Multiple sequence alignment - TraesCS7B01G095800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G095800 chr7B 100.000 2582 0 0 1 2582 110354281 110351700 0.000000e+00 4769.0
1 TraesCS7B01G095800 chr7B 81.250 80 13 2 1331 1408 698857403 698857324 2.140000e-06 63.9
2 TraesCS7B01G095800 chr7D 90.896 2164 97 45 485 2582 147580384 147578255 0.000000e+00 2813.0
3 TraesCS7B01G095800 chr7D 93.886 229 9 3 1237 1461 634158820 634159047 8.850000e-90 340.0
4 TraesCS7B01G095800 chr7D 83.740 123 4 6 2253 2373 182813670 182813778 4.550000e-18 102.0
5 TraesCS7B01G095800 chr7A 90.390 2154 94 47 478 2562 148833225 148831116 0.000000e+00 2726.0
6 TraesCS7B01G095800 chr2D 90.496 242 17 3 2303 2543 140491239 140491475 5.360000e-82 315.0
7 TraesCS7B01G095800 chr6A 83.436 326 43 9 1208 1529 543931346 543931664 2.510000e-75 292.0
8 TraesCS7B01G095800 chr6B 82.927 328 43 11 1208 1530 594439617 594439936 1.510000e-72 283.0
9 TraesCS7B01G095800 chr6D 82.972 323 44 10 1208 1529 397629794 397630106 5.440000e-72 281.0
10 TraesCS7B01G095800 chr6D 92.308 78 3 3 2294 2369 157316769 157316693 9.770000e-20 108.0
11 TraesCS7B01G095800 chr6D 92.157 51 4 0 1358 1408 102261455 102261505 3.560000e-09 73.1
12 TraesCS7B01G095800 chr4A 83.333 78 6 6 1331 1402 661973870 661973946 5.960000e-07 65.8
13 TraesCS7B01G095800 chr4B 97.059 34 1 0 2266 2299 14508671 14508704 9.980000e-05 58.4
14 TraesCS7B01G095800 chr4B 97.143 35 0 1 2266 2299 14509541 14509575 9.980000e-05 58.4
15 TraesCS7B01G095800 chr4B 97.143 35 0 1 2266 2299 14511175 14511209 9.980000e-05 58.4
16 TraesCS7B01G095800 chr4B 97.143 35 0 1 2266 2299 14512393 14512427 9.980000e-05 58.4
17 TraesCS7B01G095800 chr4B 97.143 35 0 1 2266 2299 14512621 14512655 9.980000e-05 58.4
18 TraesCS7B01G095800 chr4B 97.143 35 0 1 2266 2299 14513502 14513536 9.980000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G095800 chr7B 110351700 110354281 2581 True 4769 4769 100.000 1 2582 1 chr7B.!!$R1 2581
1 TraesCS7B01G095800 chr7D 147578255 147580384 2129 True 2813 2813 90.896 485 2582 1 chr7D.!!$R1 2097
2 TraesCS7B01G095800 chr7A 148831116 148833225 2109 True 2726 2726 90.390 478 2562 1 chr7A.!!$R1 2084

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.10409 ACCCTGGGTAAGTGGGACTT 60.104 55.0 18.99 0.0 43.47 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 2108 1.67897 GCCACCCTAAGTTGCTGGG 60.679 63.158 8.35 8.35 46.07 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.445699 GCACCAGGGATGTCGATC 57.554 61.111 0.00 0.00 0.00 3.69
18 19 1.227674 GCACCAGGGATGTCGATCC 60.228 63.158 0.00 0.00 46.99 3.36
24 25 3.912907 GGATGTCGATCCCCGCGT 61.913 66.667 4.92 0.00 42.42 6.01
25 26 2.354773 GATGTCGATCCCCGCGTC 60.355 66.667 4.92 0.00 38.37 5.19
26 27 3.843117 GATGTCGATCCCCGCGTCC 62.843 68.421 4.92 0.00 38.37 4.79
28 29 4.267503 GTCGATCCCCGCGTCCTC 62.268 72.222 4.92 0.00 38.37 3.71
29 30 4.501285 TCGATCCCCGCGTCCTCT 62.501 66.667 4.92 0.00 38.37 3.69
30 31 2.593725 CGATCCCCGCGTCCTCTA 60.594 66.667 4.92 0.00 0.00 2.43
31 32 2.618219 CGATCCCCGCGTCCTCTAG 61.618 68.421 4.92 0.00 0.00 2.43
32 33 2.913060 ATCCCCGCGTCCTCTAGC 60.913 66.667 4.92 0.00 0.00 3.42
33 34 3.733507 ATCCCCGCGTCCTCTAGCA 62.734 63.158 4.92 0.00 0.00 3.49
34 35 3.905678 CCCCGCGTCCTCTAGCAG 61.906 72.222 4.92 0.00 0.00 4.24
35 36 3.141488 CCCGCGTCCTCTAGCAGT 61.141 66.667 4.92 0.00 0.00 4.40
36 37 2.103143 CCGCGTCCTCTAGCAGTG 59.897 66.667 4.92 0.00 0.00 3.66
37 38 2.407428 CCGCGTCCTCTAGCAGTGA 61.407 63.158 4.92 0.00 0.00 3.41
38 39 1.226435 CGCGTCCTCTAGCAGTGAC 60.226 63.158 0.00 0.00 0.00 3.67
39 40 1.649390 CGCGTCCTCTAGCAGTGACT 61.649 60.000 0.00 0.00 0.00 3.41
40 41 0.179150 GCGTCCTCTAGCAGTGACTG 60.179 60.000 8.52 8.52 34.12 3.51
41 42 1.169577 CGTCCTCTAGCAGTGACTGT 58.830 55.000 14.82 3.82 33.43 3.55
42 43 1.135546 CGTCCTCTAGCAGTGACTGTG 60.136 57.143 14.82 5.36 33.43 3.66
43 44 1.203523 GTCCTCTAGCAGTGACTGTGG 59.796 57.143 14.82 8.96 33.43 4.17
44 45 1.075536 TCCTCTAGCAGTGACTGTGGA 59.924 52.381 14.82 10.95 33.43 4.02
45 46 1.476085 CCTCTAGCAGTGACTGTGGAG 59.524 57.143 14.82 16.61 33.43 3.86
46 47 1.476085 CTCTAGCAGTGACTGTGGAGG 59.524 57.143 14.82 1.25 33.43 4.30
47 48 1.203063 TCTAGCAGTGACTGTGGAGGT 60.203 52.381 14.82 0.00 33.43 3.85
48 49 2.041216 TCTAGCAGTGACTGTGGAGGTA 59.959 50.000 14.82 0.00 33.43 3.08
49 50 1.261480 AGCAGTGACTGTGGAGGTAG 58.739 55.000 14.82 0.00 33.43 3.18
50 51 0.390472 GCAGTGACTGTGGAGGTAGC 60.390 60.000 14.82 0.00 33.43 3.58
51 52 0.109086 CAGTGACTGTGGAGGTAGCG 60.109 60.000 4.01 0.00 0.00 4.26
52 53 1.215647 GTGACTGTGGAGGTAGCGG 59.784 63.158 0.00 0.00 0.00 5.52
53 54 1.228769 TGACTGTGGAGGTAGCGGT 60.229 57.895 0.00 0.00 0.00 5.68
54 55 0.830444 TGACTGTGGAGGTAGCGGTT 60.830 55.000 0.00 0.00 0.00 4.44
55 56 0.389948 GACTGTGGAGGTAGCGGTTG 60.390 60.000 0.00 0.00 0.00 3.77
56 57 1.119574 ACTGTGGAGGTAGCGGTTGT 61.120 55.000 0.00 0.00 0.00 3.32
57 58 0.892755 CTGTGGAGGTAGCGGTTGTA 59.107 55.000 0.00 0.00 0.00 2.41
58 59 1.480954 CTGTGGAGGTAGCGGTTGTAT 59.519 52.381 0.00 0.00 0.00 2.29
59 60 2.691526 CTGTGGAGGTAGCGGTTGTATA 59.308 50.000 0.00 0.00 0.00 1.47
60 61 2.428171 TGTGGAGGTAGCGGTTGTATAC 59.572 50.000 0.00 0.00 0.00 1.47
61 62 2.034124 TGGAGGTAGCGGTTGTATACC 58.966 52.381 0.00 0.00 44.03 2.73
71 72 2.097036 GGTTGTATACCAAGGGTTGCC 58.903 52.381 0.00 0.00 46.92 4.52
72 73 2.555670 GGTTGTATACCAAGGGTTGCCA 60.556 50.000 0.00 0.00 46.92 4.92
73 74 2.752903 GTTGTATACCAAGGGTTGCCAG 59.247 50.000 0.00 0.00 37.09 4.85
74 75 1.340600 TGTATACCAAGGGTTGCCAGC 60.341 52.381 0.00 0.00 37.09 4.85
75 76 0.107410 TATACCAAGGGTTGCCAGCG 60.107 55.000 0.00 0.00 37.09 5.18
76 77 1.847798 ATACCAAGGGTTGCCAGCGA 61.848 55.000 0.00 0.00 37.09 4.93
77 78 2.741486 TACCAAGGGTTGCCAGCGAC 62.741 60.000 1.08 1.08 37.09 5.19
88 89 3.388841 CAGCGACCCTGGGTAAGT 58.611 61.111 20.61 2.58 35.25 2.24
89 90 1.079127 CAGCGACCCTGGGTAAGTG 60.079 63.158 20.61 12.18 35.25 3.16
90 91 2.267961 GCGACCCTGGGTAAGTGG 59.732 66.667 20.61 7.15 35.25 4.00
91 92 2.987125 CGACCCTGGGTAAGTGGG 59.013 66.667 20.61 0.21 46.07 4.61
92 93 1.611261 CGACCCTGGGTAAGTGGGA 60.611 63.158 20.61 0.00 43.47 4.37
93 94 1.896122 CGACCCTGGGTAAGTGGGAC 61.896 65.000 20.61 2.29 43.47 4.46
94 95 0.546988 GACCCTGGGTAAGTGGGACT 60.547 60.000 20.61 0.00 43.47 3.85
95 96 0.104090 ACCCTGGGTAAGTGGGACTT 60.104 55.000 18.99 0.00 43.47 3.01
96 97 0.328258 CCCTGGGTAAGTGGGACTTG 59.672 60.000 3.97 0.00 43.47 3.16
97 98 0.322546 CCTGGGTAAGTGGGACTTGC 60.323 60.000 0.00 0.00 39.11 4.01
98 99 0.400213 CTGGGTAAGTGGGACTTGCA 59.600 55.000 6.85 0.00 41.68 4.08
99 100 0.109723 TGGGTAAGTGGGACTTGCAC 59.890 55.000 6.85 3.76 43.30 4.57
100 101 0.400594 GGGTAAGTGGGACTTGCACT 59.599 55.000 6.85 0.00 40.43 4.40
101 102 1.626825 GGGTAAGTGGGACTTGCACTA 59.373 52.381 6.85 0.00 40.43 2.74
102 103 2.614734 GGGTAAGTGGGACTTGCACTAC 60.615 54.545 6.85 0.00 40.43 2.73
103 104 2.302157 GGTAAGTGGGACTTGCACTACT 59.698 50.000 6.85 0.00 41.68 2.57
104 105 2.841442 AAGTGGGACTTGCACTACTC 57.159 50.000 0.00 0.00 37.00 2.59
105 106 0.977395 AGTGGGACTTGCACTACTCC 59.023 55.000 0.00 0.00 0.00 3.85
106 107 0.389948 GTGGGACTTGCACTACTCCG 60.390 60.000 0.00 0.00 0.00 4.63
107 108 0.830444 TGGGACTTGCACTACTCCGT 60.830 55.000 0.00 0.00 0.00 4.69
108 109 0.108756 GGGACTTGCACTACTCCGTC 60.109 60.000 0.00 0.00 0.00 4.79
109 110 0.456312 GGACTTGCACTACTCCGTCG 60.456 60.000 0.00 0.00 0.00 5.12
110 111 0.520404 GACTTGCACTACTCCGTCGA 59.480 55.000 0.00 0.00 0.00 4.20
111 112 0.240411 ACTTGCACTACTCCGTCGAC 59.760 55.000 5.18 5.18 0.00 4.20
112 113 0.793478 CTTGCACTACTCCGTCGACG 60.793 60.000 30.33 30.33 39.44 5.12
131 132 1.491563 GCAAGACGTAGCCACAACG 59.508 57.895 0.00 0.00 45.64 4.10
132 133 1.491563 CAAGACGTAGCCACAACGC 59.508 57.895 0.00 0.00 44.04 4.84
133 134 1.666872 AAGACGTAGCCACAACGCC 60.667 57.895 0.00 0.00 44.04 5.68
134 135 3.475774 GACGTAGCCACAACGCCG 61.476 66.667 0.00 0.00 44.04 6.46
135 136 3.902162 GACGTAGCCACAACGCCGA 62.902 63.158 0.00 0.00 44.04 5.54
136 137 3.475774 CGTAGCCACAACGCCGAC 61.476 66.667 0.00 0.00 33.04 4.79
137 138 2.356553 GTAGCCACAACGCCGACA 60.357 61.111 0.00 0.00 0.00 4.35
138 139 1.957186 GTAGCCACAACGCCGACAA 60.957 57.895 0.00 0.00 0.00 3.18
139 140 1.227586 TAGCCACAACGCCGACAAA 60.228 52.632 0.00 0.00 0.00 2.83
140 141 0.814410 TAGCCACAACGCCGACAAAA 60.814 50.000 0.00 0.00 0.00 2.44
141 142 1.007849 GCCACAACGCCGACAAAAT 60.008 52.632 0.00 0.00 0.00 1.82
142 143 1.274798 GCCACAACGCCGACAAAATG 61.275 55.000 0.00 0.00 0.00 2.32
143 144 0.662970 CCACAACGCCGACAAAATGG 60.663 55.000 0.00 0.00 0.00 3.16
144 145 0.662970 CACAACGCCGACAAAATGGG 60.663 55.000 0.00 0.00 0.00 4.00
148 149 2.178273 GCCGACAAAATGGGCGTC 59.822 61.111 0.00 0.00 42.99 5.19
150 151 2.478746 CGACAAAATGGGCGTCGG 59.521 61.111 3.37 0.00 46.59 4.79
151 152 2.322081 CGACAAAATGGGCGTCGGT 61.322 57.895 3.37 0.00 46.59 4.69
152 153 1.209127 GACAAAATGGGCGTCGGTG 59.791 57.895 0.00 0.00 0.00 4.94
153 154 2.195123 GACAAAATGGGCGTCGGTGG 62.195 60.000 0.00 0.00 0.00 4.61
154 155 1.969064 CAAAATGGGCGTCGGTGGA 60.969 57.895 0.00 0.00 0.00 4.02
155 156 1.001393 AAAATGGGCGTCGGTGGAT 60.001 52.632 0.00 0.00 0.00 3.41
156 157 1.312371 AAAATGGGCGTCGGTGGATG 61.312 55.000 0.00 0.00 0.00 3.51
157 158 2.478335 AAATGGGCGTCGGTGGATGT 62.478 55.000 0.00 0.00 0.00 3.06
158 159 3.680620 ATGGGCGTCGGTGGATGTG 62.681 63.158 0.00 0.00 0.00 3.21
162 163 2.815211 CGTCGGTGGATGTGGCAG 60.815 66.667 0.00 0.00 0.00 4.85
163 164 2.347490 GTCGGTGGATGTGGCAGT 59.653 61.111 0.00 0.00 0.00 4.40
164 165 2.034879 GTCGGTGGATGTGGCAGTG 61.035 63.158 0.00 0.00 0.00 3.66
165 166 2.747460 CGGTGGATGTGGCAGTGG 60.747 66.667 0.00 0.00 0.00 4.00
166 167 2.436109 GGTGGATGTGGCAGTGGT 59.564 61.111 0.00 0.00 0.00 4.16
167 168 1.973281 GGTGGATGTGGCAGTGGTG 60.973 63.158 0.00 0.00 0.00 4.17
168 169 1.073025 GTGGATGTGGCAGTGGTGA 59.927 57.895 0.00 0.00 0.00 4.02
169 170 0.537143 GTGGATGTGGCAGTGGTGAA 60.537 55.000 0.00 0.00 0.00 3.18
170 171 0.405198 TGGATGTGGCAGTGGTGAAT 59.595 50.000 0.00 0.00 0.00 2.57
171 172 1.632920 TGGATGTGGCAGTGGTGAATA 59.367 47.619 0.00 0.00 0.00 1.75
172 173 2.292267 GGATGTGGCAGTGGTGAATAG 58.708 52.381 0.00 0.00 0.00 1.73
173 174 2.292267 GATGTGGCAGTGGTGAATAGG 58.708 52.381 0.00 0.00 0.00 2.57
174 175 1.064003 TGTGGCAGTGGTGAATAGGT 58.936 50.000 0.00 0.00 0.00 3.08
175 176 1.423541 TGTGGCAGTGGTGAATAGGTT 59.576 47.619 0.00 0.00 0.00 3.50
176 177 1.812571 GTGGCAGTGGTGAATAGGTTG 59.187 52.381 0.00 0.00 0.00 3.77
177 178 1.271871 TGGCAGTGGTGAATAGGTTGG 60.272 52.381 0.00 0.00 0.00 3.77
178 179 1.004277 GGCAGTGGTGAATAGGTTGGA 59.996 52.381 0.00 0.00 0.00 3.53
179 180 2.554344 GGCAGTGGTGAATAGGTTGGAA 60.554 50.000 0.00 0.00 0.00 3.53
180 181 2.749621 GCAGTGGTGAATAGGTTGGAAG 59.250 50.000 0.00 0.00 0.00 3.46
181 182 2.749621 CAGTGGTGAATAGGTTGGAAGC 59.250 50.000 0.00 0.00 0.00 3.86
182 183 2.644798 AGTGGTGAATAGGTTGGAAGCT 59.355 45.455 0.00 0.00 40.36 3.74
183 184 2.749621 GTGGTGAATAGGTTGGAAGCTG 59.250 50.000 1.30 0.00 37.33 4.24
184 185 2.290896 TGGTGAATAGGTTGGAAGCTGG 60.291 50.000 1.30 0.00 37.33 4.85
185 186 2.026262 GGTGAATAGGTTGGAAGCTGGA 60.026 50.000 1.30 0.00 37.33 3.86
186 187 3.372025 GGTGAATAGGTTGGAAGCTGGAT 60.372 47.826 1.30 0.00 37.33 3.41
187 188 4.141482 GGTGAATAGGTTGGAAGCTGGATA 60.141 45.833 1.30 0.00 37.33 2.59
188 189 5.059833 GTGAATAGGTTGGAAGCTGGATAG 58.940 45.833 1.30 0.00 37.33 2.08
189 190 4.721776 TGAATAGGTTGGAAGCTGGATAGT 59.278 41.667 1.30 0.00 37.33 2.12
190 191 4.696479 ATAGGTTGGAAGCTGGATAGTG 57.304 45.455 1.30 0.00 37.33 2.74
191 192 1.561542 AGGTTGGAAGCTGGATAGTGG 59.438 52.381 0.00 0.00 35.05 4.00
192 193 1.383523 GTTGGAAGCTGGATAGTGGC 58.616 55.000 0.00 0.00 0.00 5.01
193 194 0.107703 TTGGAAGCTGGATAGTGGCG 60.108 55.000 0.00 0.00 0.00 5.69
194 195 0.975556 TGGAAGCTGGATAGTGGCGA 60.976 55.000 0.00 0.00 0.00 5.54
195 196 0.530870 GGAAGCTGGATAGTGGCGAC 60.531 60.000 0.00 0.00 0.00 5.19
196 197 0.872021 GAAGCTGGATAGTGGCGACG 60.872 60.000 0.00 0.00 0.00 5.12
197 198 1.320344 AAGCTGGATAGTGGCGACGA 61.320 55.000 0.00 0.00 0.00 4.20
198 199 1.299468 GCTGGATAGTGGCGACGAG 60.299 63.158 0.00 0.00 0.00 4.18
199 200 1.360551 CTGGATAGTGGCGACGAGG 59.639 63.158 0.00 0.00 0.00 4.63
200 201 2.076622 CTGGATAGTGGCGACGAGGG 62.077 65.000 0.00 0.00 0.00 4.30
201 202 2.027751 GATAGTGGCGACGAGGGC 59.972 66.667 0.00 0.00 0.00 5.19
202 203 3.825833 GATAGTGGCGACGAGGGCG 62.826 68.421 0.00 0.00 44.79 6.13
207 208 4.856607 GGCGACGAGGGCGAAGAG 62.857 72.222 0.00 0.00 41.64 2.85
208 209 4.856607 GCGACGAGGGCGAAGAGG 62.857 72.222 0.00 0.00 41.64 3.69
209 210 4.194720 CGACGAGGGCGAAGAGGG 62.195 72.222 0.00 0.00 41.64 4.30
210 211 3.069318 GACGAGGGCGAAGAGGGT 61.069 66.667 0.00 0.00 41.64 4.34
211 212 1.751927 GACGAGGGCGAAGAGGGTA 60.752 63.158 0.00 0.00 41.64 3.69
212 213 1.726533 GACGAGGGCGAAGAGGGTAG 61.727 65.000 0.00 0.00 41.64 3.18
213 214 2.491022 CGAGGGCGAAGAGGGTAGG 61.491 68.421 0.00 0.00 40.82 3.18
214 215 2.041819 AGGGCGAAGAGGGTAGGG 60.042 66.667 0.00 0.00 0.00 3.53
215 216 2.365237 GGGCGAAGAGGGTAGGGT 60.365 66.667 0.00 0.00 0.00 4.34
216 217 2.732619 GGGCGAAGAGGGTAGGGTG 61.733 68.421 0.00 0.00 0.00 4.61
217 218 1.988406 GGCGAAGAGGGTAGGGTGT 60.988 63.158 0.00 0.00 0.00 4.16
218 219 1.551019 GGCGAAGAGGGTAGGGTGTT 61.551 60.000 0.00 0.00 0.00 3.32
219 220 0.108281 GCGAAGAGGGTAGGGTGTTC 60.108 60.000 0.00 0.00 0.00 3.18
220 221 0.172803 CGAAGAGGGTAGGGTGTTCG 59.827 60.000 0.00 0.00 33.79 3.95
221 222 1.264295 GAAGAGGGTAGGGTGTTCGT 58.736 55.000 0.00 0.00 0.00 3.85
222 223 0.974383 AAGAGGGTAGGGTGTTCGTG 59.026 55.000 0.00 0.00 0.00 4.35
223 224 0.903454 AGAGGGTAGGGTGTTCGTGG 60.903 60.000 0.00 0.00 0.00 4.94
224 225 1.896122 GAGGGTAGGGTGTTCGTGGG 61.896 65.000 0.00 0.00 0.00 4.61
225 226 2.666812 GGTAGGGTGTTCGTGGGG 59.333 66.667 0.00 0.00 0.00 4.96
226 227 2.219164 GGTAGGGTGTTCGTGGGGT 61.219 63.158 0.00 0.00 0.00 4.95
227 228 1.004200 GTAGGGTGTTCGTGGGGTG 60.004 63.158 0.00 0.00 0.00 4.61
228 229 1.152290 TAGGGTGTTCGTGGGGTGA 60.152 57.895 0.00 0.00 0.00 4.02
229 230 1.189524 TAGGGTGTTCGTGGGGTGAG 61.190 60.000 0.00 0.00 0.00 3.51
230 231 2.032071 GGTGTTCGTGGGGTGAGG 59.968 66.667 0.00 0.00 0.00 3.86
231 232 2.513259 GGTGTTCGTGGGGTGAGGA 61.513 63.158 0.00 0.00 0.00 3.71
232 233 1.004918 GTGTTCGTGGGGTGAGGAG 60.005 63.158 0.00 0.00 0.00 3.69
233 234 2.214216 TGTTCGTGGGGTGAGGAGG 61.214 63.158 0.00 0.00 0.00 4.30
234 235 2.606519 TTCGTGGGGTGAGGAGGG 60.607 66.667 0.00 0.00 0.00 4.30
235 236 3.477956 TTCGTGGGGTGAGGAGGGT 62.478 63.158 0.00 0.00 0.00 4.34
236 237 3.706373 CGTGGGGTGAGGAGGGTG 61.706 72.222 0.00 0.00 0.00 4.61
237 238 2.203938 GTGGGGTGAGGAGGGTGA 60.204 66.667 0.00 0.00 0.00 4.02
238 239 1.846124 GTGGGGTGAGGAGGGTGAA 60.846 63.158 0.00 0.00 0.00 3.18
239 240 1.163309 TGGGGTGAGGAGGGTGAAT 59.837 57.895 0.00 0.00 0.00 2.57
240 241 1.207488 TGGGGTGAGGAGGGTGAATG 61.207 60.000 0.00 0.00 0.00 2.67
241 242 0.914417 GGGGTGAGGAGGGTGAATGA 60.914 60.000 0.00 0.00 0.00 2.57
242 243 0.253327 GGGTGAGGAGGGTGAATGAC 59.747 60.000 0.00 0.00 0.00 3.06
243 244 0.984230 GGTGAGGAGGGTGAATGACA 59.016 55.000 0.00 0.00 0.00 3.58
244 245 1.351017 GGTGAGGAGGGTGAATGACAA 59.649 52.381 0.00 0.00 0.00 3.18
245 246 2.616510 GGTGAGGAGGGTGAATGACAAG 60.617 54.545 0.00 0.00 0.00 3.16
246 247 2.039084 GTGAGGAGGGTGAATGACAAGT 59.961 50.000 0.00 0.00 0.00 3.16
247 248 2.038952 TGAGGAGGGTGAATGACAAGTG 59.961 50.000 0.00 0.00 0.00 3.16
248 249 2.039084 GAGGAGGGTGAATGACAAGTGT 59.961 50.000 0.00 0.00 0.00 3.55
249 250 2.154462 GGAGGGTGAATGACAAGTGTG 58.846 52.381 0.00 0.00 0.00 3.82
250 251 1.537202 GAGGGTGAATGACAAGTGTGC 59.463 52.381 0.00 0.00 0.00 4.57
251 252 0.238289 GGGTGAATGACAAGTGTGCG 59.762 55.000 0.00 0.00 0.00 5.34
252 253 1.225855 GGTGAATGACAAGTGTGCGA 58.774 50.000 0.00 0.00 0.00 5.10
253 254 1.069906 GGTGAATGACAAGTGTGCGAC 60.070 52.381 0.00 0.00 0.00 5.19
254 255 1.069906 GTGAATGACAAGTGTGCGACC 60.070 52.381 0.00 0.00 0.00 4.79
255 256 0.163788 GAATGACAAGTGTGCGACCG 59.836 55.000 0.00 0.00 0.00 4.79
256 257 0.249699 AATGACAAGTGTGCGACCGA 60.250 50.000 0.00 0.00 0.00 4.69
257 258 0.944311 ATGACAAGTGTGCGACCGAC 60.944 55.000 0.00 0.00 0.00 4.79
258 259 1.590525 GACAAGTGTGCGACCGACA 60.591 57.895 0.00 0.00 0.00 4.35
259 260 1.548973 GACAAGTGTGCGACCGACAG 61.549 60.000 0.00 0.00 0.00 3.51
260 261 2.029073 AAGTGTGCGACCGACAGG 59.971 61.111 0.00 0.00 45.13 4.00
261 262 4.664677 AGTGTGCGACCGACAGGC 62.665 66.667 0.00 0.00 42.76 4.85
262 263 4.961511 GTGTGCGACCGACAGGCA 62.962 66.667 0.00 0.00 42.76 4.75
272 273 4.329545 GACAGGCACGCCAGGGAA 62.330 66.667 11.35 0.00 38.92 3.97
273 274 4.335647 ACAGGCACGCCAGGGAAG 62.336 66.667 11.35 0.00 38.92 3.46
307 308 4.041917 GGTACGTGTCCGCGTGGA 62.042 66.667 15.21 15.21 45.33 4.02
315 316 2.031919 TCCGCGTGGATGCAACTT 59.968 55.556 15.21 0.00 40.17 2.66
316 317 2.032634 TCCGCGTGGATGCAACTTC 61.033 57.895 15.21 0.00 40.17 3.01
317 318 2.324330 CCGCGTGGATGCAACTTCA 61.324 57.895 10.20 0.00 37.49 3.02
318 319 1.133253 CGCGTGGATGCAACTTCAG 59.867 57.895 0.00 0.00 34.15 3.02
319 320 1.503542 GCGTGGATGCAACTTCAGG 59.496 57.895 0.00 0.00 34.15 3.86
320 321 1.503542 CGTGGATGCAACTTCAGGC 59.496 57.895 0.00 0.00 0.00 4.85
321 322 1.885871 GTGGATGCAACTTCAGGCC 59.114 57.895 0.00 0.00 0.00 5.19
322 323 0.895100 GTGGATGCAACTTCAGGCCA 60.895 55.000 5.01 0.00 0.00 5.36
323 324 0.178967 TGGATGCAACTTCAGGCCAA 60.179 50.000 5.01 0.00 0.00 4.52
324 325 0.968405 GGATGCAACTTCAGGCCAAA 59.032 50.000 5.01 0.00 0.00 3.28
325 326 1.551883 GGATGCAACTTCAGGCCAAAT 59.448 47.619 5.01 0.00 0.00 2.32
326 327 2.027837 GGATGCAACTTCAGGCCAAATT 60.028 45.455 5.01 0.00 0.00 1.82
327 328 3.557686 GGATGCAACTTCAGGCCAAATTT 60.558 43.478 5.01 0.00 0.00 1.82
328 329 2.836262 TGCAACTTCAGGCCAAATTTG 58.164 42.857 11.40 11.40 0.00 2.32
329 330 2.433604 TGCAACTTCAGGCCAAATTTGA 59.566 40.909 19.86 6.38 0.00 2.69
330 331 3.118482 TGCAACTTCAGGCCAAATTTGAA 60.118 39.130 19.86 12.73 0.00 2.69
331 332 3.248363 GCAACTTCAGGCCAAATTTGAAC 59.752 43.478 19.86 11.28 0.00 3.18
332 333 4.696455 CAACTTCAGGCCAAATTTGAACT 58.304 39.130 19.86 13.30 0.00 3.01
333 334 5.738783 GCAACTTCAGGCCAAATTTGAACTA 60.739 40.000 19.86 2.77 0.00 2.24
334 335 5.712152 ACTTCAGGCCAAATTTGAACTAG 57.288 39.130 19.86 12.99 0.00 2.57
335 336 4.524328 ACTTCAGGCCAAATTTGAACTAGG 59.476 41.667 19.86 2.65 0.00 3.02
336 337 4.380843 TCAGGCCAAATTTGAACTAGGA 57.619 40.909 19.86 8.43 0.00 2.94
337 338 4.735369 TCAGGCCAAATTTGAACTAGGAA 58.265 39.130 19.86 1.91 0.00 3.36
338 339 5.332743 TCAGGCCAAATTTGAACTAGGAAT 58.667 37.500 19.86 0.00 0.00 3.01
339 340 5.185635 TCAGGCCAAATTTGAACTAGGAATG 59.814 40.000 19.86 4.55 0.00 2.67
340 341 4.467438 AGGCCAAATTTGAACTAGGAATGG 59.533 41.667 19.86 0.00 0.00 3.16
341 342 4.383010 GGCCAAATTTGAACTAGGAATGGG 60.383 45.833 19.86 0.00 0.00 4.00
342 343 4.222810 GCCAAATTTGAACTAGGAATGGGT 59.777 41.667 19.86 0.00 0.00 4.51
343 344 5.624509 GCCAAATTTGAACTAGGAATGGGTC 60.625 44.000 19.86 0.00 0.00 4.46
359 360 2.029964 TCCAAAGGGACGTCGTGC 59.970 61.111 8.56 8.56 38.64 5.34
380 381 3.370231 GCCGCGTTGGGGTGATTT 61.370 61.111 4.92 0.00 37.97 2.17
381 382 2.926420 GCCGCGTTGGGGTGATTTT 61.926 57.895 4.92 0.00 37.97 1.82
382 383 1.663173 CCGCGTTGGGGTGATTTTT 59.337 52.632 4.92 0.00 0.00 1.94
404 405 6.395780 TTTTGTCCCATAAACCCAGATAGA 57.604 37.500 0.00 0.00 0.00 1.98
405 406 5.367945 TTGTCCCATAAACCCAGATAGAC 57.632 43.478 0.00 0.00 0.00 2.59
406 407 3.386726 TGTCCCATAAACCCAGATAGACG 59.613 47.826 0.00 0.00 0.00 4.18
407 408 2.367567 TCCCATAAACCCAGATAGACGC 59.632 50.000 0.00 0.00 0.00 5.19
408 409 2.404215 CCATAAACCCAGATAGACGCG 58.596 52.381 3.53 3.53 0.00 6.01
409 410 2.035449 CCATAAACCCAGATAGACGCGA 59.965 50.000 15.93 0.00 0.00 5.87
410 411 3.491964 CCATAAACCCAGATAGACGCGAA 60.492 47.826 15.93 0.00 0.00 4.70
411 412 2.005971 AAACCCAGATAGACGCGAAC 57.994 50.000 15.93 6.52 0.00 3.95
413 414 1.299165 CCCAGATAGACGCGAACGG 60.299 63.158 15.93 2.62 46.04 4.44
420 421 2.559330 GACGCGAACGGCCAAAAT 59.441 55.556 15.93 0.00 43.48 1.82
421 422 1.795962 GACGCGAACGGCCAAAATG 60.796 57.895 15.93 0.00 43.48 2.32
422 423 2.503809 CGCGAACGGCCAAAATGG 60.504 61.111 0.00 0.00 41.55 3.16
423 424 2.126110 GCGAACGGCCAAAATGGG 60.126 61.111 2.24 0.00 38.19 4.00
424 425 2.926420 GCGAACGGCCAAAATGGGT 61.926 57.895 2.24 0.00 38.19 4.51
425 426 1.211709 CGAACGGCCAAAATGGGTC 59.788 57.895 2.24 0.00 38.19 4.46
426 427 1.589630 GAACGGCCAAAATGGGTCC 59.410 57.895 2.24 0.00 38.19 4.46
427 428 2.207788 GAACGGCCAAAATGGGTCCG 62.208 60.000 2.24 12.14 46.30 4.79
428 429 3.448340 CGGCCAAAATGGGTCCGG 61.448 66.667 2.24 0.00 41.12 5.14
429 430 3.770040 GGCCAAAATGGGTCCGGC 61.770 66.667 0.00 0.00 38.19 6.13
430 431 4.128388 GCCAAAATGGGTCCGGCG 62.128 66.667 0.00 0.00 38.19 6.46
431 432 4.128388 CCAAAATGGGTCCGGCGC 62.128 66.667 0.00 0.00 32.67 6.53
432 433 3.369400 CAAAATGGGTCCGGCGCA 61.369 61.111 10.83 15.69 44.29 6.09
436 437 2.111043 ATGGGTCCGGCGCATTAG 59.889 61.111 18.22 0.00 46.81 1.73
437 438 2.439960 ATGGGTCCGGCGCATTAGA 61.440 57.895 18.22 0.00 46.81 2.10
438 439 1.978455 ATGGGTCCGGCGCATTAGAA 61.978 55.000 18.22 0.00 46.81 2.10
439 440 1.227853 GGGTCCGGCGCATTAGAAT 60.228 57.895 10.83 0.00 0.00 2.40
440 441 0.818040 GGGTCCGGCGCATTAGAATT 60.818 55.000 10.83 0.00 0.00 2.17
441 442 0.586802 GGTCCGGCGCATTAGAATTC 59.413 55.000 10.83 0.00 0.00 2.17
442 443 0.232303 GTCCGGCGCATTAGAATTCG 59.768 55.000 10.83 0.00 0.00 3.34
448 449 3.585748 GCGCATTAGAATTCGCTTACA 57.414 42.857 11.24 0.00 45.28 2.41
449 450 3.935450 GCGCATTAGAATTCGCTTACAA 58.065 40.909 11.24 0.00 45.28 2.41
450 451 3.719352 GCGCATTAGAATTCGCTTACAAC 59.281 43.478 11.24 0.00 45.28 3.32
451 452 4.726591 GCGCATTAGAATTCGCTTACAACA 60.727 41.667 11.24 0.00 45.28 3.33
452 453 5.320723 CGCATTAGAATTCGCTTACAACAA 58.679 37.500 0.00 0.00 0.00 2.83
453 454 5.792962 CGCATTAGAATTCGCTTACAACAAA 59.207 36.000 0.00 0.00 0.00 2.83
454 455 6.468956 CGCATTAGAATTCGCTTACAACAAAT 59.531 34.615 0.00 0.00 0.00 2.32
455 456 7.511965 CGCATTAGAATTCGCTTACAACAAATG 60.512 37.037 0.00 0.00 0.00 2.32
456 457 7.273381 GCATTAGAATTCGCTTACAACAAATGT 59.727 33.333 0.00 0.00 46.36 2.71
457 458 8.788813 CATTAGAATTCGCTTACAACAAATGTC 58.211 33.333 0.00 0.00 42.70 3.06
458 459 5.382303 AGAATTCGCTTACAACAAATGTCG 58.618 37.500 0.00 0.00 42.70 4.35
459 460 4.742438 ATTCGCTTACAACAAATGTCGT 57.258 36.364 0.00 0.00 42.70 4.34
460 461 4.539509 TTCGCTTACAACAAATGTCGTT 57.460 36.364 0.00 0.00 42.70 3.85
462 463 2.400408 CGCTTACAACAAATGTCGTTGC 59.600 45.455 3.07 0.00 46.14 4.17
463 464 3.628017 GCTTACAACAAATGTCGTTGCT 58.372 40.909 3.07 0.00 46.14 3.91
464 465 3.421888 GCTTACAACAAATGTCGTTGCTG 59.578 43.478 3.07 0.00 46.14 4.41
465 466 4.597079 CTTACAACAAATGTCGTTGCTGT 58.403 39.130 3.07 0.35 46.14 4.40
466 467 5.736486 TTACAACAAATGTCGTTGCTGTA 57.264 34.783 3.07 0.00 46.14 2.74
467 468 4.209452 ACAACAAATGTCGTTGCTGTAG 57.791 40.909 3.07 0.00 46.14 2.74
468 469 3.003275 ACAACAAATGTCGTTGCTGTAGG 59.997 43.478 3.07 0.00 46.14 3.18
469 470 3.120321 ACAAATGTCGTTGCTGTAGGA 57.880 42.857 0.00 0.00 31.29 2.94
470 471 3.067106 ACAAATGTCGTTGCTGTAGGAG 58.933 45.455 0.00 0.00 31.29 3.69
471 472 3.067106 CAAATGTCGTTGCTGTAGGAGT 58.933 45.455 0.00 0.00 0.00 3.85
472 473 2.370281 ATGTCGTTGCTGTAGGAGTG 57.630 50.000 0.00 0.00 0.00 3.51
473 474 0.319555 TGTCGTTGCTGTAGGAGTGC 60.320 55.000 0.00 0.00 0.00 4.40
474 475 0.319555 GTCGTTGCTGTAGGAGTGCA 60.320 55.000 0.00 0.00 34.69 4.57
475 476 0.391228 TCGTTGCTGTAGGAGTGCAA 59.609 50.000 0.00 0.00 43.25 4.08
542 543 0.462047 CGAGCAAGAATAACCGCCCT 60.462 55.000 0.00 0.00 0.00 5.19
611 616 4.678743 GGCCCCACTGACAACCCC 62.679 72.222 0.00 0.00 0.00 4.95
747 753 4.694987 CCAAACCACGGGCCCCAT 62.695 66.667 18.66 0.37 0.00 4.00
795 819 2.586357 GATCACGAGGCGAAGGGC 60.586 66.667 0.00 0.00 42.51 5.19
891 915 0.179026 GCCTCCCCGATAAAACCCTC 60.179 60.000 0.00 0.00 0.00 4.30
932 962 4.547367 CGCCTCCGTGAATCCCCC 62.547 72.222 0.00 0.00 0.00 5.40
933 963 3.407967 GCCTCCGTGAATCCCCCA 61.408 66.667 0.00 0.00 0.00 4.96
939 969 3.728373 GTGAATCCCCCACGCCCT 61.728 66.667 0.00 0.00 0.00 5.19
966 996 1.446792 ACAACGCATCGCTCTCCAG 60.447 57.895 0.00 0.00 0.00 3.86
973 1003 1.933247 CATCGCTCTCCAGGAAAGAC 58.067 55.000 0.00 0.00 0.00 3.01
980 1010 2.300437 CTCTCCAGGAAAGACTTTCGGT 59.700 50.000 19.22 8.39 40.57 4.69
981 1011 2.704065 TCTCCAGGAAAGACTTTCGGTT 59.296 45.455 19.22 7.03 40.57 4.44
1172 1211 3.256960 GCACCAGGTGGGGGAAGA 61.257 66.667 21.77 0.00 46.16 2.87
1176 1218 4.101448 CAGGTGGGGGAAGAGGCG 62.101 72.222 0.00 0.00 0.00 5.52
1177 1219 4.332543 AGGTGGGGGAAGAGGCGA 62.333 66.667 0.00 0.00 0.00 5.54
1504 1552 3.083349 CCTCCATGGACCTCGGCA 61.083 66.667 11.44 0.00 38.35 5.69
1708 1768 3.958860 GCTGGTGGTGGTGCTCCT 61.959 66.667 6.34 0.00 34.23 3.69
1776 1839 8.032952 TCATACAGCAGTAGAACTCAATTTTG 57.967 34.615 0.00 0.00 32.86 2.44
1777 1840 7.661437 TCATACAGCAGTAGAACTCAATTTTGT 59.339 33.333 0.00 0.00 32.86 2.83
1778 1841 6.305693 ACAGCAGTAGAACTCAATTTTGTC 57.694 37.500 0.00 0.00 0.00 3.18
1809 1872 8.463930 AATAGTCACAGAATTTGTCCAGAAAA 57.536 30.769 0.00 0.00 38.16 2.29
1824 1888 2.478134 CAGAAAACTCCTCTCGCTTGTG 59.522 50.000 0.00 0.00 0.00 3.33
1961 2032 6.211184 TGCATGACAATTCCTACCTTTCATTT 59.789 34.615 0.00 0.00 0.00 2.32
2109 2183 6.042143 CACAAACAAGAAATGGCAAGTACTT 58.958 36.000 1.12 1.12 0.00 2.24
2110 2184 7.067615 TCACAAACAAGAAATGGCAAGTACTTA 59.932 33.333 8.04 0.00 0.00 2.24
2111 2185 7.704472 CACAAACAAGAAATGGCAAGTACTTAA 59.296 33.333 8.04 0.00 0.00 1.85
2112 2186 7.704899 ACAAACAAGAAATGGCAAGTACTTAAC 59.295 33.333 8.04 4.83 0.00 2.01
2113 2187 7.582667 AACAAGAAATGGCAAGTACTTAACT 57.417 32.000 8.04 0.00 41.49 2.24
2155 2229 5.227184 GCAACTTAATTAAGACCGCAAATCG 59.773 40.000 27.92 2.23 37.08 3.34
2192 2266 1.754234 CAGAAAATGCGGGGGAGGG 60.754 63.158 0.00 0.00 0.00 4.30
2229 2307 0.393448 TCCCGTCGGTGTCAATTCAA 59.607 50.000 11.06 0.00 0.00 2.69
2231 2309 2.234168 TCCCGTCGGTGTCAATTCAATA 59.766 45.455 11.06 0.00 0.00 1.90
2337 2429 8.613060 TCATCAAGAATCAAATAGAGTATGCC 57.387 34.615 0.00 0.00 0.00 4.40
2338 2430 8.435187 TCATCAAGAATCAAATAGAGTATGCCT 58.565 33.333 0.00 0.00 0.00 4.75
2339 2431 8.504815 CATCAAGAATCAAATAGAGTATGCCTG 58.495 37.037 0.00 0.00 0.00 4.85
2340 2432 6.484643 TCAAGAATCAAATAGAGTATGCCTGC 59.515 38.462 0.00 0.00 0.00 4.85
2528 2627 6.291377 AGCTCAACAAGTGACAGAAGAATTA 58.709 36.000 0.00 0.00 31.13 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.227674 GGATCGACATCCCTGGTGC 60.228 63.158 0.00 0.00 42.91 5.01
8 9 2.354773 GACGCGGGGATCGACATC 60.355 66.667 12.47 0.00 42.43 3.06
9 10 3.912907 GGACGCGGGGATCGACAT 61.913 66.667 12.47 0.00 42.43 3.06
11 12 4.267503 GAGGACGCGGGGATCGAC 62.268 72.222 12.47 0.00 42.43 4.20
12 13 3.110897 TAGAGGACGCGGGGATCGA 62.111 63.158 12.47 0.00 42.43 3.59
13 14 2.593725 TAGAGGACGCGGGGATCG 60.594 66.667 12.47 0.00 42.76 3.69
14 15 2.921797 GCTAGAGGACGCGGGGATC 61.922 68.421 12.47 2.60 0.00 3.36
15 16 2.913060 GCTAGAGGACGCGGGGAT 60.913 66.667 12.47 0.00 0.00 3.85
16 17 4.435970 TGCTAGAGGACGCGGGGA 62.436 66.667 12.47 0.00 0.00 4.81
17 18 3.905678 CTGCTAGAGGACGCGGGG 61.906 72.222 12.47 0.00 0.00 5.73
18 19 3.141488 ACTGCTAGAGGACGCGGG 61.141 66.667 12.47 0.00 36.85 6.13
19 20 2.103143 CACTGCTAGAGGACGCGG 59.897 66.667 12.47 0.00 38.46 6.46
20 21 1.226435 GTCACTGCTAGAGGACGCG 60.226 63.158 3.53 3.53 0.00 6.01
21 22 0.179150 CAGTCACTGCTAGAGGACGC 60.179 60.000 0.00 0.00 35.49 5.19
22 23 1.135546 CACAGTCACTGCTAGAGGACG 60.136 57.143 4.13 0.00 34.37 4.79
23 24 1.203523 CCACAGTCACTGCTAGAGGAC 59.796 57.143 4.13 0.00 34.37 3.85
24 25 1.075536 TCCACAGTCACTGCTAGAGGA 59.924 52.381 4.13 2.08 34.37 3.71
25 26 1.476085 CTCCACAGTCACTGCTAGAGG 59.524 57.143 4.13 0.00 34.37 3.69
26 27 1.476085 CCTCCACAGTCACTGCTAGAG 59.524 57.143 4.13 8.44 34.37 2.43
27 28 1.203063 ACCTCCACAGTCACTGCTAGA 60.203 52.381 4.13 0.00 34.37 2.43
28 29 1.261480 ACCTCCACAGTCACTGCTAG 58.739 55.000 4.13 0.00 34.37 3.42
29 30 2.447443 CTACCTCCACAGTCACTGCTA 58.553 52.381 4.13 0.00 34.37 3.49
30 31 1.261480 CTACCTCCACAGTCACTGCT 58.739 55.000 4.13 0.00 34.37 4.24
31 32 0.390472 GCTACCTCCACAGTCACTGC 60.390 60.000 4.13 0.00 34.37 4.40
32 33 0.109086 CGCTACCTCCACAGTCACTG 60.109 60.000 2.22 2.22 37.52 3.66
33 34 1.251527 CCGCTACCTCCACAGTCACT 61.252 60.000 0.00 0.00 0.00 3.41
34 35 1.215647 CCGCTACCTCCACAGTCAC 59.784 63.158 0.00 0.00 0.00 3.67
35 36 0.830444 AACCGCTACCTCCACAGTCA 60.830 55.000 0.00 0.00 0.00 3.41
36 37 0.389948 CAACCGCTACCTCCACAGTC 60.390 60.000 0.00 0.00 0.00 3.51
37 38 1.119574 ACAACCGCTACCTCCACAGT 61.120 55.000 0.00 0.00 0.00 3.55
38 39 0.892755 TACAACCGCTACCTCCACAG 59.107 55.000 0.00 0.00 0.00 3.66
39 40 1.563924 ATACAACCGCTACCTCCACA 58.436 50.000 0.00 0.00 0.00 4.17
40 41 2.223900 GGTATACAACCGCTACCTCCAC 60.224 54.545 5.01 0.00 38.88 4.02
41 42 2.034124 GGTATACAACCGCTACCTCCA 58.966 52.381 5.01 0.00 38.88 3.86
42 43 2.808523 GGTATACAACCGCTACCTCC 57.191 55.000 5.01 0.00 38.88 4.30
52 53 2.752903 CTGGCAACCCTTGGTATACAAC 59.247 50.000 5.01 0.00 33.12 3.32
53 54 2.882229 GCTGGCAACCCTTGGTATACAA 60.882 50.000 5.01 0.00 33.12 2.41
54 55 1.340600 GCTGGCAACCCTTGGTATACA 60.341 52.381 5.01 0.00 33.12 2.29
55 56 1.389555 GCTGGCAACCCTTGGTATAC 58.610 55.000 0.00 0.00 33.12 1.47
56 57 0.107410 CGCTGGCAACCCTTGGTATA 60.107 55.000 0.00 0.00 33.12 1.47
57 58 1.378514 CGCTGGCAACCCTTGGTAT 60.379 57.895 0.00 0.00 33.12 2.73
58 59 2.033448 CGCTGGCAACCCTTGGTA 59.967 61.111 0.00 0.00 33.12 3.25
59 60 3.884774 TCGCTGGCAACCCTTGGT 61.885 61.111 0.00 0.00 37.65 3.67
60 61 3.365265 GTCGCTGGCAACCCTTGG 61.365 66.667 0.00 0.00 0.00 3.61
61 62 3.365265 GGTCGCTGGCAACCCTTG 61.365 66.667 0.00 0.00 0.00 3.61
69 70 3.682292 CTTACCCAGGGTCGCTGGC 62.682 68.421 26.72 0.00 40.50 4.85
70 71 2.291043 ACTTACCCAGGGTCGCTGG 61.291 63.158 25.50 25.50 41.45 4.85
71 72 1.079127 CACTTACCCAGGGTCGCTG 60.079 63.158 17.08 9.90 37.09 5.18
72 73 2.291043 CCACTTACCCAGGGTCGCT 61.291 63.158 17.08 0.00 37.09 4.93
73 74 2.267961 CCACTTACCCAGGGTCGC 59.732 66.667 17.08 0.00 37.09 5.19
74 75 1.611261 TCCCACTTACCCAGGGTCG 60.611 63.158 17.08 10.56 43.31 4.79
75 76 0.546988 AGTCCCACTTACCCAGGGTC 60.547 60.000 17.08 0.00 43.31 4.46
76 77 0.104090 AAGTCCCACTTACCCAGGGT 60.104 55.000 17.82 17.82 43.31 4.34
77 78 0.328258 CAAGTCCCACTTACCCAGGG 59.672 60.000 2.85 2.85 44.22 4.45
78 79 0.322546 GCAAGTCCCACTTACCCAGG 60.323 60.000 0.00 0.00 36.03 4.45
79 80 0.400213 TGCAAGTCCCACTTACCCAG 59.600 55.000 0.00 0.00 36.03 4.45
80 81 0.109723 GTGCAAGTCCCACTTACCCA 59.890 55.000 0.00 0.00 36.03 4.51
81 82 0.400594 AGTGCAAGTCCCACTTACCC 59.599 55.000 0.00 0.00 40.45 3.69
82 83 2.302157 AGTAGTGCAAGTCCCACTTACC 59.698 50.000 0.00 0.00 42.98 2.85
83 84 3.586892 GAGTAGTGCAAGTCCCACTTAC 58.413 50.000 0.00 0.00 42.98 2.34
84 85 2.565834 GGAGTAGTGCAAGTCCCACTTA 59.434 50.000 1.25 0.00 42.98 2.24
85 86 1.348036 GGAGTAGTGCAAGTCCCACTT 59.652 52.381 1.25 0.00 42.98 3.16
86 87 0.977395 GGAGTAGTGCAAGTCCCACT 59.023 55.000 1.25 0.00 44.99 4.00
87 88 0.389948 CGGAGTAGTGCAAGTCCCAC 60.390 60.000 6.67 0.00 35.82 4.61
88 89 0.830444 ACGGAGTAGTGCAAGTCCCA 60.830 55.000 6.67 0.00 41.94 4.37
89 90 1.972978 ACGGAGTAGTGCAAGTCCC 59.027 57.895 6.67 0.00 41.94 4.46
106 107 2.150837 GCTACGTCTTGCCGTCGAC 61.151 63.158 5.18 5.18 42.00 4.20
107 108 2.177531 GCTACGTCTTGCCGTCGA 59.822 61.111 0.00 0.00 42.00 4.20
108 109 2.879462 GGCTACGTCTTGCCGTCG 60.879 66.667 10.62 0.00 42.00 5.12
113 114 1.491563 CGTTGTGGCTACGTCTTGC 59.508 57.895 0.00 0.00 34.47 4.01
114 115 1.491563 GCGTTGTGGCTACGTCTTG 59.508 57.895 0.00 0.00 40.92 3.02
115 116 1.666872 GGCGTTGTGGCTACGTCTT 60.667 57.895 0.00 0.00 40.25 3.01
116 117 2.048503 GGCGTTGTGGCTACGTCT 60.049 61.111 0.00 0.00 40.25 4.18
117 118 3.475774 CGGCGTTGTGGCTACGTC 61.476 66.667 0.00 5.79 40.92 4.34
118 119 3.980989 TCGGCGTTGTGGCTACGT 61.981 61.111 6.85 0.00 40.92 3.57
119 120 3.475774 GTCGGCGTTGTGGCTACG 61.476 66.667 6.85 0.00 42.02 3.51
120 121 1.500512 TTTGTCGGCGTTGTGGCTAC 61.501 55.000 6.85 0.00 42.02 3.58
121 122 0.814410 TTTTGTCGGCGTTGTGGCTA 60.814 50.000 6.85 0.00 42.02 3.93
122 123 1.452145 ATTTTGTCGGCGTTGTGGCT 61.452 50.000 6.85 0.00 42.02 4.75
123 124 1.007849 ATTTTGTCGGCGTTGTGGC 60.008 52.632 6.85 0.00 40.44 5.01
124 125 0.662970 CCATTTTGTCGGCGTTGTGG 60.663 55.000 6.85 4.55 0.00 4.17
125 126 0.662970 CCCATTTTGTCGGCGTTGTG 60.663 55.000 6.85 0.00 0.00 3.33
126 127 1.657556 CCCATTTTGTCGGCGTTGT 59.342 52.632 6.85 0.00 0.00 3.32
127 128 1.732683 GCCCATTTTGTCGGCGTTG 60.733 57.895 6.85 0.00 31.92 4.10
128 129 2.648454 GCCCATTTTGTCGGCGTT 59.352 55.556 6.85 0.00 31.92 4.84
131 132 2.178273 GACGCCCATTTTGTCGGC 59.822 61.111 0.00 0.00 39.41 5.54
134 135 1.209127 CACCGACGCCCATTTTGTC 59.791 57.895 0.00 0.00 0.00 3.18
135 136 2.265182 CCACCGACGCCCATTTTGT 61.265 57.895 0.00 0.00 0.00 2.83
136 137 1.312371 ATCCACCGACGCCCATTTTG 61.312 55.000 0.00 0.00 0.00 2.44
137 138 1.001393 ATCCACCGACGCCCATTTT 60.001 52.632 0.00 0.00 0.00 1.82
138 139 1.748879 CATCCACCGACGCCCATTT 60.749 57.895 0.00 0.00 0.00 2.32
139 140 2.124736 CATCCACCGACGCCCATT 60.125 61.111 0.00 0.00 0.00 3.16
140 141 3.399181 ACATCCACCGACGCCCAT 61.399 61.111 0.00 0.00 0.00 4.00
141 142 4.386951 CACATCCACCGACGCCCA 62.387 66.667 0.00 0.00 0.00 5.36
145 146 2.815211 CTGCCACATCCACCGACG 60.815 66.667 0.00 0.00 0.00 5.12
146 147 2.034879 CACTGCCACATCCACCGAC 61.035 63.158 0.00 0.00 0.00 4.79
147 148 2.347114 CACTGCCACATCCACCGA 59.653 61.111 0.00 0.00 0.00 4.69
148 149 2.747460 CCACTGCCACATCCACCG 60.747 66.667 0.00 0.00 0.00 4.94
149 150 1.973281 CACCACTGCCACATCCACC 60.973 63.158 0.00 0.00 0.00 4.61
150 151 0.537143 TTCACCACTGCCACATCCAC 60.537 55.000 0.00 0.00 0.00 4.02
151 152 0.405198 ATTCACCACTGCCACATCCA 59.595 50.000 0.00 0.00 0.00 3.41
152 153 2.292267 CTATTCACCACTGCCACATCC 58.708 52.381 0.00 0.00 0.00 3.51
153 154 2.292267 CCTATTCACCACTGCCACATC 58.708 52.381 0.00 0.00 0.00 3.06
154 155 1.635487 ACCTATTCACCACTGCCACAT 59.365 47.619 0.00 0.00 0.00 3.21
155 156 1.064003 ACCTATTCACCACTGCCACA 58.936 50.000 0.00 0.00 0.00 4.17
156 157 1.812571 CAACCTATTCACCACTGCCAC 59.187 52.381 0.00 0.00 0.00 5.01
157 158 1.271871 CCAACCTATTCACCACTGCCA 60.272 52.381 0.00 0.00 0.00 4.92
158 159 1.004277 TCCAACCTATTCACCACTGCC 59.996 52.381 0.00 0.00 0.00 4.85
159 160 2.489938 TCCAACCTATTCACCACTGC 57.510 50.000 0.00 0.00 0.00 4.40
160 161 2.749621 GCTTCCAACCTATTCACCACTG 59.250 50.000 0.00 0.00 0.00 3.66
161 162 2.644798 AGCTTCCAACCTATTCACCACT 59.355 45.455 0.00 0.00 0.00 4.00
162 163 2.749621 CAGCTTCCAACCTATTCACCAC 59.250 50.000 0.00 0.00 0.00 4.16
163 164 2.290896 CCAGCTTCCAACCTATTCACCA 60.291 50.000 0.00 0.00 0.00 4.17
164 165 2.026262 TCCAGCTTCCAACCTATTCACC 60.026 50.000 0.00 0.00 0.00 4.02
165 166 3.350219 TCCAGCTTCCAACCTATTCAC 57.650 47.619 0.00 0.00 0.00 3.18
166 167 4.721776 ACTATCCAGCTTCCAACCTATTCA 59.278 41.667 0.00 0.00 0.00 2.57
167 168 5.059833 CACTATCCAGCTTCCAACCTATTC 58.940 45.833 0.00 0.00 0.00 1.75
168 169 4.141390 CCACTATCCAGCTTCCAACCTATT 60.141 45.833 0.00 0.00 0.00 1.73
169 170 3.392616 CCACTATCCAGCTTCCAACCTAT 59.607 47.826 0.00 0.00 0.00 2.57
170 171 2.771943 CCACTATCCAGCTTCCAACCTA 59.228 50.000 0.00 0.00 0.00 3.08
171 172 1.561542 CCACTATCCAGCTTCCAACCT 59.438 52.381 0.00 0.00 0.00 3.50
172 173 2.019156 GCCACTATCCAGCTTCCAACC 61.019 57.143 0.00 0.00 0.00 3.77
173 174 1.383523 GCCACTATCCAGCTTCCAAC 58.616 55.000 0.00 0.00 0.00 3.77
174 175 0.107703 CGCCACTATCCAGCTTCCAA 60.108 55.000 0.00 0.00 0.00 3.53
175 176 0.975556 TCGCCACTATCCAGCTTCCA 60.976 55.000 0.00 0.00 0.00 3.53
176 177 0.530870 GTCGCCACTATCCAGCTTCC 60.531 60.000 0.00 0.00 0.00 3.46
177 178 0.872021 CGTCGCCACTATCCAGCTTC 60.872 60.000 0.00 0.00 0.00 3.86
178 179 1.141881 CGTCGCCACTATCCAGCTT 59.858 57.895 0.00 0.00 0.00 3.74
179 180 1.729470 CTCGTCGCCACTATCCAGCT 61.729 60.000 0.00 0.00 0.00 4.24
180 181 1.299468 CTCGTCGCCACTATCCAGC 60.299 63.158 0.00 0.00 0.00 4.85
181 182 1.360551 CCTCGTCGCCACTATCCAG 59.639 63.158 0.00 0.00 0.00 3.86
182 183 2.125326 CCCTCGTCGCCACTATCCA 61.125 63.158 0.00 0.00 0.00 3.41
183 184 2.728817 CCCTCGTCGCCACTATCC 59.271 66.667 0.00 0.00 0.00 2.59
184 185 2.027751 GCCCTCGTCGCCACTATC 59.972 66.667 0.00 0.00 0.00 2.08
185 186 3.900892 CGCCCTCGTCGCCACTAT 61.901 66.667 0.00 0.00 0.00 2.12
190 191 4.856607 CTCTTCGCCCTCGTCGCC 62.857 72.222 0.00 0.00 36.96 5.54
191 192 4.856607 CCTCTTCGCCCTCGTCGC 62.857 72.222 0.00 0.00 36.96 5.19
192 193 4.194720 CCCTCTTCGCCCTCGTCG 62.195 72.222 0.00 0.00 36.96 5.12
193 194 1.726533 CTACCCTCTTCGCCCTCGTC 61.727 65.000 0.00 0.00 36.96 4.20
194 195 1.753463 CTACCCTCTTCGCCCTCGT 60.753 63.158 0.00 0.00 36.96 4.18
195 196 2.491022 CCTACCCTCTTCGCCCTCG 61.491 68.421 0.00 0.00 0.00 4.63
196 197 2.134933 CCCTACCCTCTTCGCCCTC 61.135 68.421 0.00 0.00 0.00 4.30
197 198 2.041819 CCCTACCCTCTTCGCCCT 60.042 66.667 0.00 0.00 0.00 5.19
198 199 2.365237 ACCCTACCCTCTTCGCCC 60.365 66.667 0.00 0.00 0.00 6.13
199 200 1.551019 AACACCCTACCCTCTTCGCC 61.551 60.000 0.00 0.00 0.00 5.54
200 201 0.108281 GAACACCCTACCCTCTTCGC 60.108 60.000 0.00 0.00 0.00 4.70
201 202 0.172803 CGAACACCCTACCCTCTTCG 59.827 60.000 0.00 0.00 0.00 3.79
202 203 1.067071 CACGAACACCCTACCCTCTTC 60.067 57.143 0.00 0.00 0.00 2.87
203 204 0.974383 CACGAACACCCTACCCTCTT 59.026 55.000 0.00 0.00 0.00 2.85
204 205 0.903454 CCACGAACACCCTACCCTCT 60.903 60.000 0.00 0.00 0.00 3.69
205 206 1.595357 CCACGAACACCCTACCCTC 59.405 63.158 0.00 0.00 0.00 4.30
206 207 1.916777 CCCACGAACACCCTACCCT 60.917 63.158 0.00 0.00 0.00 4.34
207 208 2.666812 CCCACGAACACCCTACCC 59.333 66.667 0.00 0.00 0.00 3.69
208 209 2.219164 ACCCCACGAACACCCTACC 61.219 63.158 0.00 0.00 0.00 3.18
209 210 1.004200 CACCCCACGAACACCCTAC 60.004 63.158 0.00 0.00 0.00 3.18
210 211 1.152290 TCACCCCACGAACACCCTA 60.152 57.895 0.00 0.00 0.00 3.53
211 212 2.446994 TCACCCCACGAACACCCT 60.447 61.111 0.00 0.00 0.00 4.34
212 213 2.032071 CTCACCCCACGAACACCC 59.968 66.667 0.00 0.00 0.00 4.61
213 214 2.032071 CCTCACCCCACGAACACC 59.968 66.667 0.00 0.00 0.00 4.16
214 215 1.004918 CTCCTCACCCCACGAACAC 60.005 63.158 0.00 0.00 0.00 3.32
215 216 2.214216 CCTCCTCACCCCACGAACA 61.214 63.158 0.00 0.00 0.00 3.18
216 217 2.663196 CCTCCTCACCCCACGAAC 59.337 66.667 0.00 0.00 0.00 3.95
217 218 2.606519 CCCTCCTCACCCCACGAA 60.607 66.667 0.00 0.00 0.00 3.85
218 219 3.923645 ACCCTCCTCACCCCACGA 61.924 66.667 0.00 0.00 0.00 4.35
219 220 3.706373 CACCCTCCTCACCCCACG 61.706 72.222 0.00 0.00 0.00 4.94
220 221 1.208165 ATTCACCCTCCTCACCCCAC 61.208 60.000 0.00 0.00 0.00 4.61
221 222 1.163309 ATTCACCCTCCTCACCCCA 59.837 57.895 0.00 0.00 0.00 4.96
222 223 0.914417 TCATTCACCCTCCTCACCCC 60.914 60.000 0.00 0.00 0.00 4.95
223 224 0.253327 GTCATTCACCCTCCTCACCC 59.747 60.000 0.00 0.00 0.00 4.61
224 225 0.984230 TGTCATTCACCCTCCTCACC 59.016 55.000 0.00 0.00 0.00 4.02
225 226 2.039084 ACTTGTCATTCACCCTCCTCAC 59.961 50.000 0.00 0.00 0.00 3.51
226 227 2.038952 CACTTGTCATTCACCCTCCTCA 59.961 50.000 0.00 0.00 0.00 3.86
227 228 2.039084 ACACTTGTCATTCACCCTCCTC 59.961 50.000 0.00 0.00 0.00 3.71
228 229 2.057922 ACACTTGTCATTCACCCTCCT 58.942 47.619 0.00 0.00 0.00 3.69
229 230 2.154462 CACACTTGTCATTCACCCTCC 58.846 52.381 0.00 0.00 0.00 4.30
230 231 1.537202 GCACACTTGTCATTCACCCTC 59.463 52.381 0.00 0.00 0.00 4.30
231 232 1.609208 GCACACTTGTCATTCACCCT 58.391 50.000 0.00 0.00 0.00 4.34
232 233 0.238289 CGCACACTTGTCATTCACCC 59.762 55.000 0.00 0.00 0.00 4.61
233 234 1.069906 GTCGCACACTTGTCATTCACC 60.070 52.381 0.00 0.00 0.00 4.02
234 235 1.069906 GGTCGCACACTTGTCATTCAC 60.070 52.381 0.00 0.00 0.00 3.18
235 236 1.225855 GGTCGCACACTTGTCATTCA 58.774 50.000 0.00 0.00 0.00 2.57
236 237 0.163788 CGGTCGCACACTTGTCATTC 59.836 55.000 0.00 0.00 0.00 2.67
237 238 0.249699 TCGGTCGCACACTTGTCATT 60.250 50.000 0.00 0.00 0.00 2.57
238 239 0.944311 GTCGGTCGCACACTTGTCAT 60.944 55.000 0.00 0.00 0.00 3.06
239 240 1.590525 GTCGGTCGCACACTTGTCA 60.591 57.895 0.00 0.00 0.00 3.58
240 241 1.548973 CTGTCGGTCGCACACTTGTC 61.549 60.000 0.00 0.00 0.00 3.18
241 242 1.591594 CTGTCGGTCGCACACTTGT 60.592 57.895 0.00 0.00 0.00 3.16
242 243 2.310233 CCTGTCGGTCGCACACTTG 61.310 63.158 0.00 0.00 0.00 3.16
243 244 2.029073 CCTGTCGGTCGCACACTT 59.971 61.111 0.00 0.00 0.00 3.16
244 245 4.664677 GCCTGTCGGTCGCACACT 62.665 66.667 0.00 0.00 0.00 3.55
245 246 4.961511 TGCCTGTCGGTCGCACAC 62.962 66.667 0.00 0.00 0.00 3.82
255 256 4.329545 TTCCCTGGCGTGCCTGTC 62.330 66.667 12.84 0.00 36.94 3.51
256 257 4.335647 CTTCCCTGGCGTGCCTGT 62.336 66.667 12.84 0.00 36.94 4.00
290 291 3.346631 ATCCACGCGGACACGTACC 62.347 63.158 12.47 0.00 46.79 3.34
291 292 2.156446 CATCCACGCGGACACGTAC 61.156 63.158 12.47 0.00 46.79 3.67
292 293 2.179767 CATCCACGCGGACACGTA 59.820 61.111 12.47 0.00 46.79 3.57
295 296 3.047280 TTGCATCCACGCGGACAC 61.047 61.111 12.47 0.00 46.79 3.67
296 297 3.047280 GTTGCATCCACGCGGACA 61.047 61.111 12.47 0.00 46.79 4.02
297 298 2.240612 GAAGTTGCATCCACGCGGAC 62.241 60.000 12.47 0.00 46.79 4.79
299 300 2.244436 CTGAAGTTGCATCCACGCGG 62.244 60.000 12.47 0.00 33.35 6.46
300 301 1.133253 CTGAAGTTGCATCCACGCG 59.867 57.895 3.53 3.53 33.35 6.01
301 302 1.503542 CCTGAAGTTGCATCCACGC 59.496 57.895 0.00 0.00 0.00 5.34
302 303 1.503542 GCCTGAAGTTGCATCCACG 59.496 57.895 0.00 0.00 0.00 4.94
303 304 0.895100 TGGCCTGAAGTTGCATCCAC 60.895 55.000 3.32 0.00 0.00 4.02
304 305 0.178967 TTGGCCTGAAGTTGCATCCA 60.179 50.000 3.32 0.00 0.00 3.41
305 306 0.968405 TTTGGCCTGAAGTTGCATCC 59.032 50.000 3.32 0.00 0.00 3.51
306 307 3.323751 AATTTGGCCTGAAGTTGCATC 57.676 42.857 3.32 0.00 0.00 3.91
307 308 3.071312 TCAAATTTGGCCTGAAGTTGCAT 59.929 39.130 17.90 0.00 33.50 3.96
308 309 2.433604 TCAAATTTGGCCTGAAGTTGCA 59.566 40.909 17.90 11.37 33.50 4.08
309 310 3.110447 TCAAATTTGGCCTGAAGTTGC 57.890 42.857 17.90 0.00 33.50 4.17
310 311 4.696455 AGTTCAAATTTGGCCTGAAGTTG 58.304 39.130 17.90 19.65 34.44 3.16
311 312 5.011023 CCTAGTTCAAATTTGGCCTGAAGTT 59.989 40.000 17.90 8.01 35.09 2.66
312 313 4.524328 CCTAGTTCAAATTTGGCCTGAAGT 59.476 41.667 17.90 14.44 36.80 3.01
313 314 4.766891 TCCTAGTTCAAATTTGGCCTGAAG 59.233 41.667 17.90 8.86 30.00 3.02
314 315 4.735369 TCCTAGTTCAAATTTGGCCTGAA 58.265 39.130 17.90 1.59 0.00 3.02
315 316 4.380843 TCCTAGTTCAAATTTGGCCTGA 57.619 40.909 17.90 0.00 0.00 3.86
316 317 5.413499 CATTCCTAGTTCAAATTTGGCCTG 58.587 41.667 17.90 8.61 0.00 4.85
317 318 4.467438 CCATTCCTAGTTCAAATTTGGCCT 59.533 41.667 17.90 14.99 0.00 5.19
318 319 4.383010 CCCATTCCTAGTTCAAATTTGGCC 60.383 45.833 17.90 8.81 0.00 5.36
319 320 4.222810 ACCCATTCCTAGTTCAAATTTGGC 59.777 41.667 17.90 11.16 0.00 4.52
320 321 5.105351 GGACCCATTCCTAGTTCAAATTTGG 60.105 44.000 17.90 1.00 41.95 3.28
321 322 5.480073 TGGACCCATTCCTAGTTCAAATTTG 59.520 40.000 12.15 12.15 46.10 2.32
322 323 5.650283 TGGACCCATTCCTAGTTCAAATTT 58.350 37.500 0.00 0.00 46.10 1.82
323 324 5.269554 TGGACCCATTCCTAGTTCAAATT 57.730 39.130 0.00 0.00 46.10 1.82
324 325 4.946160 TGGACCCATTCCTAGTTCAAAT 57.054 40.909 0.00 0.00 46.10 2.32
325 326 4.733077 TTGGACCCATTCCTAGTTCAAA 57.267 40.909 0.00 0.00 46.10 2.69
326 327 4.508405 CCTTTGGACCCATTCCTAGTTCAA 60.508 45.833 0.00 0.00 46.10 2.69
327 328 3.010138 CCTTTGGACCCATTCCTAGTTCA 59.990 47.826 0.00 0.00 46.10 3.18
328 329 3.621558 CCTTTGGACCCATTCCTAGTTC 58.378 50.000 0.00 0.00 46.10 3.01
329 330 2.311841 CCCTTTGGACCCATTCCTAGTT 59.688 50.000 0.00 0.00 46.10 2.24
330 331 1.923148 CCCTTTGGACCCATTCCTAGT 59.077 52.381 0.00 0.00 46.10 2.57
331 332 2.205342 TCCCTTTGGACCCATTCCTAG 58.795 52.381 0.00 0.00 46.10 3.02
332 333 2.369668 TCCCTTTGGACCCATTCCTA 57.630 50.000 0.00 0.00 46.10 2.94
333 334 3.213999 TCCCTTTGGACCCATTCCT 57.786 52.632 0.00 0.00 46.10 3.36
342 343 2.029964 GCACGACGTCCCTTTGGA 59.970 61.111 10.58 0.00 38.75 3.53
343 344 3.411351 CGCACGACGTCCCTTTGG 61.411 66.667 10.58 0.00 36.87 3.28
363 364 2.428960 AAAAATCACCCCAACGCGGC 62.429 55.000 12.47 0.00 0.00 6.53
364 365 1.663173 AAAAATCACCCCAACGCGG 59.337 52.632 12.47 0.00 0.00 6.46
385 386 3.802675 GCGTCTATCTGGGTTTATGGGAC 60.803 52.174 0.00 0.00 0.00 4.46
386 387 2.367567 GCGTCTATCTGGGTTTATGGGA 59.632 50.000 0.00 0.00 0.00 4.37
387 388 2.767505 GCGTCTATCTGGGTTTATGGG 58.232 52.381 0.00 0.00 0.00 4.00
388 389 2.035449 TCGCGTCTATCTGGGTTTATGG 59.965 50.000 5.77 0.00 0.00 2.74
389 390 3.364889 TCGCGTCTATCTGGGTTTATG 57.635 47.619 5.77 0.00 0.00 1.90
390 391 3.714391 GTTCGCGTCTATCTGGGTTTAT 58.286 45.455 5.77 0.00 0.00 1.40
391 392 2.478370 CGTTCGCGTCTATCTGGGTTTA 60.478 50.000 5.77 0.00 35.57 2.01
392 393 1.734707 CGTTCGCGTCTATCTGGGTTT 60.735 52.381 5.77 0.00 35.57 3.27
393 394 0.179145 CGTTCGCGTCTATCTGGGTT 60.179 55.000 5.77 0.00 35.57 4.11
394 395 1.432251 CGTTCGCGTCTATCTGGGT 59.568 57.895 5.77 0.00 35.57 4.51
395 396 1.299165 CCGTTCGCGTCTATCTGGG 60.299 63.158 5.77 0.00 39.32 4.45
396 397 1.944676 GCCGTTCGCGTCTATCTGG 60.945 63.158 5.77 0.85 39.32 3.86
397 398 1.944676 GGCCGTTCGCGTCTATCTG 60.945 63.158 5.77 0.00 38.94 2.90
398 399 1.940883 TTGGCCGTTCGCGTCTATCT 61.941 55.000 5.77 0.00 38.94 1.98
399 400 1.079875 TTTGGCCGTTCGCGTCTATC 61.080 55.000 5.77 0.00 38.94 2.08
400 401 0.671163 TTTTGGCCGTTCGCGTCTAT 60.671 50.000 5.77 0.00 38.94 1.98
401 402 0.671163 ATTTTGGCCGTTCGCGTCTA 60.671 50.000 5.77 0.00 38.94 2.59
402 403 1.964373 ATTTTGGCCGTTCGCGTCT 60.964 52.632 5.77 0.00 38.94 4.18
403 404 1.795962 CATTTTGGCCGTTCGCGTC 60.796 57.895 5.77 0.00 38.94 5.19
404 405 2.254051 CATTTTGGCCGTTCGCGT 59.746 55.556 5.77 0.00 38.94 6.01
405 406 2.503809 CCATTTTGGCCGTTCGCG 60.504 61.111 0.00 0.00 38.94 5.87
406 407 2.126110 CCCATTTTGGCCGTTCGC 60.126 61.111 0.00 0.00 35.79 4.70
407 408 1.211709 GACCCATTTTGGCCGTTCG 59.788 57.895 0.00 0.00 35.79 3.95
408 409 1.589630 GGACCCATTTTGGCCGTTC 59.410 57.895 0.00 0.00 35.79 3.95
409 410 2.272447 CGGACCCATTTTGGCCGTT 61.272 57.895 0.00 0.00 39.03 4.44
410 411 2.675075 CGGACCCATTTTGGCCGT 60.675 61.111 0.00 0.00 39.03 5.68
411 412 3.448340 CCGGACCCATTTTGGCCG 61.448 66.667 0.00 0.00 41.64 6.13
412 413 3.770040 GCCGGACCCATTTTGGCC 61.770 66.667 5.05 0.00 39.83 5.36
413 414 4.128388 CGCCGGACCCATTTTGGC 62.128 66.667 5.05 0.00 42.29 4.52
414 415 4.128388 GCGCCGGACCCATTTTGG 62.128 66.667 5.05 0.00 37.25 3.28
415 416 2.224495 AATGCGCCGGACCCATTTTG 62.224 55.000 5.05 0.00 0.00 2.44
416 417 0.681564 TAATGCGCCGGACCCATTTT 60.682 50.000 5.05 0.00 32.07 1.82
417 418 1.077357 TAATGCGCCGGACCCATTT 60.077 52.632 5.05 0.00 32.07 2.32
418 419 1.525995 CTAATGCGCCGGACCCATT 60.526 57.895 5.05 12.53 34.01 3.16
419 420 1.978455 TTCTAATGCGCCGGACCCAT 61.978 55.000 5.05 0.00 0.00 4.00
420 421 1.978455 ATTCTAATGCGCCGGACCCA 61.978 55.000 5.05 0.00 0.00 4.51
421 422 0.818040 AATTCTAATGCGCCGGACCC 60.818 55.000 5.05 0.00 0.00 4.46
422 423 0.586802 GAATTCTAATGCGCCGGACC 59.413 55.000 5.05 0.00 0.00 4.46
423 424 0.232303 CGAATTCTAATGCGCCGGAC 59.768 55.000 5.05 0.00 29.45 4.79
424 425 2.600388 CGAATTCTAATGCGCCGGA 58.400 52.632 5.05 0.00 29.45 5.14
429 430 4.892655 TGTTGTAAGCGAATTCTAATGCG 58.107 39.130 3.52 0.00 40.46 4.73
430 431 7.273381 ACATTTGTTGTAAGCGAATTCTAATGC 59.727 33.333 3.52 0.00 36.57 3.56
431 432 8.673626 ACATTTGTTGTAAGCGAATTCTAATG 57.326 30.769 3.52 0.00 36.57 1.90
432 433 7.692291 CGACATTTGTTGTAAGCGAATTCTAAT 59.308 33.333 3.52 0.00 39.18 1.73
433 434 7.012943 CGACATTTGTTGTAAGCGAATTCTAA 58.987 34.615 3.52 0.00 39.18 2.10
434 435 6.146510 ACGACATTTGTTGTAAGCGAATTCTA 59.853 34.615 3.52 0.00 40.68 2.10
435 436 5.049680 ACGACATTTGTTGTAAGCGAATTCT 60.050 36.000 3.52 0.00 40.68 2.40
436 437 5.144359 ACGACATTTGTTGTAAGCGAATTC 58.856 37.500 1.66 0.00 40.68 2.17
437 438 5.103290 ACGACATTTGTTGTAAGCGAATT 57.897 34.783 1.66 0.00 40.68 2.17
438 439 4.742438 ACGACATTTGTTGTAAGCGAAT 57.258 36.364 1.66 0.00 40.68 3.34
439 440 4.275662 CAACGACATTTGTTGTAAGCGAA 58.724 39.130 4.06 0.00 41.57 4.70
440 441 3.846744 GCAACGACATTTGTTGTAAGCGA 60.847 43.478 4.06 0.00 46.48 4.93
441 442 2.400408 GCAACGACATTTGTTGTAAGCG 59.600 45.455 4.06 0.00 46.48 4.68
442 443 3.421888 CAGCAACGACATTTGTTGTAAGC 59.578 43.478 15.37 15.37 46.48 3.09
443 444 4.597079 ACAGCAACGACATTTGTTGTAAG 58.403 39.130 4.06 2.40 45.70 2.34
444 445 4.624336 ACAGCAACGACATTTGTTGTAA 57.376 36.364 4.06 0.00 45.70 2.41
445 446 4.212425 CCTACAGCAACGACATTTGTTGTA 59.788 41.667 11.01 11.01 45.70 2.41
448 449 3.472652 TCCTACAGCAACGACATTTGTT 58.527 40.909 0.00 0.00 0.00 2.83
449 450 3.067106 CTCCTACAGCAACGACATTTGT 58.933 45.455 0.00 0.00 0.00 2.83
450 451 3.067106 ACTCCTACAGCAACGACATTTG 58.933 45.455 0.00 0.00 0.00 2.32
451 452 3.067106 CACTCCTACAGCAACGACATTT 58.933 45.455 0.00 0.00 0.00 2.32
452 453 2.688507 CACTCCTACAGCAACGACATT 58.311 47.619 0.00 0.00 0.00 2.71
453 454 1.673033 GCACTCCTACAGCAACGACAT 60.673 52.381 0.00 0.00 0.00 3.06
454 455 0.319555 GCACTCCTACAGCAACGACA 60.320 55.000 0.00 0.00 0.00 4.35
455 456 0.319555 TGCACTCCTACAGCAACGAC 60.320 55.000 0.00 0.00 34.97 4.34
456 457 0.391228 TTGCACTCCTACAGCAACGA 59.609 50.000 0.00 0.00 42.71 3.85
457 458 2.912986 TTGCACTCCTACAGCAACG 58.087 52.632 0.00 0.00 42.71 4.10
459 460 2.618241 CAAAGTTGCACTCCTACAGCAA 59.382 45.455 0.00 0.00 45.07 3.91
460 461 2.221169 CAAAGTTGCACTCCTACAGCA 58.779 47.619 0.00 0.00 36.32 4.41
461 462 2.222027 ACAAAGTTGCACTCCTACAGC 58.778 47.619 0.00 0.00 0.00 4.40
462 463 4.393062 CCATACAAAGTTGCACTCCTACAG 59.607 45.833 0.00 0.00 0.00 2.74
463 464 4.323417 CCATACAAAGTTGCACTCCTACA 58.677 43.478 0.00 0.00 0.00 2.74
464 465 3.689649 CCCATACAAAGTTGCACTCCTAC 59.310 47.826 0.00 0.00 0.00 3.18
465 466 3.585289 TCCCATACAAAGTTGCACTCCTA 59.415 43.478 0.00 0.00 0.00 2.94
466 467 2.375174 TCCCATACAAAGTTGCACTCCT 59.625 45.455 0.00 0.00 0.00 3.69
467 468 2.749621 CTCCCATACAAAGTTGCACTCC 59.250 50.000 0.00 0.00 0.00 3.85
468 469 2.749621 CCTCCCATACAAAGTTGCACTC 59.250 50.000 0.00 0.00 0.00 3.51
469 470 2.555227 CCCTCCCATACAAAGTTGCACT 60.555 50.000 0.00 0.00 0.00 4.40
470 471 1.818674 CCCTCCCATACAAAGTTGCAC 59.181 52.381 0.00 0.00 0.00 4.57
471 472 1.272425 CCCCTCCCATACAAAGTTGCA 60.272 52.381 0.00 0.00 0.00 4.08
472 473 1.474330 CCCCTCCCATACAAAGTTGC 58.526 55.000 0.00 0.00 0.00 4.17
473 474 2.143876 CCCCCTCCCATACAAAGTTG 57.856 55.000 0.00 0.00 0.00 3.16
498 499 0.679640 TGATTCGTTGGATGGTGCCC 60.680 55.000 0.00 0.00 0.00 5.36
499 500 1.392589 ATGATTCGTTGGATGGTGCC 58.607 50.000 0.00 0.00 0.00 5.01
542 543 3.449018 GTGAGGATACAGAGCAGAAGGAA 59.551 47.826 0.00 0.00 41.41 3.36
583 588 4.947147 TGGGGCCAGACGTTGTGC 62.947 66.667 4.39 0.00 0.00 4.57
621 626 3.925090 CGGGCGGGGATCAGTACC 61.925 72.222 0.00 0.00 0.00 3.34
622 627 3.148031 GACGGGCGGGGATCAGTAC 62.148 68.421 0.00 0.00 0.00 2.73
623 628 2.836360 GACGGGCGGGGATCAGTA 60.836 66.667 0.00 0.00 0.00 2.74
779 803 3.077556 AGCCCTTCGCCTCGTGAT 61.078 61.111 0.00 0.00 38.78 3.06
795 819 1.227764 CTGCCATCCATCCGTCCAG 60.228 63.158 0.00 0.00 0.00 3.86
800 824 1.825191 CCCAACTGCCATCCATCCG 60.825 63.158 0.00 0.00 0.00 4.18
922 952 3.728373 AGGGCGTGGGGGATTCAC 61.728 66.667 0.00 0.00 0.00 3.18
923 953 3.727258 CAGGGCGTGGGGGATTCA 61.727 66.667 0.00 0.00 0.00 2.57
948 978 1.446792 CTGGAGAGCGATGCGTTGT 60.447 57.895 0.00 0.00 0.00 3.32
950 980 1.888436 TTCCTGGAGAGCGATGCGTT 61.888 55.000 0.00 0.00 0.00 4.84
980 1010 2.437396 GGGATCTCGGGGCGGTTAA 61.437 63.158 0.00 0.00 0.00 2.01
981 1011 2.841044 GGGATCTCGGGGCGGTTA 60.841 66.667 0.00 0.00 0.00 2.85
1135 1171 4.477975 CCACTCCTCGTCCGTCGC 62.478 72.222 0.00 0.00 39.67 5.19
1233 1275 2.743752 CCACTCGCGCACCTTCATG 61.744 63.158 8.75 0.00 0.00 3.07
1708 1768 6.638063 CGAGACAAGAAAATGAAAGAATTGCA 59.362 34.615 0.00 0.00 0.00 4.08
1776 1839 6.307318 ACAAATTCTGTGACTATTACGACGAC 59.693 38.462 0.00 0.00 36.69 4.34
1777 1840 6.384224 ACAAATTCTGTGACTATTACGACGA 58.616 36.000 0.00 0.00 36.69 4.20
1778 1841 6.237490 GGACAAATTCTGTGACTATTACGACG 60.237 42.308 0.00 0.00 38.84 5.12
1809 1872 2.201921 TAGACACAAGCGAGAGGAGT 57.798 50.000 0.00 0.00 0.00 3.85
1824 1888 6.541934 TGATGGGAGATGATGATCATAGAC 57.458 41.667 8.54 2.96 37.20 2.59
2034 2108 1.678970 GCCACCCTAAGTTGCTGGG 60.679 63.158 8.35 8.35 46.07 4.45
2061 2135 8.074972 GTGATATCTTTGGAATGATGAAAGCTC 58.925 37.037 3.98 0.00 0.00 4.09
2126 2200 4.335594 GCGGTCTTAATTAAGTTGCTGGAT 59.664 41.667 21.69 0.00 34.93 3.41
2175 2249 2.683475 CCCTCCCCCGCATTTTCT 59.317 61.111 0.00 0.00 0.00 2.52
2229 2307 1.345741 CATCATCTCACGGGTGGCTAT 59.654 52.381 0.00 0.00 0.00 2.97
2231 2309 0.977627 TCATCATCTCACGGGTGGCT 60.978 55.000 0.00 0.00 0.00 4.75
2339 2431 3.042560 AAAAACTGAGCAGCGGGC 58.957 55.556 0.00 0.00 45.30 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.