>input_sequence_63406
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-------ATGGAGATGTCGACGAGCTTCCCGCTGCCTTGTCTCGCCATGGTGCACGGCGTAGGCGCCGAACACCAACAAC
CCACGGCGACGACGCTGTTCAGT------CTCGCCGGCGCGAGGCCCCTCACCGGAGTCGCCCTTGAGGAGGAGCTGAAG
AACAAATCAGTCTGCCCCACGCCGCAGGGGTGGGTGCTAG---TCCAGCACCGAGACGCCGCCGCCGCCGCCGCCACCTA
CCTGCTGGATCCGCGCAGCAGCCAAAGGATCGACCTGCCGCATCTCGCAATCCAGCAGGGCCTGATCCCCTACTGCAGCT
GCCTGCTCGCCGGCGACCCCACGGCCCCGGGGTGCCCAGTGCTAGTGGTGGAGCCCATGGCCACCTTGCTATGGTGCTGC
CGCGTCGGCGACGGCGAGTGGACCAGGCACGACTACGACATCGGGACCCTGGGAGACGAGCACTTCGTCGAGAAGAGGGT
CATCGCGCCCATCGCCGCGTGCCGGGGCAGGTTCTATTTCAACGCCGTGCCCGCCGAAACGCGCGTGCTGGAGCTGGCTC
GCCCAGGGTCGGGGGCGCCGGCGTTTAGCTCGGTCGCGACGGAGCCCGCGGAGGCCGACAGGTTCGGGCGGGCGAGGGTG
TTCATGGTGGGGACGGACGACGACGAGCTGTACAAGGTCGTGCTGCTGCATCACGGAGGGTCCTACGACGAGGCCAGGGT
CCTCAAGATGGACTTGTCGGAGCGCCGGTGGCGCCCCGTCGAGGACCTCGGCGGCCGCGCCTTCTTCGTCGCGCCCATGT
ACTTTGGCGCGTCGTGTGCGCCCACCGGCGGCCGGGTCCGGCAGGACTGCATCTACTCGTTGGTTGGAGTGGCCAGGAAC
ACTTTCAGGGTCTTCAGTCTGAAAGATGGGACTTCAGAAGTGCGCCAACTCGAAGAAGAA---GAAGAAGAGCAACCTGC
GCCGGAAACAGTCGGAAAATCGAGACCATGTTGGGTGCTTCCAACCCATCCAACATCGTAG-------------------
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>chr7B_1_TraesCS7B01G078000
ATTTGCAAGGATGATTTTAGGCATAAGAATTCATTATTGACAGTGATGCCACATAAATGTCATGTACAAGATTAGTCCTC
GAGTATTCACCAAATGCCTCTGCCAAGGTAAACAAAGTGTGAGAGCTCGGTCATGAAAAGCTTGGATTATTATTCTATTA
TCCTTTAGTGATGGTGTTTTGGATCATGAGAAGTCCATGCTTAATCCTGACGTCGGATGCAAAATAAGATATTCTATTAT
TCTTTAGTGACGGTG-------TCTTGAGTAGTCCATGCTTATTCCTGACGTCGGATGAAAACAAGATAGTTCAG-TCAT
GTGCATTATTTCTTGCATGAGTAGTTCAATTCTTTGTGAAAGCAAATGTACTTTATCACTTAGCTTCTTATCTCAGATTC
CACTCAAATTTCTGATCATTATTTCATTATATGTTAGATTTTATTTCTTGCAATAAATTTTGTGAATGGGGGAGAGTAGA
GTTGCATAGTCAAAAGAAGCTTTGCAATCTTGTAACCTGCTTAAAATAATTTGAAAATCATGTAACACAGTAGTAAATTT
GGATCAATCTTGGGTAACCTGATATATTCACCCTTGCGA-TTCATTTTTTTTCTTCACGTCCTGCTCACATTGGTTTTCC
ATTAAAATCACTCCTA--GAAAACCAACGCCAATTGATTCCCCTGCCTTATGTGTGCCCCGTGCGTAATTCACCTAGTAC
TGTCAAAAAAAGCTTTGTCGAAAAGAATATGTACTTGGTGAGGATAACACGTTTTCGTGTTCGGCTGGAACTCGGGACAC
TGCAGATCGATTTGATTCAGAGGGAGATCCAGTCGGAGAGCGAGCAATCCGGGTTCCGGAGGGAGCGGCAGATCGATTTG
TCGCCGATTCTGATTTCGATTCC-----------------CCCGATCCGGATCTACTCCTAGTATACTAGT-----AGTA
GCTTATTTAAGGAGGAGATCCCGTT--------------GTCTCTTCGACCCCGCCGGCGATCGAGAGGAGAGGAGGGGA
GGTCGAGATGGAGATGTCGACGAGCTTCCCGCTGCCTTGTCTCGCCATGGTGCACGGCGTAGGCGCCGAACACCAACAAC
CCACGGCGACGACGCTGTTCAGT------CTCGCCGGCGCGAGGCCCCTCACCGGAGTCGCCCTTGAGGAGGAGCTGAAG
AACAAATCAGTCTGCCCCACGCCGCAGGGGTGGGTGCTAG---TCCAGCACCGAGACGCCGCCGCCGCCGCCGCCACCTA
CCTGCTGGATCCGCGCAGCAGCCAAAGGATCGACCTGCCGCATCTCGCAATCCAGCAGGGCCTGATCCCCTACTGCAGCT
GCCTGCTCGCCGGCGACCCCACGGCCCCGGGGTGCCCAGTGCTAGTGGTGGAGCCCATGGCCACCTTGCTATGGTGCTGC
CGCGTCGGCGACGGCGAGTGGACCAGGCACGACTACGACATCGGGACCCTGGGAGACGAGCACTTCGTCGAGAAGAGGGT
CATCGCGCCCATCGCCGCGTGCCGGGGCAGGTTCTATTTCAACGCCGTGCCCGCCGAAACGCGCGTGCTGGAGCTGGCTC
GCCCAGGGTCGGGGGCGCCGGCGTTTAGCTCGGTCGCGACGGAGCCCGCGGAGGCCGACAGGTTCGGGCGGGCGAGGGTG
TTCATGGTGGGGACGGACGACGACGAGCTGTACAAGGTCGTGCTGCTGCATCACGGAGGGTCCTACGACGAGGCCAGGGT
CCTCAAGATGGACTTGTCGGAGCGCCGGTGGCGCCCCGTCGAGGACCTCGGCGGCCGCGCCTTCTTCGTCGCGCCCATGT
ACTTTGGCGCGTCGTGTGCGCCCACCGGCGGCCGGGTCCGGCAGGACTGCATCTACTCGTTGGTTGGAGTGGCCAGGAAC
ACTTTCAGGGTCTTCAGTCTGAAAGATGGGACTTCAGAAGTGCGCCAACTCGAAGAAGAA---GAAGAAGAGCAACCTGC
GCCGGAAACAGTCGGAAAATCGAGACCATGTTGGGTGCTTCCAACCCATCCAACATCGTAGTAGCAAGATGTTACTATTT
AGCAGCGAAACATCTCTTTTTCTGTCAATGTTGCTTGTTGTGGCATGTAGTAACTTTCATACTCCTATGTACTATGAGTT
TCGTTGCTCGATCATGCTAAAGTCTTTGGTTTTATGAATTGCTAGCAAGATGCCTGTGTGCTGTATGGAACGTATAAGTA
GTATAAGTAGTTTATCTTATGAGAAAAAAGGACGAATGAGGAAAAGTCTTTTTTGCAAATATGGAGAAGATGTGAGTATT
TTTTTTGTAAAATTATCATAATTTCCTTCCTATCCGTCAGATATAAATCGGACGGCTTATATTGCAGTATGGTACGCACA
CCATCATCAACAACTCTGGTTTTTTTATAAGAGTAGAAATACATCA---AGGATAGTGGCACCTTAATGATTTTAGCATG
GAAGAAAAGAAAATTGCTAAACAAGTAATCATTAGGTCTTGATTTCT--ATTAATTAAATGATAACCAAGCAGTAAGCAA
TCG-GAGTATTTGCTTAGCAATTTTCTTTTTTTCCAACACCCCCTCCCCCTCATCAAGAAAAGAAACCGCATGTCTTCCT
CATCAACAACAAAAACTAATATTTCTCCCATAAACCGGAGACAAACATGGGGAGG-TCTGCGAGAGTCCGGACCGATCCT
ACACCCGCTTCTGACCACCCTGGCCCACCAAAACCCCTCTCCTTTCGCCCATGCGCGTTCCCGCCCGACGCCAGCTGCCC
GCATTCATGCCACTGTAGAGCGCGCCGCTCAATATTGAAGACGCCTCTAGGCGGACGCGACCTCTCAGTACCTCTGCCAT
TGAAGCAGCACACTGGTCTAGGGTGCCGCCCGCTACGTGTCTCCGGTGTCCGCGCCTGTTCAATGCCGGAGACGCGTGAC
TGGACGGGACGGGACAGATATCTACCACGTTCGTTCAATGTCGTTGTCCGTCTGTATCATGCCATTAAGCAGGCTCGCCC
GCCGAGAAACCCCGCGCATTGATGCACC
>chr2A_1
ATTTGCAAGGATGATTTCAGGCATAAGAATTCAATATTGACAGTGATGCCACATAAATGTCATGTACAGGATTAGTCCTC
GAGTATTCACCAAACGCCTCTGCCAAGGTAAACAAAGTGTGAGAGCTCGGTCATGAAAAGCTTGGATTATTATTCTATTA
TCCTTTAGTGATGGTGTTTTGGATCATGAGAAGTCCATGCTTAATCCTGACGTCGGATGCAAAACAAGATATTCTATTGT
TCTTTAATGACGGTG-------TCTTGAGTAGTCCATGCTTATTCCTGACGTCGGATGAAAACAAGATAGTTCAGTTCAT
GTGCATTATTTCTTGCATAAGTAGTTCAGTTCTTTGTGAAAGCAAATGTACTTTATCACTTAGCTTCTTATCTCAGATTC
CACTCAAATTTCTGATCATTATTTCATTATATGTTAGATTTTATTTCTTGCAATAAATTTTGTGAATGGGGGAGAGTAGA
GTTGCATAGTCAAAAGAAGCTTTGCAATCTTGTAACCTGCTTAAAATAATTTGAAAATCATGTAACGCAGTAGTAAATTT
GGATCAATCTTGGGTAACCTGATATATTCACCCGTGCGA-TTCATTTTTTT-CTTCACGTCCTCCTCACGTTGGTTTTCC
ATTGAAACCACTCCTA--GAAAACCAACGCCAATTGATTCCCCTGCCTTATGTGTGCCCCGTGC----------------
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>chr3B_1
ATTTGCAAGGATGATTTCAGGCATAAGAATTCATTATTGACGGTGATGCCACATAAATGTCATGTACAGGATTAGTCCTC
GAGTATTTACCAAACGCCTCTGCCAAGGTAAACAAACTGTGAGAGCTCGGTCATGAAAAGCTTGGATTATTATTCTAA-A
TCCTTTAGTGATGGTGTTTTGGATTATGAGAAGTCCATGCTTAATCCCGATGTCGGATGCAAAACCAGATATTCTATTAT
CCTTTAGTGACGGTGTTTGGGATCTTGAGTAGTCCATGCTTATTCCTGACGTTGGATGAAAACAAGATAGTTCAGTTAAT
GTGCATTATTTCTTGCATGAGTAGTTCAGTTCTTTGTGAAAGCAAATGTACTTTATCAGTTAGCTTCTTATCTAAGATTC
CACTCAAATTTCTGATCATTATTTCATTATATGTTAGATTTTATTTCTTGCAATAAATTTTGTGAATGGGGGAGAGTAGA
GTTGCATAGTCAAAAGAAGCTTTGCAA-CTTGCAACCTGCTTAAAATAATTTGAAAATCATGTAATGCAGTAGTAAATTT
GGATCAATCTTGGGTAACCTGATATATTCACCCGTGCGATTTGATTTTTTTTCTTCATGTCCTCCTCATGTTGGTTTTCT
ATTGAAACCACTCCTATAGAAAACCAACGCCAATTGATTCCCCTGCCTTATGTGTGCCCCGTGC----------------
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>chr6B_1
ATTTGCATGGATGATTTCAGGCATAAGAATTCATTATTGACAGTGATGCCACATA-------------------------
-AGTATTCACCAAACGCCTCTGCCAAGGTAAACAGAGTGTGAGAGCTCAGTCATGAGAAGCTTGGATTATTATTCTATTA
TCCTTTAGTGACGGTGTTTTGGATCATGAGAAGTCCATGCTTAATCCTGACGTCGGATGCAAAACAAGATATTCTATTAT
CCTTTAGTGACGGTGTTTGGGATCTTGAGTAGTCCATGCTTATTCCTCACGTCGGATGAAAACAAGATAGTTCAGTTCAT
GTGCATTATTTCTTGCATGAGTAGTTCAGTTCTTTGTGAAAGCAAATGTACTTTATCACTTAGCTTCTTATCTCAGATTC
CACTCAAATTTCTGTTCATTATTTCATTATATGTTAGATTTTATTTCTTGCAATAAATTTTGTGAATGGGGGAGAGTAGA
GTTGCATAGTCAAAAGAAGCTTTGCAATCTTGTAG------------------------------CGCAGTAGTAAATTT
GGATCAATCTTGGGTAACCTGATATATTCACCCGTGTGA-TTCATTTTTTTTCTTCACCTCCTCCTCACGTTGGTTTTCC
ATTGAAACCACTCCTAAA-AAAACCAACGCCAATTGATTCCCCTGCCTTATGTGTGCCCCGTGC----------------
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>chr5D_815
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-------------------------GATCCAGGCAGA-AACGAGCAATCCGGACTCCTGAGGGAGCAGCGGATCTATTTG
TCGCCGATTCTGATTTCGACTCCGGCCCCGACTGGCTTCCCCCATCCGGCGGCTT---------CGACCTACTCCCAGTA
GATTATTTAAGGAGGAGATCCCGTTCTCTTTGGTTCATAGTCTCTTCGACCCCGCCGGCGATCGAGAGGAG---------
-GTCGAGATGGAGATGTCGCCGAGCTTCCTGCTGCCGTGTCTCGCCATGGTGCACGGTGTAGGCGCCGAACACCAACAAC
CCACGGCGACGATGCTGTTCAGT------CTCGCCGAACACCAACAACCCA-CGGAGTCGCCCTTGAGGAGGAGCTGAAG
AACAAATCGGTCTGCCCCACACCGCAGGGGTGGATGTTAG---TCCAGCATCGAGACGCCGCCGACA------CCACCTA
CCTGCTGGACCCGGGCAGCAGCCAGAGGATCGATCTCCCAATTCTCGCAATCCAGCAGGGCCTGATCCCGTACTGCAGCT
GCCTGCTCGCTGGCGACCCCACGGCCCCGGGGTGCCCGGTG---------------------------------------
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>chr4A_816
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--------------------------ATCCAGGCAGA-AGCGAGCAATCCAGACTCCCGAGGGAGCAGCAGATCTATTTG
TCACCGATTCTGATTTCGATTCCGGCCCCGACTGGCTTCCCCCGATCCGGTCGCTTCCGAGTTCCGACCTACTCCCGGTA
GATTATTTAAGGAGGAGATTCCGTTCTCTTTGGTTCATAGTCTCTTCGATCCCGCCGGCGATCGAGAGGAG---------
-CTCGAGATGGAGATGTCGCCGAGCTTTCCGCTGCCTTGTCTCGCCATGGTGCACGGTGTAGGTGCCAAACACCAACAAC
CCACGGCGACGACGCTGTTCAGCTTCAGCCTCGCCGGCGCGAGGCCCCTCGAGGTAGTCGCCCTTGAGGAGGAGCTGAAA
AACAAATCACTCTGCCCCACGCCGAAGGGGTGGATGCTAGTAGTCCAGCACCGAGACGCCGCCGGCA------CCACCTA
CCTGCTGGATCCGCGCAGCAGCCAGAGGATCGACCTGCCGCATCTCGATATCCAGCAGGGCCTGATCCCCTACTGCAGCT
GCCTGCTCGCCGGCGACCCCACGGCCCCGGGGTGCCCAGTGCTAGTGGTGGAGCCCATCGCCACCTTGGCATGGCACTGC
CGCGTCGGCGACGGCGAGTGGGCCAGGCACGACTACGACATCGGGACCCTGGGCGACGAGCACTTCGTCGAGAAGAGGGT
CATCGCGTCGATCGCGGCGTGCCGGGGCAGGTTCTACTTCAACGCCGTGCCCGCCGAGACGCGCGTGCTGGAGCTGGCTC
GTCCCGGGGCGGGGGCGCCGGCGTTCGGCTCGGTCGCGACGGAGCCCGCAGAGGCGGACAGGTTCGGGCGGGCGAGGGTG
TTCATGGTGGGGACGGACGACGACGAGCTGTACAAGGTCGTGCTGCTGCATCGCGGAGGGTCCTACGACGAGGCCAGGGT
CCTCAAGATGGACTTCTCGGAGCACCGGTGGCGCCCCGTCGAGGACCTCGGCGGCCGCGCCTTCTTCGTCGCGCCCATGT
ACTTTGGTGCGTCGTGTGCGCCCACCGGCGGCCGGGTCCGGCAGGACTGCATCTACTCGTTGGTTGGAGTGGCCAACAAC
ACTTTCAGGGTCTTCAGTCTGAAAGATGGGACTTCAGAAGTGCACCAACTCGAAGAT------------GAGCAACTTGC
GCCGGAAACAGTCGGAAAAGCGAGACCATGTTGGGTGCTTCCAATCCATCCAACATTGTACTAG----------------
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>chr5D_1421
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------------------------------------GACATCGGGACCCTGGGAGACGAGCACTTCGCTGAGAAGAGGGT
CATCGCACCGATCGCCGCGTGCCGGGGCAGGTTCTACTTCAACGCGGTGCCCACCGAGACGCGCGTGCTGGAGCTGGCTC
GTCCCGGGGCGCCGGCGCCGGCATTCGGCTCGGTCGCGACGGAGCCCGCGGAGGCAGACAGGTTCGGGCGGGCGAGGGTG
TTCATGGTGGCGACGGACGACGGCGAGCTGTACAAGGTCGTGCTGCTGCATCACGGAGGTTCCTACGACGAGGCCAAGGT
CCTCAAGATGGACTTCTCCGAGAGCCGGTGGCGTCCGGTCGAGGACCTCGGCGGCCGCGCCTTCTTTGTCGCGCCGATGT
ACTTTGGTGCGTCGTGTGCGCCCGGCGGCGGCCGGGTCCGGCCGGACTGCGTCTACTCGTTGGTTGGAGTGGCCAAGAAC
ACTTTCAGGGTCTTCAGTCTGAAAGATGGGACTTCGGAAGTGCGCCGGCTG------------GAAGAAGAGCAACCTGC
GCCGGAAACAGTCGGAAAATCGAGACCATGTTGGGTGCTTCCAACCCATCCAACATTGTACTAG----------------
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>chr7B_1746
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-----------------------------------------AGGACCTCGGCGGCCGCGCCTTCTTCGTCGCGCCCATGT
ACTTTGGCGCGTCGTGTGCTCCCACCGGCAGTCGGGTCCAGCAGGACTGCATCTACTCGTTGGTTGGAGTGGCCAAGAAC
ACTTTCAGGGTCTTCAGTCTGAAAGATGGGGCTTCAGAAGTGCGCCAACTCGAAGAAGAAGAAGAAGAAGAGCAACCTGC
GCCGGAGACAGTCGGAAAATCGAGACCATGTTGGGTGCTCCCAACCCATCCAAGATTCTAGTAGTAATGTCGCACTTCAA
--CAGCGAAACATCTCTTCTTCTGTCAATGTTGTTTGTTGTGGCATGTAGTAACTTTCATACTCCTATGTACTATGAGTT
TCGTTGCTCGATCATGCTAAAGTCTTTGGTCTTTTGAATTACTAGCAAGATCCCCGTGCGCTGTATGAAAC---------
GTATGAGTAGTTTATTTTATGAAAAAAAAGGACGAACAAGGAAAGGTCTTATTTGCAAATATGGAGAAGGTGTGGGTATC
-TTTTTGCAAAATTGTCATGGTTTCCTTCCTATCCGTCAGATATAAATCGGACGGCCTATATTGCAGCATGGCAGACACA
CCATCATCAAAAACTCTGTTTTTTTTATAAGAGTAAAAATATTGTATCGAGGATGGTGGCACCTTAATGATTTTAGCATG
GAAGAAAAGAAAATTGCTAAACAAGTAATCATTAGGTCTTGATTTCTGAATTAATTAAATGATAACCAAGCAGTAAGCAA
ATCAGAGTATTTGCTTAGCAATTTCCTTTTTTTCCAACCACCCCCCT---TCATCAAGAAAAGAAACCGCACGTCTTCCT
CATCAACAACAAAAATAAATATTTCTATCGCAAACTGGAGACAAACATGGAGGAGATCTGTGAGAGTCCGGACCGATCCT
ACACCCGCTTCTGACCGCCCTGGCCCACCAAAACCCCTCTCCCTTCGCCCATGCGCGTTCCCACCCGATGCCAGCTGCCC
GCATTCATGCGT-TGTAGAGCGCGCCGCTCAATATTGAAGACGCCTGTAGGCGGACGCGACCTCTCGGTACCTCCGCCAT
TGAAGCAGCGCACCGGTCTAGGGCGCCGCCCGCTACGTGTCTCCGGTGTCCGCGCCTGTTCAATGCCGGAGACGCGTGAC
TGGACGGGACGGGACAGATATCTACCACGCCCGTTCAATGTCGTTGTCCGTCTGTATGATGCCATTAAGCAGGCTCGCCC
GCCGAGAAACCCCACGCATTGATGCACC
>SNPs
-----------------S--------------------------------------------------S-----------
--------------S-----------------------------------------------------------------
----------------------------------------------------------------S---------------
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----------------------------S---------------------------------------------------
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------------------------------------------------------------------S-------------
---------------------------------S-----------------------------S-----S----------
---S---S--------------------------------------------------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-------S-S--S--------------SS---S--------S-------S-----
--------------------------------------------------SS--SSS-SSSS-SSSSSSSS---------
-S---------------------------------------------------------------------SSSSSSSSS
S------------------S-------------------------------------S----------------------
---------------------------------------------------S----------------------------
---------------------------------S------------------------------S-SSSSSSS-------
------------------------S-------------------------------------------------------
----------------------------------------------------------S---------SS----SS----
---------------------S----------------------------------------------------------
---------S--------------------------S--------------------S----------------------
-S--S---S----------------SS----------------------------S------------------------
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---------------S----------------------------------------------------------------
---------------------------------------------------------------------------S----
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--------------------------------------------------------S-------S--SS-SSS---SSSS
SS----------------S--------------S----------------------------------------------
------------------------------S--S------S----------S--S---S--------S---SSSSSSSSS
----S----------S------S-------------SS------S-----S------------------S----S----S
S------S------S----SS-----------------------------------S----------S----S-SS----
----------S-------S----------------S-----SSSS---------S-------------------------
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SSS---------------------S-------------SS----S-SSSS---------------------S--------
---------------SS---------SS-SS----S--------------S-SS------S-------------------
----------------S-------------------------S-------------------S-----S-----------
----------SSS---------------------------------S-------------------S-------S-----
---------S---S---------S--------------------------------------------------------
-----------------------------SS--------------------------S----------------------
-------------S--------------
>forward_716
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--------------------------------------------------------CCCCGTGCGTAATTCACCTA----
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>reverse_2676
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-----------------------------------CGGAGACAAACATGGGGAGG-------------------------
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