>input_sequence_83259
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-----------------------------------------------------------------------------ATG
GCCACCTCCGCCGCCGCCGCCGCCTCGTCACCTCCCCCCGACCAACCTCTCGCGAACAAGGCGGTCCGCGTGGTGGTCAA
GGGCCGGGTCCAGGGCGTGGGCTTCCGCGACTGGACGGCCGAGACGGCGGAGTCCCTCGGCCTCGCCGGCTGGGTCCGCA
ACAACCGCCGCGACGGCACCGTGGAGGCCCTCCTCTCCGGAGACCCTGCCAAGGTCGACGAGATGGTCACCCGCCGCCTC
CCCGTCGGCCCTCCTGCCGCCGCGGTCACCGCCGTCGTCACATCCCCAGCCGACCACATCCACCCCTCCCTCGGCTTCGA
AATCAAGCTCACCGTCTGA-------------------------------------------------------------
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>chr7B_1_TraesCS7B01G113800
TTCATACTAGCAAGATGCCCGTGCGTTGCACGGAACATCAATATGCATTTGTATGAGTAGTTTATCTTGTGAGAGAAAAT
GATGAACGAGGGAAGGCCATATATGCAAATGTGGAGAGGGGTGTGGGTATCTTTTTGCAAAATTGCCATACTTTCCTTCC
TATCCGTTAGATATAAATTAGACGGTCTATATTGCAGGATGGCAGGCACACCATCATCAGCAACTCTGTTTTTTATAAGA
GTAGAGACTAGTTTTATAAAATATTCACAAAAATGTAAAAATAATGATTGTGCAGTTTTTTAAAATGATTATATTGTCCA
AA-AAAATGGTGTATCTGAAAAATGTTCAGCACATATTGA-AAACTATTCCATCTGTCTCAAAATGTAAGACATTTTTTT
ACAACTGAGATTGATGCAGTATATTCAAAACATGTAGTTCTAAAATTTGTTAATTACGTGTTTGAAAAATATTCAACATG
TATAAATAAATGCTTCATGTATACTAAAAATGCTACAATGTGTGCTGAAAAAGTATATATGTGATAAAGAAGGAAATGAA
AAAA--GGGAATAAAAATGTTATTACATGTCCAAAAATTGTTTGCGTGATAAAAATAAAGTTTCCTACCATTCAGAAAAT
GTACGTGGCATTTTTG-AAAAATGTCCAGGCATTCCAAAAAATATTTGTGACATTTGA--AAAAAATACAATGTAAAAAT
TTATTT-TTTAGTTTTAAAAAGGCGCCATTAAAAATGTTCTTTAGGGTGATCTAAGAGATATCACTTGGTTAGTT-----
-----------------------GGTTAGCTGCTTCCGATCAAATGTCAAAAATTGCAACCCTTTTCCCAAAGCTTTTGG
GCCGAAAGCTACTTCGACTTTAGAGGCCCACGAGCACAAAGATTCCTCCGCCCCC-AGTTGTCCCACCTGTCACGTCTCT
AATTTCTCAACAACAAAAAAACCCTGTCACGTCTCTATCGCCGCCTGCCGCTGCCTCGCCCCATCCTCGCCGCCGCCATG
GCCACCTCCGCCGCCGCCGCCGCCTCGTCACCTCCCCCCGACCAACCTCTCGCGAACAAGGCGGTCCGCGTGGTGGTCAA
GGGCCGGGTCCAGGGCGTGGGCTTCCGCGACTGGACGGCCGAGACGGCGGAGTCCCTCGGCCTCGCCGGCTGGGTCCGCA
ACAACCGCCGCGACGGCACCGTGGAGGCCCTCCTCTCCGGAGACCCTGCCAAGGTCGACGAGATGGTCACCCGCCGCCTC
CCCGTCGGCCCTCCTGCCGCCGCGGTCACCGCCGTCGTCACATCCCCAGCCGACCACATCCACCCCTCCCTCGGCTTCGA
AATCAAGCTCACCGTCTGATTGGGTAACCCTGGGCGTCCGATCGACCAGAGCTAGCGGGTTCTGCACGACTC-TGCTCAA
CTGCCGATGGTTAGTACCACCAGACCTAATTCCATATCTGACCT--------GCAGCATCTTCACTACTGCATTTCTTAG
GCAAACTGTTATAAGAGAACTATTGTGGTCAATGTGCACAACAATGGCTTTATTCGATAAGTCCACATGGTAACAAT---
-------------------GACTGTGTTGCTATGTATTATATCTCGGTATAGTTCTTGAATAATATAGCACTGCTGAGTT
GTGATTTAAGAGCTATGGTGCCAAGATCAGATTGTTTCTGTCATTGACAAATTGGTCACATGAATTTGCCACCAAACACT
TCCAAATAACCGCGATCAGCTATGAACATGACGAGCAGAGTTACACATTCGTAGAAACCTGATATTAGCT----------
------------------------------CTCCATACAAACCTTTGAATGGCATATACATTCACCTCCATCTTCGCAGA
TCTGCCTACCTTCTTCTAGCTAGCTAGGCCAGTGCCTGCATATAGCCATATACTGATATACATCACACTAAATTGCATAG
TGTTACTCGT----------------------------------------------------------------------
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---------------------------------------TCAACTTGGCAACTTGCTAGAGAACTAGATACATTTCTCTG
TTCCTGATC-CCATACAAACCCTGAATGACATATGCATTCACCTCCATCTTCACATATTTGTCTACCTAGCTAGCTAGGC
CAGTA-CCTGCATGTAATGATATACATCACACTACATTGCATAGTGTTACTCGCTCAAACCTTCTGTTGCAGCTCCACCA
TGGACTTGTCCTTCCCCTCCTCTTCCTCGTGGTGTTGCACGGGCTTGTACGTGTATTGTCTAGCACATATCAGATAGTAC
ACCAGGTTCATGACCTGTAGCAGCGTCACGACCCAGTAGAAGTAGTCCAACTTGCCCCGGTTAATGTTGTCCAGGAGCCA
GTTGGACCCGTCGGGACCGGCACTCCACCGGTGAACGATGGTGATCAGCAGTGTGCTCACGTAGCTGCCCAGCGAGATGG
A
>chr7A_247
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------ACTAGTTTTACGAAATATTCACACAAATGTAAAAATAATGATTGTGCAGTTTAAAAAAATGATTGTATCGTCCA
AAAAAAATGGTGTATCTGAAAAATGTTCAGCACATATTAA-AAA-TATTTCATCTGTCTCAAAATGTAAGACATTTTTTT
GCAACTAAGATAGATGCAGTATATTCAAAACATGTAGTTCTAAAATTTGTTAATTATGTATTTGAAAAATATTCAACATG
TATAAATAAATGCTTCATGTATACTAAAAATGCTACAATGTGTGCTGAAAAAGTATATATGTATTAAAGAAGGAAATGAA
AAAAACGGGAATAAAAATGTTATTACATGTCCAAAAATTGTTTGCGTGATAAAAATAATGTTTCCTACCATCCAAAAAAT
GTACGTGACA-TTTTTTAAAAATGTTCAGGCATTCCAAAAAATGTTTGTGACATTTGAAGAAAAATTACAATGTAAAAAA
ATATTTGTTTAGTTTTAAAAATTTGCGATTAAAAATGTTCTTTAGGGTGATCTAAGAGATATCACTTGGTTAGTTTTTTT
TGAGACACATCACTTGTTTAGTTGGTTAGCTGCTTCCGATCAAATGTCAAAAATTGCAACCCTTTTCCCAAAGCTTTTGG
GCCGAAAGCTACTTCGACTTTAGAGGCCCGACGAACACAAGATTCCTCTGCCCCCCAGTTGTCTCAGCTC----------
--------------------------TCACGTCTCTATCGCCGCCTGCCGCTGCCTCGCCCCTTCCCCGCCGACGCCATG
GCCACCTCCGCCGC---------CTCGTCGCCTTCCCCCGACCAACCTCCCGCGAACAAGGCGGTCCGCGTGGTGGTCAA
GGGCCGGGTCCAGGGCGTGGGCTTCCGCGACTGGACGGCCGAGACGGCGGAGTCCCTCGGCCTCGCCGGCTGGGTCCGCA
ACAACCGCCGCGACGGCACCGTGGAGGCCCTCCTCTCCGGCGACCCTGCCAAGGTCGACGAGATGGTCACCCGCCGCCTC
CCCGTCGGCCCTCCTGCCGCCGCCGTCACCGCCGTCGTCACATCCCCAGCCGACCACATCCACCCCTCCCTCGGCTTCGA
GATCAAGCTCACCGTCTGATTCGGTAACCCC-GGCGTCCGATCGACCACAGCCAGCGGGTTCTGCACGGCTTGTGGTCAA
CTGCCGATGGTTAGTACCGCCA-ACCTAATTCCATATCTGACCT--------GCAGCATCTGCACTACTGCATTTCTTAG
GCAAACTGTTATAAGAGAACTATTGTGGTCAATGTGCACAACAATGGCTTTATTCAACCAGTCCACATGATGGCAATTAG
GATTAAAGGTCATGTCCAAGAA--TGTTGCTATGTATGGTATCTCGGTATAGTTCTTGAATAATATGGCACTGCTGAGTT
GTGATTTAAGAGCTATGGTGCCAAGATGAGATTGTTTCTGTCATTGACAAATTCGTCACATGAATTTGCCATCAAACACT
AGCAAATAACCGCTATCAGCTATGAACATGACGAGCAGAGTTACACATTCGTAGAAACCTGATATTAGCTCAACTTGCTA
GTGAACTAGATACATTTCTCTGTTTCTGATCTCCATAC-AAACCTTGAATGACACATACATTCAGCT-------------
--------CCTTCTTCTAGCTAGCTAGGCCAGTGCCTGCATATAGCCATGTACTGATATACATCGCACTAAATTGCATAG
TGTTACTCA-----------------------------------------------------------------------
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--------------------------------------CTCAACTTGGCAACTTGCTAGTGAACTAGATACATTTGTCTG
TTCCTGATCTCCATACAAACCCTGAATGACATATACATTCACCTCCATCTTCACAGATCTGTCTGCCTAGCTAGTTAGGC
CAGTAACCTGCATATACTGATATACATCACACTACATTGCATAGTGTTACTCGCTCAAACCTTCTGTTGCAGCTCCACCA
TGGACTTGTCCTCCCCCTCCTCTTCCTCGTGGTGTTGCACGGGCTTGTACGTGTATTGTCTAGCACATATCAGATAGTAC
ACCAGGTTCATGACCTGCAGCAGCGTCACGACCCAGTAGAAGTAGTCCAACTTGCCGCGGTTGATGTTGTCCGGGAGCCA
GTTGGATCCGTCGGGACCGGCACTCCACCGGTGAACGATGGTGATCAGCAGTGTGCTCACATAGCTGCCCAGCGAGATGG
A
>chr7D_247
ACTAC---------------------------------------------------------------------------
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-----------TTTTATAAAATGTTGACACAAATGTAAAAAAAATGATTGTGCAG-TTAAAAAAATGATTATATCATCCA
AAAAT--TGGTGTATCTGAAAAATGTTTAGCACATATTAAGAAA-TACTCCATCCGTCTCAAAATGTAAGACTTTTTTGA
C--ACTAAGATAAATGCAGTATATTCAAAACATGTAATTTTAAAATTTGTTAATCATGTATTT-AAAAATATTCAACATG
TATAAATAAATGCTTCATGTATACTAAAAATGCTACAATGTGTGCTGAAAAAGTAAGTGTATATTCAAGT----------
---------------AATGTTATTACATGTCCTAAAATTGTTTACATGATCAAAATAATGTTTCGTACCATTCATAAAAT
GTACGTGACA-TTTTG-AAAAATGTTCAGGCATTCCC-AAAATGTTCGTGACATTTGAAAAAAAA-TACAATGTAAAAAA
TTATTTGTGTAGTTTTAAAAAGGAGCCATTAAAAAAGTTCTTTAGGGTGATCTAAGAGATATCACTT-------------
-----------------------GGTTAGCTGCTTCCGATCAAATGTCAAAAGTTGGAACCCTTTTCCCAAAGCTTTTGG
GCGAAAAGCTACTTCGACTTTAGAGGCCCGACGAACACAAGATTCCTCCGCCCCC-AGTTGTCCCACCTG----------
--------------------------TCACGTCTCTATCGCCGCCTACCGCTGCCTCG-CCCTTCCCCGCTGACGCCATG
GCCACCTCCGCCGCTGCCGCCGCCTCGTCTCCTTCCTCCGACCAACCTCCCGCGAACAAGGCGGTCCACGTGGTGGTCAA
GGGCCGGGTCCAGGGCGTGGGCTTCCGCGACTGGACGGCCGAGACGGCGGAGTCCCTCGGCCTCGCCGGCTGGGTCCGCA
ACAACCGCCGCGACGGCACCGTGGAGGCCCTCCTCTCCGGCGACCCTGCCAAGGTCGACGAGATGGTCATCCGCCGCCTC
CCCGTCGGCCCTCCTGCCGCCGCCGTCACCGCCGTCGTCACATCCCCAGCCGACCACATCCACCCCTCCCTCGGCTTCGA
AATCAAGCTCACCGTCTGATCGGGTGACCCC-GGCGTTCGATCGACCACAGCCAGCGGGTTCTGCACGGCTTGTGCTCAA
CTGCCGATGGTTAGTGCCACCA-ACCTAATTCCATATCTGACCTCTTGTTCTGCAGCATCTGCACTACTGCATTTCTTAG
GCAAACTGTTATAAGAGAACTATTGTGGTCAATGCGCACAACAATGGCTTTATTCGATCAGTCCACATGGTGGCAATTAG
GATCAAAGGTCATGTCCAAGACTGTGTTGCTATGTATTGTA-CTCGGTATAGTTCTTGAATAATATAGCACTGCTGAATT
TTGA-TTTAGAACTATGGTACCAAGATCAAATTGTTTCGGTCATTGACAAATTCACGACATAAATTTACCATCAAACACT
TCC-AATAACCGCGATCAGCTACGAACATAACGAGCAGAGTTACACATTCGTAGAAACCTGATATTAGCTCAACTTACTA
GTGAACTAGATACATTTCTCTGTTCCTGATCTCCATATAAACCTTTGAATGGCATATACATTCACCTCCATCTTCGCAGA
TCTGTCTACCTTCTTCTAGCTAGCTAGGCCAGTGCCTGCATATAGCCACATACTGATATACATCACACTAAATTGCATAG
TGTTACTCGCTCAACTTGGCAACTTGCTAGTGAACTAGATACATTTCTCTGTTCCTGATCTCCATACGAACCTTGAATGA
CTTAATACATTCACCTCCATCTTTGCAGATCTGTCTACCTTCTTCTAGCTAGCTAGGCCAGTGCCTGCATATAGCCATAT
ACTGATATACATCACACTACATTGCATAGTGTTACTCGCTCAACTTGGCAACTTGCTAGTGAACTAGATACATTTCTCTG
TTCCTGATCTCCATACAAACCCTGAATGACATATACATTCACCACCATCTTCACAGATCTGTCTACCTAGCTAGCTAGGC
CAGT-ACCTGCATATACTGATATCCATCACACTACATTGCATAGTGTTACTCGCTCAAACCTTCTGTTGCAGCTCCACCA
TGGACTTGTCCTCCCCCTCCTCTTCCTTGTAGTGCTGCACGGGCTTGTACGTGTACTGCCTAGCACATATCAGGTAGTAC
ACCAGGTTCATGACCTGCAGAAGTGTCACGACCCAGTAGAAGTAGTCCAGCTTGCCGCGGTTGATGTTGTCCGGGAGCCA
GTTGGACCCGTCTGGGCCAGCGCTCCACCGGTGCACGATGGTGATGAGCAGCGTGCTGACGTAGCTGCCCAGGGAGATGG
A
>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS-----------------------S----------------------------SSS-------------S-----
--------------------------------------S-----S-----------------------------------
S-----S----S--------------------------------------------S--S--------------------
--------------------------------------------------------------SS----------------
----------------------------------------------------------S---------------S-----
-------S--S--------------S-----------------S---------------------S-------------S
-----------------------S--------------------------------------------------------
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-----------------------------SSSSSSSSS--------------------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------S---S-----S-------
--------------S--------------S---S---------------S------------------------------
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----------------------------------------S---------------------------------------
-----------------------S--------------------------------------------------------
------------------------------SS----------------S---S---------------S--S--------
----------------------S--------------------------------------S------------------
----------------------------------------------------------S------------SS-------
--------------------------------------S-----------------------------------------
-----------------------------------------------------S-----------------S--------
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----S---------------------------------------------------------------------------
---------S----------------------------------------------------------------------
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-----------------------------------------------------------S--------------------
----------------------------------S--------------------S--S---------------------
-------------S--S---------------------------------------------------------------
------------S-------------------------------------------------------------------
-----------------S--------------------------------------S-----S---------S-------
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>forward_132
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--------------------------------GGAGAGGGGTGTGGGTATCT----------------------------
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>reverse_1429
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--------------------------------------------------------------------ACTCTGCTCAAC
TGCCGATG------------------------------------------------------------------------
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