTGCGCGGCGCACGCGCAGGGGCC
TGACGAGTGGTACGACTGCGCGAGGCTGGCCGGCCGCCGGAGATGCTGGTGGTGGCGGGCGCCTCGGCGGCCGGTCAGGC
CGGCCGAGGAGGAGGCCAAGCCGCCGCCGGCGATGCCGTTGCCTGAGCCGTGAATGATCGGTCGGCCTCAGGCTCCC-GC
TCTTCTCTTTGCTGCAGTTTGCAGGTTAGTATGATAGGAGAGACCAATAAAGAAAAAAGATACTCATACTATACACGATT
GTAACATCATAATAATTC-----------------GCAGAATCTCTTTTTCTCTTAATTAGTGA-GAGATTTTGTAGATG
TATTCCTTTCATCCTAATTAACATGAAAGATTCCTGCCATCAAAACAAATGAGGTGCCTGAAATCCTACCTTC--TTAAT
TTATTGTCACACTTAATGTTCTCTTTTCTTATCGCAGCA-AAGAATATGTAGTGTCATGGTAGATCAGTTG---AATAT-
-CATGAGGTTGTCTTCAAACACTTTCATATCATGAGGTTGCATTTAAGCACTGAAAGAATCTGTTTCTGCGAAATGCAGT
GCAATCATTTCATTATATAG---AAACCATAGCATTATTGGTTTAGAGTAAAACAGAGGGACAACAGTTACGTGGCAAAA
CGCAAAAGCCTTGAAACAAAGTG-AATTCTGCCATCAGAGCACTAGCATAAACAGGGGTAAGAGCAAAAGAGAAGGGGGA
AA---------------------ACACACACACACACACACACACAGCCTTAAATTGCTACATGAACTTTACAGCAGGTC
TTCTCTTGTTCTTCTTGTGGCCTATCTACGAAATTCTGTGATCTAGCTCTATCCTCTGAACTGGAAGAACTGCATGGAAC
CATAGAAGCAACAATCCAAGAATATTCACAAGTTCTAGCCAGTCCATCTTCTGTCATCTTTCAGGAGATGACATTCTATA
ATCTGTACAAAACACAAAATCTACTGAGAGAATGTCATCCTTCAACCTCTACGTCGGTTCCCTTTTTAACTTGCATGGCC
TTGCCGTCGCGACGAGCAGAGATCCCAACCATCCTTTGGTGTGACGATGTCCGGTGCCGTGATGATAGCTGCCTTGCCAC
CTCTGGGTCTTCAGCCTTCCCCAGGTACC
>chr7A_37
------------------------------------ACATGTTAGTGCGTGAGGAGTACTTTTT---AAAGCTGACGTAC
AGCACTGTAAGTTGAGAAATGAGGCAGAACT-TGAGGAGGTGAACAAAGGCGAGTAACCTTGCCCGTTAAGCAAACAACA
TGATGTCCTCTCTGGGTCAGCTTTAAG---CTTAGGATACCCCAAACCCCCATCCCACGGCGAGAGAGCTTCAAGAACGC
CAATCATGCAGGCAGCGTCCCAACCCTGCCAATCAGACAAATACGTACCACGCCGTATTCCAAGCTGAGCAAGAAAG--A
CAAACACTGTGGGCAAGCCAACAAAGAAACGGGAAGC---ACATCTGTCACTCATCAATAATCCACATCTCAAGATGATA
CCCCACCAGCTTC-AAAAAACCAAGGGAAAAAATAATGTCCATATCTGAATGAGATACCATTAGCTAGCTTAAATTCTGT
CAAAAGCAGTGCTTTGGAAGGG-TCGAGACTGGCAACGTTTACAAGCAAAGCAACTCCAACTGTTAACAACTACTCCCTC
TGTCCGGAAATACTTGTCATCAAAATGAATAAAAGAGGATGTATCTGGATGTATTTTAGTTCTAGATACACTCCTTTTTG
TTCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTACTCCTTTTTCCCTTTAGTTTTTCCTCTCATCATCATACATGC
TCCTTTATCCTTCAAATCCATGGCCATACATCCAAAGATGTTC-TTCTTCCCGGCATGCTCCACAATCATTATATACATA
CACCATCT---------------AGTTCCCATCTCTTTTTCTGCACATACATACATACACCATCTAGTAACATACTCTTT
GCTTTCCTCTCCATTC-TTTCCATGTTGGCGTCCACTTAAATCTTCCACAAAGCCATCCCTCGACCCTTTCCTTCT-TTT
TTTCCTGGCCTTTATTATTTTCCCATCCTCTC-----CTCTCCAATGGCACTATCCTCTACAAATAAATTTCGAAAGCAG
GTGACGCTTTCGCCCATGCCATTCCTTGCACTCCACCCAT----GCCCCCCTCGCCCCGTCCAAGCCCAACAAGTGC---
-----TCGCGACTGCTCCACCAACACCG---CCGCCGTACCTCTGTGCAGCAATGGCGACGGCCCCGCCGG---------
---CGATCCCGTTGCCGGACTACCAGGTGTCCGG---GGCGGCCGCGGCCCACCAGCGGGGCTCCGTCGGCCCGTTCGTC
GGGGTGCTCGCGGCGGTGCTGCTGCTCACCGCCATGTCATGCTTCTTCGGCCGGGTGTGCGCGGCGCACGCGCAGGGGCC
TGACGAGTGGTACGACTGCGCGAGGCTCGCCGGCCGCCGGAGATGCTGGTGGTGGCGGGCGCCTCGGCGGCCGGTCAGGC
CGGCCGAGGAGGAGGCCAAGCCGCCGCGGGCGATGCCGTTGCCTGAGCCGTGAACGATCGATCGGCCTCAGGCTTTCTGC
CCTTCTCTTTGCTGCAGTTTGCAGGTTAGTACGATAGGAGAGACCAATAAAGAAAAAAG------ATACTATACACGATT
GTAACATCATAATAATTCATTTCTCCTACTAATTAGAAGAATCTCGTTTTCTTTTTACTAGTGA-GAGATTGTGTAGATG
CATTCCGTTCATCCGAATTAACATGGAAATTTCCTGCCATCAAAGCAA--------------------------------
------------TTGATGTTCTCTTTTCTTATCGCAGCATAAGACTATATAGTGTCATGGTAGGTCAGTTG---AATATA
TCATGAGGTTGTCTTCAAACACTTCCATATCAGATGGTTGCACTTAGGCACTGAAAGAATCTGTTTCTGCGAAATGCAGT
GCAATCATCTCATTTATATAAAAAAAACATAGCAATATCAGTTTACAGTAAAACAGAGGGACAACAGTTACGTGGCAAAA
CGCAAAAGTCATGAAACAAAGTGAAATTCTGCCATCAGAGCACAAGCATAAAC--GGGTAAGAGCAAAAGAGAAGGGGGG
AA---------------------ACACAAGCG----CACACACAGAGCCTAAAATTGCTAAATGAACTTTACAGCAGGTC
TTCTCTTGTTCTTCTTGTGGCCTATCTACGAAATTCTGTGATCTAGCTCTATCCTCTGAACTGGAAGAACTGCATGGAAC
CATAGAAGCAACAATCCAAGAATATTCACAAGTTCTAGCCAGTCCATCTTCTGCCATCTTTCAGGAGATGGCATTCTATA
ATCTGTACAAAACGCAAAATCTACTGAGAGAATGTCATCCTTCAACCTCTATGTCGGTTCCCTTTTTAACTTGCATGGCC
TTGCCGTCGCGACGAGCAGAGATCCCAACCATCCTTGGGTGCGACGATGTCCGGTGCCGTGACGATAGCTGCCTTGCCAC
CTCTGGGTCTTCGGCCTTCCCCAAGTACC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------
-----S----------------S---SS-SSS--S---------------------------------------------
-----S---------------------S-S--------------------------------------------S-----
-----S--------------------S--------------------------------------S--------------
----------------------------------------------------------------------S---------
-----S---------------------S-----------------S----------------------------------
---------------------S----------------------------------------------------------
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------------------------------------------------------S-------------------------
-S----------------------------------------------------------------------S-------
-----------------------------S---------SSSSSS-----------------------------------
----------------S-----------------------------------------------------------S---
---------------------------------S-S--SSS-SSSS-------------S----S--S------------
-----------------------------------------------------------------------------SSS
SSSSS----------------------SSSS------------S----S----------------------SSSSSSSSS
SSS----S-----------S---------------S--------------------------------------------
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-------------------S-S------------------S---------------------------------------
---------------------------------------------------------------S-------S--------
---------------S----------------------------------------------------------------
-----------------S------S--------------------S------------------S----------S----
----------------------------------------------------------------------SSSSS-----
------------------------------S----------------------------------------SSS------
----------------------------------S---------------------------------------------
-------------------S---------------------------------------S--------------------
-------------------S------------------------------------------------------------
S-SSSSSSSSSSSSSSSSSSSSS---------------------------------------------------------
-----------S----------------------------S---------------------------------------
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----------------------------------------------------S--S------------------------
--------------------S-----------------------S-----------------------------------
---S-------------------------
>forward_1003
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-----------------------TATCCTCTCCCCCTCGAACG-------------------------------------
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>reverse_2085
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----CACACACACACACACACACA--------------------------------------------------------
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