Multiple sequence alignment - TraesCS7B01G045700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G045700 chr7B 100.000 2410 0 0 1 2410 44870610 44873019 0.000000e+00 4451
1 TraesCS7B01G045700 chr7D 88.576 1243 87 32 449 1665 92582398 92583611 0.000000e+00 1458
2 TraesCS7B01G045700 chr7A 78.928 1884 231 85 615 2403 94743079 94744891 0.000000e+00 1127
3 TraesCS7B01G045700 chr5D 88.378 413 40 3 4 415 383244699 383245104 7.740000e-135 490
4 TraesCS7B01G045700 chr1D 88.557 402 38 3 14 414 464848005 464848399 4.660000e-132 481
5 TraesCS7B01G045700 chr6A 86.667 420 42 9 1 416 591012875 591013284 1.020000e-123 453


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G045700 chr7B 44870610 44873019 2409 False 4451 4451 100.000 1 2410 1 chr7B.!!$F1 2409
1 TraesCS7B01G045700 chr7D 92582398 92583611 1213 False 1458 1458 88.576 449 1665 1 chr7D.!!$F1 1216
2 TraesCS7B01G045700 chr7A 94743079 94744891 1812 False 1127 1127 78.928 615 2403 1 chr7A.!!$F1 1788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 210 0.037232 CCTGAACGAGGGACAAGGTC 60.037 60.0 0.0 0.0 38.36 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1961 2050 0.037447 TTCAACCATGGCGATGACCA 59.963 50.0 13.04 0.0 45.82 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.528041 GGGGGCATAGAAGAAGTACG 57.472 55.000 0.00 0.00 0.00 3.67
35 36 2.037144 GGGGGCATAGAAGAAGTACGA 58.963 52.381 0.00 0.00 0.00 3.43
36 37 2.223994 GGGGGCATAGAAGAAGTACGAC 60.224 54.545 0.00 0.00 0.00 4.34
37 38 2.429610 GGGGCATAGAAGAAGTACGACA 59.570 50.000 0.00 0.00 0.00 4.35
38 39 3.491104 GGGGCATAGAAGAAGTACGACAG 60.491 52.174 0.00 0.00 0.00 3.51
39 40 3.491104 GGGCATAGAAGAAGTACGACAGG 60.491 52.174 0.00 0.00 0.00 4.00
40 41 3.380637 GGCATAGAAGAAGTACGACAGGA 59.619 47.826 0.00 0.00 0.00 3.86
41 42 4.498345 GGCATAGAAGAAGTACGACAGGAG 60.498 50.000 0.00 0.00 0.00 3.69
42 43 4.498345 GCATAGAAGAAGTACGACAGGAGG 60.498 50.000 0.00 0.00 0.00 4.30
43 44 3.436577 AGAAGAAGTACGACAGGAGGA 57.563 47.619 0.00 0.00 0.00 3.71
44 45 3.764218 AGAAGAAGTACGACAGGAGGAA 58.236 45.455 0.00 0.00 0.00 3.36
45 46 3.759618 AGAAGAAGTACGACAGGAGGAAG 59.240 47.826 0.00 0.00 0.00 3.46
46 47 2.448453 AGAAGTACGACAGGAGGAAGG 58.552 52.381 0.00 0.00 0.00 3.46
47 48 2.041350 AGAAGTACGACAGGAGGAAGGA 59.959 50.000 0.00 0.00 0.00 3.36
48 49 1.836802 AGTACGACAGGAGGAAGGAC 58.163 55.000 0.00 0.00 0.00 3.85
49 50 1.075050 AGTACGACAGGAGGAAGGACA 59.925 52.381 0.00 0.00 0.00 4.02
50 51 1.201880 GTACGACAGGAGGAAGGACAC 59.798 57.143 0.00 0.00 0.00 3.67
51 52 1.213013 CGACAGGAGGAAGGACACG 59.787 63.158 0.00 0.00 0.00 4.49
52 53 1.079750 GACAGGAGGAAGGACACGC 60.080 63.158 0.00 0.00 0.00 5.34
53 54 2.266055 CAGGAGGAAGGACACGCC 59.734 66.667 0.00 0.00 0.00 5.68
54 55 2.203788 AGGAGGAAGGACACGCCA 60.204 61.111 0.00 0.00 40.02 5.69
55 56 1.613630 AGGAGGAAGGACACGCCAT 60.614 57.895 0.00 0.00 40.02 4.40
56 57 1.153349 GGAGGAAGGACACGCCATC 60.153 63.158 0.00 0.00 40.02 3.51
57 58 1.519455 GAGGAAGGACACGCCATCG 60.519 63.158 0.00 0.00 40.02 3.84
58 59 3.195698 GGAAGGACACGCCATCGC 61.196 66.667 0.00 0.00 40.02 4.58
59 60 2.434185 GAAGGACACGCCATCGCA 60.434 61.111 0.00 0.00 40.02 5.10
60 61 2.031919 AAGGACACGCCATCGCAA 59.968 55.556 0.00 0.00 40.02 4.85
61 62 1.970917 GAAGGACACGCCATCGCAAG 61.971 60.000 0.00 0.00 40.02 4.01
73 74 2.754648 TCGCAAGAGAAGCAATCGG 58.245 52.632 0.00 0.00 45.01 4.18
74 75 1.061570 CGCAAGAGAAGCAATCGGC 59.938 57.895 0.00 0.00 42.02 5.54
75 76 2.622722 CGCAAGAGAAGCAATCGGCG 62.623 60.000 0.00 0.00 45.89 6.46
99 100 3.708734 GGCACGACGACCCAAACG 61.709 66.667 0.00 0.00 0.00 3.60
100 101 3.708734 GCACGACGACCCAAACGG 61.709 66.667 0.00 0.00 37.81 4.44
124 125 4.029472 GGTCGGTAAGAGCAGGGA 57.971 61.111 0.00 0.00 46.08 4.20
125 126 2.283824 GGTCGGTAAGAGCAGGGAA 58.716 57.895 0.00 0.00 46.08 3.97
126 127 0.108281 GGTCGGTAAGAGCAGGGAAC 60.108 60.000 0.00 0.00 46.08 3.62
127 128 0.896226 GTCGGTAAGAGCAGGGAACT 59.104 55.000 0.00 0.00 46.44 3.01
128 129 1.135053 GTCGGTAAGAGCAGGGAACTC 60.135 57.143 0.00 0.00 40.21 3.01
129 130 0.175989 CGGTAAGAGCAGGGAACTCC 59.824 60.000 0.00 0.00 40.21 3.85
130 131 0.175989 GGTAAGAGCAGGGAACTCCG 59.824 60.000 0.00 0.00 40.21 4.63
131 132 1.183549 GTAAGAGCAGGGAACTCCGA 58.816 55.000 0.00 0.00 40.21 4.55
132 133 1.135333 GTAAGAGCAGGGAACTCCGAG 59.865 57.143 0.00 0.00 40.21 4.63
133 134 1.261238 AAGAGCAGGGAACTCCGAGG 61.261 60.000 0.00 0.00 40.21 4.63
134 135 2.685380 AGCAGGGAACTCCGAGGG 60.685 66.667 0.00 0.00 40.21 4.30
135 136 3.787001 GCAGGGAACTCCGAGGGG 61.787 72.222 0.00 0.00 40.21 4.79
136 137 2.284699 CAGGGAACTCCGAGGGGT 60.285 66.667 0.00 0.00 40.21 4.95
137 138 2.039137 AGGGAACTCCGAGGGGTC 59.961 66.667 0.00 0.00 41.52 4.46
138 139 3.459063 GGGAACTCCGAGGGGTCG 61.459 72.222 0.00 0.00 36.71 4.79
139 140 2.362120 GGAACTCCGAGGGGTCGA 60.362 66.667 0.00 0.00 34.64 4.20
140 141 1.980772 GGAACTCCGAGGGGTCGAA 60.981 63.158 0.00 0.00 34.64 3.71
141 142 1.511768 GAACTCCGAGGGGTCGAAG 59.488 63.158 0.00 0.00 34.64 3.79
142 143 1.946475 GAACTCCGAGGGGTCGAAGG 61.946 65.000 0.00 0.00 34.64 3.46
143 144 3.839432 CTCCGAGGGGTCGAAGGC 61.839 72.222 0.00 0.00 34.64 4.35
153 154 4.090723 TCGAAGGCGACTCCAGAA 57.909 55.556 0.00 0.00 42.51 3.02
154 155 2.347630 TCGAAGGCGACTCCAGAAA 58.652 52.632 0.00 0.00 42.51 2.52
155 156 0.243907 TCGAAGGCGACTCCAGAAAG 59.756 55.000 0.00 0.00 42.51 2.62
156 157 0.737715 CGAAGGCGACTCCAGAAAGG 60.738 60.000 0.00 0.00 42.68 3.11
157 158 0.608640 GAAGGCGACTCCAGAAAGGA 59.391 55.000 0.00 0.00 46.75 3.36
158 159 4.548318 CGAAGGCGACTCCAGAAAGGAA 62.548 54.545 0.00 0.00 43.09 3.36
159 160 5.963892 CGAAGGCGACTCCAGAAAGGAAA 62.964 52.174 0.00 0.00 43.09 3.13
168 169 2.878406 TCCAGAAAGGAAAGAAGCAACG 59.122 45.455 0.00 0.00 45.65 4.10
169 170 2.878406 CCAGAAAGGAAAGAAGCAACGA 59.122 45.455 0.00 0.00 41.22 3.85
170 171 3.304057 CCAGAAAGGAAAGAAGCAACGAC 60.304 47.826 0.00 0.00 41.22 4.34
171 172 3.312421 CAGAAAGGAAAGAAGCAACGACA 59.688 43.478 0.00 0.00 0.00 4.35
172 173 3.312697 AGAAAGGAAAGAAGCAACGACAC 59.687 43.478 0.00 0.00 0.00 3.67
173 174 2.325583 AGGAAAGAAGCAACGACACA 57.674 45.000 0.00 0.00 0.00 3.72
174 175 2.213499 AGGAAAGAAGCAACGACACAG 58.787 47.619 0.00 0.00 0.00 3.66
175 176 1.264288 GGAAAGAAGCAACGACACAGG 59.736 52.381 0.00 0.00 0.00 4.00
176 177 0.663153 AAAGAAGCAACGACACAGGC 59.337 50.000 0.00 0.00 0.00 4.85
177 178 1.498865 AAGAAGCAACGACACAGGCG 61.499 55.000 0.00 0.00 0.00 5.52
178 179 3.579626 GAAGCAACGACACAGGCGC 62.580 63.158 0.00 0.00 0.00 6.53
182 183 4.595538 AACGACACAGGCGCGGAA 62.596 61.111 8.83 0.00 0.00 4.30
208 209 2.058675 CCTGAACGAGGGACAAGGT 58.941 57.895 0.00 0.00 38.36 3.50
209 210 0.037232 CCTGAACGAGGGACAAGGTC 60.037 60.000 0.00 0.00 38.36 3.85
210 211 0.679505 CTGAACGAGGGACAAGGTCA 59.320 55.000 0.00 0.00 33.68 4.02
211 212 1.070134 CTGAACGAGGGACAAGGTCAA 59.930 52.381 0.00 0.00 33.82 3.18
212 213 1.202604 TGAACGAGGGACAAGGTCAAC 60.203 52.381 0.00 0.00 31.49 3.18
213 214 0.249741 AACGAGGGACAAGGTCAACG 60.250 55.000 0.00 3.74 33.68 4.10
214 215 1.374252 CGAGGGACAAGGTCAACGG 60.374 63.158 0.00 0.00 33.68 4.44
215 216 1.752833 GAGGGACAAGGTCAACGGT 59.247 57.895 0.00 0.00 33.68 4.83
216 217 0.602905 GAGGGACAAGGTCAACGGTG 60.603 60.000 0.00 0.00 33.68 4.94
217 218 1.599797 GGGACAAGGTCAACGGTGG 60.600 63.158 0.00 0.00 33.68 4.61
218 219 1.147600 GGACAAGGTCAACGGTGGT 59.852 57.895 0.00 0.00 33.68 4.16
219 220 1.164041 GGACAAGGTCAACGGTGGTG 61.164 60.000 0.00 0.00 33.68 4.17
220 221 1.153046 ACAAGGTCAACGGTGGTGG 60.153 57.895 0.00 0.00 0.00 4.61
221 222 2.203294 AAGGTCAACGGTGGTGGC 60.203 61.111 0.00 0.00 0.00 5.01
222 223 4.619227 AGGTCAACGGTGGTGGCG 62.619 66.667 0.00 0.00 0.00 5.69
262 263 4.731612 CGTCAGCAGCAGAGCGGT 62.732 66.667 0.00 0.00 40.15 5.68
263 264 2.813042 GTCAGCAGCAGAGCGGTC 60.813 66.667 6.48 6.48 40.15 4.79
264 265 4.074526 TCAGCAGCAGAGCGGTCC 62.075 66.667 11.73 0.00 40.15 4.46
285 286 4.069232 CTGCGGACAAGGAGCGGA 62.069 66.667 0.00 0.00 39.46 5.54
286 287 3.997064 CTGCGGACAAGGAGCGGAG 62.997 68.421 0.00 0.00 39.46 4.63
311 312 4.292178 CCTCTCCGGCGCTCCATC 62.292 72.222 7.64 0.00 0.00 3.51
312 313 4.637489 CTCTCCGGCGCTCCATCG 62.637 72.222 7.64 0.73 0.00 3.84
335 336 2.501610 GGCTAGGCCCAAGTCGAG 59.498 66.667 4.61 0.00 44.06 4.04
336 337 2.058595 GGCTAGGCCCAAGTCGAGA 61.059 63.158 4.61 0.00 44.06 4.04
337 338 1.439644 GCTAGGCCCAAGTCGAGAG 59.560 63.158 0.00 0.00 0.00 3.20
338 339 1.439644 CTAGGCCCAAGTCGAGAGC 59.560 63.158 0.00 0.00 0.00 4.09
339 340 1.304962 TAGGCCCAAGTCGAGAGCA 60.305 57.895 0.00 0.00 0.00 4.26
340 341 1.323271 TAGGCCCAAGTCGAGAGCAG 61.323 60.000 0.00 0.00 0.00 4.24
341 342 2.125350 GCCCAAGTCGAGAGCAGG 60.125 66.667 0.00 0.00 0.00 4.85
342 343 2.650116 GCCCAAGTCGAGAGCAGGA 61.650 63.158 0.00 0.00 0.00 3.86
343 344 1.515020 CCCAAGTCGAGAGCAGGAG 59.485 63.158 0.00 0.00 0.00 3.69
344 345 1.515020 CCAAGTCGAGAGCAGGAGG 59.485 63.158 0.00 0.00 0.00 4.30
345 346 1.254284 CCAAGTCGAGAGCAGGAGGT 61.254 60.000 0.00 0.00 0.00 3.85
346 347 0.108898 CAAGTCGAGAGCAGGAGGTG 60.109 60.000 0.00 0.00 0.00 4.00
347 348 1.254284 AAGTCGAGAGCAGGAGGTGG 61.254 60.000 0.00 0.00 0.00 4.61
348 349 3.071206 TCGAGAGCAGGAGGTGGC 61.071 66.667 0.00 0.00 0.00 5.01
349 350 4.504916 CGAGAGCAGGAGGTGGCG 62.505 72.222 0.00 0.00 34.54 5.69
350 351 3.386237 GAGAGCAGGAGGTGGCGT 61.386 66.667 0.00 0.00 34.54 5.68
351 352 3.655810 GAGAGCAGGAGGTGGCGTG 62.656 68.421 0.00 0.00 34.54 5.34
352 353 4.767255 GAGCAGGAGGTGGCGTGG 62.767 72.222 0.00 0.00 34.54 4.94
355 356 4.704833 CAGGAGGTGGCGTGGGTG 62.705 72.222 0.00 0.00 0.00 4.61
420 421 4.899239 CGGGAGCCCATCAGTCGC 62.899 72.222 6.34 0.00 35.37 5.19
421 422 4.554036 GGGAGCCCATCAGTCGCC 62.554 72.222 0.00 0.00 35.81 5.54
422 423 3.785859 GGAGCCCATCAGTCGCCA 61.786 66.667 0.00 0.00 0.00 5.69
423 424 2.512515 GAGCCCATCAGTCGCCAC 60.513 66.667 0.00 0.00 0.00 5.01
424 425 4.457496 AGCCCATCAGTCGCCACG 62.457 66.667 0.00 0.00 0.00 4.94
426 427 4.838152 CCCATCAGTCGCCACGGG 62.838 72.222 0.00 0.00 0.00 5.28
437 438 4.473643 CCACGGGCACTTTTCTCA 57.526 55.556 0.00 0.00 0.00 3.27
438 439 2.714259 CCACGGGCACTTTTCTCAA 58.286 52.632 0.00 0.00 0.00 3.02
439 440 1.028905 CCACGGGCACTTTTCTCAAA 58.971 50.000 0.00 0.00 0.00 2.69
440 441 1.613437 CCACGGGCACTTTTCTCAAAT 59.387 47.619 0.00 0.00 0.00 2.32
441 442 2.607771 CCACGGGCACTTTTCTCAAATG 60.608 50.000 0.00 0.00 0.00 2.32
442 443 2.034558 CACGGGCACTTTTCTCAAATGT 59.965 45.455 0.00 0.00 0.00 2.71
443 444 2.693074 ACGGGCACTTTTCTCAAATGTT 59.307 40.909 0.00 0.00 0.00 2.71
444 445 3.886505 ACGGGCACTTTTCTCAAATGTTA 59.113 39.130 0.00 0.00 0.00 2.41
445 446 4.339814 ACGGGCACTTTTCTCAAATGTTAA 59.660 37.500 0.00 0.00 0.00 2.01
446 447 4.679654 CGGGCACTTTTCTCAAATGTTAAC 59.320 41.667 0.00 0.00 0.00 2.01
447 448 4.988540 GGGCACTTTTCTCAAATGTTAACC 59.011 41.667 2.48 0.00 0.00 2.85
450 451 5.219633 CACTTTTCTCAAATGTTAACCGGG 58.780 41.667 6.32 0.00 0.00 5.73
463 464 2.002018 AACCGGGGTGAGCTCCAAAA 62.002 55.000 12.15 0.00 33.89 2.44
468 469 0.811281 GGGTGAGCTCCAAAAATCCG 59.189 55.000 12.15 0.00 0.00 4.18
475 476 1.685302 CTCCAAAAATCCGCACAACG 58.315 50.000 0.00 0.00 43.15 4.10
476 477 1.001815 CTCCAAAAATCCGCACAACGT 60.002 47.619 0.00 0.00 41.42 3.99
477 478 1.002251 TCCAAAAATCCGCACAACGTC 60.002 47.619 0.00 0.00 41.42 4.34
478 479 1.268794 CCAAAAATCCGCACAACGTCA 60.269 47.619 0.00 0.00 41.42 4.35
527 529 5.417580 TGAAGCGCCCTCTAAAAATTATGTT 59.582 36.000 2.29 0.00 0.00 2.71
529 531 4.947388 AGCGCCCTCTAAAAATTATGTTGA 59.053 37.500 2.29 0.00 0.00 3.18
532 534 6.438763 CGCCCTCTAAAAATTATGTTGATCC 58.561 40.000 0.00 0.00 0.00 3.36
545 547 1.632018 TTGATCCGGGGTGGGATGAC 61.632 60.000 0.00 0.00 46.75 3.06
559 561 5.163437 GGTGGGATGACGACTCTACTAAAAT 60.163 44.000 0.00 0.00 0.00 1.82
562 564 6.832384 TGGGATGACGACTCTACTAAAATAGT 59.168 38.462 0.00 0.00 42.68 2.12
595 601 6.559810 TCGAAATCATTTCAATTGCGGTTAT 58.440 32.000 10.76 0.00 39.63 1.89
598 604 8.259194 CGAAATCATTTCAATTGCGGTTATTAC 58.741 33.333 10.76 0.00 39.63 1.89
599 605 8.419076 AAATCATTTCAATTGCGGTTATTACC 57.581 30.769 0.00 0.00 41.33 2.85
731 748 7.809806 CAGGAGACAACATTTATTTGGAGAAAC 59.190 37.037 0.00 0.00 0.00 2.78
737 754 6.024552 ACATTTATTTGGAGAAACACGCAT 57.975 33.333 0.00 0.00 0.00 4.73
758 775 2.071540 CATTCACACATCACGCTCAGT 58.928 47.619 0.00 0.00 0.00 3.41
922 946 1.919240 TCGCCAGACAACCTTCTCTA 58.081 50.000 0.00 0.00 0.00 2.43
941 965 1.192428 ACGCGAATAGTTCCTTCCCT 58.808 50.000 15.93 0.00 0.00 4.20
942 966 2.381911 ACGCGAATAGTTCCTTCCCTA 58.618 47.619 15.93 0.00 0.00 3.53
1074 1135 2.733956 CTGGCTCTCCTACTCTGTTCT 58.266 52.381 0.00 0.00 0.00 3.01
1111 1176 0.725117 GGTCCAAGGTATGCGTTTCG 59.275 55.000 0.00 0.00 0.00 3.46
1159 1224 1.267806 GTATGCTTGGCCGGATTGATG 59.732 52.381 5.05 0.00 0.00 3.07
1198 1263 1.433534 GCAGTTTCTCTGGACGGAAG 58.566 55.000 0.00 0.00 43.78 3.46
1220 1285 3.319198 GAGGGGCAACGTCCTCCA 61.319 66.667 9.37 0.00 42.72 3.86
1223 1288 4.329545 GGGCAACGTCCTCCAGCA 62.330 66.667 0.00 0.00 37.60 4.41
1348 1422 2.194056 CCTGGGGATTGCTGCGAT 59.806 61.111 1.02 1.02 0.00 4.58
1361 1438 0.178767 CTGCGATGATCCCTTCCACA 59.821 55.000 0.00 0.00 0.00 4.17
1362 1439 0.178767 TGCGATGATCCCTTCCACAG 59.821 55.000 0.00 0.00 0.00 3.66
1363 1440 0.179000 GCGATGATCCCTTCCACAGT 59.821 55.000 0.00 0.00 0.00 3.55
1364 1441 1.407437 GCGATGATCCCTTCCACAGTT 60.407 52.381 0.00 0.00 0.00 3.16
1365 1442 2.555199 CGATGATCCCTTCCACAGTTC 58.445 52.381 0.00 0.00 0.00 3.01
1367 1444 1.741028 TGATCCCTTCCACAGTTCCA 58.259 50.000 0.00 0.00 0.00 3.53
1368 1445 1.351017 TGATCCCTTCCACAGTTCCAC 59.649 52.381 0.00 0.00 0.00 4.02
1369 1446 0.324943 ATCCCTTCCACAGTTCCACG 59.675 55.000 0.00 0.00 0.00 4.94
1370 1447 1.966451 CCCTTCCACAGTTCCACGC 60.966 63.158 0.00 0.00 0.00 5.34
1371 1448 2.317609 CCTTCCACAGTTCCACGCG 61.318 63.158 3.53 3.53 0.00 6.01
1372 1449 1.594293 CTTCCACAGTTCCACGCGT 60.594 57.895 5.58 5.58 0.00 6.01
1373 1450 1.831389 CTTCCACAGTTCCACGCGTG 61.831 60.000 31.77 31.77 0.00 5.34
1374 1451 4.012895 CCACAGTTCCACGCGTGC 62.013 66.667 33.17 19.77 0.00 5.34
1375 1452 4.012895 CACAGTTCCACGCGTGCC 62.013 66.667 33.17 21.51 0.00 5.01
1376 1453 4.539083 ACAGTTCCACGCGTGCCA 62.539 61.111 33.17 18.90 0.00 4.92
1377 1454 4.012895 CAGTTCCACGCGTGCCAC 62.013 66.667 33.17 27.88 0.00 5.01
1388 1465 3.118454 GTGCCACCGACACCGATG 61.118 66.667 0.00 0.00 38.22 3.84
1398 1475 2.590073 CGACACCGATGCTAGATGATC 58.410 52.381 0.00 0.00 38.22 2.92
1400 1477 3.573598 GACACCGATGCTAGATGATCTG 58.426 50.000 4.96 0.00 0.00 2.90
1403 1482 3.986572 CACCGATGCTAGATGATCTGTTC 59.013 47.826 4.96 0.00 0.00 3.18
1409 1488 6.478016 CGATGCTAGATGATCTGTTCTTTTGA 59.522 38.462 4.96 0.00 0.00 2.69
1429 1508 3.070590 TGATGATGATGATCAGACGGCTT 59.929 43.478 0.09 0.00 42.01 4.35
1432 1511 5.022282 TGATGATGATCAGACGGCTTAAA 57.978 39.130 0.09 0.00 33.40 1.52
1452 1531 8.507249 GCTTAAAAGTCAAAGCAGAGAAATCTA 58.493 33.333 2.35 0.00 45.89 1.98
1466 1546 6.704050 CAGAGAAATCTAAGCTAGCCTTTACC 59.296 42.308 12.13 0.00 34.95 2.85
1476 1556 1.145571 AGCCTTTACCACCCAGACAA 58.854 50.000 0.00 0.00 0.00 3.18
1518 1598 6.263617 TCCAAACTAATTGTAAGCGGAAGTTT 59.736 34.615 0.00 0.00 37.32 2.66
1520 1600 7.096230 CCAAACTAATTGTAAGCGGAAGTTTTG 60.096 37.037 0.00 0.00 37.32 2.44
1523 1603 1.975660 TGTAAGCGGAAGTTTTGCCT 58.024 45.000 0.00 0.00 35.63 4.75
1524 1604 2.303175 TGTAAGCGGAAGTTTTGCCTT 58.697 42.857 0.00 0.00 35.63 4.35
1525 1605 2.691011 TGTAAGCGGAAGTTTTGCCTTT 59.309 40.909 0.00 0.00 35.63 3.11
1526 1606 2.223537 AAGCGGAAGTTTTGCCTTTG 57.776 45.000 0.00 0.00 0.00 2.77
1527 1607 0.389025 AGCGGAAGTTTTGCCTTTGG 59.611 50.000 0.00 0.00 0.00 3.28
1528 1608 5.653820 TAAGCGGAAGTTTTGCCTTTGGC 62.654 47.826 1.01 1.01 41.58 4.52
1559 1647 6.344500 CATCTTGTGGTATTAGAGCAACTCT 58.656 40.000 2.23 2.23 43.83 3.24
1560 1648 7.417911 CCATCTTGTGGTATTAGAGCAACTCTA 60.418 40.741 0.16 0.16 43.44 2.43
1561 1649 7.101652 TCTTGTGGTATTAGAGCAACTCTAG 57.898 40.000 4.64 0.00 42.92 2.43
1562 1650 5.263968 TGTGGTATTAGAGCAACTCTAGC 57.736 43.478 4.64 0.00 42.92 3.42
1563 1651 4.709886 TGTGGTATTAGAGCAACTCTAGCA 59.290 41.667 4.64 0.03 42.92 3.49
1564 1652 5.163509 TGTGGTATTAGAGCAACTCTAGCAG 60.164 44.000 4.64 0.00 42.92 4.24
1565 1653 4.202161 TGGTATTAGAGCAACTCTAGCAGC 60.202 45.833 4.64 6.98 42.92 5.25
1566 1654 4.202161 GGTATTAGAGCAACTCTAGCAGCA 60.202 45.833 4.64 0.00 42.92 4.41
1567 1655 3.961480 TTAGAGCAACTCTAGCAGCAA 57.039 42.857 4.64 0.00 42.92 3.91
1571 1659 0.726256 GCAACTCTAGCAGCAAGAGC 59.274 55.000 0.00 0.00 43.59 4.09
1573 1661 1.066286 CAACTCTAGCAGCAAGAGCCT 60.066 52.381 0.00 0.00 43.59 4.58
1576 1664 1.206610 CTCTAGCAGCAAGAGCCTTCA 59.793 52.381 0.00 0.00 43.56 3.02
1581 1669 3.212685 AGCAGCAAGAGCCTTCATATTC 58.787 45.455 0.00 0.00 43.56 1.75
1582 1670 3.117963 AGCAGCAAGAGCCTTCATATTCT 60.118 43.478 0.00 0.00 43.56 2.40
1585 1673 5.741383 GCAGCAAGAGCCTTCATATTCTCTA 60.741 44.000 0.00 0.00 43.56 2.43
1587 1675 5.011943 AGCAAGAGCCTTCATATTCTCTAGG 59.988 44.000 0.00 0.00 43.56 3.02
1594 1682 5.221263 GCCTTCATATTCTCTAGGTCGTCAA 60.221 44.000 0.00 0.00 0.00 3.18
1595 1683 6.683110 GCCTTCATATTCTCTAGGTCGTCAAA 60.683 42.308 0.00 0.00 0.00 2.69
1603 1691 8.649973 ATTCTCTAGGTCGTCAAAATAATCAC 57.350 34.615 0.00 0.00 0.00 3.06
1634 1722 8.334016 TGATGTTTTTGAGTGAAAATAACACG 57.666 30.769 0.00 0.00 42.25 4.49
1635 1723 8.184848 TGATGTTTTTGAGTGAAAATAACACGA 58.815 29.630 0.00 0.00 42.25 4.35
1643 1731 9.653287 TTGAGTGAAAATAACACGATAAGAGAT 57.347 29.630 0.00 0.00 42.25 2.75
1654 1742 3.249091 CGATAAGAGATTCGCCATCCAG 58.751 50.000 0.00 0.00 31.20 3.86
1660 1748 0.250640 GATTCGCCATCCAGCCTCAT 60.251 55.000 0.00 0.00 0.00 2.90
1663 1751 0.610174 TCGCCATCCAGCCTCATATC 59.390 55.000 0.00 0.00 0.00 1.63
1664 1752 0.322648 CGCCATCCAGCCTCATATCA 59.677 55.000 0.00 0.00 0.00 2.15
1684 1772 8.627403 CATATCATCATAATTTATGGAGGGTGC 58.373 37.037 14.80 0.00 36.81 5.01
1686 1774 6.240894 TCATCATAATTTATGGAGGGTGCTC 58.759 40.000 14.80 0.00 36.81 4.26
1695 1783 0.605589 GGAGGGTGCTCCATATCGAG 59.394 60.000 7.20 0.00 42.86 4.04
1715 1803 4.260907 CGAGCCCACATGTCTTCATATTTG 60.261 45.833 0.00 0.00 32.47 2.32
1718 1806 4.037208 GCCCACATGTCTTCATATTTGGAG 59.963 45.833 0.00 0.00 33.25 3.86
1719 1807 4.581824 CCCACATGTCTTCATATTTGGAGG 59.418 45.833 0.00 0.00 33.25 4.30
1722 1810 4.885907 ACATGTCTTCATATTTGGAGGCTG 59.114 41.667 0.00 0.00 33.88 4.85
1725 1813 2.175499 TCTTCATATTTGGAGGCTGGGG 59.825 50.000 0.00 0.00 0.00 4.96
1726 1814 0.852842 TCATATTTGGAGGCTGGGGG 59.147 55.000 0.00 0.00 0.00 5.40
1727 1815 0.557729 CATATTTGGAGGCTGGGGGT 59.442 55.000 0.00 0.00 0.00 4.95
1728 1816 1.062962 CATATTTGGAGGCTGGGGGTT 60.063 52.381 0.00 0.00 0.00 4.11
1729 1817 0.334676 TATTTGGAGGCTGGGGGTTG 59.665 55.000 0.00 0.00 0.00 3.77
1735 1823 2.200092 GGCTGGGGGTTGGTTTGA 59.800 61.111 0.00 0.00 0.00 2.69
1738 1826 2.049435 CTGGGGGTTGGTTTGAAGC 58.951 57.895 0.00 0.00 0.00 3.86
1740 1828 2.338620 GGGGTTGGTTTGAAGCGC 59.661 61.111 0.00 0.00 0.00 5.92
1755 1843 2.256591 GCGCGCTCCATCCATCAAT 61.257 57.895 26.67 0.00 0.00 2.57
1757 1845 1.864862 GCGCTCCATCCATCAATCG 59.135 57.895 0.00 0.00 0.00 3.34
1758 1846 0.882042 GCGCTCCATCCATCAATCGT 60.882 55.000 0.00 0.00 0.00 3.73
1761 1849 1.202687 GCTCCATCCATCAATCGTCCA 60.203 52.381 0.00 0.00 0.00 4.02
1770 1858 2.385013 TCAATCGTCCACATGTGAGG 57.615 50.000 27.46 17.09 0.00 3.86
1771 1859 1.899142 TCAATCGTCCACATGTGAGGA 59.101 47.619 27.46 21.11 32.33 3.71
1772 1860 2.301583 TCAATCGTCCACATGTGAGGAA 59.698 45.455 27.46 10.11 36.57 3.36
1773 1861 2.386661 ATCGTCCACATGTGAGGAAC 57.613 50.000 27.46 16.64 36.57 3.62
1774 1862 0.038618 TCGTCCACATGTGAGGAACG 60.039 55.000 27.46 25.49 36.57 3.95
1775 1863 0.319555 CGTCCACATGTGAGGAACGT 60.320 55.000 27.46 0.00 36.57 3.99
1776 1864 1.068125 CGTCCACATGTGAGGAACGTA 60.068 52.381 27.46 0.00 36.57 3.57
1777 1865 2.416836 CGTCCACATGTGAGGAACGTAT 60.417 50.000 27.46 0.00 36.57 3.06
1778 1866 3.187700 GTCCACATGTGAGGAACGTATC 58.812 50.000 27.46 0.26 36.57 2.24
1779 1867 2.829120 TCCACATGTGAGGAACGTATCA 59.171 45.455 27.46 0.00 31.83 2.15
1780 1868 3.450817 TCCACATGTGAGGAACGTATCAT 59.549 43.478 27.46 0.00 31.83 2.45
1781 1869 3.804325 CCACATGTGAGGAACGTATCATC 59.196 47.826 27.46 0.00 39.31 2.92
1782 1870 4.442052 CCACATGTGAGGAACGTATCATCT 60.442 45.833 27.46 0.00 39.58 2.90
1783 1871 5.111989 CACATGTGAGGAACGTATCATCTT 58.888 41.667 21.64 0.00 39.58 2.40
1784 1872 5.233050 CACATGTGAGGAACGTATCATCTTC 59.767 44.000 21.64 2.97 39.58 2.87
1792 1880 4.099573 GGAACGTATCATCTTCCTCCTCAA 59.900 45.833 0.00 0.00 32.16 3.02
1797 1885 4.769345 ATCATCTTCCTCCTCAACCTTC 57.231 45.455 0.00 0.00 0.00 3.46
1798 1886 2.497675 TCATCTTCCTCCTCAACCTTCG 59.502 50.000 0.00 0.00 0.00 3.79
1799 1887 2.304221 TCTTCCTCCTCAACCTTCGA 57.696 50.000 0.00 0.00 0.00 3.71
1802 1890 0.538977 TCCTCCTCAACCTTCGACGT 60.539 55.000 0.00 0.00 0.00 4.34
1805 1893 0.824595 TCCTCAACCTTCGACGTGGA 60.825 55.000 14.48 0.00 0.00 4.02
1810 1898 0.037605 AACCTTCGACGTGGACCATC 60.038 55.000 14.48 0.00 0.00 3.51
1829 1917 5.253096 ACCATCTTTTGTCCCTACTAATGGT 59.747 40.000 0.00 0.00 30.99 3.55
1832 1920 4.042311 TCTTTTGTCCCTACTAATGGTGCA 59.958 41.667 0.00 0.00 0.00 4.57
1835 1923 2.236146 TGTCCCTACTAATGGTGCAGTG 59.764 50.000 0.00 0.00 0.00 3.66
1836 1924 2.500098 GTCCCTACTAATGGTGCAGTGA 59.500 50.000 0.00 0.00 0.00 3.41
1837 1925 2.500098 TCCCTACTAATGGTGCAGTGAC 59.500 50.000 0.00 0.00 0.00 3.67
1843 1931 2.282391 TGGTGCAGTGACCATGGC 60.282 61.111 13.04 5.35 41.30 4.40
1844 1932 2.282391 GGTGCAGTGACCATGGCA 60.282 61.111 13.04 8.31 35.88 4.92
1845 1933 1.679977 GGTGCAGTGACCATGGCAT 60.680 57.895 13.04 0.00 38.68 4.40
1846 1934 1.660560 GGTGCAGTGACCATGGCATC 61.661 60.000 13.04 3.11 38.68 3.91
1847 1935 0.961857 GTGCAGTGACCATGGCATCA 60.962 55.000 13.04 6.27 38.68 3.07
1848 1936 0.678684 TGCAGTGACCATGGCATCAG 60.679 55.000 13.04 0.15 0.00 2.90
1849 1937 1.381928 GCAGTGACCATGGCATCAGG 61.382 60.000 13.04 5.70 0.00 3.86
1850 1938 0.253894 CAGTGACCATGGCATCAGGA 59.746 55.000 13.04 0.00 0.00 3.86
1851 1939 0.994247 AGTGACCATGGCATCAGGAA 59.006 50.000 13.04 0.00 0.00 3.36
1852 1940 1.355381 AGTGACCATGGCATCAGGAAA 59.645 47.619 13.04 0.00 0.00 3.13
1853 1941 1.474077 GTGACCATGGCATCAGGAAAC 59.526 52.381 13.04 4.83 0.00 2.78
1854 1942 0.734889 GACCATGGCATCAGGAAACG 59.265 55.000 13.04 0.00 0.00 3.60
1855 1943 0.038166 ACCATGGCATCAGGAAACGT 59.962 50.000 13.04 0.00 0.00 3.99
1856 1944 0.452987 CCATGGCATCAGGAAACGTG 59.547 55.000 0.00 0.00 0.00 4.49
1857 1945 0.179156 CATGGCATCAGGAAACGTGC 60.179 55.000 0.00 0.00 36.88 5.34
1859 1947 3.667087 GCATCAGGAAACGTGCCA 58.333 55.556 10.03 0.00 0.00 4.92
1860 1948 1.956043 GCATCAGGAAACGTGCCAA 59.044 52.632 10.03 0.00 0.00 4.52
1861 1949 0.527565 GCATCAGGAAACGTGCCAAT 59.472 50.000 10.03 1.25 0.00 3.16
1862 1950 1.067635 GCATCAGGAAACGTGCCAATT 60.068 47.619 10.03 0.00 0.00 2.32
1863 1951 2.163412 GCATCAGGAAACGTGCCAATTA 59.837 45.455 10.03 0.00 0.00 1.40
1864 1952 3.366883 GCATCAGGAAACGTGCCAATTAA 60.367 43.478 10.03 0.00 0.00 1.40
1865 1953 4.677779 GCATCAGGAAACGTGCCAATTAAT 60.678 41.667 10.03 0.00 0.00 1.40
1866 1954 4.433186 TCAGGAAACGTGCCAATTAATG 57.567 40.909 10.03 0.00 0.00 1.90
1887 1975 0.178301 TTGACACCGTGTGCCAACTA 59.822 50.000 9.42 0.00 31.52 2.24
1892 1980 1.006571 CCGTGTGCCAACTACTCGT 60.007 57.895 0.00 0.00 34.37 4.18
1912 2000 2.700773 GCCACTCCCGCCACATTTC 61.701 63.158 0.00 0.00 0.00 2.17
1914 2002 0.609131 CCACTCCCGCCACATTTCTT 60.609 55.000 0.00 0.00 0.00 2.52
1915 2003 0.523072 CACTCCCGCCACATTTCTTG 59.477 55.000 0.00 0.00 0.00 3.02
1916 2004 0.609131 ACTCCCGCCACATTTCTTGG 60.609 55.000 0.00 0.00 37.17 3.61
1917 2005 0.609131 CTCCCGCCACATTTCTTGGT 60.609 55.000 0.00 0.00 36.40 3.67
1922 2011 1.470996 GCCACATTTCTTGGTGCCCA 61.471 55.000 0.00 0.00 36.40 5.36
1941 2030 5.137551 GCCCACCATGTTTATATGTTACCT 58.862 41.667 0.00 0.00 0.00 3.08
1948 2037 9.930158 ACCATGTTTATATGTTACCTACCATTT 57.070 29.630 0.00 0.00 0.00 2.32
1981 2070 1.173043 GGTCATCGCCATGGTTGAAA 58.827 50.000 14.67 2.43 0.00 2.69
1990 2079 2.608752 GCCATGGTTGAAAAGCTCACAG 60.609 50.000 14.67 0.00 46.34 3.66
1994 2083 1.000938 GGTTGAAAAGCTCACAGCCTG 60.001 52.381 11.31 0.00 43.77 4.85
2000 2089 3.735029 GCTCACAGCCTGCACTGC 61.735 66.667 4.32 0.00 41.60 4.40
2014 2103 2.730094 CTGCCAACACAGTTGCCC 59.270 61.111 4.42 0.00 32.78 5.36
2027 2116 0.033109 GTTGCCCATAGCCCCTTTCT 60.033 55.000 0.00 0.00 42.71 2.52
2028 2117 0.258774 TTGCCCATAGCCCCTTTCTC 59.741 55.000 0.00 0.00 42.71 2.87
2032 2122 1.570979 CCCATAGCCCCTTTCTCCTTT 59.429 52.381 0.00 0.00 0.00 3.11
2036 2126 4.104738 CCATAGCCCCTTTCTCCTTTATGA 59.895 45.833 0.00 0.00 0.00 2.15
2038 2128 2.919602 AGCCCCTTTCTCCTTTATGACA 59.080 45.455 0.00 0.00 0.00 3.58
2044 2134 6.125029 CCCTTTCTCCTTTATGACATCATGT 58.875 40.000 4.58 0.00 37.15 3.21
2045 2135 6.604795 CCCTTTCTCCTTTATGACATCATGTT 59.395 38.462 4.58 0.00 37.15 2.71
2053 2143 1.838112 TGACATCATGTTGCTTCCCC 58.162 50.000 3.61 0.00 0.00 4.81
2057 2147 1.475280 CATCATGTTGCTTCCCCTGTG 59.525 52.381 0.00 0.00 0.00 3.66
2058 2148 0.770499 TCATGTTGCTTCCCCTGTGA 59.230 50.000 0.00 0.00 0.00 3.58
2059 2149 1.144708 TCATGTTGCTTCCCCTGTGAA 59.855 47.619 0.00 0.00 0.00 3.18
2060 2150 1.270550 CATGTTGCTTCCCCTGTGAAC 59.729 52.381 0.00 0.00 0.00 3.18
2061 2151 0.257328 TGTTGCTTCCCCTGTGAACA 59.743 50.000 0.00 0.00 0.00 3.18
2062 2152 0.954452 GTTGCTTCCCCTGTGAACAG 59.046 55.000 3.35 3.35 43.40 3.16
2063 2153 0.843309 TTGCTTCCCCTGTGAACAGA 59.157 50.000 12.05 0.00 46.59 3.41
2064 2154 1.067295 TGCTTCCCCTGTGAACAGAT 58.933 50.000 12.05 0.00 46.59 2.90
2065 2155 1.425066 TGCTTCCCCTGTGAACAGATT 59.575 47.619 12.05 0.00 46.59 2.40
2066 2156 2.158475 TGCTTCCCCTGTGAACAGATTT 60.158 45.455 12.05 0.00 46.59 2.17
2067 2157 2.893489 GCTTCCCCTGTGAACAGATTTT 59.107 45.455 12.05 0.00 46.59 1.82
2071 2161 2.242043 CCCTGTGAACAGATTTTGGCT 58.758 47.619 12.05 0.00 46.59 4.75
2075 2165 4.946157 CCTGTGAACAGATTTTGGCTAGAT 59.054 41.667 12.05 0.00 46.59 1.98
2082 2172 3.026694 AGATTTTGGCTAGATTGGGTGC 58.973 45.455 0.00 0.00 0.00 5.01
2088 2178 1.592669 CTAGATTGGGTGCCGCTCG 60.593 63.158 0.00 0.00 0.00 5.03
2089 2179 2.016393 CTAGATTGGGTGCCGCTCGA 62.016 60.000 0.00 0.00 0.00 4.04
2125 2246 0.754217 TTATGTCCTAGAGGCCGCGT 60.754 55.000 4.92 0.00 34.44 6.01
2126 2247 1.452953 TATGTCCTAGAGGCCGCGTG 61.453 60.000 4.92 0.00 34.44 5.34
2148 2269 3.767902 GAGGATCCTTCCCTTGATGAG 57.232 52.381 17.42 0.00 43.76 2.90
2151 2272 2.570135 GATCCTTCCCTTGATGAGTGC 58.430 52.381 0.00 0.00 0.00 4.40
2152 2273 0.620556 TCCTTCCCTTGATGAGTGCC 59.379 55.000 0.00 0.00 0.00 5.01
2153 2274 0.394899 CCTTCCCTTGATGAGTGCCC 60.395 60.000 0.00 0.00 0.00 5.36
2154 2275 0.622665 CTTCCCTTGATGAGTGCCCT 59.377 55.000 0.00 0.00 0.00 5.19
2156 2277 0.547471 TCCCTTGATGAGTGCCCTGA 60.547 55.000 0.00 0.00 0.00 3.86
2159 2280 2.173356 CCCTTGATGAGTGCCCTGATTA 59.827 50.000 0.00 0.00 0.00 1.75
2165 2286 3.845781 TGAGTGCCCTGATTAGAATCC 57.154 47.619 0.00 0.00 34.50 3.01
2175 2296 6.546484 CCCTGATTAGAATCCCATAACACAT 58.454 40.000 0.00 0.00 34.50 3.21
2184 2317 7.400439 AGAATCCCATAACACATGATATCCAG 58.600 38.462 0.00 0.00 0.00 3.86
2188 2321 5.311265 CCATAACACATGATATCCAGCACT 58.689 41.667 0.00 0.00 0.00 4.40
2189 2322 6.466812 CCATAACACATGATATCCAGCACTA 58.533 40.000 0.00 0.00 0.00 2.74
2193 2326 6.430962 ACACATGATATCCAGCACTAGAAT 57.569 37.500 0.00 0.00 0.00 2.40
2196 2329 6.147328 CACATGATATCCAGCACTAGAATGTG 59.853 42.308 0.00 5.80 40.62 3.21
2212 2345 1.485124 TGTGCAGATCCCGTATGAGT 58.515 50.000 0.00 0.00 0.00 3.41
2245 2378 2.222027 GCCCAAGAAACTCATATCGGG 58.778 52.381 0.00 0.00 35.42 5.14
2280 2413 3.068732 TCCATCGCATCTCTGTTAAGGAG 59.931 47.826 0.36 0.36 0.00 3.69
2293 2426 3.054655 TGTTAAGGAGGTGTGGGATTAGC 60.055 47.826 0.00 0.00 0.00 3.09
2294 2427 0.541863 AAGGAGGTGTGGGATTAGCG 59.458 55.000 0.00 0.00 0.00 4.26
2298 2431 2.112815 GGTGTGGGATTAGCGCCAC 61.113 63.158 2.29 4.26 37.95 5.01
2319 2452 2.264794 GCCCACACCTCGATCGTT 59.735 61.111 15.94 0.00 0.00 3.85
2321 2454 1.516386 CCCACACCTCGATCGTTCG 60.516 63.158 15.94 9.59 46.87 3.95
2322 2455 1.516386 CCACACCTCGATCGTTCGG 60.516 63.158 15.94 15.76 45.53 4.30
2324 2457 2.341101 ACACCTCGATCGTTCGGCT 61.341 57.895 15.94 3.25 45.53 5.52
2325 2458 1.586564 CACCTCGATCGTTCGGCTC 60.587 63.158 15.94 0.00 45.53 4.70
2342 2475 2.499896 GCTCGACAAAATCTTCAAGCG 58.500 47.619 0.00 0.00 0.00 4.68
2368 2501 2.359107 CCAAGAAGGCGCTGCAGA 60.359 61.111 20.43 0.00 0.00 4.26
2376 2509 2.186384 GCGCTGCAGATGGAGAGT 59.814 61.111 20.43 0.00 35.86 3.24
2377 2510 2.172372 GCGCTGCAGATGGAGAGTG 61.172 63.158 20.43 0.00 35.86 3.51
2378 2511 1.514553 CGCTGCAGATGGAGAGTGA 59.485 57.895 20.43 0.00 35.31 3.41
2381 2514 0.179116 CTGCAGATGGAGAGTGACCG 60.179 60.000 8.42 0.00 35.31 4.79
2382 2515 1.520342 GCAGATGGAGAGTGACCGC 60.520 63.158 0.00 0.00 0.00 5.68
2383 2516 1.893062 CAGATGGAGAGTGACCGCA 59.107 57.895 0.00 0.00 0.00 5.69
2388 2521 1.296715 GGAGAGTGACCGCACCATT 59.703 57.895 0.00 0.00 46.32 3.16
2403 2536 4.496341 CGCACCATTTGGCTCTATTACAAG 60.496 45.833 0.00 0.00 39.32 3.16
2404 2537 4.202050 GCACCATTTGGCTCTATTACAAGG 60.202 45.833 0.00 0.00 39.32 3.61
2405 2538 3.954258 ACCATTTGGCTCTATTACAAGGC 59.046 43.478 0.00 0.00 39.32 4.35
2406 2539 3.953612 CCATTTGGCTCTATTACAAGGCA 59.046 43.478 0.00 0.00 45.21 4.75
2407 2540 4.586001 CCATTTGGCTCTATTACAAGGCAT 59.414 41.667 0.00 0.00 46.01 4.40
2408 2541 5.769662 CCATTTGGCTCTATTACAAGGCATA 59.230 40.000 0.00 0.00 46.01 3.14
2409 2542 6.265196 CCATTTGGCTCTATTACAAGGCATAA 59.735 38.462 0.00 0.00 46.01 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.037144 TCGTACTTCTTCTATGCCCCC 58.963 52.381 0.00 0.00 0.00 5.40
16 17 2.429610 TGTCGTACTTCTTCTATGCCCC 59.570 50.000 0.00 0.00 0.00 5.80
17 18 3.491104 CCTGTCGTACTTCTTCTATGCCC 60.491 52.174 0.00 0.00 0.00 5.36
18 19 3.380637 TCCTGTCGTACTTCTTCTATGCC 59.619 47.826 0.00 0.00 0.00 4.40
19 20 4.498345 CCTCCTGTCGTACTTCTTCTATGC 60.498 50.000 0.00 0.00 0.00 3.14
20 21 4.882427 TCCTCCTGTCGTACTTCTTCTATG 59.118 45.833 0.00 0.00 0.00 2.23
21 22 5.113446 TCCTCCTGTCGTACTTCTTCTAT 57.887 43.478 0.00 0.00 0.00 1.98
22 23 4.564782 TCCTCCTGTCGTACTTCTTCTA 57.435 45.455 0.00 0.00 0.00 2.10
23 24 3.436577 TCCTCCTGTCGTACTTCTTCT 57.563 47.619 0.00 0.00 0.00 2.85
24 25 3.119424 CCTTCCTCCTGTCGTACTTCTTC 60.119 52.174 0.00 0.00 0.00 2.87
25 26 2.826725 CCTTCCTCCTGTCGTACTTCTT 59.173 50.000 0.00 0.00 0.00 2.52
26 27 2.041350 TCCTTCCTCCTGTCGTACTTCT 59.959 50.000 0.00 0.00 0.00 2.85
27 28 2.164017 GTCCTTCCTCCTGTCGTACTTC 59.836 54.545 0.00 0.00 0.00 3.01
28 29 2.169330 GTCCTTCCTCCTGTCGTACTT 58.831 52.381 0.00 0.00 0.00 2.24
29 30 1.075050 TGTCCTTCCTCCTGTCGTACT 59.925 52.381 0.00 0.00 0.00 2.73
30 31 1.201880 GTGTCCTTCCTCCTGTCGTAC 59.798 57.143 0.00 0.00 0.00 3.67
31 32 1.542492 GTGTCCTTCCTCCTGTCGTA 58.458 55.000 0.00 0.00 0.00 3.43
32 33 1.524863 CGTGTCCTTCCTCCTGTCGT 61.525 60.000 0.00 0.00 0.00 4.34
33 34 1.213013 CGTGTCCTTCCTCCTGTCG 59.787 63.158 0.00 0.00 0.00 4.35
34 35 1.079750 GCGTGTCCTTCCTCCTGTC 60.080 63.158 0.00 0.00 0.00 3.51
35 36 2.584391 GGCGTGTCCTTCCTCCTGT 61.584 63.158 0.00 0.00 0.00 4.00
36 37 1.903877 ATGGCGTGTCCTTCCTCCTG 61.904 60.000 0.00 0.00 35.26 3.86
37 38 1.613630 ATGGCGTGTCCTTCCTCCT 60.614 57.895 0.00 0.00 35.26 3.69
38 39 1.153349 GATGGCGTGTCCTTCCTCC 60.153 63.158 0.00 0.00 33.98 4.30
39 40 1.519455 CGATGGCGTGTCCTTCCTC 60.519 63.158 0.00 0.00 36.04 3.71
40 41 2.579201 CGATGGCGTGTCCTTCCT 59.421 61.111 0.00 0.00 36.04 3.36
41 42 3.195698 GCGATGGCGTGTCCTTCC 61.196 66.667 0.00 0.00 40.36 3.46
42 43 1.970917 CTTGCGATGGCGTGTCCTTC 61.971 60.000 0.00 0.00 44.10 3.46
43 44 2.031919 TTGCGATGGCGTGTCCTT 59.968 55.556 0.00 0.00 44.10 3.36
44 45 2.434884 CTTGCGATGGCGTGTCCT 60.435 61.111 0.00 0.00 44.10 3.85
45 46 2.434185 TCTTGCGATGGCGTGTCC 60.434 61.111 0.00 0.00 44.10 4.02
46 47 1.014044 TTCTCTTGCGATGGCGTGTC 61.014 55.000 0.00 0.00 44.10 3.67
47 48 1.005037 TTCTCTTGCGATGGCGTGT 60.005 52.632 0.00 0.00 44.10 4.49
48 49 1.712081 CTTCTCTTGCGATGGCGTG 59.288 57.895 0.00 0.00 44.10 5.34
49 50 2.103042 GCTTCTCTTGCGATGGCGT 61.103 57.895 0.00 0.00 44.10 5.68
50 51 1.638388 TTGCTTCTCTTGCGATGGCG 61.638 55.000 0.00 0.00 44.10 5.69
51 52 0.737219 ATTGCTTCTCTTGCGATGGC 59.263 50.000 0.00 0.00 33.66 4.40
52 53 1.004185 CGATTGCTTCTCTTGCGATGG 60.004 52.381 0.00 0.00 34.93 3.51
53 54 1.004185 CCGATTGCTTCTCTTGCGATG 60.004 52.381 0.00 0.00 34.93 3.84
54 55 1.293924 CCGATTGCTTCTCTTGCGAT 58.706 50.000 0.00 0.00 37.26 4.58
55 56 1.361668 GCCGATTGCTTCTCTTGCGA 61.362 55.000 0.00 0.00 36.87 5.10
56 57 1.061570 GCCGATTGCTTCTCTTGCG 59.938 57.895 0.00 0.00 36.87 4.85
57 58 1.061570 CGCCGATTGCTTCTCTTGC 59.938 57.895 0.00 0.00 38.05 4.01
58 59 0.371645 GTCGCCGATTGCTTCTCTTG 59.628 55.000 0.00 0.00 38.05 3.02
59 60 1.078759 CGTCGCCGATTGCTTCTCTT 61.079 55.000 0.00 0.00 38.05 2.85
60 61 1.517257 CGTCGCCGATTGCTTCTCT 60.517 57.895 0.00 0.00 38.05 3.10
61 62 1.076533 TTCGTCGCCGATTGCTTCTC 61.077 55.000 0.00 0.00 43.80 2.87
62 63 1.080093 TTCGTCGCCGATTGCTTCT 60.080 52.632 0.00 0.00 43.80 2.85
63 64 1.058903 GTTCGTCGCCGATTGCTTC 59.941 57.895 0.00 0.00 43.80 3.86
64 65 2.726691 CGTTCGTCGCCGATTGCTT 61.727 57.895 0.00 0.00 43.80 3.91
65 66 3.179265 CGTTCGTCGCCGATTGCT 61.179 61.111 0.00 0.00 43.80 3.91
66 67 4.204891 CCGTTCGTCGCCGATTGC 62.205 66.667 0.00 0.00 43.80 3.56
67 68 4.204891 GCCGTTCGTCGCCGATTG 62.205 66.667 0.00 0.00 43.80 2.67
68 69 4.728102 TGCCGTTCGTCGCCGATT 62.728 61.111 0.00 0.00 43.80 3.34
75 76 3.456039 GTCGTCGTGCCGTTCGTC 61.456 66.667 0.00 6.02 0.00 4.20
76 77 4.988486 GGTCGTCGTGCCGTTCGT 62.988 66.667 0.00 0.00 0.00 3.85
78 79 4.651008 TGGGTCGTCGTGCCGTTC 62.651 66.667 0.00 0.00 0.00 3.95
79 80 3.736732 TTTGGGTCGTCGTGCCGTT 62.737 57.895 0.00 0.00 0.00 4.44
80 81 4.224274 TTTGGGTCGTCGTGCCGT 62.224 61.111 0.00 0.00 0.00 5.68
81 82 3.708734 GTTTGGGTCGTCGTGCCG 61.709 66.667 0.00 0.00 0.00 5.69
82 83 3.708734 CGTTTGGGTCGTCGTGCC 61.709 66.667 0.00 0.00 0.00 5.01
83 84 3.708734 CCGTTTGGGTCGTCGTGC 61.709 66.667 0.00 0.00 0.00 5.34
104 105 2.494918 CTGCTCTTACCGACCCCG 59.505 66.667 0.00 0.00 0.00 5.73
105 106 2.732619 CCCTGCTCTTACCGACCCC 61.733 68.421 0.00 0.00 0.00 4.95
106 107 1.262640 TTCCCTGCTCTTACCGACCC 61.263 60.000 0.00 0.00 0.00 4.46
107 108 0.108281 GTTCCCTGCTCTTACCGACC 60.108 60.000 0.00 0.00 0.00 4.79
108 109 0.896226 AGTTCCCTGCTCTTACCGAC 59.104 55.000 0.00 0.00 0.00 4.79
109 110 1.183549 GAGTTCCCTGCTCTTACCGA 58.816 55.000 0.00 0.00 0.00 4.69
110 111 0.175989 GGAGTTCCCTGCTCTTACCG 59.824 60.000 0.00 0.00 33.73 4.02
111 112 0.175989 CGGAGTTCCCTGCTCTTACC 59.824 60.000 0.00 0.00 33.73 2.85
112 113 1.135333 CTCGGAGTTCCCTGCTCTTAC 59.865 57.143 0.00 0.00 33.73 2.34
113 114 1.475403 CTCGGAGTTCCCTGCTCTTA 58.525 55.000 0.00 0.00 33.73 2.10
114 115 1.261238 CCTCGGAGTTCCCTGCTCTT 61.261 60.000 4.02 0.00 33.73 2.85
115 116 1.684049 CCTCGGAGTTCCCTGCTCT 60.684 63.158 4.02 0.00 33.73 4.09
116 117 2.726351 CCCTCGGAGTTCCCTGCTC 61.726 68.421 4.02 0.00 0.00 4.26
117 118 2.685380 CCCTCGGAGTTCCCTGCT 60.685 66.667 4.02 0.00 0.00 4.24
118 119 3.787001 CCCCTCGGAGTTCCCTGC 61.787 72.222 4.02 0.00 0.00 4.85
119 120 2.284699 ACCCCTCGGAGTTCCCTG 60.285 66.667 4.02 0.00 0.00 4.45
120 121 2.039137 GACCCCTCGGAGTTCCCT 59.961 66.667 4.02 0.00 0.00 4.20
121 122 3.459063 CGACCCCTCGGAGTTCCC 61.459 72.222 4.02 0.00 36.16 3.97
122 123 1.946475 CTTCGACCCCTCGGAGTTCC 61.946 65.000 4.02 0.00 40.28 3.62
123 124 1.511768 CTTCGACCCCTCGGAGTTC 59.488 63.158 4.02 0.00 40.28 3.01
124 125 1.982938 CCTTCGACCCCTCGGAGTT 60.983 63.158 4.02 0.00 43.27 3.01
125 126 2.362632 CCTTCGACCCCTCGGAGT 60.363 66.667 4.02 0.00 43.27 3.85
126 127 3.839432 GCCTTCGACCCCTCGGAG 61.839 72.222 0.00 0.00 44.27 4.63
136 137 0.243907 CTTTCTGGAGTCGCCTTCGA 59.756 55.000 0.00 0.00 43.28 3.71
137 138 0.737715 CCTTTCTGGAGTCGCCTTCG 60.738 60.000 0.00 0.00 38.35 3.79
138 139 0.608640 TCCTTTCTGGAGTCGCCTTC 59.391 55.000 0.00 0.00 40.56 3.46
139 140 2.759985 TCCTTTCTGGAGTCGCCTT 58.240 52.632 0.00 0.00 40.56 4.35
140 141 4.541213 TCCTTTCTGGAGTCGCCT 57.459 55.556 0.00 0.00 40.56 5.52
147 148 2.878406 CGTTGCTTCTTTCCTTTCTGGA 59.122 45.455 0.00 0.00 44.51 3.86
148 149 2.878406 TCGTTGCTTCTTTCCTTTCTGG 59.122 45.455 0.00 0.00 37.10 3.86
149 150 3.312421 TGTCGTTGCTTCTTTCCTTTCTG 59.688 43.478 0.00 0.00 0.00 3.02
150 151 3.312697 GTGTCGTTGCTTCTTTCCTTTCT 59.687 43.478 0.00 0.00 0.00 2.52
151 152 3.064820 TGTGTCGTTGCTTCTTTCCTTTC 59.935 43.478 0.00 0.00 0.00 2.62
152 153 3.013921 TGTGTCGTTGCTTCTTTCCTTT 58.986 40.909 0.00 0.00 0.00 3.11
153 154 2.614057 CTGTGTCGTTGCTTCTTTCCTT 59.386 45.455 0.00 0.00 0.00 3.36
154 155 2.213499 CTGTGTCGTTGCTTCTTTCCT 58.787 47.619 0.00 0.00 0.00 3.36
155 156 1.264288 CCTGTGTCGTTGCTTCTTTCC 59.736 52.381 0.00 0.00 0.00 3.13
156 157 1.334149 GCCTGTGTCGTTGCTTCTTTC 60.334 52.381 0.00 0.00 0.00 2.62
157 158 0.663153 GCCTGTGTCGTTGCTTCTTT 59.337 50.000 0.00 0.00 0.00 2.52
158 159 1.498865 CGCCTGTGTCGTTGCTTCTT 61.499 55.000 0.00 0.00 0.00 2.52
159 160 1.956170 CGCCTGTGTCGTTGCTTCT 60.956 57.895 0.00 0.00 0.00 2.85
160 161 2.551270 CGCCTGTGTCGTTGCTTC 59.449 61.111 0.00 0.00 0.00 3.86
161 162 3.649986 GCGCCTGTGTCGTTGCTT 61.650 61.111 0.00 0.00 0.00 3.91
165 166 4.595538 TTCCGCGCCTGTGTCGTT 62.596 61.111 0.00 0.00 0.00 3.85
183 184 1.067582 CCCTCGTTCAGGTATCGCC 59.932 63.158 0.00 0.00 41.51 5.54
184 185 0.248949 GTCCCTCGTTCAGGTATCGC 60.249 60.000 0.00 0.00 41.51 4.58
185 186 1.100510 TGTCCCTCGTTCAGGTATCG 58.899 55.000 0.00 0.00 41.51 2.92
186 187 2.159085 CCTTGTCCCTCGTTCAGGTATC 60.159 54.545 0.00 0.00 41.51 2.24
187 188 1.831736 CCTTGTCCCTCGTTCAGGTAT 59.168 52.381 0.00 0.00 41.51 2.73
188 189 1.263356 CCTTGTCCCTCGTTCAGGTA 58.737 55.000 0.00 0.00 41.51 3.08
189 190 0.763223 ACCTTGTCCCTCGTTCAGGT 60.763 55.000 0.00 0.00 41.51 4.00
190 191 0.037232 GACCTTGTCCCTCGTTCAGG 60.037 60.000 0.00 0.00 43.01 3.86
191 192 0.679505 TGACCTTGTCCCTCGTTCAG 59.320 55.000 0.00 0.00 0.00 3.02
192 193 1.124780 TTGACCTTGTCCCTCGTTCA 58.875 50.000 0.00 0.00 0.00 3.18
193 194 1.509703 GTTGACCTTGTCCCTCGTTC 58.490 55.000 0.00 0.00 0.00 3.95
194 195 0.249741 CGTTGACCTTGTCCCTCGTT 60.250 55.000 0.00 0.00 0.00 3.85
195 196 1.366366 CGTTGACCTTGTCCCTCGT 59.634 57.895 0.00 0.00 0.00 4.18
196 197 1.374252 CCGTTGACCTTGTCCCTCG 60.374 63.158 0.00 0.00 0.00 4.63
197 198 0.602905 CACCGTTGACCTTGTCCCTC 60.603 60.000 0.00 0.00 0.00 4.30
198 199 1.450211 CACCGTTGACCTTGTCCCT 59.550 57.895 0.00 0.00 0.00 4.20
199 200 1.599797 CCACCGTTGACCTTGTCCC 60.600 63.158 0.00 0.00 0.00 4.46
200 201 1.147600 ACCACCGTTGACCTTGTCC 59.852 57.895 0.00 0.00 0.00 4.02
201 202 1.164041 CCACCACCGTTGACCTTGTC 61.164 60.000 0.00 0.00 0.00 3.18
202 203 1.153046 CCACCACCGTTGACCTTGT 60.153 57.895 0.00 0.00 0.00 3.16
203 204 2.551912 GCCACCACCGTTGACCTTG 61.552 63.158 0.00 0.00 0.00 3.61
204 205 2.203294 GCCACCACCGTTGACCTT 60.203 61.111 0.00 0.00 0.00 3.50
205 206 4.619227 CGCCACCACCGTTGACCT 62.619 66.667 0.00 0.00 0.00 3.85
245 246 4.731612 ACCGCTCTGCTGCTGACG 62.732 66.667 17.53 17.53 0.00 4.35
246 247 2.813042 GACCGCTCTGCTGCTGAC 60.813 66.667 5.03 2.73 0.00 3.51
247 248 4.074526 GGACCGCTCTGCTGCTGA 62.075 66.667 8.95 8.95 0.00 4.26
268 269 3.997064 CTCCGCTCCTTGTCCGCAG 62.997 68.421 0.00 0.00 0.00 5.18
269 270 4.069232 CTCCGCTCCTTGTCCGCA 62.069 66.667 0.00 0.00 0.00 5.69
271 272 4.821589 GGCTCCGCTCCTTGTCCG 62.822 72.222 0.00 0.00 0.00 4.79
272 273 4.821589 CGGCTCCGCTCCTTGTCC 62.822 72.222 0.00 0.00 0.00 4.02
273 274 4.821589 CCGGCTCCGCTCCTTGTC 62.822 72.222 2.18 0.00 38.24 3.18
294 295 4.292178 GATGGAGCGCCGGAGAGG 62.292 72.222 10.31 0.00 44.97 3.69
295 296 4.637489 CGATGGAGCGCCGGAGAG 62.637 72.222 10.31 0.00 36.79 3.20
319 320 1.439644 CTCTCGACTTGGGCCTAGC 59.560 63.158 15.16 7.07 0.00 3.42
320 321 1.323271 TGCTCTCGACTTGGGCCTAG 61.323 60.000 13.66 13.66 0.00 3.02
321 322 1.304962 TGCTCTCGACTTGGGCCTA 60.305 57.895 4.53 0.00 0.00 3.93
322 323 2.604686 TGCTCTCGACTTGGGCCT 60.605 61.111 4.53 0.00 0.00 5.19
323 324 2.125350 CTGCTCTCGACTTGGGCC 60.125 66.667 0.00 0.00 0.00 5.80
324 325 2.125350 CCTGCTCTCGACTTGGGC 60.125 66.667 0.00 0.00 0.00 5.36
325 326 1.515020 CTCCTGCTCTCGACTTGGG 59.485 63.158 0.00 0.00 0.00 4.12
326 327 1.254284 ACCTCCTGCTCTCGACTTGG 61.254 60.000 0.00 0.00 0.00 3.61
327 328 0.108898 CACCTCCTGCTCTCGACTTG 60.109 60.000 0.00 0.00 0.00 3.16
328 329 1.254284 CCACCTCCTGCTCTCGACTT 61.254 60.000 0.00 0.00 0.00 3.01
329 330 1.680651 CCACCTCCTGCTCTCGACT 60.681 63.158 0.00 0.00 0.00 4.18
330 331 2.888863 CCACCTCCTGCTCTCGAC 59.111 66.667 0.00 0.00 0.00 4.20
331 332 3.071206 GCCACCTCCTGCTCTCGA 61.071 66.667 0.00 0.00 0.00 4.04
332 333 4.504916 CGCCACCTCCTGCTCTCG 62.505 72.222 0.00 0.00 0.00 4.04
333 334 3.386237 ACGCCACCTCCTGCTCTC 61.386 66.667 0.00 0.00 0.00 3.20
334 335 3.699894 CACGCCACCTCCTGCTCT 61.700 66.667 0.00 0.00 0.00 4.09
335 336 4.767255 CCACGCCACCTCCTGCTC 62.767 72.222 0.00 0.00 0.00 4.26
338 339 4.704833 CACCCACGCCACCTCCTG 62.705 72.222 0.00 0.00 0.00 3.86
397 398 4.593864 GATGGGCTCCCGCGACTC 62.594 72.222 8.23 0.00 39.42 3.36
399 400 4.899239 CTGATGGGCTCCCGCGAC 62.899 72.222 8.23 0.00 39.42 5.19
401 402 4.899239 GACTGATGGGCTCCCGCG 62.899 72.222 0.00 0.00 39.42 6.46
402 403 4.899239 CGACTGATGGGCTCCCGC 62.899 72.222 0.00 0.00 39.42 6.13
403 404 4.899239 GCGACTGATGGGCTCCCG 62.899 72.222 0.00 0.00 39.42 5.14
404 405 4.554036 GGCGACTGATGGGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
405 406 3.785859 TGGCGACTGATGGGCTCC 61.786 66.667 0.00 0.00 0.00 4.70
406 407 2.512515 GTGGCGACTGATGGGCTC 60.513 66.667 0.00 0.00 0.00 4.70
407 408 4.457496 CGTGGCGACTGATGGGCT 62.457 66.667 0.00 0.00 0.00 5.19
409 410 4.838152 CCCGTGGCGACTGATGGG 62.838 72.222 0.00 0.00 0.00 4.00
420 421 1.028905 TTTGAGAAAAGTGCCCGTGG 58.971 50.000 0.00 0.00 0.00 4.94
421 422 2.034558 ACATTTGAGAAAAGTGCCCGTG 59.965 45.455 0.00 0.00 0.00 4.94
422 423 2.306847 ACATTTGAGAAAAGTGCCCGT 58.693 42.857 0.00 0.00 0.00 5.28
423 424 3.369546 AACATTTGAGAAAAGTGCCCG 57.630 42.857 0.00 0.00 0.00 6.13
424 425 4.988540 GGTTAACATTTGAGAAAAGTGCCC 59.011 41.667 8.10 0.00 0.00 5.36
425 426 4.679654 CGGTTAACATTTGAGAAAAGTGCC 59.320 41.667 8.10 0.00 0.00 5.01
426 427 4.679654 CCGGTTAACATTTGAGAAAAGTGC 59.320 41.667 8.10 0.00 0.00 4.40
427 428 5.219633 CCCGGTTAACATTTGAGAAAAGTG 58.780 41.667 8.10 0.00 0.00 3.16
428 429 4.279922 CCCCGGTTAACATTTGAGAAAAGT 59.720 41.667 8.10 0.00 0.00 2.66
429 430 4.279922 ACCCCGGTTAACATTTGAGAAAAG 59.720 41.667 8.10 0.00 0.00 2.27
430 431 4.038162 CACCCCGGTTAACATTTGAGAAAA 59.962 41.667 8.10 0.00 0.00 2.29
431 432 3.570550 CACCCCGGTTAACATTTGAGAAA 59.429 43.478 8.10 0.00 0.00 2.52
432 433 3.150767 CACCCCGGTTAACATTTGAGAA 58.849 45.455 8.10 0.00 0.00 2.87
433 434 2.372504 TCACCCCGGTTAACATTTGAGA 59.627 45.455 8.10 0.00 0.00 3.27
434 435 2.747446 CTCACCCCGGTTAACATTTGAG 59.253 50.000 8.10 7.56 0.00 3.02
435 436 2.785562 CTCACCCCGGTTAACATTTGA 58.214 47.619 8.10 1.78 0.00 2.69
436 437 1.201414 GCTCACCCCGGTTAACATTTG 59.799 52.381 8.10 0.00 0.00 2.32
437 438 1.074889 AGCTCACCCCGGTTAACATTT 59.925 47.619 8.10 0.00 0.00 2.32
438 439 0.696501 AGCTCACCCCGGTTAACATT 59.303 50.000 8.10 0.00 0.00 2.71
439 440 0.252197 GAGCTCACCCCGGTTAACAT 59.748 55.000 9.40 0.00 0.00 2.71
440 441 1.675219 GAGCTCACCCCGGTTAACA 59.325 57.895 9.40 0.00 0.00 2.41
441 442 1.078637 GGAGCTCACCCCGGTTAAC 60.079 63.158 17.19 0.00 0.00 2.01
442 443 1.128809 TTGGAGCTCACCCCGGTTAA 61.129 55.000 17.19 0.00 0.00 2.01
443 444 1.128809 TTTGGAGCTCACCCCGGTTA 61.129 55.000 17.19 0.00 0.00 2.85
444 445 2.002018 TTTTGGAGCTCACCCCGGTT 62.002 55.000 17.19 0.00 0.00 4.44
445 446 2.002018 TTTTTGGAGCTCACCCCGGT 62.002 55.000 17.19 0.00 0.00 5.28
446 447 0.611896 ATTTTTGGAGCTCACCCCGG 60.612 55.000 17.19 0.00 0.00 5.73
447 448 0.811281 GATTTTTGGAGCTCACCCCG 59.189 55.000 17.19 0.00 0.00 5.73
450 451 0.171231 GCGGATTTTTGGAGCTCACC 59.829 55.000 17.19 0.00 0.00 4.02
463 464 3.181501 CCATATTTGACGTTGTGCGGATT 60.182 43.478 0.00 0.00 46.52 3.01
468 469 2.477863 GCCTCCATATTTGACGTTGTGC 60.478 50.000 0.00 0.00 0.00 4.57
475 476 1.543429 CCCCGAGCCTCCATATTTGAC 60.543 57.143 0.00 0.00 0.00 3.18
476 477 0.764890 CCCCGAGCCTCCATATTTGA 59.235 55.000 0.00 0.00 0.00 2.69
477 478 0.890996 GCCCCGAGCCTCCATATTTG 60.891 60.000 0.00 0.00 34.35 2.32
478 479 1.062488 AGCCCCGAGCCTCCATATTT 61.062 55.000 0.00 0.00 45.47 1.40
527 529 2.070039 GTCATCCCACCCCGGATCA 61.070 63.158 0.73 0.00 40.88 2.92
529 531 3.161450 CGTCATCCCACCCCGGAT 61.161 66.667 0.73 0.00 43.79 4.18
532 534 3.075005 AGTCGTCATCCCACCCCG 61.075 66.667 0.00 0.00 0.00 5.73
569 575 5.036737 ACCGCAATTGAAATGATTTCGATC 58.963 37.500 18.32 8.40 41.73 3.69
573 579 8.539674 GGTAATAACCGCAATTGAAATGATTTC 58.460 33.333 10.34 10.85 36.76 2.17
595 601 9.828852 GTCGTTATAATTGTTTGATTGTGGTAA 57.171 29.630 0.00 0.00 0.00 2.85
598 604 8.450964 AGAGTCGTTATAATTGTTTGATTGTGG 58.549 33.333 0.00 0.00 0.00 4.17
599 605 9.265938 CAGAGTCGTTATAATTGTTTGATTGTG 57.734 33.333 0.00 0.00 0.00 3.33
731 748 2.777494 GTGATGTGTGAATGATGCGTG 58.223 47.619 0.00 0.00 0.00 5.34
737 754 2.289010 ACTGAGCGTGATGTGTGAATGA 60.289 45.455 0.00 0.00 0.00 2.57
758 775 5.163395 TGTGTGTACTGTTGTCTGTAATGGA 60.163 40.000 0.00 0.00 31.67 3.41
922 946 1.192428 AGGGAAGGAACTATTCGCGT 58.808 50.000 5.77 0.00 42.58 6.01
1111 1176 5.429957 AAGAAGTGATCAGTTGTTTGAGC 57.570 39.130 20.46 4.32 34.19 4.26
1123 1188 3.868077 AGCATACGCAGAAAGAAGTGATC 59.132 43.478 0.00 0.00 42.27 2.92
1159 1224 0.519175 GTGCATGCACACGTCGATTC 60.519 55.000 39.12 13.39 45.53 2.52
1232 1297 2.048222 TTCGACCTTGCGCCTGAG 60.048 61.111 4.18 0.00 0.00 3.35
1241 1306 0.608640 CTGGGCAGTACTTCGACCTT 59.391 55.000 6.65 0.00 0.00 3.50
1292 1357 3.488090 GCCGACGTACTTGCAGCC 61.488 66.667 0.00 0.00 0.00 4.85
1293 1358 2.736995 TGCCGACGTACTTGCAGC 60.737 61.111 0.00 0.00 0.00 5.25
1300 1374 4.130281 GCGCAAGTGCCGACGTAC 62.130 66.667 0.30 0.00 41.68 3.67
1338 1412 1.602311 GAAGGGATCATCGCAGCAAT 58.398 50.000 4.26 0.00 0.00 3.56
1348 1422 1.351017 GTGGAACTGTGGAAGGGATCA 59.649 52.381 0.00 0.00 0.00 2.92
1370 1447 4.735132 ATCGGTGTCGGTGGCACG 62.735 66.667 12.17 7.33 37.70 5.34
1371 1448 3.118454 CATCGGTGTCGGTGGCAC 61.118 66.667 9.70 9.70 43.26 5.01
1373 1450 3.365291 TAGCATCGGTGTCGGTGGC 62.365 63.158 0.00 0.00 46.71 5.01
1374 1451 1.226974 CTAGCATCGGTGTCGGTGG 60.227 63.158 0.00 0.00 46.71 4.61
1376 1453 0.385751 CATCTAGCATCGGTGTCGGT 59.614 55.000 0.00 0.00 36.95 4.69
1377 1454 0.668535 TCATCTAGCATCGGTGTCGG 59.331 55.000 0.00 0.00 36.95 4.79
1378 1455 2.227626 AGATCATCTAGCATCGGTGTCG 59.772 50.000 0.00 0.00 37.82 4.35
1379 1456 3.005261 ACAGATCATCTAGCATCGGTGTC 59.995 47.826 0.00 0.00 0.00 3.67
1380 1457 2.961741 ACAGATCATCTAGCATCGGTGT 59.038 45.455 0.00 0.00 0.00 4.16
1385 1462 7.783090 TCAAAAGAACAGATCATCTAGCATC 57.217 36.000 0.00 0.00 0.00 3.91
1388 1465 7.783090 TCATCAAAAGAACAGATCATCTAGC 57.217 36.000 0.00 0.00 0.00 3.42
1398 1475 8.123575 GTCTGATCATCATCATCAAAAGAACAG 58.876 37.037 0.00 0.00 38.42 3.16
1400 1477 7.124471 CGTCTGATCATCATCATCAAAAGAAC 58.876 38.462 0.00 0.00 38.42 3.01
1403 1482 5.560375 GCCGTCTGATCATCATCATCAAAAG 60.560 44.000 0.00 0.00 38.42 2.27
1409 1488 3.766068 AAGCCGTCTGATCATCATCAT 57.234 42.857 0.00 0.00 38.42 2.45
1429 1508 8.507249 GCTTAGATTTCTCTGCTTTGACTTTTA 58.493 33.333 0.00 0.00 32.66 1.52
1432 1511 6.237154 AGCTTAGATTTCTCTGCTTTGACTT 58.763 36.000 2.61 0.00 33.14 3.01
1452 1531 1.282157 CTGGGTGGTAAAGGCTAGCTT 59.718 52.381 15.72 3.40 0.00 3.74
1466 1546 1.614903 ACATGCAACATTGTCTGGGTG 59.385 47.619 0.00 0.00 0.00 4.61
1476 1556 1.180029 GGAGAGCCAACATGCAACAT 58.820 50.000 0.00 0.00 0.00 2.71
1499 1579 4.857037 GGCAAAACTTCCGCTTACAATTAG 59.143 41.667 0.00 0.00 0.00 1.73
1505 1585 3.049912 CAAAGGCAAAACTTCCGCTTAC 58.950 45.455 0.00 0.00 0.00 2.34
1523 1603 0.179004 ACAAGATGGTGTCGGCCAAA 60.179 50.000 2.24 0.00 42.48 3.28
1524 1604 0.888736 CACAAGATGGTGTCGGCCAA 60.889 55.000 2.24 0.00 42.48 4.52
1525 1605 1.302431 CACAAGATGGTGTCGGCCA 60.302 57.895 2.24 0.00 43.48 5.36
1526 1606 2.040544 CCACAAGATGGTGTCGGCC 61.041 63.158 0.00 0.00 44.46 6.13
1527 1607 3.578456 CCACAAGATGGTGTCGGC 58.422 61.111 0.00 0.00 44.46 5.54
1559 1647 4.102210 AGAATATGAAGGCTCTTGCTGCTA 59.898 41.667 0.00 0.00 39.59 3.49
1560 1648 3.117963 AGAATATGAAGGCTCTTGCTGCT 60.118 43.478 0.00 0.00 39.59 4.24
1561 1649 3.212685 AGAATATGAAGGCTCTTGCTGC 58.787 45.455 0.00 0.00 39.59 5.25
1562 1650 4.706035 AGAGAATATGAAGGCTCTTGCTG 58.294 43.478 0.00 0.00 34.23 4.41
1563 1651 5.011943 CCTAGAGAATATGAAGGCTCTTGCT 59.988 44.000 0.00 0.00 38.56 3.91
1564 1652 5.221621 ACCTAGAGAATATGAAGGCTCTTGC 60.222 44.000 0.00 0.00 38.56 4.01
1565 1653 6.418057 ACCTAGAGAATATGAAGGCTCTTG 57.582 41.667 0.00 0.00 38.56 3.02
1566 1654 5.242838 CGACCTAGAGAATATGAAGGCTCTT 59.757 44.000 0.00 0.00 38.56 2.85
1567 1655 4.764823 CGACCTAGAGAATATGAAGGCTCT 59.235 45.833 0.00 0.00 40.54 4.09
1571 1659 6.392625 TTGACGACCTAGAGAATATGAAGG 57.607 41.667 0.00 0.00 0.00 3.46
1581 1669 9.751542 ATTAGTGATTATTTTGACGACCTAGAG 57.248 33.333 0.00 0.00 0.00 2.43
1622 1710 7.254319 GGCGAATCTCTTATCGTGTTATTTTCA 60.254 37.037 0.00 0.00 41.01 2.69
1623 1711 7.064064 GGCGAATCTCTTATCGTGTTATTTTC 58.936 38.462 0.00 0.00 41.01 2.29
1632 1720 2.628178 TGGATGGCGAATCTCTTATCGT 59.372 45.455 0.00 0.00 41.01 3.73
1634 1722 2.999355 GCTGGATGGCGAATCTCTTATC 59.001 50.000 0.00 0.00 35.43 1.75
1635 1723 2.289945 GGCTGGATGGCGAATCTCTTAT 60.290 50.000 0.00 0.00 35.43 1.73
1643 1731 1.002430 GATATGAGGCTGGATGGCGAA 59.998 52.381 0.00 0.00 46.88 4.70
1654 1742 9.064706 CCTCCATAAATTATGATGATATGAGGC 57.935 37.037 14.10 0.00 38.45 4.70
1660 1748 7.932134 AGCACCCTCCATAAATTATGATGATA 58.068 34.615 14.10 0.00 38.45 2.15
1663 1751 6.506500 GAGCACCCTCCATAAATTATGATG 57.493 41.667 14.10 6.43 38.45 3.07
1684 1772 1.345741 ACATGTGGGCTCGATATGGAG 59.654 52.381 10.20 10.20 37.11 3.86
1686 1774 1.345741 AGACATGTGGGCTCGATATGG 59.654 52.381 1.15 0.00 0.00 2.74
1693 1781 4.037208 CCAAATATGAAGACATGTGGGCTC 59.963 45.833 1.15 0.00 37.87 4.70
1695 1783 3.953612 TCCAAATATGAAGACATGTGGGC 59.046 43.478 1.15 0.00 37.87 5.36
1699 1787 4.885907 CAGCCTCCAAATATGAAGACATGT 59.114 41.667 0.00 0.00 37.87 3.21
1702 1790 3.371917 CCCAGCCTCCAAATATGAAGACA 60.372 47.826 0.00 0.00 0.00 3.41
1715 1803 3.160478 AAACCAACCCCCAGCCTCC 62.160 63.158 0.00 0.00 0.00 4.30
1718 1806 1.458588 TTCAAACCAACCCCCAGCC 60.459 57.895 0.00 0.00 0.00 4.85
1719 1807 2.049435 CTTCAAACCAACCCCCAGC 58.951 57.895 0.00 0.00 0.00 4.85
1722 1810 3.047735 CGCTTCAAACCAACCCCC 58.952 61.111 0.00 0.00 0.00 5.40
1725 1813 2.729491 GCGCGCTTCAAACCAACC 60.729 61.111 26.67 0.00 0.00 3.77
1726 1814 1.725973 GAGCGCGCTTCAAACCAAC 60.726 57.895 36.87 15.35 0.00 3.77
1727 1815 2.637025 GAGCGCGCTTCAAACCAA 59.363 55.556 36.87 0.00 0.00 3.67
1728 1816 3.353836 GGAGCGCGCTTCAAACCA 61.354 61.111 36.87 0.00 0.00 3.67
1729 1817 2.583685 GATGGAGCGCGCTTCAAACC 62.584 60.000 42.86 33.06 34.85 3.27
1735 1823 2.590007 GATGGATGGAGCGCGCTT 60.590 61.111 36.87 20.80 0.00 4.68
1738 1826 1.864862 GATTGATGGATGGAGCGCG 59.135 57.895 0.00 0.00 0.00 6.86
1740 1828 1.143305 GACGATTGATGGATGGAGCG 58.857 55.000 0.00 0.00 0.00 5.03
1755 1843 0.038618 CGTTCCTCACATGTGGACGA 60.039 55.000 25.16 14.78 37.43 4.20
1757 1845 2.736144 TACGTTCCTCACATGTGGAC 57.264 50.000 25.16 16.50 37.43 4.02
1758 1846 2.829120 TGATACGTTCCTCACATGTGGA 59.171 45.455 25.16 13.27 36.07 4.02
1761 1849 5.344743 AAGATGATACGTTCCTCACATGT 57.655 39.130 0.00 0.00 0.00 3.21
1770 1858 4.920640 TGAGGAGGAAGATGATACGTTC 57.079 45.455 0.00 0.00 0.00 3.95
1771 1859 4.141914 GGTTGAGGAGGAAGATGATACGTT 60.142 45.833 0.00 0.00 0.00 3.99
1772 1860 3.385111 GGTTGAGGAGGAAGATGATACGT 59.615 47.826 0.00 0.00 0.00 3.57
1773 1861 3.639094 AGGTTGAGGAGGAAGATGATACG 59.361 47.826 0.00 0.00 0.00 3.06
1774 1862 5.606505 GAAGGTTGAGGAGGAAGATGATAC 58.393 45.833 0.00 0.00 0.00 2.24
1775 1863 4.342378 CGAAGGTTGAGGAGGAAGATGATA 59.658 45.833 0.00 0.00 0.00 2.15
1776 1864 3.133721 CGAAGGTTGAGGAGGAAGATGAT 59.866 47.826 0.00 0.00 0.00 2.45
1777 1865 2.497675 CGAAGGTTGAGGAGGAAGATGA 59.502 50.000 0.00 0.00 0.00 2.92
1778 1866 2.497675 TCGAAGGTTGAGGAGGAAGATG 59.502 50.000 0.00 0.00 0.00 2.90
1779 1867 2.498078 GTCGAAGGTTGAGGAGGAAGAT 59.502 50.000 0.00 0.00 0.00 2.40
1780 1868 1.893801 GTCGAAGGTTGAGGAGGAAGA 59.106 52.381 0.00 0.00 0.00 2.87
1781 1869 1.402984 CGTCGAAGGTTGAGGAGGAAG 60.403 57.143 0.00 0.00 0.00 3.46
1782 1870 0.601558 CGTCGAAGGTTGAGGAGGAA 59.398 55.000 0.00 0.00 0.00 3.36
1783 1871 0.538977 ACGTCGAAGGTTGAGGAGGA 60.539 55.000 0.00 0.00 0.00 3.71
1784 1872 0.388649 CACGTCGAAGGTTGAGGAGG 60.389 60.000 0.00 0.00 0.00 4.30
1792 1880 0.898789 AGATGGTCCACGTCGAAGGT 60.899 55.000 0.00 0.00 40.15 3.50
1797 1885 1.459592 GACAAAAGATGGTCCACGTCG 59.540 52.381 0.00 0.00 40.15 5.12
1805 1893 5.253096 ACCATTAGTAGGGACAAAAGATGGT 59.747 40.000 0.00 0.00 33.23 3.55
1810 1898 4.331968 TGCACCATTAGTAGGGACAAAAG 58.668 43.478 0.00 0.00 0.00 2.27
1829 1917 0.678684 CTGATGCCATGGTCACTGCA 60.679 55.000 14.67 3.86 38.23 4.41
1832 1920 0.994247 TTCCTGATGCCATGGTCACT 59.006 50.000 14.67 2.73 0.00 3.41
1835 1923 0.734889 CGTTTCCTGATGCCATGGTC 59.265 55.000 14.67 4.33 0.00 4.02
1836 1924 0.038166 ACGTTTCCTGATGCCATGGT 59.962 50.000 14.67 0.00 0.00 3.55
1837 1925 0.452987 CACGTTTCCTGATGCCATGG 59.547 55.000 7.63 7.63 0.00 3.66
1839 1927 2.183409 GCACGTTTCCTGATGCCAT 58.817 52.632 0.00 0.00 31.71 4.40
1840 1928 3.667087 GCACGTTTCCTGATGCCA 58.333 55.556 0.00 0.00 31.71 4.92
1842 1930 0.527565 ATTGGCACGTTTCCTGATGC 59.472 50.000 5.34 0.00 37.35 3.91
1843 1931 4.433186 TTAATTGGCACGTTTCCTGATG 57.567 40.909 5.34 0.00 0.00 3.07
1844 1932 4.142182 CCATTAATTGGCACGTTTCCTGAT 60.142 41.667 5.34 0.00 39.09 2.90
1845 1933 3.192422 CCATTAATTGGCACGTTTCCTGA 59.808 43.478 5.34 0.00 39.09 3.86
1846 1934 3.510719 CCATTAATTGGCACGTTTCCTG 58.489 45.455 5.34 0.00 39.09 3.86
1847 1935 3.866883 CCATTAATTGGCACGTTTCCT 57.133 42.857 5.34 0.00 39.09 3.36
1862 1950 4.709261 TGGCACACGGTGTCAACCATTA 62.709 50.000 18.35 2.37 45.44 1.90
1864 1952 2.616797 TGGCACACGGTGTCAACCAT 62.617 55.000 18.35 0.00 45.44 3.55
1865 1953 3.330992 TGGCACACGGTGTCAACCA 62.331 57.895 18.35 18.35 45.44 3.67
1866 1954 2.515057 TGGCACACGGTGTCAACC 60.515 61.111 11.54 13.39 45.44 3.77
1874 1962 1.006571 ACGAGTAGTTGGCACACGG 60.007 57.895 0.00 0.00 39.29 4.94
1881 1969 0.389948 GAGTGGCCACGAGTAGTTGG 60.390 60.000 29.68 0.00 36.20 3.77
1916 2004 5.221165 GGTAACATATAAACATGGTGGGCAC 60.221 44.000 0.00 0.00 0.00 5.01
1917 2005 4.890581 GGTAACATATAAACATGGTGGGCA 59.109 41.667 0.00 0.00 0.00 5.36
1922 2011 9.930158 AAATGGTAGGTAACATATAAACATGGT 57.070 29.630 0.00 0.00 41.41 3.55
1948 2037 5.825151 TGGCGATGACCATTTTATATTCACA 59.175 36.000 0.00 0.00 33.75 3.58
1949 2038 6.312399 TGGCGATGACCATTTTATATTCAC 57.688 37.500 0.00 0.00 33.75 3.18
1961 2050 0.037447 TTCAACCATGGCGATGACCA 59.963 50.000 13.04 0.00 45.82 4.02
1966 2055 1.474077 GAGCTTTTCAACCATGGCGAT 59.526 47.619 13.04 0.00 0.00 4.58
1968 2057 0.597568 TGAGCTTTTCAACCATGGCG 59.402 50.000 13.04 3.06 31.34 5.69
1981 2070 1.600076 CAGTGCAGGCTGTGAGCTT 60.600 57.895 17.16 0.00 41.99 3.74
1990 2079 3.203546 CTGTGTTGGCAGTGCAGGC 62.204 63.158 18.61 6.27 0.00 4.85
2000 2089 0.527565 GCTATGGGCAACTGTGTTGG 59.472 55.000 11.64 0.00 41.35 3.77
2014 2103 5.066593 GTCATAAAGGAGAAAGGGGCTATG 58.933 45.833 0.00 0.00 0.00 2.23
2027 2116 5.357878 GGAAGCAACATGATGTCATAAAGGA 59.642 40.000 0.00 0.00 34.26 3.36
2028 2117 5.450965 GGGAAGCAACATGATGTCATAAAGG 60.451 44.000 0.00 0.00 34.26 3.11
2032 2122 3.202818 AGGGGAAGCAACATGATGTCATA 59.797 43.478 0.00 0.00 34.26 2.15
2036 2126 1.076024 ACAGGGGAAGCAACATGATGT 59.924 47.619 0.00 0.00 0.00 3.06
2038 2128 1.355381 TCACAGGGGAAGCAACATGAT 59.645 47.619 0.00 0.00 0.00 2.45
2044 2134 0.843309 TCTGTTCACAGGGGAAGCAA 59.157 50.000 7.11 0.00 43.91 3.91
2045 2135 1.067295 ATCTGTTCACAGGGGAAGCA 58.933 50.000 7.11 0.00 43.91 3.91
2053 2143 6.320171 CAATCTAGCCAAAATCTGTTCACAG 58.680 40.000 0.02 0.02 45.08 3.66
2057 2147 4.706962 ACCCAATCTAGCCAAAATCTGTTC 59.293 41.667 0.00 0.00 0.00 3.18
2058 2148 4.463891 CACCCAATCTAGCCAAAATCTGTT 59.536 41.667 0.00 0.00 0.00 3.16
2059 2149 4.019174 CACCCAATCTAGCCAAAATCTGT 58.981 43.478 0.00 0.00 0.00 3.41
2060 2150 3.181483 GCACCCAATCTAGCCAAAATCTG 60.181 47.826 0.00 0.00 0.00 2.90
2061 2151 3.026694 GCACCCAATCTAGCCAAAATCT 58.973 45.455 0.00 0.00 0.00 2.40
2062 2152 2.101415 GGCACCCAATCTAGCCAAAATC 59.899 50.000 0.00 0.00 46.26 2.17
2063 2153 2.110578 GGCACCCAATCTAGCCAAAAT 58.889 47.619 0.00 0.00 46.26 1.82
2064 2154 1.555967 GGCACCCAATCTAGCCAAAA 58.444 50.000 0.00 0.00 46.26 2.44
2065 2155 3.281332 GGCACCCAATCTAGCCAAA 57.719 52.632 0.00 0.00 46.26 3.28
2071 2161 2.016393 CTCGAGCGGCACCCAATCTA 62.016 60.000 0.00 0.00 0.00 1.98
2102 2223 2.546162 GCGGCCTCTAGGACATAAAGTC 60.546 54.545 0.00 0.00 46.09 3.01
2105 2226 0.387929 CGCGGCCTCTAGGACATAAA 59.612 55.000 0.00 0.00 46.09 1.40
2125 2246 0.421495 TCAAGGGAAGGATCCTCCCA 59.579 55.000 33.43 20.16 45.90 4.37
2126 2247 1.423161 CATCAAGGGAAGGATCCTCCC 59.577 57.143 28.84 28.84 45.77 4.30
2137 2258 0.547471 TCAGGGCACTCATCAAGGGA 60.547 55.000 0.00 0.00 0.00 4.20
2148 2269 3.515602 ATGGGATTCTAATCAGGGCAC 57.484 47.619 5.15 0.00 37.15 5.01
2151 2272 5.940617 TGTGTTATGGGATTCTAATCAGGG 58.059 41.667 5.15 0.00 37.15 4.45
2152 2273 7.226441 TCATGTGTTATGGGATTCTAATCAGG 58.774 38.462 5.15 0.00 37.15 3.86
2153 2274 8.859236 ATCATGTGTTATGGGATTCTAATCAG 57.141 34.615 5.15 0.00 37.15 2.90
2156 2277 9.911788 GGATATCATGTGTTATGGGATTCTAAT 57.088 33.333 4.83 0.00 0.00 1.73
2159 2280 7.333779 TGGATATCATGTGTTATGGGATTCT 57.666 36.000 4.83 0.00 0.00 2.40
2165 2286 5.311265 AGTGCTGGATATCATGTGTTATGG 58.689 41.667 4.83 0.00 0.00 2.74
2188 2321 3.895041 TCATACGGGATCTGCACATTCTA 59.105 43.478 0.00 0.00 0.00 2.10
2189 2322 2.700371 TCATACGGGATCTGCACATTCT 59.300 45.455 0.00 0.00 0.00 2.40
2193 2326 1.485124 ACTCATACGGGATCTGCACA 58.515 50.000 0.00 0.00 0.00 4.57
2196 2329 2.490115 CTCCTACTCATACGGGATCTGC 59.510 54.545 0.00 0.00 0.00 4.26
2199 2332 3.349022 CCTCTCCTACTCATACGGGATC 58.651 54.545 0.00 0.00 0.00 3.36
2230 2363 1.837439 TGGTGCCCGATATGAGTTTCT 59.163 47.619 0.00 0.00 0.00 2.52
2232 2365 1.280710 TGTGGTGCCCGATATGAGTTT 59.719 47.619 0.00 0.00 0.00 2.66
2255 2388 4.272018 CCTTAACAGAGATGCGATGGAAAG 59.728 45.833 0.00 0.00 0.00 2.62
2258 2391 3.031013 TCCTTAACAGAGATGCGATGGA 58.969 45.455 0.00 0.00 0.00 3.41
2261 2394 3.034635 ACCTCCTTAACAGAGATGCGAT 58.965 45.455 0.00 0.00 32.86 4.58
2264 2397 3.265791 CACACCTCCTTAACAGAGATGC 58.734 50.000 0.21 0.00 26.54 3.91
2280 2413 2.270850 TGGCGCTAATCCCACACC 59.729 61.111 7.64 0.00 0.00 4.16
2302 2435 1.810030 GAACGATCGAGGTGTGGGC 60.810 63.158 24.34 0.00 0.00 5.36
2319 2452 2.448926 TGAAGATTTTGTCGAGCCGA 57.551 45.000 0.00 0.00 0.00 5.54
2321 2454 2.726066 CGCTTGAAGATTTTGTCGAGCC 60.726 50.000 0.00 0.00 45.05 4.70
2322 2455 2.096218 ACGCTTGAAGATTTTGTCGAGC 60.096 45.455 0.00 3.28 44.60 5.03
2324 2457 3.122948 GCTACGCTTGAAGATTTTGTCGA 59.877 43.478 0.00 0.00 0.00 4.20
2325 2458 3.120683 TGCTACGCTTGAAGATTTTGTCG 60.121 43.478 0.00 0.00 0.00 4.35
2353 2486 1.748122 CCATCTGCAGCGCCTTCTT 60.748 57.895 9.47 0.00 0.00 2.52
2354 2487 2.124819 CCATCTGCAGCGCCTTCT 60.125 61.111 9.47 0.00 0.00 2.85
2356 2489 2.124819 CTCCATCTGCAGCGCCTT 60.125 61.111 9.47 0.00 0.00 4.35
2361 2494 0.461693 GGTCACTCTCCATCTGCAGC 60.462 60.000 9.47 0.00 0.00 5.25
2362 2495 0.179116 CGGTCACTCTCCATCTGCAG 60.179 60.000 7.63 7.63 0.00 4.41
2366 2499 1.608717 GGTGCGGTCACTCTCCATCT 61.609 60.000 3.32 0.00 42.72 2.90
2368 2501 1.267574 ATGGTGCGGTCACTCTCCAT 61.268 55.000 0.00 0.00 42.72 3.41
2376 2509 1.971167 GAGCCAAATGGTGCGGTCA 60.971 57.895 0.71 0.00 37.57 4.02
2377 2510 0.392461 TAGAGCCAAATGGTGCGGTC 60.392 55.000 0.71 0.00 37.57 4.79
2378 2511 0.255890 ATAGAGCCAAATGGTGCGGT 59.744 50.000 0.71 0.00 37.57 5.68
2381 2514 4.202050 CCTTGTAATAGAGCCAAATGGTGC 60.202 45.833 0.71 0.00 37.57 5.01
2382 2515 4.202050 GCCTTGTAATAGAGCCAAATGGTG 60.202 45.833 0.71 0.00 37.57 4.17
2383 2516 3.954258 GCCTTGTAATAGAGCCAAATGGT 59.046 43.478 0.71 0.00 37.57 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.