Multiple sequence alignment - TraesCS7B01G113800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G113800 chr7B 100.000 2342 0 0 1 2342 131948758 131946417 0.000000e+00 4325
1 TraesCS7B01G113800 chr7B 82.230 287 42 7 1060 1343 131956882 131956602 3.010000e-59 239
2 TraesCS7B01G113800 chr7A 91.156 1436 71 27 950 2342 169026345 169024923 0.000000e+00 1897
3 TraesCS7B01G113800 chr7A 93.236 547 30 6 247 787 169027046 169026501 0.000000e+00 798
4 TraesCS7B01G113800 chr7A 94.156 154 6 3 773 924 169026487 169026335 5.030000e-57 231
5 TraesCS7B01G113800 chr7D 90.695 849 42 12 946 1763 167532041 167531199 0.000000e+00 1096
6 TraesCS7B01G113800 chr7D 92.967 583 38 3 1762 2342 167530971 167530390 0.000000e+00 846
7 TraesCS7B01G113800 chr7D 86.490 681 50 19 247 924 167532668 167532027 0.000000e+00 710
8 TraesCS7B01G113800 chr7D 91.018 334 14 7 1762 2079 167531160 167530827 9.940000e-119 436
9 TraesCS7B01G113800 chr7D 93.600 250 14 2 6 255 220276838 220276591 2.840000e-99 372
10 TraesCS7B01G113800 chr7D 82.578 287 41 7 1060 1343 167551142 167550862 6.460000e-61 244
11 TraesCS7B01G113800 chr7D 84.783 184 12 5 1912 2079 167531199 167531016 1.110000e-38 171
12 TraesCS7B01G113800 chr4B 95.021 241 12 0 5 245 51802147 51802387 1.700000e-101 379
13 TraesCS7B01G113800 chr2A 94.000 250 15 0 3 252 612420439 612420688 1.700000e-101 379
14 TraesCS7B01G113800 chr2A 94.309 246 14 0 6 251 544306318 544306563 6.110000e-101 377
15 TraesCS7B01G113800 chr2D 94.332 247 12 2 6 251 265224412 265224167 6.110000e-101 377
16 TraesCS7B01G113800 chr2D 94.309 246 13 1 6 251 227026647 227026403 2.200000e-100 375
17 TraesCS7B01G113800 chr2D 93.927 247 15 0 1 247 332102726 332102480 7.900000e-100 374
18 TraesCS7B01G113800 chr5D 93.676 253 11 5 4 255 124043208 124042960 7.900000e-100 374
19 TraesCS7B01G113800 chr5D 93.927 247 15 0 1 247 207392081 207392327 7.900000e-100 374
20 TraesCS7B01G113800 chr1A 82.308 130 18 4 422 549 392049402 392049276 8.850000e-20 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G113800 chr7B 131946417 131948758 2341 True 4325.000000 4325 100.000000 1 2342 1 chr7B.!!$R1 2341
1 TraesCS7B01G113800 chr7A 169024923 169027046 2123 True 975.333333 1897 92.849333 247 2342 3 chr7A.!!$R1 2095
2 TraesCS7B01G113800 chr7D 167530390 167532668 2278 True 651.800000 1096 89.190600 247 2342 5 chr7D.!!$R3 2095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.03101 GGAGAGGGGTGTGGGTATCT 60.031 60.0 0.0 0.0 0.0 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1391 1429 0.390866 CATCGGCAGTTGAGCAGAGT 60.391 55.0 0.0 0.0 41.78 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.820059 TCATACTAGCAAGATGCCCG 57.180 50.000 0.00 0.00 46.52 6.13
21 22 2.039418 TCATACTAGCAAGATGCCCGT 58.961 47.619 0.00 0.00 46.52 5.28
22 23 2.138320 CATACTAGCAAGATGCCCGTG 58.862 52.381 0.00 0.00 46.52 4.94
23 24 0.179084 TACTAGCAAGATGCCCGTGC 60.179 55.000 6.11 6.11 46.52 5.34
26 27 3.737172 GCAAGATGCCCGTGCGTT 61.737 61.111 0.00 0.00 40.20 4.84
27 28 2.176546 CAAGATGCCCGTGCGTTG 59.823 61.111 0.00 0.00 41.78 4.10
28 29 3.737172 AAGATGCCCGTGCGTTGC 61.737 61.111 0.00 0.00 41.78 4.17
38 39 2.942879 TGCGTTGCACGGAACATC 59.057 55.556 10.02 0.00 39.47 3.06
39 40 1.889573 TGCGTTGCACGGAACATCA 60.890 52.632 10.02 0.00 39.47 3.07
40 41 1.281353 GCGTTGCACGGAACATCAA 59.719 52.632 10.02 0.00 42.82 2.57
41 42 0.109781 GCGTTGCACGGAACATCAAT 60.110 50.000 10.02 0.00 42.82 2.57
42 43 1.129624 GCGTTGCACGGAACATCAATA 59.870 47.619 10.02 0.00 42.82 1.90
43 44 2.223249 GCGTTGCACGGAACATCAATAT 60.223 45.455 10.02 0.00 42.82 1.28
44 45 3.353524 CGTTGCACGGAACATCAATATG 58.646 45.455 2.31 0.00 38.08 1.78
45 46 3.108144 GTTGCACGGAACATCAATATGC 58.892 45.455 0.00 0.00 36.50 3.14
46 47 2.363683 TGCACGGAACATCAATATGCA 58.636 42.857 0.00 0.00 36.50 3.96
47 48 2.950975 TGCACGGAACATCAATATGCAT 59.049 40.909 3.79 3.79 36.50 3.96
48 49 3.380954 TGCACGGAACATCAATATGCATT 59.619 39.130 3.54 0.00 36.50 3.56
49 50 4.142204 TGCACGGAACATCAATATGCATTT 60.142 37.500 3.54 0.00 36.50 2.32
50 51 4.207635 GCACGGAACATCAATATGCATTTG 59.792 41.667 3.54 9.69 36.50 2.32
51 52 5.342433 CACGGAACATCAATATGCATTTGT 58.658 37.500 3.54 0.00 36.50 2.83
52 53 6.493978 CACGGAACATCAATATGCATTTGTA 58.506 36.000 3.54 1.28 36.50 2.41
53 54 7.140705 CACGGAACATCAATATGCATTTGTAT 58.859 34.615 3.54 3.37 36.50 2.29
54 55 7.113825 CACGGAACATCAATATGCATTTGTATG 59.886 37.037 3.54 14.92 36.50 2.39
55 56 7.013178 ACGGAACATCAATATGCATTTGTATGA 59.987 33.333 22.17 14.98 36.50 2.15
56 57 7.536281 CGGAACATCAATATGCATTTGTATGAG 59.464 37.037 22.17 13.33 36.50 2.90
57 58 8.355169 GGAACATCAATATGCATTTGTATGAGT 58.645 33.333 22.17 15.99 36.50 3.41
60 61 9.565090 ACATCAATATGCATTTGTATGAGTAGT 57.435 29.630 22.17 12.77 36.50 2.73
69 70 9.448438 TGCATTTGTATGAGTAGTTTATCTTGT 57.552 29.630 0.00 0.00 33.37 3.16
70 71 9.708222 GCATTTGTATGAGTAGTTTATCTTGTG 57.292 33.333 0.00 0.00 33.37 3.33
75 76 9.462606 TGTATGAGTAGTTTATCTTGTGAGAGA 57.537 33.333 0.00 0.00 34.85 3.10
84 85 9.730705 AGTTTATCTTGTGAGAGAAAATGATGA 57.269 29.630 0.00 0.00 42.76 2.92
87 88 6.471976 TCTTGTGAGAGAAAATGATGAACG 57.528 37.500 0.00 0.00 0.00 3.95
88 89 6.223120 TCTTGTGAGAGAAAATGATGAACGA 58.777 36.000 0.00 0.00 0.00 3.85
89 90 6.367149 TCTTGTGAGAGAAAATGATGAACGAG 59.633 38.462 0.00 0.00 0.00 4.18
90 91 4.931601 TGTGAGAGAAAATGATGAACGAGG 59.068 41.667 0.00 0.00 0.00 4.63
91 92 4.331168 GTGAGAGAAAATGATGAACGAGGG 59.669 45.833 0.00 0.00 0.00 4.30
92 93 4.222810 TGAGAGAAAATGATGAACGAGGGA 59.777 41.667 0.00 0.00 0.00 4.20
93 94 5.165961 AGAGAAAATGATGAACGAGGGAA 57.834 39.130 0.00 0.00 0.00 3.97
94 95 5.181748 AGAGAAAATGATGAACGAGGGAAG 58.818 41.667 0.00 0.00 0.00 3.46
95 96 4.265073 AGAAAATGATGAACGAGGGAAGG 58.735 43.478 0.00 0.00 0.00 3.46
96 97 2.044123 AATGATGAACGAGGGAAGGC 57.956 50.000 0.00 0.00 0.00 4.35
97 98 0.181350 ATGATGAACGAGGGAAGGCC 59.819 55.000 0.00 0.00 0.00 5.19
98 99 1.198094 TGATGAACGAGGGAAGGCCA 61.198 55.000 5.01 0.00 35.15 5.36
99 100 0.181350 GATGAACGAGGGAAGGCCAT 59.819 55.000 5.01 0.00 35.15 4.40
100 101 1.416401 GATGAACGAGGGAAGGCCATA 59.584 52.381 5.01 0.00 35.15 2.74
101 102 1.507140 TGAACGAGGGAAGGCCATAT 58.493 50.000 5.01 0.00 35.15 1.78
102 103 2.684943 TGAACGAGGGAAGGCCATATA 58.315 47.619 5.01 0.00 35.15 0.86
103 104 3.248024 TGAACGAGGGAAGGCCATATAT 58.752 45.455 5.01 0.00 35.15 0.86
104 105 3.007940 TGAACGAGGGAAGGCCATATATG 59.992 47.826 5.01 5.68 35.15 1.78
105 106 1.279271 ACGAGGGAAGGCCATATATGC 59.721 52.381 5.01 3.21 35.15 3.14
106 107 1.278985 CGAGGGAAGGCCATATATGCA 59.721 52.381 5.01 0.00 35.15 3.96
107 108 2.290260 CGAGGGAAGGCCATATATGCAA 60.290 50.000 5.01 0.00 35.15 4.08
108 109 3.766545 GAGGGAAGGCCATATATGCAAA 58.233 45.455 5.01 0.00 35.15 3.68
109 110 4.347607 GAGGGAAGGCCATATATGCAAAT 58.652 43.478 5.01 0.00 35.15 2.32
110 111 4.091549 AGGGAAGGCCATATATGCAAATG 58.908 43.478 5.01 0.00 35.15 2.32
111 112 3.834231 GGGAAGGCCATATATGCAAATGT 59.166 43.478 5.01 0.00 35.15 2.71
112 113 4.322198 GGGAAGGCCATATATGCAAATGTG 60.322 45.833 5.01 0.00 35.15 3.21
113 114 4.322198 GGAAGGCCATATATGCAAATGTGG 60.322 45.833 5.01 0.00 40.20 4.17
114 115 4.116782 AGGCCATATATGCAAATGTGGA 57.883 40.909 5.01 0.00 39.75 4.02
115 116 4.084287 AGGCCATATATGCAAATGTGGAG 58.916 43.478 5.01 0.00 39.75 3.86
116 117 4.081406 GGCCATATATGCAAATGTGGAGA 58.919 43.478 7.24 0.00 39.75 3.71
117 118 4.157289 GGCCATATATGCAAATGTGGAGAG 59.843 45.833 7.24 0.00 39.75 3.20
118 119 4.157289 GCCATATATGCAAATGTGGAGAGG 59.843 45.833 7.24 0.00 39.75 3.69
119 120 4.703575 CCATATATGCAAATGTGGAGAGGG 59.296 45.833 7.24 0.00 39.75 4.30
120 121 2.734755 TATGCAAATGTGGAGAGGGG 57.265 50.000 0.00 0.00 0.00 4.79
121 122 0.706433 ATGCAAATGTGGAGAGGGGT 59.294 50.000 0.00 0.00 0.00 4.95
122 123 0.251297 TGCAAATGTGGAGAGGGGTG 60.251 55.000 0.00 0.00 0.00 4.61
123 124 0.251341 GCAAATGTGGAGAGGGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
124 125 1.538047 CAAATGTGGAGAGGGGTGTG 58.462 55.000 0.00 0.00 0.00 3.82
125 126 0.405585 AAATGTGGAGAGGGGTGTGG 59.594 55.000 0.00 0.00 0.00 4.17
126 127 1.500783 AATGTGGAGAGGGGTGTGGG 61.501 60.000 0.00 0.00 0.00 4.61
127 128 2.529389 GTGGAGAGGGGTGTGGGT 60.529 66.667 0.00 0.00 0.00 4.51
128 129 1.229400 GTGGAGAGGGGTGTGGGTA 60.229 63.158 0.00 0.00 0.00 3.69
129 130 0.620700 GTGGAGAGGGGTGTGGGTAT 60.621 60.000 0.00 0.00 0.00 2.73
130 131 0.326238 TGGAGAGGGGTGTGGGTATC 60.326 60.000 0.00 0.00 0.00 2.24
131 132 0.031010 GGAGAGGGGTGTGGGTATCT 60.031 60.000 0.00 0.00 0.00 1.98
132 133 1.625508 GGAGAGGGGTGTGGGTATCTT 60.626 57.143 0.00 0.00 0.00 2.40
133 134 2.197465 GAGAGGGGTGTGGGTATCTTT 58.803 52.381 0.00 0.00 0.00 2.52
134 135 2.576648 GAGAGGGGTGTGGGTATCTTTT 59.423 50.000 0.00 0.00 0.00 2.27
135 136 2.993863 AGAGGGGTGTGGGTATCTTTTT 59.006 45.455 0.00 0.00 0.00 1.94
136 137 3.089284 GAGGGGTGTGGGTATCTTTTTG 58.911 50.000 0.00 0.00 0.00 2.44
137 138 1.548719 GGGGTGTGGGTATCTTTTTGC 59.451 52.381 0.00 0.00 0.00 3.68
138 139 2.243810 GGGTGTGGGTATCTTTTTGCA 58.756 47.619 0.00 0.00 0.00 4.08
139 140 2.630580 GGGTGTGGGTATCTTTTTGCAA 59.369 45.455 0.00 0.00 0.00 4.08
140 141 3.070302 GGGTGTGGGTATCTTTTTGCAAA 59.930 43.478 8.05 8.05 0.00 3.68
141 142 4.443598 GGGTGTGGGTATCTTTTTGCAAAA 60.444 41.667 20.46 20.46 0.00 2.44
142 143 5.304778 GGTGTGGGTATCTTTTTGCAAAAT 58.695 37.500 24.39 12.94 0.00 1.82
143 144 5.762711 GGTGTGGGTATCTTTTTGCAAAATT 59.237 36.000 24.39 14.72 0.00 1.82
144 145 6.293353 GGTGTGGGTATCTTTTTGCAAAATTG 60.293 38.462 24.39 19.07 0.00 2.32
160 161 6.041423 CAAAATTGCCATACTTTCCTTCCT 57.959 37.500 0.00 0.00 0.00 3.36
161 162 7.169158 CAAAATTGCCATACTTTCCTTCCTA 57.831 36.000 0.00 0.00 0.00 2.94
162 163 7.785033 CAAAATTGCCATACTTTCCTTCCTAT 58.215 34.615 0.00 0.00 0.00 2.57
163 164 7.588497 AAATTGCCATACTTTCCTTCCTATC 57.412 36.000 0.00 0.00 0.00 2.08
164 165 4.706842 TGCCATACTTTCCTTCCTATCC 57.293 45.455 0.00 0.00 0.00 2.59
165 166 3.071023 TGCCATACTTTCCTTCCTATCCG 59.929 47.826 0.00 0.00 0.00 4.18
166 167 3.071167 GCCATACTTTCCTTCCTATCCGT 59.929 47.826 0.00 0.00 0.00 4.69
167 168 4.444449 GCCATACTTTCCTTCCTATCCGTT 60.444 45.833 0.00 0.00 0.00 4.44
168 169 5.221581 GCCATACTTTCCTTCCTATCCGTTA 60.222 44.000 0.00 0.00 0.00 3.18
169 170 6.456501 CCATACTTTCCTTCCTATCCGTTAG 58.543 44.000 0.00 0.00 0.00 2.34
170 171 6.267014 CCATACTTTCCTTCCTATCCGTTAGA 59.733 42.308 0.00 0.00 0.00 2.10
171 172 7.038941 CCATACTTTCCTTCCTATCCGTTAGAT 60.039 40.741 0.00 0.00 39.15 1.98
172 173 9.021807 CATACTTTCCTTCCTATCCGTTAGATA 57.978 37.037 0.00 0.00 36.33 1.98
173 174 9.771140 ATACTTTCCTTCCTATCCGTTAGATAT 57.229 33.333 0.00 0.00 36.84 1.63
175 176 9.597681 ACTTTCCTTCCTATCCGTTAGATATAA 57.402 33.333 0.00 0.00 36.84 0.98
187 188 8.627208 TCCGTTAGATATAAATTAGACGGTCT 57.373 34.615 15.95 15.95 46.35 3.85
188 189 9.725019 TCCGTTAGATATAAATTAGACGGTCTA 57.275 33.333 13.70 13.70 46.35 2.59
198 199 6.665992 AATTAGACGGTCTATATTGCAGGA 57.334 37.500 17.96 1.17 0.00 3.86
199 200 6.859112 ATTAGACGGTCTATATTGCAGGAT 57.141 37.500 17.96 3.44 0.00 3.24
200 201 4.527509 AGACGGTCTATATTGCAGGATG 57.472 45.455 9.33 0.00 40.87 3.51
201 202 3.259374 AGACGGTCTATATTGCAGGATGG 59.741 47.826 9.33 0.00 35.86 3.51
202 203 2.289694 ACGGTCTATATTGCAGGATGGC 60.290 50.000 0.00 0.00 35.86 4.40
203 204 2.289631 CGGTCTATATTGCAGGATGGCA 60.290 50.000 0.00 0.00 43.19 4.92
204 205 3.341823 GGTCTATATTGCAGGATGGCAG 58.658 50.000 0.00 0.00 45.88 4.85
205 206 3.341823 GTCTATATTGCAGGATGGCAGG 58.658 50.000 0.00 0.00 45.88 4.85
206 207 2.089980 CTATATTGCAGGATGGCAGGC 58.910 52.381 0.00 0.00 45.88 4.85
207 208 0.186630 ATATTGCAGGATGGCAGGCA 59.813 50.000 0.00 0.00 45.88 4.75
208 209 0.752743 TATTGCAGGATGGCAGGCAC 60.753 55.000 0.00 0.00 45.88 5.01
209 210 2.791613 ATTGCAGGATGGCAGGCACA 62.792 55.000 0.00 0.00 45.88 4.57
210 211 3.446570 GCAGGATGGCAGGCACAC 61.447 66.667 0.00 0.00 35.86 3.82
211 212 2.753043 CAGGATGGCAGGCACACC 60.753 66.667 12.37 12.37 0.00 4.16
212 213 3.259314 AGGATGGCAGGCACACCA 61.259 61.111 19.51 0.00 41.01 4.17
215 216 2.765279 ATGGCAGGCACACCATCA 59.235 55.556 0.00 0.00 42.69 3.07
216 217 1.308666 ATGGCAGGCACACCATCAT 59.691 52.632 0.00 0.00 42.69 2.45
217 218 0.754217 ATGGCAGGCACACCATCATC 60.754 55.000 0.00 0.00 42.69 2.92
218 219 1.378911 GGCAGGCACACCATCATCA 60.379 57.895 0.00 0.00 39.06 3.07
219 220 1.381928 GGCAGGCACACCATCATCAG 61.382 60.000 0.00 0.00 39.06 2.90
220 221 2.001361 GCAGGCACACCATCATCAGC 62.001 60.000 0.00 0.00 39.06 4.26
221 222 0.678684 CAGGCACACCATCATCAGCA 60.679 55.000 0.00 0.00 39.06 4.41
222 223 0.038599 AGGCACACCATCATCAGCAA 59.961 50.000 0.00 0.00 39.06 3.91
223 224 0.171903 GGCACACCATCATCAGCAAC 59.828 55.000 0.00 0.00 35.26 4.17
224 225 1.171308 GCACACCATCATCAGCAACT 58.829 50.000 0.00 0.00 0.00 3.16
225 226 1.131883 GCACACCATCATCAGCAACTC 59.868 52.381 0.00 0.00 0.00 3.01
226 227 2.708051 CACACCATCATCAGCAACTCT 58.292 47.619 0.00 0.00 0.00 3.24
227 228 2.418976 CACACCATCATCAGCAACTCTG 59.581 50.000 0.00 0.00 44.21 3.35
228 229 2.039480 ACACCATCATCAGCAACTCTGT 59.961 45.455 0.00 0.00 43.32 3.41
229 230 3.079578 CACCATCATCAGCAACTCTGTT 58.920 45.455 0.00 0.00 43.32 3.16
230 231 3.504906 CACCATCATCAGCAACTCTGTTT 59.495 43.478 0.00 0.00 43.32 2.83
231 232 4.022589 CACCATCATCAGCAACTCTGTTTT 60.023 41.667 0.00 0.00 43.32 2.43
232 233 4.586001 ACCATCATCAGCAACTCTGTTTTT 59.414 37.500 0.00 0.00 43.32 1.94
357 359 8.697846 ATCTGAAAAATGTTCAGCACATATTG 57.302 30.769 8.28 0.00 46.23 1.90
362 365 9.584839 GAAAAATGTTCAGCACATATTGAAAAC 57.415 29.630 0.00 0.00 46.23 2.43
541 544 8.785329 TGTGTGCTGAAAAAGTATATATGTGA 57.215 30.769 0.00 0.00 0.00 3.58
643 648 5.064707 CCTACCATTCAGAAAATGTACGTGG 59.935 44.000 0.00 0.00 0.00 4.94
646 651 4.142403 CCATTCAGAAAATGTACGTGGCAT 60.142 41.667 0.00 0.00 0.00 4.40
660 666 5.402464 ACGTGGCATTTTTGAAAAATGTC 57.598 34.783 30.52 30.52 41.29 3.06
873 910 1.640917 ACTTCGACTTTAGAGGCCCA 58.359 50.000 0.00 0.00 0.00 5.36
874 911 1.275573 ACTTCGACTTTAGAGGCCCAC 59.724 52.381 0.00 0.00 0.00 4.61
875 912 0.245539 TTCGACTTTAGAGGCCCACG 59.754 55.000 0.00 0.00 0.00 4.94
876 913 0.609957 TCGACTTTAGAGGCCCACGA 60.610 55.000 0.00 0.00 0.00 4.35
877 914 0.179134 CGACTTTAGAGGCCCACGAG 60.179 60.000 0.00 0.00 0.00 4.18
878 915 0.460459 GACTTTAGAGGCCCACGAGC 60.460 60.000 0.00 0.00 0.00 5.03
879 916 1.192146 ACTTTAGAGGCCCACGAGCA 61.192 55.000 0.00 0.00 0.00 4.26
880 917 0.741221 CTTTAGAGGCCCACGAGCAC 60.741 60.000 0.00 0.00 0.00 4.40
881 918 1.476845 TTTAGAGGCCCACGAGCACA 61.477 55.000 0.00 0.00 0.00 4.57
913 951 2.460853 CCCCAGTTGTCCCACCTGT 61.461 63.158 0.00 0.00 0.00 4.00
914 952 1.073199 CCCAGTTGTCCCACCTGTC 59.927 63.158 0.00 0.00 0.00 3.51
915 953 1.705002 CCCAGTTGTCCCACCTGTCA 61.705 60.000 0.00 0.00 0.00 3.58
916 954 0.535102 CCAGTTGTCCCACCTGTCAC 60.535 60.000 0.00 0.00 0.00 3.67
917 955 0.880278 CAGTTGTCCCACCTGTCACG 60.880 60.000 0.00 0.00 0.00 4.35
918 956 1.145377 GTTGTCCCACCTGTCACGT 59.855 57.895 0.00 0.00 0.00 4.49
919 957 0.878961 GTTGTCCCACCTGTCACGTC 60.879 60.000 0.00 0.00 0.00 4.34
920 958 1.046472 TTGTCCCACCTGTCACGTCT 61.046 55.000 0.00 0.00 0.00 4.18
921 959 1.289380 GTCCCACCTGTCACGTCTC 59.711 63.158 0.00 0.00 0.00 3.36
922 960 1.153061 TCCCACCTGTCACGTCTCT 59.847 57.895 0.00 0.00 0.00 3.10
923 961 0.402887 TCCCACCTGTCACGTCTCTA 59.597 55.000 0.00 0.00 0.00 2.43
924 962 1.202964 TCCCACCTGTCACGTCTCTAA 60.203 52.381 0.00 0.00 0.00 2.10
925 963 1.825474 CCCACCTGTCACGTCTCTAAT 59.175 52.381 0.00 0.00 0.00 1.73
926 964 2.233922 CCCACCTGTCACGTCTCTAATT 59.766 50.000 0.00 0.00 0.00 1.40
927 965 3.306780 CCCACCTGTCACGTCTCTAATTT 60.307 47.826 0.00 0.00 0.00 1.82
928 966 3.927142 CCACCTGTCACGTCTCTAATTTC 59.073 47.826 0.00 0.00 0.00 2.17
929 967 4.322049 CCACCTGTCACGTCTCTAATTTCT 60.322 45.833 0.00 0.00 0.00 2.52
930 968 4.859798 CACCTGTCACGTCTCTAATTTCTC 59.140 45.833 0.00 0.00 0.00 2.87
931 969 4.523173 ACCTGTCACGTCTCTAATTTCTCA 59.477 41.667 0.00 0.00 0.00 3.27
932 970 5.010719 ACCTGTCACGTCTCTAATTTCTCAA 59.989 40.000 0.00 0.00 0.00 3.02
933 971 5.346281 CCTGTCACGTCTCTAATTTCTCAAC 59.654 44.000 0.00 0.00 0.00 3.18
934 972 5.838529 TGTCACGTCTCTAATTTCTCAACA 58.161 37.500 0.00 0.00 0.00 3.33
935 973 6.277605 TGTCACGTCTCTAATTTCTCAACAA 58.722 36.000 0.00 0.00 0.00 2.83
936 974 6.200286 TGTCACGTCTCTAATTTCTCAACAAC 59.800 38.462 0.00 0.00 0.00 3.32
937 975 6.200286 GTCACGTCTCTAATTTCTCAACAACA 59.800 38.462 0.00 0.00 0.00 3.33
938 976 6.759356 TCACGTCTCTAATTTCTCAACAACAA 59.241 34.615 0.00 0.00 0.00 2.83
939 977 7.279090 TCACGTCTCTAATTTCTCAACAACAAA 59.721 33.333 0.00 0.00 0.00 2.83
940 978 7.908082 CACGTCTCTAATTTCTCAACAACAAAA 59.092 33.333 0.00 0.00 0.00 2.44
941 979 8.455682 ACGTCTCTAATTTCTCAACAACAAAAA 58.544 29.630 0.00 0.00 0.00 1.94
1375 1413 2.473760 CGTCCGATCGACCAGAGCT 61.474 63.158 18.66 0.00 38.36 4.09
1455 1502 3.496337 CCATATCTGACCTGCAGCATCTT 60.496 47.826 8.66 0.96 44.52 2.40
1532 1579 5.124617 TGCACAACAATGGCTTTATTCGATA 59.875 36.000 0.00 0.00 0.00 2.92
1545 1592 6.704493 GCTTTATTCGATAAGTCCACATGGTA 59.296 38.462 0.00 0.00 36.34 3.25
1546 1593 7.225931 GCTTTATTCGATAAGTCCACATGGTAA 59.774 37.037 0.00 0.00 36.34 2.85
1570 1639 8.560355 AACAATGACTGTGTTGCTATGTATTA 57.440 30.769 0.00 0.00 38.67 0.98
1665 1734 8.484799 CAGATTGTTTCTGTCATTGACAAATTG 58.515 33.333 19.44 8.85 45.79 2.32
1683 1752 3.383620 TTGGTCACATGAATTTGCCAC 57.616 42.857 0.00 0.00 0.00 5.01
1901 2010 7.290857 CACTAAATTGCATAGTGTTACTCGT 57.709 36.000 15.03 0.00 43.31 4.18
1922 2220 3.207265 TCAACTTGGCAACTTGCTAGA 57.793 42.857 13.43 0.00 44.28 2.43
1976 2275 6.016024 CCCATACAAACCCTGAATGACATATG 60.016 42.308 0.00 0.00 0.00 1.78
1997 2296 3.285484 GCATTCACCTCCATCTTCACAT 58.715 45.455 0.00 0.00 0.00 3.21
2000 2299 5.533903 GCATTCACCTCCATCTTCACATATT 59.466 40.000 0.00 0.00 0.00 1.28
2034 2334 0.533755 GCTAGGCCAGTACCTGCATG 60.534 60.000 5.01 0.00 41.34 4.06
2037 2337 1.285280 AGGCCAGTACCTGCATGTAA 58.715 50.000 5.01 0.00 39.13 2.41
2113 2413 1.352352 CTCCACCATGGACTTGTCCTT 59.648 52.381 21.47 11.20 42.67 3.36
2237 2537 2.861147 AGAAGTAGTCCAACTTGCCC 57.139 50.000 0.00 0.00 39.78 5.36
2243 2543 1.073548 GTCCAACTTGCCCCGGTTA 59.926 57.895 0.00 0.00 0.00 2.85
2253 2553 0.609681 GCCCCGGTTAATGTTGTCCA 60.610 55.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.434336 ACGGGCATCTTGCTAGTATGAA 59.566 45.455 0.61 0.00 44.28 2.57
1 2 2.039418 ACGGGCATCTTGCTAGTATGA 58.961 47.619 10.17 0.00 44.28 2.15
2 3 2.138320 CACGGGCATCTTGCTAGTATG 58.862 52.381 0.00 0.00 44.28 2.39
4 5 0.179084 GCACGGGCATCTTGCTAGTA 60.179 55.000 3.77 0.00 44.28 1.82
5 6 1.450312 GCACGGGCATCTTGCTAGT 60.450 57.895 3.77 0.00 44.28 2.57
6 7 2.528743 CGCACGGGCATCTTGCTAG 61.529 63.158 11.77 0.00 44.28 3.42
7 8 2.511373 CGCACGGGCATCTTGCTA 60.511 61.111 11.77 0.00 44.28 3.49
8 9 4.704833 ACGCACGGGCATCTTGCT 62.705 61.111 11.77 0.00 44.28 3.91
9 10 3.737172 AACGCACGGGCATCTTGC 61.737 61.111 11.77 0.00 44.08 4.01
10 11 2.176546 CAACGCACGGGCATCTTG 59.823 61.111 11.77 3.62 41.24 3.02
11 12 3.737172 GCAACGCACGGGCATCTT 61.737 61.111 11.77 0.00 41.24 2.40
24 25 3.108144 GCATATTGATGTTCCGTGCAAC 58.892 45.455 0.00 0.00 35.30 4.17
25 26 2.751806 TGCATATTGATGTTCCGTGCAA 59.248 40.909 0.00 0.00 38.07 4.08
26 27 2.363683 TGCATATTGATGTTCCGTGCA 58.636 42.857 0.00 0.00 38.62 4.57
27 28 3.631145 ATGCATATTGATGTTCCGTGC 57.369 42.857 0.00 0.00 35.30 5.34
28 29 5.342433 ACAAATGCATATTGATGTTCCGTG 58.658 37.500 20.96 0.00 35.30 4.94
29 30 5.581126 ACAAATGCATATTGATGTTCCGT 57.419 34.783 20.96 0.00 35.30 4.69
30 31 7.361894 TCATACAAATGCATATTGATGTTCCG 58.638 34.615 20.96 7.09 35.30 4.30
31 32 8.355169 ACTCATACAAATGCATATTGATGTTCC 58.645 33.333 20.96 0.00 35.30 3.62
34 35 9.565090 ACTACTCATACAAATGCATATTGATGT 57.435 29.630 20.96 14.21 35.30 3.06
43 44 9.448438 ACAAGATAAACTACTCATACAAATGCA 57.552 29.630 0.00 0.00 32.76 3.96
44 45 9.708222 CACAAGATAAACTACTCATACAAATGC 57.292 33.333 0.00 0.00 32.76 3.56
49 50 9.462606 TCTCTCACAAGATAAACTACTCATACA 57.537 33.333 0.00 0.00 0.00 2.29
58 59 9.730705 TCATCATTTTCTCTCACAAGATAAACT 57.269 29.630 0.00 0.00 30.02 2.66
61 62 8.659491 CGTTCATCATTTTCTCTCACAAGATAA 58.341 33.333 0.00 0.00 0.00 1.75
62 63 8.034804 TCGTTCATCATTTTCTCTCACAAGATA 58.965 33.333 0.00 0.00 0.00 1.98
63 64 6.875726 TCGTTCATCATTTTCTCTCACAAGAT 59.124 34.615 0.00 0.00 0.00 2.40
64 65 6.223120 TCGTTCATCATTTTCTCTCACAAGA 58.777 36.000 0.00 0.00 0.00 3.02
65 66 6.401903 CCTCGTTCATCATTTTCTCTCACAAG 60.402 42.308 0.00 0.00 0.00 3.16
66 67 5.409520 CCTCGTTCATCATTTTCTCTCACAA 59.590 40.000 0.00 0.00 0.00 3.33
67 68 4.931601 CCTCGTTCATCATTTTCTCTCACA 59.068 41.667 0.00 0.00 0.00 3.58
68 69 4.331168 CCCTCGTTCATCATTTTCTCTCAC 59.669 45.833 0.00 0.00 0.00 3.51
69 70 4.222810 TCCCTCGTTCATCATTTTCTCTCA 59.777 41.667 0.00 0.00 0.00 3.27
70 71 4.759782 TCCCTCGTTCATCATTTTCTCTC 58.240 43.478 0.00 0.00 0.00 3.20
71 72 4.826274 TCCCTCGTTCATCATTTTCTCT 57.174 40.909 0.00 0.00 0.00 3.10
72 73 4.333926 CCTTCCCTCGTTCATCATTTTCTC 59.666 45.833 0.00 0.00 0.00 2.87
73 74 4.265073 CCTTCCCTCGTTCATCATTTTCT 58.735 43.478 0.00 0.00 0.00 2.52
74 75 3.181496 GCCTTCCCTCGTTCATCATTTTC 60.181 47.826 0.00 0.00 0.00 2.29
75 76 2.755103 GCCTTCCCTCGTTCATCATTTT 59.245 45.455 0.00 0.00 0.00 1.82
76 77 2.369394 GCCTTCCCTCGTTCATCATTT 58.631 47.619 0.00 0.00 0.00 2.32
77 78 1.408822 GGCCTTCCCTCGTTCATCATT 60.409 52.381 0.00 0.00 0.00 2.57
78 79 0.181350 GGCCTTCCCTCGTTCATCAT 59.819 55.000 0.00 0.00 0.00 2.45
79 80 1.198094 TGGCCTTCCCTCGTTCATCA 61.198 55.000 3.32 0.00 0.00 3.07
80 81 0.181350 ATGGCCTTCCCTCGTTCATC 59.819 55.000 3.32 0.00 0.00 2.92
81 82 1.507140 TATGGCCTTCCCTCGTTCAT 58.493 50.000 3.32 0.00 0.00 2.57
82 83 1.507140 ATATGGCCTTCCCTCGTTCA 58.493 50.000 3.32 0.00 0.00 3.18
83 84 3.600388 CATATATGGCCTTCCCTCGTTC 58.400 50.000 3.32 0.00 0.00 3.95
84 85 2.290323 GCATATATGGCCTTCCCTCGTT 60.290 50.000 14.51 0.00 0.00 3.85
85 86 1.279271 GCATATATGGCCTTCCCTCGT 59.721 52.381 14.51 0.00 0.00 4.18
86 87 1.278985 TGCATATATGGCCTTCCCTCG 59.721 52.381 14.51 0.00 0.00 4.63
87 88 3.439857 TTGCATATATGGCCTTCCCTC 57.560 47.619 14.51 0.00 0.00 4.30
88 89 3.901570 TTTGCATATATGGCCTTCCCT 57.098 42.857 14.51 0.00 0.00 4.20
89 90 3.834231 ACATTTGCATATATGGCCTTCCC 59.166 43.478 14.51 0.00 0.00 3.97
90 91 4.322198 CCACATTTGCATATATGGCCTTCC 60.322 45.833 14.51 0.00 0.00 3.46
91 92 4.523943 TCCACATTTGCATATATGGCCTTC 59.476 41.667 14.51 0.00 0.00 3.46
92 93 4.482030 TCCACATTTGCATATATGGCCTT 58.518 39.130 14.51 0.00 0.00 4.35
93 94 4.084287 CTCCACATTTGCATATATGGCCT 58.916 43.478 14.51 0.00 0.00 5.19
94 95 4.081406 TCTCCACATTTGCATATATGGCC 58.919 43.478 14.51 0.00 0.00 5.36
95 96 4.157289 CCTCTCCACATTTGCATATATGGC 59.843 45.833 14.51 7.40 0.00 4.40
96 97 4.703575 CCCTCTCCACATTTGCATATATGG 59.296 45.833 14.51 8.04 0.00 2.74
97 98 4.703575 CCCCTCTCCACATTTGCATATATG 59.296 45.833 8.45 8.45 0.00 1.78
98 99 4.354987 ACCCCTCTCCACATTTGCATATAT 59.645 41.667 0.00 0.00 0.00 0.86
99 100 3.721575 ACCCCTCTCCACATTTGCATATA 59.278 43.478 0.00 0.00 0.00 0.86
100 101 2.515429 ACCCCTCTCCACATTTGCATAT 59.485 45.455 0.00 0.00 0.00 1.78
101 102 1.922447 ACCCCTCTCCACATTTGCATA 59.078 47.619 0.00 0.00 0.00 3.14
102 103 0.706433 ACCCCTCTCCACATTTGCAT 59.294 50.000 0.00 0.00 0.00 3.96
103 104 0.251297 CACCCCTCTCCACATTTGCA 60.251 55.000 0.00 0.00 0.00 4.08
104 105 0.251341 ACACCCCTCTCCACATTTGC 60.251 55.000 0.00 0.00 0.00 3.68
105 106 1.538047 CACACCCCTCTCCACATTTG 58.462 55.000 0.00 0.00 0.00 2.32
106 107 0.405585 CCACACCCCTCTCCACATTT 59.594 55.000 0.00 0.00 0.00 2.32
107 108 1.500783 CCCACACCCCTCTCCACATT 61.501 60.000 0.00 0.00 0.00 2.71
108 109 1.925455 CCCACACCCCTCTCCACAT 60.925 63.158 0.00 0.00 0.00 3.21
109 110 2.038545 TACCCACACCCCTCTCCACA 62.039 60.000 0.00 0.00 0.00 4.17
110 111 0.620700 ATACCCACACCCCTCTCCAC 60.621 60.000 0.00 0.00 0.00 4.02
111 112 0.326238 GATACCCACACCCCTCTCCA 60.326 60.000 0.00 0.00 0.00 3.86
112 113 0.031010 AGATACCCACACCCCTCTCC 60.031 60.000 0.00 0.00 0.00 3.71
113 114 1.880941 AAGATACCCACACCCCTCTC 58.119 55.000 0.00 0.00 0.00 3.20
114 115 2.361085 AAAGATACCCACACCCCTCT 57.639 50.000 0.00 0.00 0.00 3.69
115 116 3.089284 CAAAAAGATACCCACACCCCTC 58.911 50.000 0.00 0.00 0.00 4.30
116 117 2.821625 GCAAAAAGATACCCACACCCCT 60.822 50.000 0.00 0.00 0.00 4.79
117 118 1.548719 GCAAAAAGATACCCACACCCC 59.451 52.381 0.00 0.00 0.00 4.95
118 119 2.243810 TGCAAAAAGATACCCACACCC 58.756 47.619 0.00 0.00 0.00 4.61
119 120 4.329462 TTTGCAAAAAGATACCCACACC 57.671 40.909 10.02 0.00 0.00 4.16
120 121 6.657888 CAATTTTGCAAAAAGATACCCACAC 58.342 36.000 27.10 0.00 0.00 3.82
121 122 6.857777 CAATTTTGCAAAAAGATACCCACA 57.142 33.333 27.10 1.37 0.00 4.17
137 138 6.041423 AGGAAGGAAAGTATGGCAATTTTG 57.959 37.500 0.00 0.00 0.00 2.44
138 139 7.069950 GGATAGGAAGGAAAGTATGGCAATTTT 59.930 37.037 0.00 0.00 0.00 1.82
139 140 6.551227 GGATAGGAAGGAAAGTATGGCAATTT 59.449 38.462 0.00 0.00 0.00 1.82
140 141 6.071320 GGATAGGAAGGAAAGTATGGCAATT 58.929 40.000 0.00 0.00 0.00 2.32
141 142 5.635120 GGATAGGAAGGAAAGTATGGCAAT 58.365 41.667 0.00 0.00 0.00 3.56
142 143 4.444306 CGGATAGGAAGGAAAGTATGGCAA 60.444 45.833 0.00 0.00 0.00 4.52
143 144 3.071023 CGGATAGGAAGGAAAGTATGGCA 59.929 47.826 0.00 0.00 0.00 4.92
144 145 3.071167 ACGGATAGGAAGGAAAGTATGGC 59.929 47.826 0.00 0.00 0.00 4.40
145 146 4.957684 ACGGATAGGAAGGAAAGTATGG 57.042 45.455 0.00 0.00 0.00 2.74
146 147 7.286215 TCTAACGGATAGGAAGGAAAGTATG 57.714 40.000 0.00 0.00 32.09 2.39
147 148 9.771140 ATATCTAACGGATAGGAAGGAAAGTAT 57.229 33.333 0.00 0.00 39.89 2.12
149 150 9.597681 TTATATCTAACGGATAGGAAGGAAAGT 57.402 33.333 0.00 0.00 39.89 2.66
172 173 8.812972 TCCTGCAATATAGACCGTCTAATTTAT 58.187 33.333 12.26 3.77 31.96 1.40
173 174 8.185506 TCCTGCAATATAGACCGTCTAATTTA 57.814 34.615 12.26 1.55 31.96 1.40
174 175 7.062749 TCCTGCAATATAGACCGTCTAATTT 57.937 36.000 12.26 6.47 31.96 1.82
175 176 6.665992 TCCTGCAATATAGACCGTCTAATT 57.334 37.500 12.26 10.14 31.96 1.40
176 177 6.351371 CCATCCTGCAATATAGACCGTCTAAT 60.351 42.308 12.26 5.19 31.96 1.73
177 178 5.047306 CCATCCTGCAATATAGACCGTCTAA 60.047 44.000 12.26 3.18 31.96 2.10
178 179 4.462834 CCATCCTGCAATATAGACCGTCTA 59.537 45.833 10.70 10.70 32.87 2.59
179 180 3.259374 CCATCCTGCAATATAGACCGTCT 59.741 47.826 6.25 6.25 0.00 4.18
180 181 3.589988 CCATCCTGCAATATAGACCGTC 58.410 50.000 0.00 0.00 0.00 4.79
181 182 2.289694 GCCATCCTGCAATATAGACCGT 60.290 50.000 0.00 0.00 0.00 4.83
182 183 2.289631 TGCCATCCTGCAATATAGACCG 60.290 50.000 0.00 0.00 38.56 4.79
183 184 3.341823 CTGCCATCCTGCAATATAGACC 58.658 50.000 0.00 0.00 41.51 3.85
184 185 3.341823 CCTGCCATCCTGCAATATAGAC 58.658 50.000 0.00 0.00 41.51 2.59
185 186 2.290514 GCCTGCCATCCTGCAATATAGA 60.291 50.000 0.00 0.00 41.51 1.98
186 187 2.089980 GCCTGCCATCCTGCAATATAG 58.910 52.381 0.00 0.00 41.51 1.31
187 188 1.424684 TGCCTGCCATCCTGCAATATA 59.575 47.619 0.00 0.00 41.51 0.86
188 189 0.186630 TGCCTGCCATCCTGCAATAT 59.813 50.000 0.00 0.00 41.51 1.28
189 190 0.752743 GTGCCTGCCATCCTGCAATA 60.753 55.000 0.00 0.00 41.51 1.90
190 191 2.056223 GTGCCTGCCATCCTGCAAT 61.056 57.895 0.00 0.00 41.51 3.56
191 192 2.677524 GTGCCTGCCATCCTGCAA 60.678 61.111 0.00 0.00 41.51 4.08
192 193 3.969119 TGTGCCTGCCATCCTGCA 61.969 61.111 0.00 0.00 39.37 4.41
193 194 3.446570 GTGTGCCTGCCATCCTGC 61.447 66.667 0.00 0.00 0.00 4.85
194 195 2.753043 GGTGTGCCTGCCATCCTG 60.753 66.667 0.00 0.00 0.00 3.86
195 196 2.619446 ATGGTGTGCCTGCCATCCT 61.619 57.895 0.00 0.00 41.24 3.24
196 197 2.043652 ATGGTGTGCCTGCCATCC 60.044 61.111 0.00 0.00 41.24 3.51
199 200 1.378911 GATGATGGTGTGCCTGCCA 60.379 57.895 0.00 0.00 39.33 4.92
200 201 1.378911 TGATGATGGTGTGCCTGCC 60.379 57.895 0.00 0.00 35.27 4.85
201 202 2.001361 GCTGATGATGGTGTGCCTGC 62.001 60.000 0.00 0.00 35.27 4.85
202 203 0.678684 TGCTGATGATGGTGTGCCTG 60.679 55.000 0.00 0.00 35.27 4.85
203 204 0.038599 TTGCTGATGATGGTGTGCCT 59.961 50.000 0.00 0.00 35.27 4.75
204 205 0.171903 GTTGCTGATGATGGTGTGCC 59.828 55.000 0.00 0.00 0.00 5.01
205 206 1.131883 GAGTTGCTGATGATGGTGTGC 59.868 52.381 0.00 0.00 0.00 4.57
206 207 2.708051 AGAGTTGCTGATGATGGTGTG 58.292 47.619 0.00 0.00 0.00 3.82
357 359 9.565213 CATTTTGAGACAGATGGAATAGTTTTC 57.435 33.333 0.00 0.00 0.00 2.29
362 365 9.605275 TCTTACATTTTGAGACAGATGGAATAG 57.395 33.333 0.00 0.00 0.00 1.73
398 401 7.989170 TGAATATACTGCATCAATCTCAGTTGT 59.011 33.333 0.00 0.00 40.96 3.32
409 412 9.394767 ACTACATGTTTTGAATATACTGCATCA 57.605 29.630 2.30 0.00 0.00 3.07
614 619 7.119262 CGTACATTTTCTGAATGGTAGGAAACT 59.881 37.037 4.06 0.00 36.86 2.66
643 648 4.275443 TGCCTGGACATTTTTCAAAAATGC 59.725 37.500 28.20 21.47 40.35 3.56
646 651 5.530543 GGAATGCCTGGACATTTTTCAAAAA 59.469 36.000 14.58 0.00 40.31 1.94
735 744 6.310224 CACCCTAAAGAACATTTTTAATGGCG 59.690 38.462 4.61 0.00 0.00 5.69
873 910 1.673033 CGGAGGAATCTTTGTGCTCGT 60.673 52.381 0.00 0.00 34.50 4.18
874 911 1.002366 CGGAGGAATCTTTGTGCTCG 58.998 55.000 0.00 0.00 34.50 5.03
875 912 0.729690 GCGGAGGAATCTTTGTGCTC 59.270 55.000 0.00 0.00 33.03 4.26
876 913 0.678048 GGCGGAGGAATCTTTGTGCT 60.678 55.000 0.00 0.00 0.00 4.40
877 914 1.657751 GGGCGGAGGAATCTTTGTGC 61.658 60.000 0.00 0.00 0.00 4.57
878 915 1.032114 GGGGCGGAGGAATCTTTGTG 61.032 60.000 0.00 0.00 0.00 3.33
879 916 1.303282 GGGGCGGAGGAATCTTTGT 59.697 57.895 0.00 0.00 0.00 2.83
880 917 1.453928 GGGGGCGGAGGAATCTTTG 60.454 63.158 0.00 0.00 0.00 2.77
881 918 1.926426 CTGGGGGCGGAGGAATCTTT 61.926 60.000 0.00 0.00 0.00 2.52
913 951 6.277605 TGTTGTTGAGAAATTAGAGACGTGA 58.722 36.000 0.00 0.00 0.00 4.35
914 952 6.525121 TGTTGTTGAGAAATTAGAGACGTG 57.475 37.500 0.00 0.00 0.00 4.49
915 953 7.548196 TTTGTTGTTGAGAAATTAGAGACGT 57.452 32.000 0.00 0.00 0.00 4.34
916 954 8.835467 TTTTTGTTGTTGAGAAATTAGAGACG 57.165 30.769 0.00 0.00 0.00 4.18
939 977 4.566987 GATAGAGACGTGACAGGGTTTTT 58.433 43.478 0.00 0.00 0.00 1.94
940 978 3.367087 CGATAGAGACGTGACAGGGTTTT 60.367 47.826 0.00 0.00 39.76 2.43
941 979 2.163815 CGATAGAGACGTGACAGGGTTT 59.836 50.000 0.00 0.00 39.76 3.27
942 980 1.743958 CGATAGAGACGTGACAGGGTT 59.256 52.381 0.00 0.00 39.76 4.11
943 981 1.380524 CGATAGAGACGTGACAGGGT 58.619 55.000 0.00 0.00 39.76 4.34
944 982 0.029567 GCGATAGAGACGTGACAGGG 59.970 60.000 0.00 0.00 39.76 4.45
945 983 0.029567 GGCGATAGAGACGTGACAGG 59.970 60.000 0.00 0.00 39.76 4.00
946 984 0.316278 CGGCGATAGAGACGTGACAG 60.316 60.000 0.00 0.00 39.76 3.51
947 985 1.719709 CGGCGATAGAGACGTGACA 59.280 57.895 0.00 0.00 39.76 3.58
948 986 1.654743 GCGGCGATAGAGACGTGAC 60.655 63.158 12.98 0.00 39.76 3.67
1371 1409 1.811679 GTGCAGAACCCGCTAGCTC 60.812 63.158 13.93 3.16 0.00 4.09
1375 1413 2.209064 GAGTCGTGCAGAACCCGCTA 62.209 60.000 0.00 0.00 0.00 4.26
1391 1429 0.390866 CATCGGCAGTTGAGCAGAGT 60.391 55.000 0.00 0.00 41.78 3.24
1394 1432 0.957395 AACCATCGGCAGTTGAGCAG 60.957 55.000 0.00 0.00 35.83 4.24
1424 1463 5.221722 TGCAGGTCAGATATGGAATTAGGTC 60.222 44.000 0.00 0.00 0.00 3.85
1455 1502 4.551702 TGCCTAAGAAATGCAGTAGTGA 57.448 40.909 0.42 0.00 0.00 3.41
1532 1579 4.761739 CAGTCATTGTTACCATGTGGACTT 59.238 41.667 5.96 0.00 38.94 3.01
1545 1592 7.452880 AATACATAGCAACACAGTCATTGTT 57.547 32.000 0.00 0.00 38.16 2.83
1546 1593 8.737168 ATAATACATAGCAACACAGTCATTGT 57.263 30.769 0.00 0.00 41.94 2.71
1665 1734 1.617850 TGGTGGCAAATTCATGTGACC 59.382 47.619 0.00 0.00 0.00 4.02
1683 1752 3.313690 GCGGTTATTTGGAAGTGTTTGG 58.686 45.455 0.00 0.00 0.00 3.28
1901 2010 3.550820 TCTAGCAAGTTGCCAAGTTGAA 58.449 40.909 25.32 12.96 46.52 2.69
1922 2220 8.474025 CAGGAACAGAGAAATGTATCTAGTTCT 58.526 37.037 15.94 0.00 40.63 3.01
1976 2275 2.715046 TGTGAAGATGGAGGTGAATGC 58.285 47.619 0.00 0.00 0.00 3.56
2113 2413 1.000486 CACGAGGAAGAGGAGGGGA 60.000 63.158 0.00 0.00 0.00 4.81
2198 2498 2.986979 TGGGTCGTGACGCTGCTA 60.987 61.111 16.55 0.00 43.67 3.49
2237 2537 2.356135 CTCCTGGACAACATTAACCGG 58.644 52.381 0.00 0.00 0.00 5.28
2243 2543 0.773644 ACTGGCTCCTGGACAACATT 59.226 50.000 0.00 0.00 29.31 2.71
2253 2553 3.322466 CGGGTCCAACTGGCTCCT 61.322 66.667 8.82 0.00 34.44 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.