Multiple sequence alignment - TraesCS7B01G078000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G078000 chr7B 100.000 3002 0 0 1 3002 87825588 87828589 0.000000e+00 5544.0
1 TraesCS7B01G078000 chr7B 91.555 1267 81 14 1746 3002 87411059 87412309 0.000000e+00 1724.0
2 TraesCS7B01G078000 chr7B 82.917 240 31 7 2143 2376 119428965 119429200 1.090000e-49 207.0
3 TraesCS7B01G078000 chr4A 88.989 1226 82 23 816 2005 625978992 625977784 0.000000e+00 1467.0
4 TraesCS7B01G078000 chr2A 97.550 694 15 2 1 693 769638252 769637560 0.000000e+00 1186.0
5 TraesCS7B01G078000 chr2A 82.234 394 62 8 2597 2986 92480078 92480467 1.720000e-87 333.0
6 TraesCS7B01G078000 chr3B 93.892 704 30 6 1 693 815473481 815474182 0.000000e+00 1050.0
7 TraesCS7B01G078000 chr5D 91.795 585 39 2 1421 2005 543254708 543255283 0.000000e+00 806.0
8 TraesCS7B01G078000 chr5D 82.609 552 63 23 815 1345 543240323 543240862 9.810000e-125 457.0
9 TraesCS7B01G078000 chr5D 82.663 398 55 13 2596 2986 212570796 212570406 1.030000e-89 340.0
10 TraesCS7B01G078000 chr6B 95.843 433 10 2 82 506 655304934 655304502 0.000000e+00 693.0
11 TraesCS7B01G078000 chr6B 92.814 167 11 1 528 693 655304510 655304344 1.080000e-59 241.0
12 TraesCS7B01G078000 chr6B 86.634 202 23 3 2182 2382 427455511 427455709 1.400000e-53 220.0
13 TraesCS7B01G078000 chr6B 96.429 56 2 0 1 56 655304989 655304934 3.190000e-15 93.5
14 TraesCS7B01G078000 chr2D 83.418 392 57 5 2596 2986 512909417 512909033 1.020000e-94 357.0
15 TraesCS7B01G078000 chr2D 82.857 385 59 6 2606 2986 333261112 333260731 3.710000e-89 339.0
16 TraesCS7B01G078000 chr2D 81.772 395 64 7 2596 2986 523743054 523743444 1.040000e-84 324.0
17 TraesCS7B01G078000 chr2D 82.961 358 50 8 2633 2986 606408456 606408106 2.250000e-81 313.0
18 TraesCS7B01G078000 chr2D 87.817 197 21 3 2182 2377 350310863 350310669 8.370000e-56 228.0
19 TraesCS7B01G078000 chr7D 82.368 397 59 7 2596 2986 477657170 477656779 4.800000e-88 335.0
20 TraesCS7B01G078000 chr7D 83.262 233 31 7 2143 2369 267597016 267596786 1.090000e-49 207.0
21 TraesCS7B01G078000 chr1B 82.143 392 64 5 2596 2986 557544857 557545243 6.200000e-87 331.0
22 TraesCS7B01G078000 chr3D 86.634 202 23 3 2182 2382 483718286 483718484 1.400000e-53 220.0
23 TraesCS7B01G078000 chr3A 86.275 204 24 3 2183 2385 405979755 405979955 5.040000e-53 219.0
24 TraesCS7B01G078000 chr3A 86.275 204 24 3 2182 2384 419537642 419537842 5.040000e-53 219.0
25 TraesCS7B01G078000 chr1A 85.930 199 24 4 2186 2381 500967274 500967077 3.030000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G078000 chr7B 87825588 87828589 3001 False 5544.0 5544 100.000000 1 3002 1 chr7B.!!$F2 3001
1 TraesCS7B01G078000 chr7B 87411059 87412309 1250 False 1724.0 1724 91.555000 1746 3002 1 chr7B.!!$F1 1256
2 TraesCS7B01G078000 chr4A 625977784 625978992 1208 True 1467.0 1467 88.989000 816 2005 1 chr4A.!!$R1 1189
3 TraesCS7B01G078000 chr2A 769637560 769638252 692 True 1186.0 1186 97.550000 1 693 1 chr2A.!!$R1 692
4 TraesCS7B01G078000 chr3B 815473481 815474182 701 False 1050.0 1050 93.892000 1 693 1 chr3B.!!$F1 692
5 TraesCS7B01G078000 chr5D 543254708 543255283 575 False 806.0 806 91.795000 1421 2005 1 chr5D.!!$F2 584
6 TraesCS7B01G078000 chr5D 543240323 543240862 539 False 457.0 457 82.609000 815 1345 1 chr5D.!!$F1 530
7 TraesCS7B01G078000 chr6B 655304344 655304989 645 True 342.5 693 95.028667 1 693 3 chr6B.!!$R1 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 716 0.176219 CCCCGTGCGTAATTCACCTA 59.824 55.0 0.0 0.0 0.0 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2610 2676 0.392998 CCTCCCCATGTTTGTCTCCG 60.393 60.0 0.0 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 6.376581 TGATGCCACATAAATGTCATGTACAA 59.623 34.615 0.00 0.00 42.70 2.41
94 95 6.540438 TTAGTCCTCGAGTATTCACCAAAT 57.460 37.500 12.31 0.00 0.00 2.32
224 225 1.086696 CCTGACGTCGGATGCAAAAT 58.913 50.000 26.01 0.00 0.00 1.82
340 349 7.970061 GCATTATTTCTTGCATGAGTAGTTCAA 59.030 33.333 0.00 0.00 39.77 2.69
620 630 0.750249 TTCTTCACGTCCTGCTCACA 59.250 50.000 0.00 0.00 0.00 3.58
693 705 2.744318 TTATGTGTGCCCCGTGCG 60.744 61.111 0.00 0.00 45.60 5.34
694 706 3.538785 TTATGTGTGCCCCGTGCGT 62.539 57.895 0.00 0.00 45.60 5.24
695 707 2.168666 TTATGTGTGCCCCGTGCGTA 62.169 55.000 0.00 0.00 45.60 4.42
696 708 2.168666 TATGTGTGCCCCGTGCGTAA 62.169 55.000 0.00 0.00 45.60 3.18
697 709 2.744709 GTGTGCCCCGTGCGTAAT 60.745 61.111 0.00 0.00 45.60 1.89
698 710 2.032834 TGTGCCCCGTGCGTAATT 59.967 55.556 0.00 0.00 45.60 1.40
699 711 2.036006 TGTGCCCCGTGCGTAATTC 61.036 57.895 0.00 0.00 45.60 2.17
700 712 2.036006 GTGCCCCGTGCGTAATTCA 61.036 57.895 0.00 0.00 45.60 2.57
701 713 2.036006 TGCCCCGTGCGTAATTCAC 61.036 57.895 0.00 0.00 45.60 3.18
702 714 2.757056 GCCCCGTGCGTAATTCACC 61.757 63.158 0.00 0.00 0.00 4.02
703 715 1.078708 CCCCGTGCGTAATTCACCT 60.079 57.895 0.00 0.00 0.00 4.00
704 716 0.176219 CCCCGTGCGTAATTCACCTA 59.824 55.000 0.00 0.00 0.00 3.08
705 717 1.567504 CCCGTGCGTAATTCACCTAG 58.432 55.000 0.00 0.00 0.00 3.02
706 718 1.134907 CCCGTGCGTAATTCACCTAGT 60.135 52.381 0.00 0.00 0.00 2.57
707 719 2.099592 CCCGTGCGTAATTCACCTAGTA 59.900 50.000 0.00 0.00 0.00 1.82
708 720 3.111098 CCGTGCGTAATTCACCTAGTAC 58.889 50.000 0.00 0.00 0.00 2.73
709 721 3.181493 CCGTGCGTAATTCACCTAGTACT 60.181 47.826 0.00 0.00 0.00 2.73
710 722 3.789756 CGTGCGTAATTCACCTAGTACTG 59.210 47.826 5.39 0.00 0.00 2.74
711 723 4.673580 CGTGCGTAATTCACCTAGTACTGT 60.674 45.833 5.39 0.00 0.00 3.55
712 724 4.797349 GTGCGTAATTCACCTAGTACTGTC 59.203 45.833 5.39 0.00 0.00 3.51
713 725 4.460034 TGCGTAATTCACCTAGTACTGTCA 59.540 41.667 5.39 0.00 0.00 3.58
714 726 5.047872 TGCGTAATTCACCTAGTACTGTCAA 60.048 40.000 5.39 0.00 0.00 3.18
715 727 5.865552 GCGTAATTCACCTAGTACTGTCAAA 59.134 40.000 5.39 0.00 0.00 2.69
716 728 6.366877 GCGTAATTCACCTAGTACTGTCAAAA 59.633 38.462 5.39 0.00 0.00 2.44
717 729 7.095523 GCGTAATTCACCTAGTACTGTCAAAAA 60.096 37.037 5.39 0.00 0.00 1.94
740 752 8.871686 AAAAAGCTTTGTCGAAAAGAATATGT 57.128 26.923 13.54 0.00 0.00 2.29
741 753 9.959749 AAAAAGCTTTGTCGAAAAGAATATGTA 57.040 25.926 13.54 0.00 0.00 2.29
742 754 8.950403 AAAGCTTTGTCGAAAAGAATATGTAC 57.050 30.769 11.80 0.00 0.00 2.90
743 755 7.907214 AGCTTTGTCGAAAAGAATATGTACT 57.093 32.000 18.27 5.91 0.00 2.73
744 756 8.324163 AGCTTTGTCGAAAAGAATATGTACTT 57.676 30.769 18.27 0.00 0.00 2.24
745 757 8.230486 AGCTTTGTCGAAAAGAATATGTACTTG 58.770 33.333 18.27 0.00 0.00 3.16
746 758 7.481798 GCTTTGTCGAAAAGAATATGTACTTGG 59.518 37.037 18.27 0.00 0.00 3.61
747 759 7.972832 TTGTCGAAAAGAATATGTACTTGGT 57.027 32.000 0.00 0.00 0.00 3.67
748 760 7.359262 TGTCGAAAAGAATATGTACTTGGTG 57.641 36.000 0.00 0.00 0.00 4.17
749 761 7.156000 TGTCGAAAAGAATATGTACTTGGTGA 58.844 34.615 0.00 0.00 0.00 4.02
750 762 7.330946 TGTCGAAAAGAATATGTACTTGGTGAG 59.669 37.037 0.00 0.00 0.00 3.51
751 763 6.816640 TCGAAAAGAATATGTACTTGGTGAGG 59.183 38.462 0.00 0.00 0.00 3.86
752 764 6.816640 CGAAAAGAATATGTACTTGGTGAGGA 59.183 38.462 0.00 0.00 0.00 3.71
753 765 7.495934 CGAAAAGAATATGTACTTGGTGAGGAT 59.504 37.037 0.00 0.00 0.00 3.24
754 766 9.832445 GAAAAGAATATGTACTTGGTGAGGATA 57.168 33.333 0.00 0.00 0.00 2.59
756 768 9.614792 AAAGAATATGTACTTGGTGAGGATAAC 57.385 33.333 0.00 0.00 0.00 1.89
757 769 8.319057 AGAATATGTACTTGGTGAGGATAACA 57.681 34.615 0.00 0.00 0.00 2.41
758 770 8.204836 AGAATATGTACTTGGTGAGGATAACAC 58.795 37.037 0.00 0.00 0.00 3.32
759 771 4.182693 TGTACTTGGTGAGGATAACACG 57.817 45.455 0.00 0.00 0.00 4.49
760 772 3.575256 TGTACTTGGTGAGGATAACACGT 59.425 43.478 0.00 0.00 0.00 4.49
761 773 3.764237 ACTTGGTGAGGATAACACGTT 57.236 42.857 0.00 0.00 0.00 3.99
762 774 4.081322 ACTTGGTGAGGATAACACGTTT 57.919 40.909 0.00 0.00 0.00 3.60
763 775 4.457466 ACTTGGTGAGGATAACACGTTTT 58.543 39.130 0.00 0.00 0.00 2.43
764 776 4.514066 ACTTGGTGAGGATAACACGTTTTC 59.486 41.667 0.00 0.00 0.00 2.29
775 787 4.489683 CGTTTTCGTGTTCGGCTG 57.510 55.556 0.00 0.00 38.65 4.85
776 788 1.083015 CGTTTTCGTGTTCGGCTGG 60.083 57.895 0.00 0.00 38.65 4.85
777 789 1.492319 CGTTTTCGTGTTCGGCTGGA 61.492 55.000 0.00 0.00 38.65 3.86
778 790 0.658897 GTTTTCGTGTTCGGCTGGAA 59.341 50.000 0.00 0.00 37.69 3.53
785 797 2.602267 TTCGGCTGGAACTCGGGA 60.602 61.111 0.00 0.00 0.00 5.14
786 798 2.939261 TTCGGCTGGAACTCGGGAC 61.939 63.158 0.00 0.00 0.00 4.46
787 799 3.691342 CGGCTGGAACTCGGGACA 61.691 66.667 0.00 0.00 0.00 4.02
788 800 2.047179 GGCTGGAACTCGGGACAC 60.047 66.667 0.00 0.00 0.00 3.67
789 801 2.584391 GGCTGGAACTCGGGACACT 61.584 63.158 0.00 0.00 0.00 3.55
790 802 1.374758 GCTGGAACTCGGGACACTG 60.375 63.158 0.00 0.00 0.00 3.66
791 803 1.374758 CTGGAACTCGGGACACTGC 60.375 63.158 0.00 0.00 0.00 4.40
792 804 2.099652 CTGGAACTCGGGACACTGCA 62.100 60.000 0.00 0.00 0.00 4.41
793 805 1.374758 GGAACTCGGGACACTGCAG 60.375 63.158 13.48 13.48 0.00 4.41
794 806 1.666011 GAACTCGGGACACTGCAGA 59.334 57.895 23.35 0.00 0.00 4.26
795 807 0.247736 GAACTCGGGACACTGCAGAT 59.752 55.000 23.35 7.98 0.00 2.90
796 808 0.247736 AACTCGGGACACTGCAGATC 59.752 55.000 23.35 16.85 0.00 2.75
797 809 1.226802 CTCGGGACACTGCAGATCG 60.227 63.158 23.35 15.28 0.00 3.69
798 810 1.657751 CTCGGGACACTGCAGATCGA 61.658 60.000 23.35 18.33 0.00 3.59
799 811 1.037579 TCGGGACACTGCAGATCGAT 61.038 55.000 23.35 0.00 0.00 3.59
800 812 0.179100 CGGGACACTGCAGATCGATT 60.179 55.000 23.35 0.00 0.00 3.34
801 813 1.740380 CGGGACACTGCAGATCGATTT 60.740 52.381 23.35 0.00 0.00 2.17
802 814 1.667724 GGGACACTGCAGATCGATTTG 59.332 52.381 23.35 11.44 0.00 2.32
803 815 2.621338 GGACACTGCAGATCGATTTGA 58.379 47.619 23.35 4.38 0.00 2.69
804 816 3.201290 GGACACTGCAGATCGATTTGAT 58.799 45.455 23.35 1.45 41.06 2.57
805 817 3.624861 GGACACTGCAGATCGATTTGATT 59.375 43.478 23.35 0.00 37.47 2.57
806 818 4.260538 GGACACTGCAGATCGATTTGATTC 60.261 45.833 23.35 7.02 37.47 2.52
807 819 4.256110 ACACTGCAGATCGATTTGATTCA 58.744 39.130 23.35 7.24 37.47 2.57
808 820 4.331992 ACACTGCAGATCGATTTGATTCAG 59.668 41.667 23.35 17.21 37.47 3.02
809 821 4.569564 CACTGCAGATCGATTTGATTCAGA 59.430 41.667 23.35 0.00 37.47 3.27
810 822 4.809958 ACTGCAGATCGATTTGATTCAGAG 59.190 41.667 23.35 6.95 37.47 3.35
811 823 4.124970 TGCAGATCGATTTGATTCAGAGG 58.875 43.478 19.35 0.00 37.47 3.69
812 824 3.497640 GCAGATCGATTTGATTCAGAGGG 59.502 47.826 19.35 0.00 37.47 4.30
813 825 4.741837 GCAGATCGATTTGATTCAGAGGGA 60.742 45.833 19.35 0.00 37.47 4.20
821 833 3.411454 TGATTCAGAGGGAGATCCAGT 57.589 47.619 0.47 0.00 38.24 4.00
823 835 1.769026 TTCAGAGGGAGATCCAGTCG 58.231 55.000 0.47 0.00 38.24 4.18
841 853 2.279784 GAGAGCGAGCAATCCGGG 60.280 66.667 0.00 0.00 0.00 5.73
842 854 3.077556 AGAGCGAGCAATCCGGGT 61.078 61.111 0.00 0.00 0.00 5.28
863 875 4.292178 GGAGGGAGCGGCAGATCG 62.292 72.222 1.45 0.00 32.66 3.69
915 944 4.468765 CGATCCGGATCTACTCCTAGTA 57.531 50.000 35.31 0.00 42.47 1.82
916 945 5.026038 CGATCCGGATCTACTCCTAGTAT 57.974 47.826 35.31 3.34 42.47 2.12
917 946 6.159299 CGATCCGGATCTACTCCTAGTATA 57.841 45.833 35.31 0.00 42.47 1.47
918 947 5.984926 CGATCCGGATCTACTCCTAGTATAC 59.015 48.000 35.31 10.21 42.47 1.47
919 948 6.183360 CGATCCGGATCTACTCCTAGTATACT 60.183 46.154 35.31 10.87 42.47 2.12
920 949 7.014134 CGATCCGGATCTACTCCTAGTATACTA 59.986 44.444 35.31 12.05 42.47 1.82
921 950 7.658525 TCCGGATCTACTCCTAGTATACTAG 57.341 44.000 26.74 26.74 42.47 2.57
922 951 7.188381 TCCGGATCTACTCCTAGTATACTAGT 58.812 42.308 29.55 20.60 43.34 2.57
984 1032 2.592001 CCGGCGATCGAGAGGAGA 60.592 66.667 21.57 0.00 42.43 3.71
985 1033 2.612567 CCGGCGATCGAGAGGAGAG 61.613 68.421 21.57 0.00 42.43 3.20
986 1034 2.612567 CGGCGATCGAGAGGAGAGG 61.613 68.421 21.57 0.00 42.43 3.69
987 1035 1.228003 GGCGATCGAGAGGAGAGGA 60.228 63.158 21.57 0.00 0.00 3.71
988 1036 1.234615 GGCGATCGAGAGGAGAGGAG 61.235 65.000 21.57 0.00 0.00 3.69
989 1037 1.234615 GCGATCGAGAGGAGAGGAGG 61.235 65.000 21.57 0.00 0.00 4.30
990 1038 0.605319 CGATCGAGAGGAGAGGAGGG 60.605 65.000 10.26 0.00 0.00 4.30
991 1039 0.251165 GATCGAGAGGAGAGGAGGGG 60.251 65.000 0.00 0.00 0.00 4.79
992 1040 0.699577 ATCGAGAGGAGAGGAGGGGA 60.700 60.000 0.00 0.00 0.00 4.81
993 1041 1.150536 CGAGAGGAGAGGAGGGGAG 59.849 68.421 0.00 0.00 0.00 4.30
1362 1419 1.153086 GCTAGTGGTGGAGCCCATG 60.153 63.158 0.00 0.00 36.74 3.66
1378 1435 0.396139 CATGGCCACCTTGCTATGGT 60.396 55.000 8.16 0.00 43.95 3.55
1473 1530 4.162690 AAGAGGGTCATCGCGCCC 62.163 66.667 11.21 11.21 45.16 6.13
1997 2057 1.478105 GCTTCCAACCCATCCAACATC 59.522 52.381 0.00 0.00 0.00 3.06
2005 2065 2.102588 ACCCATCCAACATCGTAGTAGC 59.897 50.000 0.00 0.00 0.00 3.58
2008 2068 3.804325 CCATCCAACATCGTAGTAGCAAG 59.196 47.826 0.00 0.00 0.00 4.01
2009 2069 4.441495 CCATCCAACATCGTAGTAGCAAGA 60.441 45.833 0.00 0.00 0.00 3.02
2011 2071 4.682787 TCCAACATCGTAGTAGCAAGATG 58.317 43.478 3.12 3.12 44.22 2.90
2020 2080 9.464714 CATCGTAGTAGCAAGATGTTACTATTT 57.535 33.333 14.41 3.89 44.47 1.40
2039 2099 5.886960 ATTTAGCAGCGAAACATCTCTTT 57.113 34.783 2.42 0.00 0.00 2.52
2054 2114 6.211515 ACATCTCTTTTTCTGTCAATGTTGC 58.788 36.000 0.00 0.00 0.00 4.17
2131 2191 5.245531 TCGATCATGCTAAAGTCTTTGGTT 58.754 37.500 8.14 0.00 0.00 3.67
2134 2194 7.389330 TCGATCATGCTAAAGTCTTTGGTTTTA 59.611 33.333 8.14 0.00 0.00 1.52
2141 2201 9.474920 TGCTAAAGTCTTTGGTTTTATGAATTG 57.525 29.630 8.14 0.00 0.00 2.32
2152 2212 7.259882 TGGTTTTATGAATTGCTAGCAAGATG 58.740 34.615 31.88 0.00 39.47 2.90
2155 2215 3.008835 TGAATTGCTAGCAAGATGCCT 57.991 42.857 31.88 14.14 46.52 4.75
2159 2219 0.325933 TGCTAGCAAGATGCCTGTGT 59.674 50.000 16.84 0.00 46.52 3.72
2168 2228 1.019673 GATGCCTGTGTGCTGTATGG 58.980 55.000 0.00 0.00 0.00 2.74
2172 2232 1.078709 CCTGTGTGCTGTATGGAACG 58.921 55.000 0.00 0.00 0.00 3.95
2173 2233 1.608025 CCTGTGTGCTGTATGGAACGT 60.608 52.381 0.00 0.00 0.00 3.99
2174 2234 2.353307 CCTGTGTGCTGTATGGAACGTA 60.353 50.000 0.00 0.00 0.00 3.57
2175 2235 3.521560 CTGTGTGCTGTATGGAACGTAT 58.478 45.455 0.00 0.00 0.00 3.06
2176 2236 4.440940 CCTGTGTGCTGTATGGAACGTATA 60.441 45.833 0.00 0.00 0.00 1.47
2177 2237 5.074584 TGTGTGCTGTATGGAACGTATAA 57.925 39.130 0.00 0.00 0.00 0.98
2178 2238 5.106442 TGTGTGCTGTATGGAACGTATAAG 58.894 41.667 0.00 0.00 0.00 1.73
2179 2239 5.107133 GTGTGCTGTATGGAACGTATAAGT 58.893 41.667 0.00 0.00 0.00 2.24
2180 2240 6.127675 TGTGTGCTGTATGGAACGTATAAGTA 60.128 38.462 0.00 0.00 0.00 2.24
2185 2245 9.506018 TGCTGTATGGAACGTATAAGTAGTATA 57.494 33.333 0.00 0.00 0.00 1.47
2231 2291 4.974399 AGGACGAATGAGGAAAAGTCTTT 58.026 39.130 0.00 0.00 0.00 2.52
2255 2315 7.465353 TTTTGCAAATATGGAGAAGATGTGA 57.535 32.000 13.65 0.00 0.00 3.58
2260 2320 7.994911 TGCAAATATGGAGAAGATGTGAGTATT 59.005 33.333 0.00 0.00 0.00 1.89
2261 2321 8.844244 GCAAATATGGAGAAGATGTGAGTATTT 58.156 33.333 0.00 0.00 0.00 1.40
2317 2377 4.175787 GTCAGATATAAATCGGACGGCT 57.824 45.455 3.51 0.00 43.98 5.52
2328 2388 1.411246 TCGGACGGCTTATATTGCAGT 59.589 47.619 6.04 6.04 41.14 4.40
2333 2393 4.315803 GACGGCTTATATTGCAGTATGGT 58.684 43.478 11.70 2.60 38.80 3.55
2335 2395 5.235516 ACGGCTTATATTGCAGTATGGTAC 58.764 41.667 11.70 0.00 37.10 3.34
2336 2396 4.326278 CGGCTTATATTGCAGTATGGTACG 59.674 45.833 11.70 7.63 35.86 3.67
2351 2411 1.396996 GGTACGCACACCATCATCAAC 59.603 52.381 0.00 0.00 38.55 3.18
2359 2419 3.189910 CACACCATCATCAACAACTCTGG 59.810 47.826 0.00 0.00 0.00 3.86
2541 2607 3.543112 TTTTTCCAACACCCCCTCC 57.457 52.632 0.00 0.00 0.00 4.30
2542 2608 0.105401 TTTTTCCAACACCCCCTCCC 60.105 55.000 0.00 0.00 0.00 4.30
2543 2609 2.026208 TTTTCCAACACCCCCTCCCC 62.026 60.000 0.00 0.00 0.00 4.81
2566 2632 4.082571 CCTCATCAAGAAAAGAAACCGCAT 60.083 41.667 0.00 0.00 0.00 4.73
2590 2656 6.329496 TGTCTTCCTCATCAACAACAAAAAC 58.671 36.000 0.00 0.00 0.00 2.43
2591 2657 6.152661 TGTCTTCCTCATCAACAACAAAAACT 59.847 34.615 0.00 0.00 0.00 2.66
2604 2670 9.757227 CAACAACAAAAACTAATATTTCTCCCA 57.243 29.630 0.00 0.00 0.00 4.37
2625 2691 1.616159 AAACCGGAGACAAACATGGG 58.384 50.000 9.46 0.00 0.00 4.00
2627 2693 1.131303 ACCGGAGACAAACATGGGGA 61.131 55.000 9.46 0.00 0.00 4.81
2628 2694 0.392998 CCGGAGACAAACATGGGGAG 60.393 60.000 0.00 0.00 0.00 4.30
2634 2701 0.251341 ACAAACATGGGGAGGTCTGC 60.251 55.000 0.00 0.00 0.00 4.26
2670 2737 1.541310 CCTACACCCGCTTCTGACCA 61.541 60.000 0.00 0.00 0.00 4.02
2696 2763 1.435346 CCCACCAAAACCCCTCTCCT 61.435 60.000 0.00 0.00 0.00 3.69
2780 2847 2.219674 CGCTCAATATTGAAGACGCCTC 59.780 50.000 18.47 1.54 36.64 4.70
2808 2875 0.745128 CGCGACCTCTCAGTACCTCT 60.745 60.000 0.00 0.00 0.00 3.69
2827 2894 0.824595 TGCCATTGAAGCAGCACACT 60.825 50.000 0.00 0.00 34.69 3.55
2837 2904 1.831652 GCAGCACACTGGTCTAGGGT 61.832 60.000 0.00 0.00 46.36 4.34
2923 2990 2.228059 CGGGACAGATATCTACCACGT 58.772 52.381 21.76 10.32 0.00 4.49
2924 2991 2.621998 CGGGACAGATATCTACCACGTT 59.378 50.000 21.76 0.00 0.00 3.99
2951 3018 2.624316 TGTCGTTGTCCGTCTGTATC 57.376 50.000 0.00 0.00 37.94 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.851686 ACTGTCAATAATGAATTCTTATGCCTA 57.148 29.630 7.05 0.00 37.30 3.93
68 69 5.446860 TGGTGAATACTCGAGGACTAATCT 58.553 41.667 18.41 0.00 0.00 2.40
94 95 0.476338 TGTTTACCTTGGCAGAGGCA 59.524 50.000 13.45 1.18 43.71 4.75
340 349 8.947055 AAAGTACATTTGCTTTCACAAAGAAT 57.053 26.923 0.00 0.00 42.45 2.40
538 547 8.960591 CCAAGATTGATCCAAATTTACTACTGT 58.039 33.333 0.00 0.00 0.00 3.55
614 624 7.387397 TGATTTTAATGGAAAACCAATGTGAGC 59.613 33.333 0.00 0.00 39.83 4.26
620 630 8.206126 AGGAGTGATTTTAATGGAAAACCAAT 57.794 30.769 0.00 0.00 39.83 3.16
634 644 5.278315 GCGTTGGTTTTCTAGGAGTGATTTT 60.278 40.000 0.00 0.00 0.00 1.82
638 648 2.549349 GGCGTTGGTTTTCTAGGAGTGA 60.549 50.000 0.00 0.00 0.00 3.41
715 727 8.871686 ACATATTCTTTTCGACAAAGCTTTTT 57.128 26.923 9.53 2.46 0.00 1.94
716 728 9.394477 GTACATATTCTTTTCGACAAAGCTTTT 57.606 29.630 9.53 1.05 0.00 2.27
717 729 8.784043 AGTACATATTCTTTTCGACAAAGCTTT 58.216 29.630 5.69 5.69 0.00 3.51
718 730 8.324163 AGTACATATTCTTTTCGACAAAGCTT 57.676 30.769 12.43 0.00 0.00 3.74
719 731 7.907214 AGTACATATTCTTTTCGACAAAGCT 57.093 32.000 12.43 0.00 0.00 3.74
720 732 7.481798 CCAAGTACATATTCTTTTCGACAAAGC 59.518 37.037 12.43 0.00 0.00 3.51
721 733 8.504005 ACCAAGTACATATTCTTTTCGACAAAG 58.496 33.333 11.51 11.51 0.00 2.77
722 734 8.286800 CACCAAGTACATATTCTTTTCGACAAA 58.713 33.333 0.00 0.00 0.00 2.83
723 735 7.658167 TCACCAAGTACATATTCTTTTCGACAA 59.342 33.333 0.00 0.00 0.00 3.18
724 736 7.156000 TCACCAAGTACATATTCTTTTCGACA 58.844 34.615 0.00 0.00 0.00 4.35
725 737 7.201530 CCTCACCAAGTACATATTCTTTTCGAC 60.202 40.741 0.00 0.00 0.00 4.20
726 738 6.816640 CCTCACCAAGTACATATTCTTTTCGA 59.183 38.462 0.00 0.00 0.00 3.71
727 739 6.816640 TCCTCACCAAGTACATATTCTTTTCG 59.183 38.462 0.00 0.00 0.00 3.46
728 740 8.738645 ATCCTCACCAAGTACATATTCTTTTC 57.261 34.615 0.00 0.00 0.00 2.29
730 742 9.614792 GTTATCCTCACCAAGTACATATTCTTT 57.385 33.333 0.00 0.00 0.00 2.52
731 743 8.768397 TGTTATCCTCACCAAGTACATATTCTT 58.232 33.333 0.00 0.00 0.00 2.52
732 744 8.204836 GTGTTATCCTCACCAAGTACATATTCT 58.795 37.037 0.00 0.00 0.00 2.40
733 745 7.169308 CGTGTTATCCTCACCAAGTACATATTC 59.831 40.741 0.00 0.00 32.86 1.75
734 746 6.984474 CGTGTTATCCTCACCAAGTACATATT 59.016 38.462 0.00 0.00 32.86 1.28
735 747 6.097839 ACGTGTTATCCTCACCAAGTACATAT 59.902 38.462 0.00 0.00 32.86 1.78
736 748 5.419788 ACGTGTTATCCTCACCAAGTACATA 59.580 40.000 0.00 0.00 32.86 2.29
737 749 4.222145 ACGTGTTATCCTCACCAAGTACAT 59.778 41.667 0.00 0.00 32.86 2.29
738 750 3.575256 ACGTGTTATCCTCACCAAGTACA 59.425 43.478 0.00 0.00 32.86 2.90
739 751 4.184079 ACGTGTTATCCTCACCAAGTAC 57.816 45.455 0.00 0.00 32.86 2.73
740 752 4.877378 AACGTGTTATCCTCACCAAGTA 57.123 40.909 0.00 0.00 32.86 2.24
741 753 3.764237 AACGTGTTATCCTCACCAAGT 57.236 42.857 0.00 0.00 32.86 3.16
742 754 4.377022 CGAAAACGTGTTATCCTCACCAAG 60.377 45.833 0.00 0.00 32.86 3.61
743 755 3.495377 CGAAAACGTGTTATCCTCACCAA 59.505 43.478 0.00 0.00 32.86 3.67
744 756 3.061322 CGAAAACGTGTTATCCTCACCA 58.939 45.455 0.00 0.00 32.86 4.17
745 757 3.062042 ACGAAAACGTGTTATCCTCACC 58.938 45.455 0.00 0.00 32.86 4.02
746 758 4.048820 CACGAAAACGTGTTATCCTCAC 57.951 45.455 13.40 0.00 35.39 3.51
756 768 0.653323 CAGCCGAACACGAAAACGTG 60.653 55.000 18.67 18.67 44.56 4.49
757 769 1.639534 CAGCCGAACACGAAAACGT 59.360 52.632 0.00 0.00 0.00 3.99
758 770 1.083015 CCAGCCGAACACGAAAACG 60.083 57.895 0.00 0.00 0.00 3.60
759 771 0.658897 TTCCAGCCGAACACGAAAAC 59.341 50.000 0.00 0.00 0.00 2.43
760 772 3.082165 TTCCAGCCGAACACGAAAA 57.918 47.368 0.00 0.00 0.00 2.29
761 773 4.859400 TTCCAGCCGAACACGAAA 57.141 50.000 0.00 0.00 0.00 3.46
768 780 2.602267 TCCCGAGTTCCAGCCGAA 60.602 61.111 0.00 0.00 0.00 4.30
769 781 3.379445 GTCCCGAGTTCCAGCCGA 61.379 66.667 0.00 0.00 0.00 5.54
770 782 3.691342 TGTCCCGAGTTCCAGCCG 61.691 66.667 0.00 0.00 0.00 5.52
771 783 2.047179 GTGTCCCGAGTTCCAGCC 60.047 66.667 0.00 0.00 0.00 4.85
772 784 1.374758 CAGTGTCCCGAGTTCCAGC 60.375 63.158 0.00 0.00 0.00 4.85
773 785 1.374758 GCAGTGTCCCGAGTTCCAG 60.375 63.158 0.00 0.00 0.00 3.86
774 786 2.099652 CTGCAGTGTCCCGAGTTCCA 62.100 60.000 5.25 0.00 0.00 3.53
775 787 1.374758 CTGCAGTGTCCCGAGTTCC 60.375 63.158 5.25 0.00 0.00 3.62
776 788 0.247736 ATCTGCAGTGTCCCGAGTTC 59.752 55.000 14.67 0.00 0.00 3.01
777 789 0.247736 GATCTGCAGTGTCCCGAGTT 59.752 55.000 14.67 0.00 0.00 3.01
778 790 1.893786 GATCTGCAGTGTCCCGAGT 59.106 57.895 14.67 0.00 0.00 4.18
779 791 1.226802 CGATCTGCAGTGTCCCGAG 60.227 63.158 14.67 0.00 0.00 4.63
780 792 1.037579 ATCGATCTGCAGTGTCCCGA 61.038 55.000 14.67 15.49 0.00 5.14
781 793 0.179100 AATCGATCTGCAGTGTCCCG 60.179 55.000 14.67 10.94 0.00 5.14
782 794 1.667724 CAAATCGATCTGCAGTGTCCC 59.332 52.381 14.67 0.00 0.00 4.46
783 795 2.621338 TCAAATCGATCTGCAGTGTCC 58.379 47.619 14.67 0.69 0.00 4.02
784 796 4.330894 TGAATCAAATCGATCTGCAGTGTC 59.669 41.667 14.67 12.18 31.11 3.67
785 797 4.256110 TGAATCAAATCGATCTGCAGTGT 58.744 39.130 14.67 3.62 31.11 3.55
786 798 4.569564 TCTGAATCAAATCGATCTGCAGTG 59.430 41.667 14.67 2.49 33.13 3.66
787 799 4.763073 TCTGAATCAAATCGATCTGCAGT 58.237 39.130 14.67 0.42 33.13 4.40
788 800 4.211584 CCTCTGAATCAAATCGATCTGCAG 59.788 45.833 7.63 7.63 31.11 4.41
789 801 4.124970 CCTCTGAATCAAATCGATCTGCA 58.875 43.478 0.00 0.00 31.11 4.41
790 802 3.497640 CCCTCTGAATCAAATCGATCTGC 59.502 47.826 0.00 0.00 31.11 4.26
791 803 4.953667 TCCCTCTGAATCAAATCGATCTG 58.046 43.478 0.00 0.00 31.11 2.90
792 804 4.898265 TCTCCCTCTGAATCAAATCGATCT 59.102 41.667 0.00 0.00 31.11 2.75
793 805 5.207110 TCTCCCTCTGAATCAAATCGATC 57.793 43.478 0.00 0.00 31.11 3.69
794 806 5.279910 GGATCTCCCTCTGAATCAAATCGAT 60.280 44.000 0.00 0.00 35.12 3.59
795 807 4.039730 GGATCTCCCTCTGAATCAAATCGA 59.960 45.833 0.00 0.00 0.00 3.59
796 808 4.202295 TGGATCTCCCTCTGAATCAAATCG 60.202 45.833 0.00 0.00 35.38 3.34
797 809 5.163216 ACTGGATCTCCCTCTGAATCAAATC 60.163 44.000 0.00 0.00 35.38 2.17
798 810 4.725810 ACTGGATCTCCCTCTGAATCAAAT 59.274 41.667 0.00 0.00 35.38 2.32
799 811 4.107072 ACTGGATCTCCCTCTGAATCAAA 58.893 43.478 0.00 0.00 35.38 2.69
800 812 3.708631 GACTGGATCTCCCTCTGAATCAA 59.291 47.826 0.00 0.00 35.38 2.57
801 813 3.303938 GACTGGATCTCCCTCTGAATCA 58.696 50.000 0.00 0.00 35.38 2.57
802 814 2.295909 CGACTGGATCTCCCTCTGAATC 59.704 54.545 0.00 0.00 35.38 2.52
803 815 2.315176 CGACTGGATCTCCCTCTGAAT 58.685 52.381 0.00 0.00 35.38 2.57
804 816 1.686428 CCGACTGGATCTCCCTCTGAA 60.686 57.143 0.00 0.00 37.49 3.02
805 817 0.106469 CCGACTGGATCTCCCTCTGA 60.106 60.000 0.00 0.00 37.49 3.27
806 818 0.106469 TCCGACTGGATCTCCCTCTG 60.106 60.000 0.00 0.00 40.17 3.35
807 819 0.184933 CTCCGACTGGATCTCCCTCT 59.815 60.000 0.00 0.00 45.33 3.69
808 820 0.183971 TCTCCGACTGGATCTCCCTC 59.816 60.000 0.00 0.00 45.33 4.30
809 821 0.184933 CTCTCCGACTGGATCTCCCT 59.815 60.000 0.00 0.00 45.33 4.20
810 822 1.460273 GCTCTCCGACTGGATCTCCC 61.460 65.000 0.00 0.00 45.33 4.30
811 823 1.791103 CGCTCTCCGACTGGATCTCC 61.791 65.000 0.00 0.00 45.33 3.71
812 824 0.816018 TCGCTCTCCGACTGGATCTC 60.816 60.000 0.00 0.00 45.33 2.75
813 825 0.817634 CTCGCTCTCCGACTGGATCT 60.818 60.000 0.00 0.00 45.33 2.75
821 833 2.808315 GGATTGCTCGCTCTCCGA 59.192 61.111 0.00 0.00 45.15 4.55
823 835 2.279784 CCGGATTGCTCGCTCTCC 60.280 66.667 0.00 0.00 0.00 3.71
826 838 2.125106 AACCCGGATTGCTCGCTC 60.125 61.111 0.73 0.00 0.00 5.03
846 858 4.292178 CGATCTGCCGCTCCCTCC 62.292 72.222 0.00 0.00 0.00 4.30
863 875 3.951979 AATCAGAATCGGCGACAAATC 57.048 42.857 13.76 8.75 0.00 2.17
917 946 9.577222 CTCCTCCTTAAATAAGCTACTACTAGT 57.423 37.037 0.00 0.00 32.02 2.57
918 947 9.796180 TCTCCTCCTTAAATAAGCTACTACTAG 57.204 37.037 0.00 0.00 32.02 2.57
920 949 9.304335 GATCTCCTCCTTAAATAAGCTACTACT 57.696 37.037 0.00 0.00 32.02 2.57
921 950 8.525316 GGATCTCCTCCTTAAATAAGCTACTAC 58.475 40.741 0.00 0.00 41.29 2.73
922 951 7.674772 GGGATCTCCTCCTTAAATAAGCTACTA 59.325 40.741 0.00 0.00 44.28 1.82
928 962 5.810080 ACGGGATCTCCTCCTTAAATAAG 57.190 43.478 0.00 0.00 44.28 1.73
984 1032 1.231641 CATCTCGACCTCCCCTCCT 59.768 63.158 0.00 0.00 0.00 3.69
985 1033 1.834822 CCATCTCGACCTCCCCTCC 60.835 68.421 0.00 0.00 0.00 4.30
986 1034 0.825840 CTCCATCTCGACCTCCCCTC 60.826 65.000 0.00 0.00 0.00 4.30
987 1035 1.231641 CTCCATCTCGACCTCCCCT 59.768 63.158 0.00 0.00 0.00 4.79
988 1036 0.178947 ATCTCCATCTCGACCTCCCC 60.179 60.000 0.00 0.00 0.00 4.81
989 1037 0.965439 CATCTCCATCTCGACCTCCC 59.035 60.000 0.00 0.00 0.00 4.30
990 1038 1.611491 GACATCTCCATCTCGACCTCC 59.389 57.143 0.00 0.00 0.00 4.30
991 1039 1.265635 CGACATCTCCATCTCGACCTC 59.734 57.143 0.00 0.00 0.00 3.85
992 1040 1.134068 TCGACATCTCCATCTCGACCT 60.134 52.381 0.00 0.00 30.41 3.85
993 1041 1.002251 GTCGACATCTCCATCTCGACC 60.002 57.143 11.55 0.00 45.97 4.79
1118 1172 4.148825 CCTCAAGGGCGACTCCGG 62.149 72.222 0.00 0.00 36.06 5.14
1248 1305 2.650813 GATGCGGCAGGTCGATCCTT 62.651 60.000 9.25 0.00 45.67 3.36
1372 1429 3.264897 GACGCGGCAGCACCATAG 61.265 66.667 7.34 0.00 45.49 2.23
1405 1462 1.248785 ATGTCGTAGTCGTGCCTGGT 61.249 55.000 0.00 0.00 38.33 4.00
1859 1916 3.142174 CTGAAGACCCTGAAAGTGTTCC 58.858 50.000 0.00 0.00 36.85 3.62
1997 2057 8.903723 GCTAAATAGTAACATCTTGCTACTACG 58.096 37.037 1.13 0.00 35.22 3.51
2005 2065 6.828502 TCGCTGCTAAATAGTAACATCTTG 57.171 37.500 0.00 0.00 0.00 3.02
2008 2068 7.000575 TGTTTCGCTGCTAAATAGTAACATC 57.999 36.000 2.56 0.00 0.00 3.06
2009 2069 6.978343 TGTTTCGCTGCTAAATAGTAACAT 57.022 33.333 2.56 0.00 0.00 2.71
2011 2071 7.222999 AGAGATGTTTCGCTGCTAAATAGTAAC 59.777 37.037 2.56 0.00 30.06 2.50
2012 2072 7.265673 AGAGATGTTTCGCTGCTAAATAGTAA 58.734 34.615 2.56 0.00 30.06 2.24
2013 2073 6.806751 AGAGATGTTTCGCTGCTAAATAGTA 58.193 36.000 2.56 0.00 30.06 1.82
2017 2077 5.886960 AAAGAGATGTTTCGCTGCTAAAT 57.113 34.783 2.56 0.00 31.80 1.40
2018 2078 5.689383 AAAAGAGATGTTTCGCTGCTAAA 57.311 34.783 0.00 0.00 31.80 1.85
2019 2079 5.470098 AGAAAAAGAGATGTTTCGCTGCTAA 59.530 36.000 0.00 0.00 38.50 3.09
2020 2080 4.997395 AGAAAAAGAGATGTTTCGCTGCTA 59.003 37.500 0.00 0.00 38.50 3.49
2021 2081 3.817647 AGAAAAAGAGATGTTTCGCTGCT 59.182 39.130 0.00 0.00 38.50 4.24
2022 2082 3.910767 CAGAAAAAGAGATGTTTCGCTGC 59.089 43.478 0.00 0.00 38.50 5.25
2039 2099 4.863689 CACAACAAGCAACATTGACAGAAA 59.136 37.500 0.00 0.00 34.20 2.52
2054 2114 5.689383 AAGTTACTACATGCCACAACAAG 57.311 39.130 0.00 0.00 0.00 3.16
2131 2191 5.595542 AGGCATCTTGCTAGCAATTCATAAA 59.404 36.000 29.40 5.94 44.28 1.40
2134 2194 3.318275 CAGGCATCTTGCTAGCAATTCAT 59.682 43.478 29.40 18.31 44.28 2.57
2141 2201 0.731417 CACACAGGCATCTTGCTAGC 59.269 55.000 8.10 8.10 44.28 3.42
2152 2212 0.804989 GTTCCATACAGCACACAGGC 59.195 55.000 0.00 0.00 0.00 4.85
2155 2215 3.603158 ATACGTTCCATACAGCACACA 57.397 42.857 0.00 0.00 0.00 3.72
2159 2219 6.704289 ACTACTTATACGTTCCATACAGCA 57.296 37.500 0.00 0.00 0.00 4.41
2231 2291 7.177216 ACTCACATCTTCTCCATATTTGCAAAA 59.823 33.333 17.19 6.25 0.00 2.44
2275 2335 7.235606 TCTGACGGATAGGAAGGAAATTATGAT 59.764 37.037 0.00 0.00 0.00 2.45
2280 2340 5.896073 ATCTGACGGATAGGAAGGAAATT 57.104 39.130 0.00 0.00 32.04 1.82
2281 2341 8.666129 TTATATCTGACGGATAGGAAGGAAAT 57.334 34.615 9.78 0.00 39.89 2.17
2317 2377 5.464057 GTGTGCGTACCATACTGCAATATAA 59.536 40.000 0.00 0.00 38.90 0.98
2333 2393 2.464157 TGTTGATGATGGTGTGCGTA 57.536 45.000 0.00 0.00 0.00 4.42
2335 2395 1.536766 AGTTGTTGATGATGGTGTGCG 59.463 47.619 0.00 0.00 0.00 5.34
2336 2396 2.816087 AGAGTTGTTGATGATGGTGTGC 59.184 45.455 0.00 0.00 0.00 4.57
2376 2436 5.239525 GGTGCCACTATCCTTGATGTATTTC 59.760 44.000 0.00 0.00 0.00 2.17
2382 2442 3.287867 AAGGTGCCACTATCCTTGATG 57.712 47.619 0.00 0.00 39.68 3.07
2383 2443 5.132648 TCATTAAGGTGCCACTATCCTTGAT 59.867 40.000 6.02 1.13 41.04 2.57
2384 2444 4.473196 TCATTAAGGTGCCACTATCCTTGA 59.527 41.667 6.02 0.00 41.04 3.02
2385 2445 4.780815 TCATTAAGGTGCCACTATCCTTG 58.219 43.478 6.02 0.00 41.04 3.61
2392 2455 5.016173 TGCTAAAATCATTAAGGTGCCACT 58.984 37.500 0.00 0.00 0.00 4.00
2533 2599 2.865183 CTTGATGAGGGGGAGGGGGT 62.865 65.000 0.00 0.00 0.00 4.95
2534 2600 2.044450 TTGATGAGGGGGAGGGGG 59.956 66.667 0.00 0.00 0.00 5.40
2539 2605 4.407365 GTTTCTTTTCTTGATGAGGGGGA 58.593 43.478 0.00 0.00 0.00 4.81
2541 2607 3.191371 CGGTTTCTTTTCTTGATGAGGGG 59.809 47.826 0.00 0.00 0.00 4.79
2542 2608 3.366374 GCGGTTTCTTTTCTTGATGAGGG 60.366 47.826 0.00 0.00 0.00 4.30
2543 2609 3.253188 TGCGGTTTCTTTTCTTGATGAGG 59.747 43.478 0.00 0.00 0.00 3.86
2544 2610 4.488126 TGCGGTTTCTTTTCTTGATGAG 57.512 40.909 0.00 0.00 0.00 2.90
2566 2632 6.152661 AGTTTTTGTTGTTGATGAGGAAGACA 59.847 34.615 0.00 0.00 0.00 3.41
2601 2667 2.785562 TGTTTGTCTCCGGTTTATGGG 58.214 47.619 0.00 0.00 0.00 4.00
2602 2668 3.128589 CCATGTTTGTCTCCGGTTTATGG 59.871 47.826 0.00 2.39 0.00 2.74
2604 2670 3.352648 CCCATGTTTGTCTCCGGTTTAT 58.647 45.455 0.00 0.00 0.00 1.40
2605 2671 2.553466 CCCCATGTTTGTCTCCGGTTTA 60.553 50.000 0.00 0.00 0.00 2.01
2610 2676 0.392998 CCTCCCCATGTTTGTCTCCG 60.393 60.000 0.00 0.00 0.00 4.63
2625 2691 2.766400 CGGACTCTCGCAGACCTCC 61.766 68.421 2.34 0.00 34.95 4.30
2627 2693 2.752238 CCGGACTCTCGCAGACCT 60.752 66.667 0.00 0.00 34.95 3.85
2628 2694 2.750637 TCCGGACTCTCGCAGACC 60.751 66.667 0.00 0.00 33.84 3.85
2634 2701 2.544698 GGATCGGTCCGGACTCTCG 61.545 68.421 32.52 26.44 34.13 4.04
2670 2737 2.123033 GTTTTGGTGGGCCAGGGT 60.123 61.111 6.40 0.00 46.91 4.34
2780 2847 4.253257 GAGGTCGCGTCCGCCTAG 62.253 72.222 16.59 0.00 39.77 3.02
2800 2867 1.630369 TGCTTCAATGGCAGAGGTACT 59.370 47.619 0.00 0.00 36.46 2.73
2808 2875 0.824595 AGTGTGCTGCTTCAATGGCA 60.825 50.000 0.00 0.00 38.10 4.92
2823 2890 2.283529 CGGCACCCTAGACCAGTGT 61.284 63.158 0.00 0.00 33.96 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.