Multiple sequence alignment - TraesCS7B01G050300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G050300 chr7B 100.000 2759 0 0 1 2759 51763860 51766618 0.000000e+00 5096.0
1 TraesCS7B01G050300 chr7B 91.642 335 28 0 1421 1755 592348221 592347887 5.380000e-127 464.0
2 TraesCS7B01G050300 chr7B 90.746 335 31 0 1421 1755 591713584 591713918 5.420000e-122 448.0
3 TraesCS7B01G050300 chr7B 90.604 298 23 4 1137 1430 335833317 335833613 9.260000e-105 390.0
4 TraesCS7B01G050300 chr7B 91.429 70 5 1 1070 1138 711756124 711756055 8.130000e-16 95.3
5 TraesCS7B01G050300 chr7A 89.855 1173 74 30 1 1137 100062769 100063932 0.000000e+00 1465.0
6 TraesCS7B01G050300 chr7A 94.831 445 19 2 1421 1863 100063925 100064367 0.000000e+00 691.0
7 TraesCS7B01G050300 chr7A 81.030 738 82 27 2023 2728 100065305 100066016 4.040000e-148 534.0
8 TraesCS7B01G050300 chr7A 91.429 70 5 1 1070 1138 711583677 711583608 8.130000e-16 95.3
9 TraesCS7B01G050300 chr2A 97.561 287 3 2 1138 1420 74779787 74779501 3.190000e-134 488.0
10 TraesCS7B01G050300 chr2A 89.266 177 18 1 2 177 703640135 703640311 1.290000e-53 220.0
11 TraesCS7B01G050300 chr2A 88.344 163 16 3 10 170 417073753 417073592 2.800000e-45 193.0
12 TraesCS7B01G050300 chr2A 88.696 115 10 3 2272 2384 43142930 43143043 1.330000e-28 137.0
13 TraesCS7B01G050300 chr6A 90.265 339 33 0 1421 1759 87907006 87907344 7.010000e-121 444.0
14 TraesCS7B01G050300 chr6A 89.333 75 8 0 1064 1138 16701000 16701074 8.130000e-16 95.3
15 TraesCS7B01G050300 chr6A 85.333 75 11 0 1064 1138 16683418 16683492 8.190000e-11 78.7
16 TraesCS7B01G050300 chr5A 90.448 335 32 0 1421 1755 459542803 459543137 2.520000e-120 442.0
17 TraesCS7B01G050300 chr5A 91.608 286 19 3 1140 1420 512621810 512622095 9.260000e-105 390.0
18 TraesCS7B01G050300 chr4D 90.448 335 32 0 1421 1755 352580108 352580442 2.520000e-120 442.0
19 TraesCS7B01G050300 chr4A 90.448 335 32 0 1421 1755 112846912 112846578 2.520000e-120 442.0
20 TraesCS7B01G050300 chr4A 91.958 286 18 2 1140 1420 667225282 667224997 1.990000e-106 396.0
21 TraesCS7B01G050300 chr4A 91.579 285 20 3 1140 1420 742276502 742276786 9.260000e-105 390.0
22 TraesCS7B01G050300 chr6D 90.000 340 34 0 1421 1760 70634444 70634783 9.070000e-120 440.0
23 TraesCS7B01G050300 chr6B 90.000 340 34 0 1421 1760 145043767 145044106 9.070000e-120 440.0
24 TraesCS7B01G050300 chr6B 87.413 143 12 6 25 166 678661896 678661759 2.840000e-35 159.0
25 TraesCS7B01G050300 chr1A 80.537 596 82 17 2163 2732 267144071 267143484 7.060000e-116 427.0
26 TraesCS7B01G050300 chr3D 92.553 282 16 2 1140 1418 615094489 615094768 1.540000e-107 399.0
27 TraesCS7B01G050300 chr3D 84.848 66 8 2 301 365 535741661 535741597 6.380000e-07 65.8
28 TraesCS7B01G050300 chr7D 91.958 286 18 4 1140 1420 249490088 249490373 1.990000e-106 396.0
29 TraesCS7B01G050300 chr7D 91.429 70 5 1 1070 1138 617735754 617735685 8.130000e-16 95.3
30 TraesCS7B01G050300 chr3B 91.579 285 20 2 1140 1420 4310591 4310875 9.260000e-105 390.0
31 TraesCS7B01G050300 chr3B 88.050 159 18 1 8 165 521458981 521458823 1.300000e-43 187.0
32 TraesCS7B01G050300 chr3B 87.943 141 15 2 25 164 327849478 327849617 6.110000e-37 165.0
33 TraesCS7B01G050300 chr3B 86.806 144 18 1 26 168 222145073 222145216 2.840000e-35 159.0
34 TraesCS7B01G050300 chr3B 89.000 100 10 1 26 124 222145488 222145587 3.730000e-24 122.0
35 TraesCS7B01G050300 chr2B 91.549 284 21 3 1140 1420 71992832 71993115 3.330000e-104 388.0
36 TraesCS7B01G050300 chr2B 89.565 115 8 4 2272 2384 66556546 66556658 2.860000e-30 143.0
37 TraesCS7B01G050300 chr2B 88.421 95 10 1 2272 2365 773006453 773006547 2.250000e-21 113.0
38 TraesCS7B01G050300 chr1B 80.943 488 75 12 2272 2755 305176285 305176758 1.210000e-98 370.0
39 TraesCS7B01G050300 chr1D 79.693 522 68 22 2217 2732 211684123 211683634 2.630000e-90 342.0
40 TraesCS7B01G050300 chr2D 87.500 160 19 1 8 166 317496814 317496655 1.690000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G050300 chr7B 51763860 51766618 2758 False 5096.000000 5096 100.000 1 2759 1 chr7B.!!$F1 2758
1 TraesCS7B01G050300 chr7A 100062769 100066016 3247 False 896.666667 1465 88.572 1 2728 3 chr7A.!!$F1 2727
2 TraesCS7B01G050300 chr1A 267143484 267144071 587 True 427.000000 427 80.537 2163 2732 1 chr1A.!!$R1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
743 788 0.034477 TTCTCCGGCCTCCAAAATCC 60.034 55.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2616 3525 0.038744 TCCGAAGTAGGTCTTCCGGT 59.961 55.0 0.0 0.0 46.97 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 2.419021 GCACTTGTGCCAATGCCATAAT 60.419 45.455 14.17 0.00 36.33 1.28
69 71 3.181467 TGTGCCAATGCCATAATAAAGCC 60.181 43.478 0.00 0.00 36.33 4.35
119 122 1.098050 CCAAAGGATGTGTAGCTGCC 58.902 55.000 0.00 0.00 0.00 4.85
124 127 1.026718 GGATGTGTAGCTGCCACCAC 61.027 60.000 13.77 6.75 31.71 4.16
149 152 1.220529 CGTAGCTACCACCATGCATG 58.779 55.000 20.19 20.19 0.00 4.06
179 182 4.677378 CGCCTCTCTTTGACTTATACATCG 59.323 45.833 0.00 0.00 0.00 3.84
181 184 6.273825 GCCTCTCTTTGACTTATACATCGAA 58.726 40.000 0.00 0.00 0.00 3.71
207 210 4.576053 GTCCATCAATCGAATCATCCAACA 59.424 41.667 0.00 0.00 0.00 3.33
209 212 4.521010 CATCAATCGAATCATCCAACACG 58.479 43.478 0.00 0.00 0.00 4.49
229 241 5.068723 ACACGTGATCTCCTTACCGATAAAT 59.931 40.000 25.01 0.00 0.00 1.40
234 246 7.308408 CGTGATCTCCTTACCGATAAATCTACA 60.308 40.741 0.00 0.00 0.00 2.74
262 274 5.997129 TCAATCTTCTCTGTTAATGCACACA 59.003 36.000 0.00 0.00 0.00 3.72
264 276 4.702831 TCTTCTCTGTTAATGCACACACA 58.297 39.130 0.00 0.00 0.00 3.72
266 278 6.463360 TCTTCTCTGTTAATGCACACACATA 58.537 36.000 0.00 0.00 0.00 2.29
271 283 7.278646 TCTCTGTTAATGCACACACATATCTTC 59.721 37.037 0.00 0.00 0.00 2.87
274 286 6.602803 TGTTAATGCACACACATATCTTCCAT 59.397 34.615 0.00 0.00 0.00 3.41
292 304 7.042950 TCTTCCATACAAATTTGCATCCATTG 58.957 34.615 18.12 0.35 0.00 2.82
330 345 3.858247 AGAATACGCCAAAGGAGTACAC 58.142 45.455 1.73 0.66 40.47 2.90
334 349 1.067071 ACGCCAAAGGAGTACACTAGC 60.067 52.381 0.00 0.00 33.08 3.42
346 361 9.649316 AAGGAGTACACTAGCTTTATAGAAGAT 57.351 33.333 0.00 0.00 0.00 2.40
384 399 7.340999 ACAAAAGGTTACAACAAGGTGTAGATT 59.659 33.333 0.00 0.00 35.47 2.40
390 405 4.312443 ACAACAAGGTGTAGATTACCACG 58.688 43.478 0.00 0.00 40.74 4.94
391 406 4.039488 ACAACAAGGTGTAGATTACCACGA 59.961 41.667 0.00 0.00 40.74 4.35
393 408 5.416271 ACAAGGTGTAGATTACCACGAAT 57.584 39.130 0.00 0.00 40.74 3.34
431 474 2.061773 CGCAATATCTTAGCACTCCGG 58.938 52.381 0.00 0.00 0.00 5.14
439 482 3.674050 TAGCACTCCGGACCTCCCC 62.674 68.421 0.00 0.00 0.00 4.81
448 491 1.521141 GGACCTCCCCGCTAAAGTC 59.479 63.158 0.00 0.00 0.00 3.01
449 492 1.521141 GACCTCCCCGCTAAAGTCC 59.479 63.158 0.00 0.00 0.00 3.85
450 493 1.229400 ACCTCCCCGCTAAAGTCCA 60.229 57.895 0.00 0.00 0.00 4.02
451 494 1.221021 CCTCCCCGCTAAAGTCCAC 59.779 63.158 0.00 0.00 0.00 4.02
452 495 1.550130 CCTCCCCGCTAAAGTCCACA 61.550 60.000 0.00 0.00 0.00 4.17
453 496 0.323629 CTCCCCGCTAAAGTCCACAA 59.676 55.000 0.00 0.00 0.00 3.33
454 497 0.323629 TCCCCGCTAAAGTCCACAAG 59.676 55.000 0.00 0.00 0.00 3.16
455 498 1.305930 CCCCGCTAAAGTCCACAAGC 61.306 60.000 0.00 0.00 0.00 4.01
461 504 4.680171 GCTAAAGTCCACAAGCGTAAAT 57.320 40.909 0.00 0.00 0.00 1.40
462 505 4.648970 GCTAAAGTCCACAAGCGTAAATC 58.351 43.478 0.00 0.00 0.00 2.17
495 538 1.754234 GGACCATGCCCCACACATC 60.754 63.158 0.00 0.00 0.00 3.06
514 557 3.846180 CATATGGTGCCTGTGCCC 58.154 61.111 0.00 0.00 36.33 5.36
519 562 0.684153 ATGGTGCCTGTGCCCAATAC 60.684 55.000 0.00 0.00 39.98 1.89
523 566 2.435938 CCTGTGCCCAATACGCGT 60.436 61.111 19.17 19.17 0.00 6.01
543 586 0.725117 CCGTTCCGTTGCTTCCATAC 59.275 55.000 0.00 0.00 0.00 2.39
558 601 0.388907 CATACCGTCCGTTCCGTTGT 60.389 55.000 0.00 0.00 0.00 3.32
631 676 2.203195 TGACGCTTGGCAGTTGCT 60.203 55.556 3.88 0.00 41.70 3.91
723 768 1.360911 GGAAAACGGAGGCGCAAAA 59.639 52.632 10.83 0.00 0.00 2.44
743 788 0.034477 TTCTCCGGCCTCCAAAATCC 60.034 55.000 0.00 0.00 0.00 3.01
792 837 3.147595 CACGGATCGCTCCTCCCA 61.148 66.667 3.43 0.00 39.65 4.37
802 848 3.144120 CTCCTCCCAGACCGCATCG 62.144 68.421 0.00 0.00 0.00 3.84
803 849 3.147595 CCTCCCAGACCGCATCGA 61.148 66.667 0.00 0.00 0.00 3.59
838 884 2.361104 CCATCCCACCACCCAACG 60.361 66.667 0.00 0.00 0.00 4.10
839 885 2.753701 CATCCCACCACCCAACGA 59.246 61.111 0.00 0.00 0.00 3.85
868 914 2.202932 GATCGACAGGCGCACCAT 60.203 61.111 10.83 0.00 40.61 3.55
897 943 1.274167 TCCGCACCGTTTGAATACTCT 59.726 47.619 0.00 0.00 0.00 3.24
970 1016 4.067896 TCAGCACCAAACATCTTCTCTTC 58.932 43.478 0.00 0.00 0.00 2.87
1105 1151 3.691342 CGAGGTCCGTCAAGGCCA 61.691 66.667 5.01 0.00 40.77 5.36
1122 1168 3.003763 AGGCTCCAGTTCCCGGTC 61.004 66.667 0.00 0.00 0.00 4.79
1145 1191 3.061848 CATCGGGCGCCTGGTTTT 61.062 61.111 34.26 14.60 0.00 2.43
1146 1192 2.282887 ATCGGGCGCCTGGTTTTT 60.283 55.556 34.26 12.08 0.00 1.94
1147 1193 1.001887 ATCGGGCGCCTGGTTTTTA 60.002 52.632 34.26 15.22 0.00 1.52
1148 1194 0.609681 ATCGGGCGCCTGGTTTTTAA 60.610 50.000 34.26 14.42 0.00 1.52
1149 1195 0.609681 TCGGGCGCCTGGTTTTTAAT 60.610 50.000 34.26 0.00 0.00 1.40
1150 1196 0.245266 CGGGCGCCTGGTTTTTAATT 59.755 50.000 28.47 0.00 0.00 1.40
1151 1197 1.337354 CGGGCGCCTGGTTTTTAATTT 60.337 47.619 28.47 0.00 0.00 1.82
1152 1198 2.343101 GGGCGCCTGGTTTTTAATTTC 58.657 47.619 28.56 0.00 0.00 2.17
1153 1199 2.289133 GGGCGCCTGGTTTTTAATTTCA 60.289 45.455 28.56 0.00 0.00 2.69
1154 1200 2.993220 GGCGCCTGGTTTTTAATTTCAG 59.007 45.455 22.15 0.00 0.00 3.02
1155 1201 3.554129 GGCGCCTGGTTTTTAATTTCAGT 60.554 43.478 22.15 0.00 0.00 3.41
1156 1202 4.055360 GCGCCTGGTTTTTAATTTCAGTT 58.945 39.130 0.00 0.00 0.00 3.16
1157 1203 4.509970 GCGCCTGGTTTTTAATTTCAGTTT 59.490 37.500 0.00 0.00 0.00 2.66
1158 1204 5.333035 GCGCCTGGTTTTTAATTTCAGTTTC 60.333 40.000 0.00 0.00 0.00 2.78
1159 1205 5.751028 CGCCTGGTTTTTAATTTCAGTTTCA 59.249 36.000 0.00 0.00 0.00 2.69
1160 1206 6.074356 CGCCTGGTTTTTAATTTCAGTTTCAG 60.074 38.462 0.00 0.00 0.00 3.02
1161 1207 6.983890 GCCTGGTTTTTAATTTCAGTTTCAGA 59.016 34.615 0.00 0.00 0.00 3.27
1162 1208 7.494298 GCCTGGTTTTTAATTTCAGTTTCAGAA 59.506 33.333 0.00 0.00 0.00 3.02
1163 1209 9.377312 CCTGGTTTTTAATTTCAGTTTCAGAAA 57.623 29.630 0.00 0.00 39.11 2.52
1173 1219 8.721019 ATTTCAGTTTCAGAAAAATTTCAGCA 57.279 26.923 8.47 0.00 38.36 4.41
1174 1220 7.524294 TTCAGTTTCAGAAAAATTTCAGCAC 57.476 32.000 8.47 1.84 39.61 4.40
1175 1221 6.042143 TCAGTTTCAGAAAAATTTCAGCACC 58.958 36.000 8.47 0.00 39.61 5.01
1176 1222 5.811613 CAGTTTCAGAAAAATTTCAGCACCA 59.188 36.000 8.47 0.00 39.61 4.17
1177 1223 6.313411 CAGTTTCAGAAAAATTTCAGCACCAA 59.687 34.615 8.47 0.00 39.61 3.67
1178 1224 6.313658 AGTTTCAGAAAAATTTCAGCACCAAC 59.686 34.615 8.47 3.20 39.61 3.77
1179 1225 4.692228 TCAGAAAAATTTCAGCACCAACC 58.308 39.130 8.47 0.00 39.61 3.77
1180 1226 4.161189 TCAGAAAAATTTCAGCACCAACCA 59.839 37.500 8.47 0.00 39.61 3.67
1181 1227 4.874966 CAGAAAAATTTCAGCACCAACCAA 59.125 37.500 8.47 0.00 39.61 3.67
1182 1228 5.353678 CAGAAAAATTTCAGCACCAACCAAA 59.646 36.000 8.47 0.00 39.61 3.28
1183 1229 5.942826 AGAAAAATTTCAGCACCAACCAAAA 59.057 32.000 8.47 0.00 39.61 2.44
1184 1230 6.602803 AGAAAAATTTCAGCACCAACCAAAAT 59.397 30.769 8.47 0.00 39.61 1.82
1185 1231 6.375945 AAAATTTCAGCACCAACCAAAATC 57.624 33.333 0.00 0.00 0.00 2.17
1186 1232 4.686191 ATTTCAGCACCAACCAAAATCA 57.314 36.364 0.00 0.00 0.00 2.57
1187 1233 3.451141 TTCAGCACCAACCAAAATCAC 57.549 42.857 0.00 0.00 0.00 3.06
1188 1234 2.665165 TCAGCACCAACCAAAATCACT 58.335 42.857 0.00 0.00 0.00 3.41
1189 1235 2.361757 TCAGCACCAACCAAAATCACTG 59.638 45.455 0.00 0.00 0.00 3.66
1190 1236 2.361757 CAGCACCAACCAAAATCACTGA 59.638 45.455 0.00 0.00 0.00 3.41
1191 1237 3.030291 AGCACCAACCAAAATCACTGAA 58.970 40.909 0.00 0.00 0.00 3.02
1192 1238 3.450457 AGCACCAACCAAAATCACTGAAA 59.550 39.130 0.00 0.00 0.00 2.69
1193 1239 4.101430 AGCACCAACCAAAATCACTGAAAT 59.899 37.500 0.00 0.00 0.00 2.17
1194 1240 4.815846 GCACCAACCAAAATCACTGAAATT 59.184 37.500 0.00 0.00 0.00 1.82
1195 1241 5.050159 GCACCAACCAAAATCACTGAAATTC 60.050 40.000 0.00 0.00 0.00 2.17
1196 1242 6.047870 CACCAACCAAAATCACTGAAATTCA 58.952 36.000 0.00 0.00 0.00 2.57
1197 1243 6.538021 CACCAACCAAAATCACTGAAATTCAA 59.462 34.615 0.00 0.00 0.00 2.69
1198 1244 7.227116 CACCAACCAAAATCACTGAAATTCAAT 59.773 33.333 0.00 0.00 0.00 2.57
1199 1245 7.227116 ACCAACCAAAATCACTGAAATTCAATG 59.773 33.333 0.00 0.00 0.00 2.82
1200 1246 7.441760 CCAACCAAAATCACTGAAATTCAATGA 59.558 33.333 9.62 9.62 37.03 2.57
1201 1247 8.828644 CAACCAAAATCACTGAAATTCAATGAA 58.171 29.630 11.22 0.00 36.16 2.57
1202 1248 9.563748 AACCAAAATCACTGAAATTCAATGAAT 57.436 25.926 11.22 2.07 36.16 2.57
1203 1249 9.563748 ACCAAAATCACTGAAATTCAATGAATT 57.436 25.926 14.86 14.86 43.07 2.17
1220 1266 9.467258 TCAATGAATTTCAGTGATTTCAGTTTC 57.533 29.630 21.86 6.34 45.10 2.78
1221 1267 8.706035 CAATGAATTTCAGTGATTTCAGTTTCC 58.294 33.333 19.31 0.00 44.38 3.13
1222 1268 7.345422 TGAATTTCAGTGATTTCAGTTTCCA 57.655 32.000 12.59 0.00 0.00 3.53
1223 1269 7.954835 TGAATTTCAGTGATTTCAGTTTCCAT 58.045 30.769 12.59 0.00 0.00 3.41
1224 1270 8.423349 TGAATTTCAGTGATTTCAGTTTCCATT 58.577 29.630 12.59 0.00 0.00 3.16
1225 1271 9.264719 GAATTTCAGTGATTTCAGTTTCCATTT 57.735 29.630 10.09 0.00 0.00 2.32
1226 1272 8.822652 ATTTCAGTGATTTCAGTTTCCATTTC 57.177 30.769 0.00 0.00 0.00 2.17
1227 1273 6.957920 TCAGTGATTTCAGTTTCCATTTCA 57.042 33.333 0.00 0.00 0.00 2.69
1228 1274 6.973843 TCAGTGATTTCAGTTTCCATTTCAG 58.026 36.000 0.00 0.00 0.00 3.02
1229 1275 5.632347 CAGTGATTTCAGTTTCCATTTCAGC 59.368 40.000 0.00 0.00 0.00 4.26
1230 1276 4.925646 GTGATTTCAGTTTCCATTTCAGCC 59.074 41.667 0.00 0.00 0.00 4.85
1231 1277 4.588106 TGATTTCAGTTTCCATTTCAGCCA 59.412 37.500 0.00 0.00 0.00 4.75
1232 1278 5.070180 TGATTTCAGTTTCCATTTCAGCCAA 59.930 36.000 0.00 0.00 0.00 4.52
1233 1279 5.350504 TTTCAGTTTCCATTTCAGCCAAA 57.649 34.783 0.00 0.00 0.00 3.28
1234 1280 5.549742 TTCAGTTTCCATTTCAGCCAAAT 57.450 34.783 0.00 0.00 34.79 2.32
1243 1289 4.806640 ATTTCAGCCAAATGACCGAAAT 57.193 36.364 0.00 0.00 33.07 2.17
1244 1290 5.913137 ATTTCAGCCAAATGACCGAAATA 57.087 34.783 0.00 0.00 33.07 1.40
1245 1291 5.913137 TTTCAGCCAAATGACCGAAATAT 57.087 34.783 0.00 0.00 0.00 1.28
1246 1292 5.913137 TTCAGCCAAATGACCGAAATATT 57.087 34.783 0.00 0.00 0.00 1.28
1247 1293 5.499139 TCAGCCAAATGACCGAAATATTC 57.501 39.130 0.00 0.00 0.00 1.75
1248 1294 4.946772 TCAGCCAAATGACCGAAATATTCA 59.053 37.500 0.00 0.00 0.00 2.57
1249 1295 5.036737 CAGCCAAATGACCGAAATATTCAC 58.963 41.667 0.00 0.00 0.00 3.18
1250 1296 4.949856 AGCCAAATGACCGAAATATTCACT 59.050 37.500 0.00 0.00 0.00 3.41
1251 1297 5.418840 AGCCAAATGACCGAAATATTCACTT 59.581 36.000 0.00 0.00 0.00 3.16
1252 1298 5.516339 GCCAAATGACCGAAATATTCACTTG 59.484 40.000 0.00 0.00 0.00 3.16
1253 1299 6.624861 GCCAAATGACCGAAATATTCACTTGA 60.625 38.462 0.00 0.00 29.95 3.02
1254 1300 7.312154 CCAAATGACCGAAATATTCACTTGAA 58.688 34.615 0.00 0.00 38.56 2.69
1255 1301 7.975616 CCAAATGACCGAAATATTCACTTGAAT 59.024 33.333 9.37 9.37 45.77 2.57
1256 1302 9.357652 CAAATGACCGAAATATTCACTTGAATT 57.642 29.630 9.68 0.00 41.64 2.17
1257 1303 9.573133 AAATGACCGAAATATTCACTTGAATTC 57.427 29.630 9.68 0.00 41.64 2.17
1258 1304 7.680442 TGACCGAAATATTCACTTGAATTCA 57.320 32.000 9.68 3.38 41.64 2.57
1259 1305 8.105097 TGACCGAAATATTCACTTGAATTCAA 57.895 30.769 19.45 19.45 41.64 2.69
1260 1306 8.572185 TGACCGAAATATTCACTTGAATTCAAA 58.428 29.630 20.82 7.48 41.64 2.69
1261 1307 9.573133 GACCGAAATATTCACTTGAATTCAAAT 57.427 29.630 20.82 9.42 41.64 2.32
1262 1308 9.927668 ACCGAAATATTCACTTGAATTCAAATT 57.072 25.926 20.82 13.47 41.64 1.82
1310 1356 9.941325 TTTGAAATATATTGGAATTGTTGTGCT 57.059 25.926 0.00 0.00 0.00 4.40
1321 1367 9.941325 TTGGAATTGTTGTGCTATATTGAAATT 57.059 25.926 0.00 0.00 0.00 1.82
1322 1368 9.368674 TGGAATTGTTGTGCTATATTGAAATTG 57.631 29.630 0.00 0.00 0.00 2.32
1323 1369 8.330302 GGAATTGTTGTGCTATATTGAAATTGC 58.670 33.333 0.00 0.00 0.00 3.56
1324 1370 9.090692 GAATTGTTGTGCTATATTGAAATTGCT 57.909 29.630 0.00 0.00 0.00 3.91
1325 1371 7.815398 TTGTTGTGCTATATTGAAATTGCTG 57.185 32.000 0.00 0.00 0.00 4.41
1326 1372 7.155655 TGTTGTGCTATATTGAAATTGCTGA 57.844 32.000 0.00 0.00 0.00 4.26
1327 1373 7.600960 TGTTGTGCTATATTGAAATTGCTGAA 58.399 30.769 0.00 0.00 0.00 3.02
1328 1374 8.087136 TGTTGTGCTATATTGAAATTGCTGAAA 58.913 29.630 0.00 0.00 0.00 2.69
1329 1375 9.090692 GTTGTGCTATATTGAAATTGCTGAAAT 57.909 29.630 0.00 0.00 0.00 2.17
1339 1385 7.579589 TGAAATTGCTGAAATATTTTGACCG 57.420 32.000 1.43 0.00 0.00 4.79
1340 1386 7.374272 TGAAATTGCTGAAATATTTTGACCGA 58.626 30.769 1.43 0.00 0.00 4.69
1341 1387 7.869937 TGAAATTGCTGAAATATTTTGACCGAA 59.130 29.630 1.43 0.00 0.00 4.30
1342 1388 8.600449 AAATTGCTGAAATATTTTGACCGAAA 57.400 26.923 1.43 0.00 0.00 3.46
1343 1389 8.776376 AATTGCTGAAATATTTTGACCGAAAT 57.224 26.923 1.43 1.36 33.95 2.17
1344 1390 8.776376 ATTGCTGAAATATTTTGACCGAAATT 57.224 26.923 1.43 0.00 31.96 1.82
1345 1391 8.600449 TTGCTGAAATATTTTGACCGAAATTT 57.400 26.923 1.43 0.00 31.96 1.82
1346 1392 9.698309 TTGCTGAAATATTTTGACCGAAATTTA 57.302 25.926 1.43 0.00 31.96 1.40
1347 1393 9.698309 TGCTGAAATATTTTGACCGAAATTTAA 57.302 25.926 1.43 0.00 31.96 1.52
1359 1405 9.834628 TTGACCGAAATTTAATATTTCAGTGTC 57.165 29.630 16.40 16.80 37.76 3.67
1360 1406 9.226606 TGACCGAAATTTAATATTTCAGTGTCT 57.773 29.630 20.11 0.00 37.76 3.41
1361 1407 9.490663 GACCGAAATTTAATATTTCAGTGTCTG 57.509 33.333 16.40 0.00 37.76 3.51
1362 1408 7.968405 ACCGAAATTTAATATTTCAGTGTCTGC 59.032 33.333 16.40 0.00 37.76 4.26
1363 1409 8.184192 CCGAAATTTAATATTTCAGTGTCTGCT 58.816 33.333 16.40 0.00 37.76 4.24
1364 1410 9.003112 CGAAATTTAATATTTCAGTGTCTGCTG 57.997 33.333 16.40 0.00 37.76 4.41
1374 1420 5.213891 TCAGTGTCTGCTGAAATTACTGA 57.786 39.130 18.49 18.49 41.93 3.41
1375 1421 5.610398 TCAGTGTCTGCTGAAATTACTGAA 58.390 37.500 19.37 10.01 41.93 3.02
1376 1422 6.054941 TCAGTGTCTGCTGAAATTACTGAAA 58.945 36.000 19.37 7.04 41.93 2.69
1377 1423 6.712095 TCAGTGTCTGCTGAAATTACTGAAAT 59.288 34.615 19.37 0.00 41.93 2.17
1378 1424 7.229306 TCAGTGTCTGCTGAAATTACTGAAATT 59.771 33.333 19.37 0.00 41.93 1.82
1379 1425 7.536622 CAGTGTCTGCTGAAATTACTGAAATTC 59.463 37.037 16.51 0.00 36.76 2.17
1380 1426 7.229306 AGTGTCTGCTGAAATTACTGAAATTCA 59.771 33.333 0.00 0.00 36.76 2.57
1394 1440 6.426980 CTGAAATTCAGTGGATTTCATCGA 57.573 37.500 30.94 14.67 41.59 3.59
1395 1441 6.816134 TGAAATTCAGTGGATTTCATCGAA 57.184 33.333 28.47 11.45 38.79 3.71
1396 1442 7.213216 TGAAATTCAGTGGATTTCATCGAAA 57.787 32.000 28.47 10.83 38.79 3.46
1397 1443 7.829725 TGAAATTCAGTGGATTTCATCGAAAT 58.170 30.769 28.47 1.69 43.77 2.17
1406 1452 5.818136 GATTTCATCGAAATCCCACTGAA 57.182 39.130 15.47 0.00 46.95 3.02
1407 1453 6.194796 GATTTCATCGAAATCCCACTGAAA 57.805 37.500 15.47 8.51 46.95 2.69
1408 1454 5.627499 TTTCATCGAAATCCCACTGAAAG 57.373 39.130 3.17 0.00 42.29 2.62
1409 1455 5.711976 ATTTCATCGAAATCCCACTGAAAGT 59.288 36.000 11.02 0.51 42.81 2.66
1470 1516 4.201679 CAGCGCATCGGTACCGGA 62.202 66.667 32.80 20.02 40.25 5.14
1473 1519 3.900892 CGCATCGGTACCGGAGCT 61.901 66.667 33.17 17.67 40.25 4.09
1486 1532 1.227946 GGAGCTCCCGTCTACCTCT 59.772 63.158 23.19 0.00 0.00 3.69
1626 1672 4.399395 CTCGGGAAGCTGCTGGCA 62.399 66.667 1.35 0.00 44.79 4.92
1776 1822 2.044946 GGAGGCCCGCTGATTTGT 60.045 61.111 0.00 0.00 0.00 2.83
1820 1866 1.995484 CCTAGCGGCATCGATGTAATG 59.005 52.381 25.47 14.00 39.00 1.90
1834 1880 9.553418 CATCGATGTAATGTTTGTTGTTAATGA 57.447 29.630 17.50 0.00 0.00 2.57
1836 1882 9.952188 TCGATGTAATGTTTGTTGTTAATGAAA 57.048 25.926 0.00 0.00 0.00 2.69
1869 1915 6.043854 AGAAATCTCTGACTTTGGTACTCC 57.956 41.667 0.00 0.00 0.00 3.85
1871 1917 5.669164 AATCTCTGACTTTGGTACTCCTC 57.331 43.478 0.00 0.00 34.23 3.71
1874 1920 4.767928 TCTCTGACTTTGGTACTCCTCTTC 59.232 45.833 0.00 0.00 34.23 2.87
1875 1921 3.506455 TCTGACTTTGGTACTCCTCTTCG 59.494 47.826 0.00 0.00 34.23 3.79
1876 1922 2.029290 TGACTTTGGTACTCCTCTTCGC 60.029 50.000 0.00 0.00 34.23 4.70
1877 1923 1.067776 ACTTTGGTACTCCTCTTCGCG 60.068 52.381 0.00 0.00 34.23 5.87
1878 1924 1.201647 CTTTGGTACTCCTCTTCGCGA 59.798 52.381 3.71 3.71 34.23 5.87
1879 1925 1.250328 TTGGTACTCCTCTTCGCGAA 58.750 50.000 22.01 22.01 34.23 4.70
1880 1926 1.250328 TGGTACTCCTCTTCGCGAAA 58.750 50.000 23.54 12.59 34.23 3.46
1881 1927 1.822990 TGGTACTCCTCTTCGCGAAAT 59.177 47.619 23.54 6.79 34.23 2.17
1883 1929 2.858941 GGTACTCCTCTTCGCGAAATTC 59.141 50.000 23.54 7.31 0.00 2.17
1885 1931 2.611518 ACTCCTCTTCGCGAAATTCAG 58.388 47.619 23.54 17.41 0.00 3.02
1892 1938 2.399611 GCGAAATTCAGCGGTCGG 59.600 61.111 0.00 0.00 34.13 4.79
1893 1939 2.399611 CGAAATTCAGCGGTCGGC 59.600 61.111 0.00 0.00 44.05 5.54
1894 1940 2.791927 GAAATTCAGCGGTCGGCC 59.208 61.111 0.00 0.00 45.17 6.13
1906 2143 2.584970 TCGGCCGCATCGATTGTC 60.585 61.111 23.51 0.00 0.00 3.18
1907 2144 2.889988 CGGCCGCATCGATTGTCA 60.890 61.111 14.67 0.00 0.00 3.58
1910 2147 3.017323 CCGCATCGATTGTCAGGC 58.983 61.111 0.00 0.00 0.00 4.85
1929 2166 3.133183 AGGCGAAAGGTCTAATCCTTCTC 59.867 47.826 0.00 0.00 45.79 2.87
1930 2167 3.133183 GGCGAAAGGTCTAATCCTTCTCT 59.867 47.826 0.00 0.00 45.79 3.10
1931 2168 4.383226 GGCGAAAGGTCTAATCCTTCTCTT 60.383 45.833 0.00 0.00 45.79 2.85
1932 2169 4.806775 GCGAAAGGTCTAATCCTTCTCTTC 59.193 45.833 0.00 0.00 45.79 2.87
1933 2170 5.038033 CGAAAGGTCTAATCCTTCTCTTCG 58.962 45.833 0.00 1.60 45.79 3.79
1934 2171 4.394439 AAGGTCTAATCCTTCTCTTCGC 57.606 45.455 0.00 0.00 43.44 4.70
1953 2190 3.199071 TCGCCTCCTAAGCCTGATTTTAA 59.801 43.478 0.00 0.00 0.00 1.52
1956 2193 5.506317 CGCCTCCTAAGCCTGATTTTAATTG 60.506 44.000 0.00 0.00 0.00 2.32
1972 2209 9.914923 GATTTTAATTGTTTGGTTCAACAGAAC 57.085 29.630 0.00 0.00 40.68 3.01
1973 2210 8.833231 TTTTAATTGTTTGGTTCAACAGAACA 57.167 26.923 10.16 4.36 42.66 3.18
1974 2211 9.442047 TTTTAATTGTTTGGTTCAACAGAACAT 57.558 25.926 10.16 0.00 42.66 2.71
1975 2212 8.641499 TTAATTGTTTGGTTCAACAGAACATC 57.359 30.769 10.16 0.00 42.66 3.06
1976 2213 5.651387 TTGTTTGGTTCAACAGAACATCA 57.349 34.783 10.16 0.00 42.66 3.07
1977 2214 5.651387 TGTTTGGTTCAACAGAACATCAA 57.349 34.783 10.16 3.97 42.66 2.57
1978 2215 6.030548 TGTTTGGTTCAACAGAACATCAAA 57.969 33.333 10.16 8.91 42.66 2.69
1979 2216 6.459066 TGTTTGGTTCAACAGAACATCAAAA 58.541 32.000 10.16 3.29 42.66 2.44
1980 2217 6.589523 TGTTTGGTTCAACAGAACATCAAAAG 59.410 34.615 10.16 0.00 42.66 2.27
1981 2218 5.913137 TGGTTCAACAGAACATCAAAAGT 57.087 34.783 10.16 0.00 42.66 2.66
1982 2219 5.649557 TGGTTCAACAGAACATCAAAAGTG 58.350 37.500 10.16 0.00 42.66 3.16
1986 2844 6.060028 TCAACAGAACATCAAAAGTGCTAC 57.940 37.500 0.00 0.00 0.00 3.58
1996 2854 3.186409 TCAAAAGTGCTACTGATGAACGC 59.814 43.478 0.00 0.00 0.00 4.84
1997 2855 1.726853 AAGTGCTACTGATGAACGCC 58.273 50.000 0.00 0.00 0.00 5.68
1998 2856 0.608130 AGTGCTACTGATGAACGCCA 59.392 50.000 0.00 0.00 0.00 5.69
1999 2857 1.001974 AGTGCTACTGATGAACGCCAA 59.998 47.619 0.00 0.00 0.00 4.52
2000 2858 1.804151 GTGCTACTGATGAACGCCAAA 59.196 47.619 0.00 0.00 0.00 3.28
2001 2859 2.420022 GTGCTACTGATGAACGCCAAAT 59.580 45.455 0.00 0.00 0.00 2.32
2002 2860 3.081061 TGCTACTGATGAACGCCAAATT 58.919 40.909 0.00 0.00 0.00 1.82
2003 2861 3.505680 TGCTACTGATGAACGCCAAATTT 59.494 39.130 0.00 0.00 0.00 1.82
2004 2862 4.022416 TGCTACTGATGAACGCCAAATTTT 60.022 37.500 0.00 0.00 0.00 1.82
2005 2863 4.324402 GCTACTGATGAACGCCAAATTTTG 59.676 41.667 1.99 1.99 0.00 2.44
2006 2864 3.059166 ACTGATGAACGCCAAATTTTGC 58.941 40.909 4.19 4.19 0.00 3.68
2007 2865 3.243839 ACTGATGAACGCCAAATTTTGCT 60.244 39.130 11.97 0.00 0.00 3.91
2008 2866 3.726607 TGATGAACGCCAAATTTTGCTT 58.273 36.364 11.97 0.16 0.00 3.91
2009 2867 4.125703 TGATGAACGCCAAATTTTGCTTT 58.874 34.783 11.97 8.91 0.00 3.51
2010 2868 5.292765 TGATGAACGCCAAATTTTGCTTTA 58.707 33.333 11.97 3.85 0.00 1.85
2011 2869 5.404968 TGATGAACGCCAAATTTTGCTTTAG 59.595 36.000 11.97 0.00 0.00 1.85
2012 2870 4.054671 TGAACGCCAAATTTTGCTTTAGG 58.945 39.130 11.97 0.00 0.00 2.69
2013 2871 4.202161 TGAACGCCAAATTTTGCTTTAGGA 60.202 37.500 11.97 0.00 0.00 2.94
2014 2872 4.329462 ACGCCAAATTTTGCTTTAGGAA 57.671 36.364 11.97 0.00 0.00 3.36
2015 2873 4.306600 ACGCCAAATTTTGCTTTAGGAAG 58.693 39.130 11.97 0.00 35.92 3.46
2016 2874 4.202212 ACGCCAAATTTTGCTTTAGGAAGT 60.202 37.500 11.97 0.00 35.25 3.01
2017 2875 5.010213 ACGCCAAATTTTGCTTTAGGAAGTA 59.990 36.000 11.97 0.00 35.25 2.24
2018 2876 6.099341 CGCCAAATTTTGCTTTAGGAAGTAT 58.901 36.000 11.97 0.00 35.25 2.12
2019 2877 7.094118 ACGCCAAATTTTGCTTTAGGAAGTATA 60.094 33.333 11.97 0.00 35.25 1.47
2020 2878 7.920682 CGCCAAATTTTGCTTTAGGAAGTATAT 59.079 33.333 11.97 0.00 35.25 0.86
2057 2915 8.869897 TCAATTGTAGAAACTGAGTAATTAGCG 58.130 33.333 5.13 0.00 0.00 4.26
2140 2999 4.617253 AGATACCTGTGTGCAAGTGTTA 57.383 40.909 0.00 0.00 0.00 2.41
2144 3003 1.881973 CCTGTGTGCAAGTGTTATGCT 59.118 47.619 0.00 0.00 44.14 3.79
2247 3134 8.044060 TCATCAAAACATCTATTCCAACAGAC 57.956 34.615 0.00 0.00 0.00 3.51
2253 3140 5.111989 ACATCTATTCCAACAGACGATGTG 58.888 41.667 0.00 0.00 43.00 3.21
2254 3141 4.123497 TCTATTCCAACAGACGATGTGG 57.877 45.455 0.00 0.00 43.00 4.17
2266 3156 0.179100 CGATGTGGAGGGCACTAGTG 60.179 60.000 18.93 18.93 0.00 2.74
2267 3157 0.905357 GATGTGGAGGGCACTAGTGT 59.095 55.000 23.44 4.36 0.00 3.55
2268 3158 1.279271 GATGTGGAGGGCACTAGTGTT 59.721 52.381 23.44 10.19 0.00 3.32
2269 3159 0.396435 TGTGGAGGGCACTAGTGTTG 59.604 55.000 23.44 0.00 0.00 3.33
2270 3160 0.685097 GTGGAGGGCACTAGTGTTGA 59.315 55.000 23.44 0.48 0.00 3.18
2335 3225 6.144854 CCGCTCCACAATTTCATACATATTG 58.855 40.000 0.00 0.00 35.82 1.90
2361 3252 8.087750 GGACCAAATAACAACAAAATCATCTCA 58.912 33.333 0.00 0.00 0.00 3.27
2460 3369 4.556233 TCAATATTCGAAGATGGTAGCCG 58.444 43.478 5.96 0.00 35.04 5.52
2466 3375 2.292794 GAAGATGGTAGCCGTGCCGA 62.293 60.000 0.00 0.00 0.00 5.54
2483 3392 1.039068 CGATCACAGAGGCCTCTCAT 58.961 55.000 33.06 23.01 42.34 2.90
2488 3397 0.042431 ACAGAGGCCTCTCATCCTGT 59.958 55.000 33.06 23.24 42.34 4.00
2497 3406 2.692557 CCTCTCATCCTGTCTCGTTGAT 59.307 50.000 0.00 0.00 0.00 2.57
2504 3413 2.271024 CTGTCTCGTTGATGCGTGCG 62.271 60.000 0.00 0.00 0.00 5.34
2509 3418 0.458716 TCGTTGATGCGTGCGGATAA 60.459 50.000 0.00 0.00 0.00 1.75
2514 3423 2.660258 GATGCGTGCGGATAAGGGGT 62.660 60.000 0.00 0.00 0.00 4.95
2561 3470 3.342627 CAACGCCGACCGAAGCAA 61.343 61.111 0.00 0.00 41.02 3.91
2566 3475 2.251642 GCCGACCGAAGCAACAACT 61.252 57.895 0.00 0.00 0.00 3.16
2577 3486 1.956170 CAACAACTGCTCGGCTCGT 60.956 57.895 0.00 0.00 0.00 4.18
2580 3489 1.664649 CAACTGCTCGGCTCGTTCA 60.665 57.895 0.00 0.00 0.00 3.18
2582 3491 2.811317 CTGCTCGGCTCGTTCACC 60.811 66.667 0.00 0.00 0.00 4.02
2583 3492 3.573772 CTGCTCGGCTCGTTCACCA 62.574 63.158 0.00 0.00 0.00 4.17
2631 3540 1.172175 GACGACCGGAAGACCTACTT 58.828 55.000 9.46 0.00 42.03 2.24
2641 3550 1.023513 AGACCTACTTCGGACGACGG 61.024 60.000 0.00 1.09 44.45 4.79
2691 3600 4.680237 CGCTCCGGCCAACAGACA 62.680 66.667 2.24 0.00 34.44 3.41
2697 3606 0.953471 CCGGCCAACAGACAAATCGA 60.953 55.000 2.24 0.00 0.00 3.59
2701 3610 0.796312 CCAACAGACAAATCGACCGG 59.204 55.000 0.00 0.00 0.00 5.28
2710 3619 0.608640 AAATCGACCGGAACTCTGCT 59.391 50.000 9.46 0.00 0.00 4.24
2728 3637 3.209097 CGGCGGCGGATCCAAATT 61.209 61.111 25.36 0.00 34.01 1.82
2732 3641 2.412937 GGCGGATCCAAATTGGCG 59.587 61.111 13.41 6.65 37.47 5.69
2733 3642 2.278792 GCGGATCCAAATTGGCGC 60.279 61.111 16.95 16.95 38.81 6.53
2734 3643 2.774799 GCGGATCCAAATTGGCGCT 61.775 57.895 22.09 5.06 41.28 5.92
2735 3644 1.444119 GCGGATCCAAATTGGCGCTA 61.444 55.000 22.09 0.00 41.28 4.26
2736 3645 1.238439 CGGATCCAAATTGGCGCTAT 58.762 50.000 13.41 0.00 37.47 2.97
2737 3646 1.069022 CGGATCCAAATTGGCGCTATG 60.069 52.381 13.41 0.00 37.47 2.23
2738 3647 1.270550 GGATCCAAATTGGCGCTATGG 59.729 52.381 7.64 6.43 37.47 2.74
2739 3648 2.229792 GATCCAAATTGGCGCTATGGA 58.770 47.619 15.75 15.75 43.79 3.41
2740 3649 1.679139 TCCAAATTGGCGCTATGGAG 58.321 50.000 10.21 0.00 37.47 3.86
2741 3650 0.670162 CCAAATTGGCGCTATGGAGG 59.330 55.000 7.64 0.00 32.82 4.30
2742 3651 0.670162 CAAATTGGCGCTATGGAGGG 59.330 55.000 7.64 0.00 38.65 4.30
2743 3652 0.550914 AAATTGGCGCTATGGAGGGA 59.449 50.000 7.64 0.00 37.85 4.20
2744 3653 0.179018 AATTGGCGCTATGGAGGGAC 60.179 55.000 7.64 0.00 44.09 4.46
2745 3654 2.056906 ATTGGCGCTATGGAGGGACC 62.057 60.000 7.64 0.00 43.15 4.46
2746 3655 2.844839 GGCGCTATGGAGGGACCT 60.845 66.667 7.64 0.00 37.70 3.85
2747 3656 2.737830 GCGCTATGGAGGGACCTC 59.262 66.667 9.92 9.92 42.04 3.85
2758 3667 4.083862 GGACCTCCGGTGGCTGTC 62.084 72.222 22.46 12.29 35.25 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 152 2.010497 GTCAAAGAGAGGCGATTTCCC 58.990 52.381 0.00 0.00 0.00 3.97
152 155 6.640518 TGTATAAGTCAAAGAGAGGCGATTT 58.359 36.000 0.00 0.00 0.00 2.17
158 161 8.759641 CAATTCGATGTATAAGTCAAAGAGAGG 58.240 37.037 0.00 0.00 0.00 3.69
207 210 5.535406 AGATTTATCGGTAAGGAGATCACGT 59.465 40.000 0.00 0.00 0.00 4.49
209 212 7.883217 TGTAGATTTATCGGTAAGGAGATCAC 58.117 38.462 0.00 0.00 0.00 3.06
234 246 7.175467 TGTGCATTAACAGAGAAGATTGAACAT 59.825 33.333 0.00 0.00 0.00 2.71
262 274 8.362639 GGATGCAAATTTGTATGGAAGATATGT 58.637 33.333 24.04 0.00 33.56 2.29
264 276 8.481492 TGGATGCAAATTTGTATGGAAGATAT 57.519 30.769 24.04 0.00 33.56 1.63
266 278 6.795144 TGGATGCAAATTTGTATGGAAGAT 57.205 33.333 24.04 1.40 33.56 2.40
271 283 7.184800 CATCAATGGATGCAAATTTGTATGG 57.815 36.000 24.04 9.78 44.03 2.74
312 327 3.181478 GCTAGTGTACTCCTTTGGCGTAT 60.181 47.826 0.00 0.00 0.00 3.06
362 377 6.938596 GGTAATCTACACCTTGTTGTAACCTT 59.061 38.462 0.00 0.00 31.52 3.50
365 380 6.128742 CGTGGTAATCTACACCTTGTTGTAAC 60.129 42.308 0.00 0.00 36.96 2.50
384 399 1.078988 GGGTTGCCGATTCGTGGTA 60.079 57.895 5.20 0.00 0.00 3.25
390 405 0.746923 GTAGTGGGGGTTGCCGATTC 60.747 60.000 0.00 0.00 0.00 2.52
391 406 1.205460 AGTAGTGGGGGTTGCCGATT 61.205 55.000 0.00 0.00 0.00 3.34
393 408 2.203877 AGTAGTGGGGGTTGCCGA 60.204 61.111 0.00 0.00 0.00 5.54
431 474 1.262640 TGGACTTTAGCGGGGAGGTC 61.263 60.000 0.00 0.00 0.00 3.85
448 491 2.004583 TCGAGGATTTACGCTTGTGG 57.995 50.000 0.00 0.00 0.00 4.17
449 492 4.398549 TTTTCGAGGATTTACGCTTGTG 57.601 40.909 0.00 0.00 0.00 3.33
450 493 4.693566 TCATTTTCGAGGATTTACGCTTGT 59.306 37.500 0.00 0.00 0.00 3.16
451 494 5.163854 ACTCATTTTCGAGGATTTACGCTTG 60.164 40.000 0.00 0.00 37.34 4.01
452 495 4.935808 ACTCATTTTCGAGGATTTACGCTT 59.064 37.500 0.00 0.00 37.34 4.68
453 496 4.504858 ACTCATTTTCGAGGATTTACGCT 58.495 39.130 0.00 0.00 37.34 5.07
454 497 4.859629 ACTCATTTTCGAGGATTTACGC 57.140 40.909 0.00 0.00 37.34 4.42
455 498 5.350365 TCCAACTCATTTTCGAGGATTTACG 59.650 40.000 0.00 0.00 37.34 3.18
456 499 6.403309 GGTCCAACTCATTTTCGAGGATTTAC 60.403 42.308 0.00 0.00 37.34 2.01
457 500 5.646360 GGTCCAACTCATTTTCGAGGATTTA 59.354 40.000 0.00 0.00 37.34 1.40
458 501 4.459337 GGTCCAACTCATTTTCGAGGATTT 59.541 41.667 0.00 0.00 37.34 2.17
459 502 4.010349 GGTCCAACTCATTTTCGAGGATT 58.990 43.478 0.00 0.00 37.34 3.01
460 503 3.009033 TGGTCCAACTCATTTTCGAGGAT 59.991 43.478 0.00 0.00 37.34 3.24
461 504 2.370519 TGGTCCAACTCATTTTCGAGGA 59.629 45.455 0.00 0.00 37.34 3.71
462 505 2.778299 TGGTCCAACTCATTTTCGAGG 58.222 47.619 0.00 0.00 37.34 4.63
506 549 2.435938 ACGCGTATTGGGCACAGG 60.436 61.111 11.67 0.00 0.00 4.00
530 573 1.418342 CGGACGGTATGGAAGCAACG 61.418 60.000 0.00 0.00 0.00 4.10
566 609 8.982685 GCTCAACGAAAAATATGATAGAGATCA 58.017 33.333 0.00 0.00 46.13 2.92
631 676 2.684655 GGCGTGGGTGGGTAGGTA 60.685 66.667 0.00 0.00 0.00 3.08
684 729 1.734707 CGCGTACGGTGAGGAGATTTT 60.735 52.381 18.39 0.00 34.97 1.82
718 763 0.965363 TGGAGGCCGGAGAATTTTGC 60.965 55.000 5.05 0.00 0.00 3.68
723 768 1.410224 GGATTTTGGAGGCCGGAGAAT 60.410 52.381 5.05 0.00 0.00 2.40
792 837 2.750637 ACGGTCTCGATGCGGTCT 60.751 61.111 0.00 0.00 40.11 3.85
802 848 4.131088 GAGGGCGTGGACGGTCTC 62.131 72.222 8.23 0.00 40.23 3.36
842 888 4.530857 CTGTCGATCCGTGGGGGC 62.531 72.222 0.00 0.00 34.94 5.80
844 890 4.530857 GCCTGTCGATCCGTGGGG 62.531 72.222 0.00 0.00 0.00 4.96
889 935 0.595310 GCGAGACGGCCAGAGTATTC 60.595 60.000 2.24 0.00 0.00 1.75
915 961 1.610673 GAGCTCTGGACTGGTGGGA 60.611 63.158 6.43 0.00 0.00 4.37
1062 1108 4.715523 TTCTTCCTTGGGCCGCCG 62.716 66.667 2.55 0.00 0.00 6.46
1071 1117 1.269998 CTCGACACGGACTTCTTCCTT 59.730 52.381 0.00 0.00 43.25 3.36
1083 1129 1.442184 CTTGACGGACCTCGACACG 60.442 63.158 0.00 0.00 42.46 4.49
1129 1175 0.609681 TTAAAAACCAGGCGCCCGAT 60.610 50.000 26.15 5.23 0.00 4.18
1130 1176 0.609681 ATTAAAAACCAGGCGCCCGA 60.610 50.000 26.15 0.00 0.00 5.14
1131 1177 0.245266 AATTAAAAACCAGGCGCCCG 59.755 50.000 26.15 14.30 0.00 6.13
1132 1178 2.289133 TGAAATTAAAAACCAGGCGCCC 60.289 45.455 26.15 5.07 0.00 6.13
1133 1179 2.993220 CTGAAATTAAAAACCAGGCGCC 59.007 45.455 21.89 21.89 0.00 6.53
1134 1180 3.649073 ACTGAAATTAAAAACCAGGCGC 58.351 40.909 0.00 0.00 0.00 6.53
1135 1181 5.751028 TGAAACTGAAATTAAAAACCAGGCG 59.249 36.000 0.00 0.00 0.00 5.52
1136 1182 6.983890 TCTGAAACTGAAATTAAAAACCAGGC 59.016 34.615 0.00 0.00 0.00 4.85
1137 1183 8.940768 TTCTGAAACTGAAATTAAAAACCAGG 57.059 30.769 0.00 0.00 0.00 4.45
1147 1193 9.165035 TGCTGAAATTTTTCTGAAACTGAAATT 57.835 25.926 12.42 3.83 38.07 1.82
1148 1194 8.606602 GTGCTGAAATTTTTCTGAAACTGAAAT 58.393 29.630 12.42 0.00 38.07 2.17
1149 1195 7.064490 GGTGCTGAAATTTTTCTGAAACTGAAA 59.936 33.333 12.42 0.00 38.07 2.69
1150 1196 6.534793 GGTGCTGAAATTTTTCTGAAACTGAA 59.465 34.615 12.42 0.00 38.07 3.02
1151 1197 6.042143 GGTGCTGAAATTTTTCTGAAACTGA 58.958 36.000 12.42 0.00 38.07 3.41
1152 1198 5.811613 TGGTGCTGAAATTTTTCTGAAACTG 59.188 36.000 12.42 0.00 38.07 3.16
1153 1199 5.976458 TGGTGCTGAAATTTTTCTGAAACT 58.024 33.333 12.42 0.00 38.07 2.66
1154 1200 6.456853 GGTTGGTGCTGAAATTTTTCTGAAAC 60.457 38.462 12.42 6.57 38.07 2.78
1155 1201 5.584251 GGTTGGTGCTGAAATTTTTCTGAAA 59.416 36.000 12.42 0.00 38.07 2.69
1156 1202 5.115480 GGTTGGTGCTGAAATTTTTCTGAA 58.885 37.500 12.42 1.18 38.07 3.02
1157 1203 4.161189 TGGTTGGTGCTGAAATTTTTCTGA 59.839 37.500 12.42 0.00 38.07 3.27
1158 1204 4.440880 TGGTTGGTGCTGAAATTTTTCTG 58.559 39.130 4.80 5.32 38.02 3.02
1159 1205 4.751767 TGGTTGGTGCTGAAATTTTTCT 57.248 36.364 4.80 0.00 38.02 2.52
1160 1206 5.809719 TTTGGTTGGTGCTGAAATTTTTC 57.190 34.783 0.00 0.00 37.69 2.29
1161 1207 6.376581 TGATTTTGGTTGGTGCTGAAATTTTT 59.623 30.769 0.00 0.00 0.00 1.94
1162 1208 5.884792 TGATTTTGGTTGGTGCTGAAATTTT 59.115 32.000 0.00 0.00 0.00 1.82
1163 1209 5.296531 GTGATTTTGGTTGGTGCTGAAATTT 59.703 36.000 0.00 0.00 0.00 1.82
1164 1210 4.815846 GTGATTTTGGTTGGTGCTGAAATT 59.184 37.500 0.00 0.00 0.00 1.82
1165 1211 4.101430 AGTGATTTTGGTTGGTGCTGAAAT 59.899 37.500 0.00 0.00 0.00 2.17
1166 1212 3.450457 AGTGATTTTGGTTGGTGCTGAAA 59.550 39.130 0.00 0.00 0.00 2.69
1167 1213 3.030291 AGTGATTTTGGTTGGTGCTGAA 58.970 40.909 0.00 0.00 0.00 3.02
1168 1214 2.361757 CAGTGATTTTGGTTGGTGCTGA 59.638 45.455 0.00 0.00 0.00 4.26
1169 1215 2.361757 TCAGTGATTTTGGTTGGTGCTG 59.638 45.455 0.00 0.00 0.00 4.41
1170 1216 2.665165 TCAGTGATTTTGGTTGGTGCT 58.335 42.857 0.00 0.00 0.00 4.40
1171 1217 3.451141 TTCAGTGATTTTGGTTGGTGC 57.549 42.857 0.00 0.00 0.00 5.01
1172 1218 6.047870 TGAATTTCAGTGATTTTGGTTGGTG 58.952 36.000 0.00 0.00 0.00 4.17
1173 1219 6.232581 TGAATTTCAGTGATTTTGGTTGGT 57.767 33.333 0.00 0.00 0.00 3.67
1174 1220 7.441760 TCATTGAATTTCAGTGATTTTGGTTGG 59.558 33.333 17.65 0.00 38.05 3.77
1175 1221 8.367943 TCATTGAATTTCAGTGATTTTGGTTG 57.632 30.769 17.65 0.00 38.05 3.77
1176 1222 8.961294 TTCATTGAATTTCAGTGATTTTGGTT 57.039 26.923 20.93 0.00 41.66 3.67
1177 1223 9.563748 AATTCATTGAATTTCAGTGATTTTGGT 57.436 25.926 20.93 4.82 41.66 3.67
1191 1237 9.991906 ACTGAAATCACTGAAATTCATTGAATT 57.008 25.926 17.73 17.03 43.07 2.17
1192 1238 9.991906 AACTGAAATCACTGAAATTCATTGAAT 57.008 25.926 17.73 8.74 39.09 2.57
1193 1239 9.820725 AAACTGAAATCACTGAAATTCATTGAA 57.179 25.926 17.73 0.75 39.09 2.69
1194 1240 9.467258 GAAACTGAAATCACTGAAATTCATTGA 57.533 29.630 16.46 16.46 39.76 2.57
1195 1241 8.706035 GGAAACTGAAATCACTGAAATTCATTG 58.294 33.333 6.96 6.96 31.92 2.82
1196 1242 8.423349 TGGAAACTGAAATCACTGAAATTCATT 58.577 29.630 0.00 0.00 31.92 2.57
1197 1243 7.954835 TGGAAACTGAAATCACTGAAATTCAT 58.045 30.769 0.00 0.00 31.92 2.57
1198 1244 7.345422 TGGAAACTGAAATCACTGAAATTCA 57.655 32.000 0.00 0.00 0.00 2.57
1199 1245 8.822652 AATGGAAACTGAAATCACTGAAATTC 57.177 30.769 0.00 0.00 0.00 2.17
1200 1246 9.264719 GAAATGGAAACTGAAATCACTGAAATT 57.735 29.630 0.00 0.00 0.00 1.82
1201 1247 8.423349 TGAAATGGAAACTGAAATCACTGAAAT 58.577 29.630 0.00 0.00 0.00 2.17
1202 1248 7.780064 TGAAATGGAAACTGAAATCACTGAAA 58.220 30.769 0.00 0.00 0.00 2.69
1203 1249 7.345422 TGAAATGGAAACTGAAATCACTGAA 57.655 32.000 0.00 0.00 0.00 3.02
1204 1250 6.515531 GCTGAAATGGAAACTGAAATCACTGA 60.516 38.462 0.00 0.00 0.00 3.41
1205 1251 5.632347 GCTGAAATGGAAACTGAAATCACTG 59.368 40.000 0.00 0.00 0.00 3.66
1206 1252 5.279156 GGCTGAAATGGAAACTGAAATCACT 60.279 40.000 0.00 0.00 0.00 3.41
1207 1253 4.925646 GGCTGAAATGGAAACTGAAATCAC 59.074 41.667 0.00 0.00 0.00 3.06
1208 1254 4.588106 TGGCTGAAATGGAAACTGAAATCA 59.412 37.500 0.00 0.00 0.00 2.57
1209 1255 5.138125 TGGCTGAAATGGAAACTGAAATC 57.862 39.130 0.00 0.00 0.00 2.17
1210 1256 5.549742 TTGGCTGAAATGGAAACTGAAAT 57.450 34.783 0.00 0.00 0.00 2.17
1211 1257 5.350504 TTTGGCTGAAATGGAAACTGAAA 57.649 34.783 0.00 0.00 0.00 2.69
1212 1258 5.299148 CATTTGGCTGAAATGGAAACTGAA 58.701 37.500 11.68 0.00 45.06 3.02
1213 1259 4.885413 CATTTGGCTGAAATGGAAACTGA 58.115 39.130 11.68 0.00 45.06 3.41
1217 1263 8.359821 TTTCGGTCATTTGGCTGAAATGGAAA 62.360 38.462 13.66 15.05 46.47 3.13
1218 1264 6.962304 TTTCGGTCATTTGGCTGAAATGGAA 61.962 40.000 13.66 11.66 46.47 3.53
1219 1265 5.531829 TTTCGGTCATTTGGCTGAAATGGA 61.532 41.667 13.66 7.83 46.47 3.41
1220 1266 3.305950 TTTCGGTCATTTGGCTGAAATGG 60.306 43.478 13.66 6.22 46.47 3.16
1221 1267 3.911868 TTTCGGTCATTTGGCTGAAATG 58.088 40.909 13.66 12.79 46.47 2.32
1224 1270 5.417266 TGAATATTTCGGTCATTTGGCTGAA 59.583 36.000 2.35 2.35 42.66 3.02
1225 1271 4.946772 TGAATATTTCGGTCATTTGGCTGA 59.053 37.500 0.00 0.00 32.40 4.26
1226 1272 5.036737 GTGAATATTTCGGTCATTTGGCTG 58.963 41.667 0.00 0.00 0.00 4.85
1227 1273 4.949856 AGTGAATATTTCGGTCATTTGGCT 59.050 37.500 0.00 0.00 0.00 4.75
1228 1274 5.248870 AGTGAATATTTCGGTCATTTGGC 57.751 39.130 0.00 0.00 0.00 4.52
1229 1275 6.851609 TCAAGTGAATATTTCGGTCATTTGG 58.148 36.000 8.75 0.00 38.68 3.28
1230 1276 8.915871 ATTCAAGTGAATATTTCGGTCATTTG 57.084 30.769 4.71 4.16 42.48 2.32
1231 1277 9.573133 GAATTCAAGTGAATATTTCGGTCATTT 57.427 29.630 6.95 0.00 43.41 2.32
1232 1278 8.739039 TGAATTCAAGTGAATATTTCGGTCATT 58.261 29.630 5.45 0.00 43.41 2.57
1233 1279 8.279970 TGAATTCAAGTGAATATTTCGGTCAT 57.720 30.769 5.45 0.00 43.41 3.06
1234 1280 7.680442 TGAATTCAAGTGAATATTTCGGTCA 57.320 32.000 5.45 3.23 43.41 4.02
1235 1281 8.964420 TTTGAATTCAAGTGAATATTTCGGTC 57.036 30.769 19.64 0.85 43.41 4.79
1236 1282 9.927668 AATTTGAATTCAAGTGAATATTTCGGT 57.072 25.926 19.64 0.00 43.41 4.69
1284 1330 9.941325 AGCACAACAATTCCAATATATTTCAAA 57.059 25.926 0.00 0.00 0.00 2.69
1295 1341 9.941325 AATTTCAATATAGCACAACAATTCCAA 57.059 25.926 0.00 0.00 0.00 3.53
1296 1342 9.368674 CAATTTCAATATAGCACAACAATTCCA 57.631 29.630 0.00 0.00 0.00 3.53
1297 1343 8.330302 GCAATTTCAATATAGCACAACAATTCC 58.670 33.333 0.00 0.00 0.00 3.01
1298 1344 9.090692 AGCAATTTCAATATAGCACAACAATTC 57.909 29.630 0.00 0.00 0.00 2.17
1299 1345 8.875803 CAGCAATTTCAATATAGCACAACAATT 58.124 29.630 0.00 0.00 0.00 2.32
1300 1346 8.252417 TCAGCAATTTCAATATAGCACAACAAT 58.748 29.630 0.00 0.00 0.00 2.71
1301 1347 7.600960 TCAGCAATTTCAATATAGCACAACAA 58.399 30.769 0.00 0.00 0.00 2.83
1302 1348 7.155655 TCAGCAATTTCAATATAGCACAACA 57.844 32.000 0.00 0.00 0.00 3.33
1303 1349 8.464770 TTTCAGCAATTTCAATATAGCACAAC 57.535 30.769 0.00 0.00 0.00 3.32
1313 1359 8.658609 CGGTCAAAATATTTCAGCAATTTCAAT 58.341 29.630 0.10 0.00 0.00 2.57
1314 1360 7.869937 TCGGTCAAAATATTTCAGCAATTTCAA 59.130 29.630 0.10 0.00 0.00 2.69
1315 1361 7.374272 TCGGTCAAAATATTTCAGCAATTTCA 58.626 30.769 0.10 0.00 0.00 2.69
1316 1362 7.810766 TCGGTCAAAATATTTCAGCAATTTC 57.189 32.000 0.10 0.00 0.00 2.17
1317 1363 8.600449 TTTCGGTCAAAATATTTCAGCAATTT 57.400 26.923 0.10 0.00 0.00 1.82
1318 1364 8.776376 ATTTCGGTCAAAATATTTCAGCAATT 57.224 26.923 0.10 0.00 0.00 2.32
1319 1365 8.776376 AATTTCGGTCAAAATATTTCAGCAAT 57.224 26.923 0.10 0.00 0.00 3.56
1320 1366 8.600449 AAATTTCGGTCAAAATATTTCAGCAA 57.400 26.923 0.10 0.00 0.00 3.91
1321 1367 9.698309 TTAAATTTCGGTCAAAATATTTCAGCA 57.302 25.926 0.10 0.00 0.00 4.41
1337 1383 8.184192 AGCAGACACTGAAATATTAAATTTCGG 58.816 33.333 19.50 19.50 45.25 4.30
1338 1384 9.003112 CAGCAGACACTGAAATATTAAATTTCG 57.997 33.333 0.00 11.63 40.25 3.46
1352 1398 5.213891 TCAGTAATTTCAGCAGACACTGA 57.786 39.130 2.81 7.52 44.84 3.41
1353 1399 5.929697 TTCAGTAATTTCAGCAGACACTG 57.070 39.130 0.00 0.00 39.12 3.66
1354 1400 7.229306 TGAATTTCAGTAATTTCAGCAGACACT 59.771 33.333 0.00 0.00 36.59 3.55
1355 1401 7.362662 TGAATTTCAGTAATTTCAGCAGACAC 58.637 34.615 0.00 0.00 36.59 3.67
1356 1402 7.509141 TGAATTTCAGTAATTTCAGCAGACA 57.491 32.000 0.00 0.00 36.59 3.41
1371 1417 6.426980 TCGATGAAATCCACTGAATTTCAG 57.573 37.500 22.00 22.00 44.80 3.02
1372 1418 6.816134 TTCGATGAAATCCACTGAATTTCA 57.184 33.333 5.95 5.95 44.93 2.69
1373 1419 8.332777 GATTTCGATGAAATCCACTGAATTTC 57.667 34.615 17.41 0.00 46.95 2.17
1384 1430 8.099160 CACTTTCAGTGGGATTTCGATGAAATC 61.099 40.741 19.17 19.17 44.44 2.17
1385 1431 5.711976 ACTTTCAGTGGGATTTCGATGAAAT 59.288 36.000 4.54 4.54 43.77 2.17
1386 1432 5.048782 CACTTTCAGTGGGATTTCGATGAAA 60.049 40.000 6.44 6.44 42.35 2.69
1387 1433 4.455533 CACTTTCAGTGGGATTTCGATGAA 59.544 41.667 0.00 0.00 42.35 2.57
1388 1434 4.002982 CACTTTCAGTGGGATTTCGATGA 58.997 43.478 0.00 0.00 42.35 2.92
1389 1435 4.002982 TCACTTTCAGTGGGATTTCGATG 58.997 43.478 4.09 0.00 45.94 3.84
1390 1436 4.286297 TCACTTTCAGTGGGATTTCGAT 57.714 40.909 4.09 0.00 45.94 3.59
1391 1437 3.762407 TCACTTTCAGTGGGATTTCGA 57.238 42.857 4.09 0.00 45.94 3.71
1392 1438 4.829064 TTTCACTTTCAGTGGGATTTCG 57.171 40.909 4.09 0.00 45.94 3.46
1393 1439 5.163457 TGGTTTTCACTTTCAGTGGGATTTC 60.163 40.000 4.09 0.00 45.94 2.17
1394 1440 4.714308 TGGTTTTCACTTTCAGTGGGATTT 59.286 37.500 4.09 0.00 45.94 2.17
1395 1441 4.285863 TGGTTTTCACTTTCAGTGGGATT 58.714 39.130 4.09 0.00 45.94 3.01
1396 1442 3.909732 TGGTTTTCACTTTCAGTGGGAT 58.090 40.909 4.09 0.00 45.94 3.85
1397 1443 3.374042 TGGTTTTCACTTTCAGTGGGA 57.626 42.857 4.09 0.00 45.94 4.37
1398 1444 3.636300 TCATGGTTTTCACTTTCAGTGGG 59.364 43.478 4.09 0.00 45.94 4.61
1399 1445 4.916983 TCATGGTTTTCACTTTCAGTGG 57.083 40.909 4.09 0.00 45.94 4.00
1401 1447 4.216257 CCGATCATGGTTTTCACTTTCAGT 59.784 41.667 0.00 0.00 0.00 3.41
1402 1448 4.379813 CCCGATCATGGTTTTCACTTTCAG 60.380 45.833 0.00 0.00 0.00 3.02
1403 1449 3.505680 CCCGATCATGGTTTTCACTTTCA 59.494 43.478 0.00 0.00 0.00 2.69
1404 1450 3.673323 GCCCGATCATGGTTTTCACTTTC 60.673 47.826 0.00 0.00 0.00 2.62
1405 1451 2.231235 GCCCGATCATGGTTTTCACTTT 59.769 45.455 0.00 0.00 0.00 2.66
1406 1452 1.818674 GCCCGATCATGGTTTTCACTT 59.181 47.619 0.00 0.00 0.00 3.16
1407 1453 1.463674 GCCCGATCATGGTTTTCACT 58.536 50.000 0.00 0.00 0.00 3.41
1408 1454 0.098728 CGCCCGATCATGGTTTTCAC 59.901 55.000 0.00 0.00 0.00 3.18
1409 1455 1.029408 CCGCCCGATCATGGTTTTCA 61.029 55.000 0.00 0.00 0.00 2.69
1410 1456 1.029947 ACCGCCCGATCATGGTTTTC 61.030 55.000 0.00 0.00 0.00 2.29
1411 1457 0.253610 TACCGCCCGATCATGGTTTT 59.746 50.000 0.00 0.00 35.93 2.43
1412 1458 0.463116 GTACCGCCCGATCATGGTTT 60.463 55.000 0.00 0.00 35.93 3.27
1413 1459 1.145377 GTACCGCCCGATCATGGTT 59.855 57.895 0.00 0.00 35.93 3.67
1414 1460 2.803817 GGTACCGCCCGATCATGGT 61.804 63.158 0.00 0.00 38.51 3.55
1415 1461 2.030562 GGTACCGCCCGATCATGG 59.969 66.667 0.00 0.00 0.00 3.66
1416 1462 1.006102 GAGGTACCGCCCGATCATG 60.006 63.158 6.18 0.00 38.26 3.07
1417 1463 1.046472 TTGAGGTACCGCCCGATCAT 61.046 55.000 13.56 0.00 38.26 2.45
1418 1464 1.672854 CTTGAGGTACCGCCCGATCA 61.673 60.000 13.56 4.13 38.26 2.92
1419 1465 1.067582 CTTGAGGTACCGCCCGATC 59.932 63.158 13.56 1.24 38.26 3.69
1459 1505 2.521224 GGGAGCTCCGGTACCGAT 60.521 66.667 35.41 17.59 42.83 4.18
1470 1516 1.153127 CGAGAGGTAGACGGGAGCT 60.153 63.158 0.00 0.00 0.00 4.09
1486 1532 2.821366 GTACTCGAGGACGGCCGA 60.821 66.667 35.90 7.04 39.96 5.54
1593 1639 1.430228 GAGCTCCTCGTCGTTCCTC 59.570 63.158 0.87 0.00 0.00 3.71
1776 1822 5.518847 GCGAACAGCTTATTACATACTGACA 59.481 40.000 0.00 0.00 44.04 3.58
1849 1895 5.337788 AGAGGAGTACCAAAGTCAGAGATT 58.662 41.667 0.00 0.00 38.94 2.40
1856 1902 2.608268 GCGAAGAGGAGTACCAAAGTC 58.392 52.381 0.00 0.00 38.94 3.01
1857 1903 1.067776 CGCGAAGAGGAGTACCAAAGT 60.068 52.381 0.00 0.00 38.94 2.66
1858 1904 1.201647 TCGCGAAGAGGAGTACCAAAG 59.798 52.381 6.20 0.00 38.94 2.77
1859 1905 1.250328 TCGCGAAGAGGAGTACCAAA 58.750 50.000 6.20 0.00 38.94 3.28
1860 1906 1.250328 TTCGCGAAGAGGAGTACCAA 58.750 50.000 19.38 0.00 38.94 3.67
1862 1908 2.580966 ATTTCGCGAAGAGGAGTACC 57.419 50.000 22.21 0.00 0.00 3.34
1863 1909 3.508762 TGAATTTCGCGAAGAGGAGTAC 58.491 45.455 22.21 9.20 0.00 2.73
1864 1910 3.770666 CTGAATTTCGCGAAGAGGAGTA 58.229 45.455 22.21 5.55 0.00 2.59
1865 1911 2.611518 CTGAATTTCGCGAAGAGGAGT 58.388 47.619 22.21 6.26 0.00 3.85
1866 1912 1.325943 GCTGAATTTCGCGAAGAGGAG 59.674 52.381 22.21 16.62 0.00 3.69
1867 1913 1.359848 GCTGAATTTCGCGAAGAGGA 58.640 50.000 22.21 7.60 0.00 3.71
1868 1914 3.885777 GCTGAATTTCGCGAAGAGG 57.114 52.632 22.21 12.27 0.00 3.69
1875 1921 2.399611 CCGACCGCTGAATTTCGC 59.600 61.111 0.00 3.99 0.00 4.70
1876 1922 2.399611 GCCGACCGCTGAATTTCG 59.600 61.111 0.00 0.00 0.00 3.46
1877 1923 2.791927 GGCCGACCGCTGAATTTC 59.208 61.111 0.00 0.00 37.74 2.17
1887 1933 3.640000 CAATCGATGCGGCCGACC 61.640 66.667 33.48 13.46 38.97 4.79
1890 1936 2.874694 CTGACAATCGATGCGGCCG 61.875 63.158 24.05 24.05 0.00 6.13
1891 1937 2.537560 CCTGACAATCGATGCGGCC 61.538 63.158 0.00 0.00 0.00 6.13
1892 1938 3.017323 CCTGACAATCGATGCGGC 58.983 61.111 0.00 0.00 0.00 6.53
1893 1939 2.874694 CGCCTGACAATCGATGCGG 61.875 63.158 15.42 6.39 38.46 5.69
1894 1940 1.420641 TTCGCCTGACAATCGATGCG 61.421 55.000 16.68 16.68 43.05 4.73
1896 1942 1.328680 CCTTTCGCCTGACAATCGATG 59.671 52.381 0.00 0.00 31.96 3.84
1897 1943 1.066143 ACCTTTCGCCTGACAATCGAT 60.066 47.619 0.00 0.00 31.96 3.59
1898 1944 0.320374 ACCTTTCGCCTGACAATCGA 59.680 50.000 0.00 0.00 0.00 3.59
1906 2143 2.990066 AGGATTAGACCTTTCGCCTG 57.010 50.000 0.00 0.00 36.86 4.85
1934 2171 7.410120 AACAATTAAAATCAGGCTTAGGAGG 57.590 36.000 0.00 0.00 0.00 4.30
1972 2209 5.319139 CGTTCATCAGTAGCACTTTTGATG 58.681 41.667 13.62 13.62 45.11 3.07
1973 2210 4.142816 GCGTTCATCAGTAGCACTTTTGAT 60.143 41.667 0.00 0.00 0.00 2.57
1974 2211 3.186409 GCGTTCATCAGTAGCACTTTTGA 59.814 43.478 0.00 0.00 0.00 2.69
1975 2212 3.482786 GCGTTCATCAGTAGCACTTTTG 58.517 45.455 0.00 0.00 0.00 2.44
1976 2213 2.484264 GGCGTTCATCAGTAGCACTTTT 59.516 45.455 0.00 0.00 0.00 2.27
1977 2214 2.076863 GGCGTTCATCAGTAGCACTTT 58.923 47.619 0.00 0.00 0.00 2.66
1978 2215 1.001974 TGGCGTTCATCAGTAGCACTT 59.998 47.619 0.00 0.00 0.00 3.16
1979 2216 0.608130 TGGCGTTCATCAGTAGCACT 59.392 50.000 0.00 0.00 0.00 4.40
1980 2217 1.438651 TTGGCGTTCATCAGTAGCAC 58.561 50.000 0.00 0.00 0.00 4.40
1981 2218 2.177394 TTTGGCGTTCATCAGTAGCA 57.823 45.000 0.00 0.00 0.00 3.49
1982 2219 3.764885 AATTTGGCGTTCATCAGTAGC 57.235 42.857 0.00 0.00 0.00 3.58
1986 2844 3.319755 AGCAAAATTTGGCGTTCATCAG 58.680 40.909 11.90 0.00 34.54 2.90
2021 2879 9.300681 TCAGTTTCTACAATTGAATCAAGGAAT 57.699 29.630 13.59 0.00 0.00 3.01
2044 2902 5.530519 TTTGCAAGTCGCTAATTACTCAG 57.469 39.130 0.00 0.00 43.06 3.35
2052 2910 5.826586 TCAAGAAATTTTGCAAGTCGCTAA 58.173 33.333 0.00 0.00 43.06 3.09
2057 2915 7.880059 ATTAGCTCAAGAAATTTTGCAAGTC 57.120 32.000 0.00 0.00 0.00 3.01
2107 2965 7.154656 GCACACAGGTATCTATGATATGAACA 58.845 38.462 0.00 0.00 0.00 3.18
2108 2966 7.154656 TGCACACAGGTATCTATGATATGAAC 58.845 38.462 0.00 0.00 0.00 3.18
2118 2976 4.617253 AACACTTGCACACAGGTATCTA 57.383 40.909 0.00 0.00 33.72 1.98
2121 2979 3.440173 GCATAACACTTGCACACAGGTAT 59.560 43.478 0.00 0.00 39.90 2.73
2122 2980 2.811431 GCATAACACTTGCACACAGGTA 59.189 45.455 0.00 0.00 39.90 3.08
2126 2984 4.322567 TGATAGCATAACACTTGCACACA 58.677 39.130 0.00 0.00 42.62 3.72
2129 2987 7.816945 AAAATTGATAGCATAACACTTGCAC 57.183 32.000 0.00 0.00 42.62 4.57
2166 3025 9.529823 AATGCATTTTACATCATCTATGGAGAT 57.470 29.630 5.99 0.00 43.63 2.75
2231 3116 4.509230 CCACATCGTCTGTTGGAATAGATG 59.491 45.833 1.56 1.56 35.29 2.90
2232 3117 4.405680 TCCACATCGTCTGTTGGAATAGAT 59.594 41.667 0.00 0.00 35.29 1.98
2233 3118 3.767131 TCCACATCGTCTGTTGGAATAGA 59.233 43.478 0.00 0.00 35.29 1.98
2234 3119 4.115516 CTCCACATCGTCTGTTGGAATAG 58.884 47.826 0.00 0.00 35.79 1.73
2235 3120 3.118775 CCTCCACATCGTCTGTTGGAATA 60.119 47.826 0.00 0.00 35.79 1.75
2236 3121 2.355108 CCTCCACATCGTCTGTTGGAAT 60.355 50.000 0.00 0.00 35.79 3.01
2237 3122 1.001974 CCTCCACATCGTCTGTTGGAA 59.998 52.381 0.00 0.00 35.79 3.53
2253 3140 0.391793 GCTCAACACTAGTGCCCTCC 60.392 60.000 22.90 5.32 0.00 4.30
2254 3141 0.610687 AGCTCAACACTAGTGCCCTC 59.389 55.000 22.90 8.48 0.00 4.30
2267 3157 1.421268 ACATCACCTGTTGGAGCTCAA 59.579 47.619 17.19 0.00 32.90 3.02
2268 3158 1.059098 ACATCACCTGTTGGAGCTCA 58.941 50.000 17.19 0.00 32.90 4.26
2269 3159 3.334583 TTACATCACCTGTTGGAGCTC 57.665 47.619 4.71 4.71 39.39 4.09
2270 3160 3.788227 TTTACATCACCTGTTGGAGCT 57.212 42.857 0.00 0.00 39.39 4.09
2278 3168 3.316308 GCTGCCCTATTTTACATCACCTG 59.684 47.826 0.00 0.00 0.00 4.00
2335 3225 8.087750 TGAGATGATTTTGTTGTTATTTGGTCC 58.912 33.333 0.00 0.00 0.00 4.46
2460 3369 2.512515 GGCCTCTGTGATCGGCAC 60.513 66.667 10.26 2.89 45.53 5.01
2466 3375 1.062275 AGGATGAGAGGCCTCTGTGAT 60.062 52.381 39.86 25.99 40.61 3.06
2483 3392 0.388520 CACGCATCAACGAGACAGGA 60.389 55.000 0.00 0.00 36.70 3.86
2488 3397 2.557059 ATCCGCACGCATCAACGAGA 62.557 55.000 0.00 0.00 36.70 4.04
2497 3406 2.961893 AACCCCTTATCCGCACGCA 61.962 57.895 0.00 0.00 0.00 5.24
2545 3454 3.343421 GTTGCTTCGGTCGGCGTT 61.343 61.111 6.85 0.00 0.00 4.84
2561 3470 1.664965 GAACGAGCCGAGCAGTTGT 60.665 57.895 11.90 0.00 33.49 3.32
2566 3475 3.611674 TGGTGAACGAGCCGAGCA 61.612 61.111 1.50 0.00 0.00 4.26
2577 3486 2.586635 GTGCACGACCGTGGTGAA 60.587 61.111 21.80 3.94 45.49 3.18
2616 3525 0.038744 TCCGAAGTAGGTCTTCCGGT 59.961 55.000 0.00 0.00 46.97 5.28
2619 3528 1.132073 GTCGTCCGAAGTAGGTCTTCC 59.868 57.143 0.00 0.00 46.97 3.46
2689 3598 1.939838 GCAGAGTTCCGGTCGATTTGT 60.940 52.381 0.00 0.00 0.00 2.83
2691 3600 0.608640 AGCAGAGTTCCGGTCGATTT 59.391 50.000 0.00 0.00 0.00 2.17
2697 3606 4.070552 GCCGAGCAGAGTTCCGGT 62.071 66.667 0.00 0.00 43.51 5.28
2710 3619 3.690685 AATTTGGATCCGCCGCCGA 62.691 57.895 7.39 0.00 40.66 5.54
2728 3637 3.161450 GGTCCCTCCATAGCGCCA 61.161 66.667 2.29 0.00 35.97 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.