Multiple sequence alignment - TraesCS7B01G034500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G034500 chr7B 100.000 2324 0 0 1 2324 33903667 33901344 0.000000e+00 4292
1 TraesCS7B01G034500 chr7D 88.732 1420 107 22 2 1403 84256357 84254973 0.000000e+00 1687
2 TraesCS7B01G034500 chr7A 84.615 1118 74 36 328 1419 85610579 85609534 0.000000e+00 1022
3 TraesCS7B01G034500 chr7A 78.378 666 74 38 1416 2064 85609479 85608867 3.650000e-98 368
4 TraesCS7B01G034500 chr7A 80.952 231 16 9 54 279 85610863 85610656 8.600000e-35 158
5 TraesCS7B01G034500 chr1B 91.262 618 43 4 111 727 325985484 325984877 0.000000e+00 832
6 TraesCS7B01G034500 chr1B 81.481 243 29 9 1419 1647 343953817 343954057 3.940000e-43 185
7 TraesCS7B01G034500 chr2A 84.244 476 55 14 324 794 282267210 282267670 1.640000e-121 446
8 TraesCS7B01G034500 chr6A 83.000 500 61 16 300 794 553136605 553136125 4.590000e-117 431
9 TraesCS7B01G034500 chr4A 89.305 187 19 1 1 186 304540573 304540759 1.390000e-57 233
10 TraesCS7B01G034500 chr3B 81.707 246 23 12 1419 1647 559103975 559103735 3.940000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G034500 chr7B 33901344 33903667 2323 True 4292 4292 100.000 1 2324 1 chr7B.!!$R1 2323
1 TraesCS7B01G034500 chr7D 84254973 84256357 1384 True 1687 1687 88.732 2 1403 1 chr7D.!!$R1 1401
2 TraesCS7B01G034500 chr7A 85608867 85610863 1996 True 516 1022 81.315 54 2064 3 chr7A.!!$R1 2010
3 TraesCS7B01G034500 chr1B 325984877 325985484 607 True 832 832 91.262 111 727 1 chr1B.!!$R1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
572 627 0.178068 AGGGTGCTAGCATGTAACCG 59.822 55.0 22.51 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2024 2177 0.034756 TCACACATCTCCGGGTTGTG 59.965 55.0 22.53 22.53 45.82 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.138247 CAGATCGCCTTTGCTTGCC 59.862 57.895 0.00 0.00 34.43 4.52
34 35 2.571216 CCTTTGCTTGCCTGCAGCT 61.571 57.895 8.66 0.00 44.27 4.24
39 40 4.711949 CTTGCCTGCAGCTCCGGT 62.712 66.667 8.66 0.00 44.23 5.28
40 41 4.269523 TTGCCTGCAGCTCCGGTT 62.270 61.111 8.66 0.00 44.23 4.44
49 50 2.904866 GCTCCGGTTGCCACAACA 60.905 61.111 12.13 0.00 0.00 3.33
173 175 9.076781 TCAGTTCCACTCATGAAAATGAAATTA 57.923 29.630 5.72 0.00 33.67 1.40
245 247 5.982356 TCAGTTAGGATTGTTGAGATCCAG 58.018 41.667 5.97 0.00 44.50 3.86
307 352 4.444720 AGAAACGTTTCTTCAGACTAAGCG 59.555 41.667 32.60 0.00 44.70 4.68
374 419 5.316167 TGGTGATAAGCTTTCATGTTGACT 58.684 37.500 3.20 0.00 0.00 3.41
404 459 2.095617 TGCGATCTTTGTAGTTCGTCGA 60.096 45.455 0.00 0.00 42.70 4.20
539 594 5.462398 CCGATCCATTGTTAGTTAGTACTGC 59.538 44.000 5.39 0.00 35.78 4.40
572 627 0.178068 AGGGTGCTAGCATGTAACCG 59.822 55.000 22.51 0.00 0.00 4.44
574 629 1.006832 GGTGCTAGCATGTAACCGTG 58.993 55.000 22.51 0.00 0.00 4.94
607 662 9.527157 TTTATGGTGATAAGATGACCTTTTTCA 57.473 29.630 0.00 0.00 37.44 2.69
608 663 9.527157 TTATGGTGATAAGATGACCTTTTTCAA 57.473 29.630 0.00 0.00 37.44 2.69
609 664 7.214467 TGGTGATAAGATGACCTTTTTCAAC 57.786 36.000 0.00 0.00 37.44 3.18
610 665 7.004086 TGGTGATAAGATGACCTTTTTCAACT 58.996 34.615 0.00 0.00 37.44 3.16
611 666 8.160765 TGGTGATAAGATGACCTTTTTCAACTA 58.839 33.333 0.00 0.00 37.44 2.24
612 667 8.451748 GGTGATAAGATGACCTTTTTCAACTAC 58.548 37.037 0.00 0.00 33.88 2.73
613 668 9.220767 GTGATAAGATGACCTTTTTCAACTACT 57.779 33.333 0.00 0.00 36.34 2.57
614 669 9.436957 TGATAAGATGACCTTTTTCAACTACTC 57.563 33.333 0.00 0.00 36.34 2.59
615 670 8.794335 ATAAGATGACCTTTTTCAACTACTCC 57.206 34.615 0.00 0.00 36.34 3.85
616 671 5.238583 AGATGACCTTTTTCAACTACTCCG 58.761 41.667 0.00 0.00 27.49 4.63
637 692 8.985805 ACTCCGTAGTTTGTTTACTCTATTTTG 58.014 33.333 0.00 0.00 29.00 2.44
643 698 3.703921 TGTTTACTCTATTTTGGGGGCC 58.296 45.455 0.00 0.00 0.00 5.80
747 803 1.694150 TCTGGGTTTCAGAGTCTGGTG 59.306 52.381 19.99 0.00 46.71 4.17
748 804 0.764890 TGGGTTTCAGAGTCTGGTGG 59.235 55.000 19.99 0.00 31.51 4.61
749 805 1.056660 GGGTTTCAGAGTCTGGTGGA 58.943 55.000 19.99 0.00 31.51 4.02
750 806 1.270893 GGGTTTCAGAGTCTGGTGGAC 60.271 57.143 19.99 12.45 44.80 4.02
796 852 3.435671 AGTTTGATTCGAGGCGTAAAAGG 59.564 43.478 0.00 0.00 0.00 3.11
812 868 6.588373 GCGTAAAAGGGCAATTTAAAATCAGA 59.412 34.615 0.00 0.00 0.00 3.27
856 912 6.264518 ACTTAACGGAAATGGTGAAAATCTGT 59.735 34.615 0.00 0.00 0.00 3.41
869 925 5.855395 GTGAAAATCTGTTGAGATGCTTGTC 59.145 40.000 0.00 0.00 39.04 3.18
873 929 1.128136 CTGTTGAGATGCTTGTCGCTG 59.872 52.381 0.00 0.00 40.11 5.18
898 961 2.578021 ACCTTCTGATGGCCTAATGTGT 59.422 45.455 3.32 0.00 0.00 3.72
900 963 3.209410 CTTCTGATGGCCTAATGTGTCC 58.791 50.000 3.32 0.00 0.00 4.02
922 985 5.462068 TCCATGCTTTTCTATATCACGTTCG 59.538 40.000 0.00 0.00 0.00 3.95
1041 1109 3.244422 CCTTAGTTGTCACTGGCTTGGTA 60.244 47.826 0.00 0.00 34.06 3.25
1044 1112 4.634012 AGTTGTCACTGGCTTGGTAATA 57.366 40.909 0.00 0.00 0.00 0.98
1053 1121 2.430332 TGGCTTGGTAATATTTGCTGGC 59.570 45.455 0.00 0.00 0.00 4.85
1054 1122 2.695147 GGCTTGGTAATATTTGCTGGCT 59.305 45.455 0.00 0.00 0.00 4.75
1089 1157 7.255486 GCATTTCCCTTCTACTTTGTGTAAGTT 60.255 37.037 0.00 0.00 44.73 2.66
1090 1158 8.630037 CATTTCCCTTCTACTTTGTGTAAGTTT 58.370 33.333 0.00 0.00 44.73 2.66
1123 1195 5.604010 CTTTCTAGCACTGGTTGAGAAAG 57.396 43.478 14.66 14.66 43.80 2.62
1131 1203 5.248477 AGCACTGGTTGAGAAAGGTAGATAA 59.752 40.000 0.00 0.00 0.00 1.75
1134 1206 6.090898 CACTGGTTGAGAAAGGTAGATAAACG 59.909 42.308 0.00 0.00 0.00 3.60
1138 1210 6.426025 GGTTGAGAAAGGTAGATAAACGTGTT 59.574 38.462 0.00 0.00 0.00 3.32
1152 1224 0.590682 CGTGTTGTGTGCATTGGCTA 59.409 50.000 0.00 0.00 41.91 3.93
1159 1231 0.958091 TGTGCATTGGCTAGCGTTTT 59.042 45.000 9.00 0.00 41.91 2.43
1187 1259 6.829298 TGTGTAACCTTTGTCCATTTCTTACA 59.171 34.615 0.00 0.00 34.36 2.41
1188 1260 7.504238 TGTGTAACCTTTGTCCATTTCTTACAT 59.496 33.333 0.00 0.00 34.36 2.29
1221 1293 5.357257 TCAAAGAACAGGCCTATTATCGAC 58.643 41.667 3.98 0.00 0.00 4.20
1263 1335 0.252103 AGGCTACTTTCCGAGGACCA 60.252 55.000 0.00 0.00 0.00 4.02
1333 1405 8.557450 AGTACCCCAAGAAGTGATATGTATTTT 58.443 33.333 0.00 0.00 0.00 1.82
1374 1446 0.597568 TTCAACGGGCATGCAGAAAG 59.402 50.000 21.36 6.18 0.00 2.62
1421 1558 1.884075 TAACCGGCTCGTGATGTGCT 61.884 55.000 0.00 0.00 37.26 4.40
1437 1574 1.900245 TGCTGAACACATGCATCTGT 58.100 45.000 1.23 1.23 0.00 3.41
1450 1587 2.337583 GCATCTGTGCGTAGTTCTTCA 58.662 47.619 0.00 0.00 42.28 3.02
1452 1589 3.000724 GCATCTGTGCGTAGTTCTTCATC 59.999 47.826 0.00 0.00 42.28 2.92
1488 1625 4.771590 TTGATCATTTCTTGTGCTCCAC 57.228 40.909 0.00 0.00 34.56 4.02
1492 1629 3.141398 TCATTTCTTGTGCTCCACTGAC 58.859 45.455 0.00 0.00 35.11 3.51
1495 1632 3.386768 TTCTTGTGCTCCACTGACTAC 57.613 47.619 0.00 0.00 35.11 2.73
1509 1646 0.444260 GACTACTCCTTGCAAAGCGC 59.556 55.000 0.00 0.00 44.44 5.92
1511 1648 1.275291 ACTACTCCTTGCAAAGCGCTA 59.725 47.619 12.05 0.00 44.44 4.26
1575 1725 6.668541 TGTCAAAGCTACTCATATTGCTTC 57.331 37.500 0.00 0.00 43.80 3.86
1579 1729 3.126831 AGCTACTCATATTGCTTCGCAC 58.873 45.455 0.00 0.00 38.71 5.34
1583 1733 5.177511 GCTACTCATATTGCTTCGCACATTA 59.822 40.000 0.00 0.00 38.71 1.90
1584 1734 6.128445 GCTACTCATATTGCTTCGCACATTAT 60.128 38.462 0.00 0.00 38.71 1.28
1585 1735 7.063426 GCTACTCATATTGCTTCGCACATTATA 59.937 37.037 0.00 0.00 38.71 0.98
1586 1736 7.356641 ACTCATATTGCTTCGCACATTATAG 57.643 36.000 0.00 0.00 38.71 1.31
1696 1846 9.678260 GAATATATATCCCATAATGGATCTGCC 57.322 37.037 0.81 0.00 44.12 4.85
1864 2014 3.384146 TCTTCTTTTCATGTGCAAGGCAA 59.616 39.130 0.00 0.00 41.47 4.52
1883 2033 3.610114 GCAAGTGCACTGTCGATTTCATT 60.610 43.478 22.49 0.00 41.59 2.57
1887 2037 4.393062 AGTGCACTGTCGATTTCATTAAGG 59.607 41.667 20.97 0.00 0.00 2.69
1890 2040 5.935206 TGCACTGTCGATTTCATTAAGGTAA 59.065 36.000 0.00 0.00 0.00 2.85
1895 2045 8.936864 ACTGTCGATTTCATTAAGGTAAGAAAG 58.063 33.333 0.00 0.00 33.96 2.62
1898 2048 6.317893 TCGATTTCATTAAGGTAAGAAAGGCC 59.682 38.462 0.00 0.00 33.96 5.19
1902 2052 6.834168 TCATTAAGGTAAGAAAGGCCAAAG 57.166 37.500 5.01 0.00 0.00 2.77
1907 2057 2.489722 GGTAAGAAAGGCCAAAGCAGAG 59.510 50.000 5.01 0.00 42.56 3.35
1910 2060 1.143684 AGAAAGGCCAAAGCAGAGTGA 59.856 47.619 5.01 0.00 42.56 3.41
1916 2066 1.612726 GCCAAAGCAGAGTGACCTGAT 60.613 52.381 5.45 0.00 39.53 2.90
1917 2067 2.787994 CCAAAGCAGAGTGACCTGATT 58.212 47.619 5.45 2.67 43.69 2.57
1919 2069 4.326826 CCAAAGCAGAGTGACCTGATTTA 58.673 43.478 13.90 0.00 46.94 1.40
1920 2070 4.154918 CCAAAGCAGAGTGACCTGATTTAC 59.845 45.833 13.90 0.00 46.94 2.01
1921 2071 4.623932 AAGCAGAGTGACCTGATTTACA 57.376 40.909 5.45 0.00 39.46 2.41
1922 2072 3.931578 AGCAGAGTGACCTGATTTACAC 58.068 45.455 5.45 0.00 36.29 2.90
1923 2073 2.668457 GCAGAGTGACCTGATTTACACG 59.332 50.000 5.45 0.00 38.15 4.49
1924 2074 3.254060 CAGAGTGACCTGATTTACACGG 58.746 50.000 0.00 0.00 38.15 4.94
1925 2075 3.056821 CAGAGTGACCTGATTTACACGGA 60.057 47.826 0.00 0.00 38.15 4.69
1928 2078 4.062991 AGTGACCTGATTTACACGGAAAC 58.937 43.478 0.00 0.00 38.15 2.78
1929 2079 4.062991 GTGACCTGATTTACACGGAAACT 58.937 43.478 0.00 0.00 0.00 2.66
1930 2080 5.011329 AGTGACCTGATTTACACGGAAACTA 59.989 40.000 0.00 0.00 38.15 2.24
1931 2081 5.697633 GTGACCTGATTTACACGGAAACTAA 59.302 40.000 0.00 0.00 0.00 2.24
1932 2082 5.929992 TGACCTGATTTACACGGAAACTAAG 59.070 40.000 0.00 0.00 0.00 2.18
1933 2083 4.694037 ACCTGATTTACACGGAAACTAAGC 59.306 41.667 0.00 0.00 0.00 3.09
1934 2084 4.094442 CCTGATTTACACGGAAACTAAGCC 59.906 45.833 0.00 0.00 0.00 4.35
1965 2115 4.949856 ACACATGATTGATTAAGGGACCAC 59.050 41.667 0.00 0.00 0.00 4.16
1966 2116 4.339247 CACATGATTGATTAAGGGACCACC 59.661 45.833 0.00 0.00 40.67 4.61
1986 2139 0.463620 GTGCAACCCACAACCATGTT 59.536 50.000 0.00 0.00 44.06 2.71
1992 2145 2.676748 ACCCACAACCATGTTGACATT 58.323 42.857 13.46 0.00 37.82 2.71
2011 2164 4.278419 ACATTAGCCAACTCAAACTTCACC 59.722 41.667 0.00 0.00 0.00 4.02
2021 2174 2.126467 CAAACTTCACCGCCAACATTG 58.874 47.619 0.00 0.00 0.00 2.82
2024 2177 2.490993 CTTCACCGCCAACATTGCCC 62.491 60.000 0.00 0.00 0.00 5.36
2032 2185 1.006337 CAACATTGCCCACAACCCG 60.006 57.895 0.00 0.00 38.99 5.28
2043 2196 0.034756 CACAACCCGGAGATGTGTGA 59.965 55.000 19.77 0.00 39.60 3.58
2050 2203 0.459237 CGGAGATGTGTGAGTGAGCC 60.459 60.000 0.00 0.00 0.00 4.70
2074 2227 1.370609 GGAGACGCCCTTTAAGAAGC 58.629 55.000 0.00 0.00 0.00 3.86
2075 2228 1.338769 GGAGACGCCCTTTAAGAAGCA 60.339 52.381 7.50 0.00 0.00 3.91
2076 2229 2.633488 GAGACGCCCTTTAAGAAGCAT 58.367 47.619 7.50 0.00 0.00 3.79
2077 2230 2.609916 GAGACGCCCTTTAAGAAGCATC 59.390 50.000 7.50 2.34 0.00 3.91
2078 2231 1.327764 GACGCCCTTTAAGAAGCATCG 59.672 52.381 7.50 0.00 0.00 3.84
2079 2232 1.338769 ACGCCCTTTAAGAAGCATCGT 60.339 47.619 7.50 0.00 0.00 3.73
2080 2233 1.327764 CGCCCTTTAAGAAGCATCGTC 59.672 52.381 7.50 0.00 0.00 4.20
2081 2234 2.356135 GCCCTTTAAGAAGCATCGTCA 58.644 47.619 0.00 0.00 0.00 4.35
2082 2235 2.945668 GCCCTTTAAGAAGCATCGTCAT 59.054 45.455 0.00 0.00 0.00 3.06
2083 2236 3.002759 GCCCTTTAAGAAGCATCGTCATC 59.997 47.826 0.00 0.00 0.00 2.92
2084 2237 3.246226 CCCTTTAAGAAGCATCGTCATCG 59.754 47.826 0.00 0.00 38.55 3.84
2085 2238 3.246226 CCTTTAAGAAGCATCGTCATCGG 59.754 47.826 0.00 0.00 37.69 4.18
2086 2239 1.852942 TAAGAAGCATCGTCATCGGC 58.147 50.000 0.00 0.00 37.69 5.54
2087 2240 0.108186 AAGAAGCATCGTCATCGGCA 60.108 50.000 0.00 0.00 37.69 5.69
2088 2241 0.105593 AGAAGCATCGTCATCGGCAT 59.894 50.000 0.00 0.00 37.69 4.40
2089 2242 0.940126 GAAGCATCGTCATCGGCATT 59.060 50.000 0.00 0.00 37.69 3.56
2090 2243 0.940126 AAGCATCGTCATCGGCATTC 59.060 50.000 0.00 0.00 37.69 2.67
2091 2244 0.105593 AGCATCGTCATCGGCATTCT 59.894 50.000 0.00 0.00 37.69 2.40
2092 2245 0.940126 GCATCGTCATCGGCATTCTT 59.060 50.000 0.00 0.00 37.69 2.52
2093 2246 1.070309 GCATCGTCATCGGCATTCTTC 60.070 52.381 0.00 0.00 37.69 2.87
2094 2247 1.190984 CATCGTCATCGGCATTCTTCG 59.809 52.381 0.00 0.00 37.69 3.79
2095 2248 0.454196 TCGTCATCGGCATTCTTCGA 59.546 50.000 0.00 0.00 39.79 3.71
2096 2249 0.572590 CGTCATCGGCATTCTTCGAC 59.427 55.000 0.00 0.00 38.25 4.20
2097 2250 0.931005 GTCATCGGCATTCTTCGACC 59.069 55.000 0.00 0.00 38.25 4.79
2098 2251 0.179084 TCATCGGCATTCTTCGACCC 60.179 55.000 0.00 0.00 38.25 4.46
2099 2252 1.146263 ATCGGCATTCTTCGACCCC 59.854 57.895 0.00 0.00 38.25 4.95
2100 2253 2.325393 ATCGGCATTCTTCGACCCCC 62.325 60.000 0.00 0.00 38.25 5.40
2115 2268 2.283809 CCCCCACCCCACAAAACA 59.716 61.111 0.00 0.00 0.00 2.83
2116 2269 1.383248 CCCCCACCCCACAAAACAA 60.383 57.895 0.00 0.00 0.00 2.83
2117 2270 0.983378 CCCCCACCCCACAAAACAAA 60.983 55.000 0.00 0.00 0.00 2.83
2118 2271 0.179234 CCCCACCCCACAAAACAAAC 59.821 55.000 0.00 0.00 0.00 2.93
2119 2272 0.179234 CCCACCCCACAAAACAAACC 59.821 55.000 0.00 0.00 0.00 3.27
2120 2273 0.179097 CCACCCCACAAAACAAACCG 60.179 55.000 0.00 0.00 0.00 4.44
2121 2274 0.818296 CACCCCACAAAACAAACCGA 59.182 50.000 0.00 0.00 0.00 4.69
2122 2275 1.204941 CACCCCACAAAACAAACCGAA 59.795 47.619 0.00 0.00 0.00 4.30
2123 2276 1.205179 ACCCCACAAAACAAACCGAAC 59.795 47.619 0.00 0.00 0.00 3.95
2124 2277 1.471851 CCCCACAAAACAAACCGAACC 60.472 52.381 0.00 0.00 0.00 3.62
2125 2278 1.204941 CCCACAAAACAAACCGAACCA 59.795 47.619 0.00 0.00 0.00 3.67
2126 2279 2.353803 CCCACAAAACAAACCGAACCAA 60.354 45.455 0.00 0.00 0.00 3.67
2127 2280 2.926838 CCACAAAACAAACCGAACCAAG 59.073 45.455 0.00 0.00 0.00 3.61
2128 2281 2.926838 CACAAAACAAACCGAACCAAGG 59.073 45.455 0.00 0.00 0.00 3.61
2129 2282 1.930503 CAAAACAAACCGAACCAAGGC 59.069 47.619 0.00 0.00 0.00 4.35
2130 2283 1.480789 AAACAAACCGAACCAAGGCT 58.519 45.000 0.00 0.00 0.00 4.58
2131 2284 1.480789 AACAAACCGAACCAAGGCTT 58.519 45.000 0.00 0.00 0.00 4.35
2132 2285 1.029681 ACAAACCGAACCAAGGCTTC 58.970 50.000 0.00 0.00 0.00 3.86
2133 2286 0.313987 CAAACCGAACCAAGGCTTCC 59.686 55.000 0.00 0.00 0.00 3.46
2134 2287 1.170290 AAACCGAACCAAGGCTTCCG 61.170 55.000 0.00 0.00 0.00 4.30
2135 2288 3.431725 CCGAACCAAGGCTTCCGC 61.432 66.667 0.00 0.00 0.00 5.54
2152 2305 4.641645 CCAGAGCCGCCCACACAA 62.642 66.667 0.00 0.00 0.00 3.33
2153 2306 3.052082 CAGAGCCGCCCACACAAG 61.052 66.667 0.00 0.00 0.00 3.16
2163 2316 4.988598 CACACAAGCTCCGCCGGT 62.989 66.667 1.63 0.00 0.00 5.28
2164 2317 4.250305 ACACAAGCTCCGCCGGTT 62.250 61.111 1.63 0.00 0.00 4.44
2165 2318 2.978010 CACAAGCTCCGCCGGTTT 60.978 61.111 1.63 0.00 0.00 3.27
2166 2319 2.203294 ACAAGCTCCGCCGGTTTT 60.203 55.556 1.63 0.00 0.00 2.43
2167 2320 1.071814 ACAAGCTCCGCCGGTTTTA 59.928 52.632 1.63 0.00 0.00 1.52
2168 2321 1.232621 ACAAGCTCCGCCGGTTTTAC 61.233 55.000 1.63 0.00 0.00 2.01
2169 2322 1.673337 AAGCTCCGCCGGTTTTACC 60.673 57.895 1.63 0.00 34.05 2.85
2170 2323 2.046604 GCTCCGCCGGTTTTACCT 60.047 61.111 1.63 0.00 35.66 3.08
2171 2324 1.218854 GCTCCGCCGGTTTTACCTA 59.781 57.895 1.63 0.00 35.66 3.08
2172 2325 0.391528 GCTCCGCCGGTTTTACCTAA 60.392 55.000 1.63 0.00 35.66 2.69
2173 2326 1.744798 GCTCCGCCGGTTTTACCTAAT 60.745 52.381 1.63 0.00 35.66 1.73
2174 2327 2.635714 CTCCGCCGGTTTTACCTAATT 58.364 47.619 1.63 0.00 35.66 1.40
2175 2328 3.011818 CTCCGCCGGTTTTACCTAATTT 58.988 45.455 1.63 0.00 35.66 1.82
2176 2329 3.419943 TCCGCCGGTTTTACCTAATTTT 58.580 40.909 1.63 0.00 35.66 1.82
2177 2330 4.583871 TCCGCCGGTTTTACCTAATTTTA 58.416 39.130 1.63 0.00 35.66 1.52
2178 2331 4.394610 TCCGCCGGTTTTACCTAATTTTAC 59.605 41.667 1.63 0.00 35.66 2.01
2179 2332 4.395854 CCGCCGGTTTTACCTAATTTTACT 59.604 41.667 1.90 0.00 35.66 2.24
2180 2333 5.584251 CCGCCGGTTTTACCTAATTTTACTA 59.416 40.000 1.90 0.00 35.66 1.82
2181 2334 6.093357 CCGCCGGTTTTACCTAATTTTACTAA 59.907 38.462 1.90 0.00 35.66 2.24
2182 2335 7.201723 CCGCCGGTTTTACCTAATTTTACTAAT 60.202 37.037 1.90 0.00 35.66 1.73
2183 2336 8.183536 CGCCGGTTTTACCTAATTTTACTAATT 58.816 33.333 1.90 0.00 35.66 1.40
2184 2337 9.292846 GCCGGTTTTACCTAATTTTACTAATTG 57.707 33.333 1.90 0.00 35.66 2.32
2193 2346 9.030452 ACCTAATTTTACTAATTGTTCCATGCA 57.970 29.630 0.00 0.00 0.00 3.96
2198 2351 9.723601 ATTTTACTAATTGTTCCATGCATTTGT 57.276 25.926 0.00 0.00 0.00 2.83
2199 2352 8.755696 TTTACTAATTGTTCCATGCATTTGTC 57.244 30.769 0.00 0.00 0.00 3.18
2200 2353 6.594788 ACTAATTGTTCCATGCATTTGTCT 57.405 33.333 0.00 0.00 0.00 3.41
2201 2354 7.701539 ACTAATTGTTCCATGCATTTGTCTA 57.298 32.000 0.00 0.00 0.00 2.59
2202 2355 7.765307 ACTAATTGTTCCATGCATTTGTCTAG 58.235 34.615 0.00 0.00 0.00 2.43
2203 2356 6.594788 AATTGTTCCATGCATTTGTCTAGT 57.405 33.333 0.00 0.00 0.00 2.57
2204 2357 6.594788 ATTGTTCCATGCATTTGTCTAGTT 57.405 33.333 0.00 0.00 0.00 2.24
2205 2358 6.403866 TTGTTCCATGCATTTGTCTAGTTT 57.596 33.333 0.00 0.00 0.00 2.66
2206 2359 6.403866 TGTTCCATGCATTTGTCTAGTTTT 57.596 33.333 0.00 0.00 0.00 2.43
2207 2360 7.517614 TGTTCCATGCATTTGTCTAGTTTTA 57.482 32.000 0.00 0.00 0.00 1.52
2208 2361 7.367285 TGTTCCATGCATTTGTCTAGTTTTAC 58.633 34.615 0.00 0.00 0.00 2.01
2209 2362 7.013750 TGTTCCATGCATTTGTCTAGTTTTACA 59.986 33.333 0.00 0.00 0.00 2.41
2210 2363 7.517614 TCCATGCATTTGTCTAGTTTTACAA 57.482 32.000 0.00 0.00 33.92 2.41
2211 2364 7.592938 TCCATGCATTTGTCTAGTTTTACAAG 58.407 34.615 0.00 0.00 36.96 3.16
2212 2365 6.308766 CCATGCATTTGTCTAGTTTTACAAGC 59.691 38.462 0.00 0.00 36.96 4.01
2213 2366 5.448438 TGCATTTGTCTAGTTTTACAAGCG 58.552 37.500 0.00 0.00 36.96 4.68
2214 2367 5.237561 TGCATTTGTCTAGTTTTACAAGCGA 59.762 36.000 0.00 0.00 36.96 4.93
2215 2368 5.564127 GCATTTGTCTAGTTTTACAAGCGAC 59.436 40.000 0.00 0.00 36.96 5.19
2216 2369 5.662211 TTTGTCTAGTTTTACAAGCGACC 57.338 39.130 0.00 0.00 36.96 4.79
2217 2370 3.311106 TGTCTAGTTTTACAAGCGACCG 58.689 45.455 0.00 0.00 0.00 4.79
2218 2371 3.243501 TGTCTAGTTTTACAAGCGACCGT 60.244 43.478 0.00 0.00 0.00 4.83
2219 2372 3.120782 GTCTAGTTTTACAAGCGACCGTG 59.879 47.826 0.00 0.00 0.00 4.94
2220 2373 1.223187 AGTTTTACAAGCGACCGTGG 58.777 50.000 0.00 0.00 0.00 4.94
2221 2374 1.202557 AGTTTTACAAGCGACCGTGGA 60.203 47.619 0.00 0.00 0.00 4.02
2222 2375 1.598601 GTTTTACAAGCGACCGTGGAA 59.401 47.619 0.00 0.00 0.00 3.53
2223 2376 2.172851 TTTACAAGCGACCGTGGAAT 57.827 45.000 0.00 0.00 0.00 3.01
2224 2377 3.316071 TTTACAAGCGACCGTGGAATA 57.684 42.857 0.00 0.00 0.00 1.75
2225 2378 3.316071 TTACAAGCGACCGTGGAATAA 57.684 42.857 0.00 0.00 0.00 1.40
2226 2379 2.396590 ACAAGCGACCGTGGAATAAT 57.603 45.000 0.00 0.00 0.00 1.28
2227 2380 2.006888 ACAAGCGACCGTGGAATAATG 58.993 47.619 0.00 0.00 0.00 1.90
2228 2381 2.276201 CAAGCGACCGTGGAATAATGA 58.724 47.619 0.00 0.00 0.00 2.57
2229 2382 1.935933 AGCGACCGTGGAATAATGAC 58.064 50.000 0.00 0.00 0.00 3.06
2230 2383 1.206132 AGCGACCGTGGAATAATGACA 59.794 47.619 0.00 0.00 0.00 3.58
2231 2384 2.004017 GCGACCGTGGAATAATGACAA 58.996 47.619 0.00 0.00 0.00 3.18
2232 2385 2.222953 GCGACCGTGGAATAATGACAAC 60.223 50.000 0.00 0.00 0.00 3.32
2233 2386 2.997303 CGACCGTGGAATAATGACAACA 59.003 45.455 0.00 0.00 0.00 3.33
2234 2387 3.621268 CGACCGTGGAATAATGACAACAT 59.379 43.478 0.00 0.00 38.50 2.71
2235 2388 4.494035 CGACCGTGGAATAATGACAACATG 60.494 45.833 0.00 0.00 36.79 3.21
2236 2389 3.694072 ACCGTGGAATAATGACAACATGG 59.306 43.478 0.00 0.00 40.07 3.66
2237 2390 3.489059 CCGTGGAATAATGACAACATGGC 60.489 47.826 0.00 0.00 36.79 4.40
2238 2391 3.128415 CGTGGAATAATGACAACATGGCA 59.872 43.478 0.00 0.00 41.29 4.92
2239 2392 4.675510 GTGGAATAATGACAACATGGCAG 58.324 43.478 0.00 0.00 39.76 4.85
2240 2393 4.158394 GTGGAATAATGACAACATGGCAGT 59.842 41.667 0.00 0.00 39.76 4.40
2241 2394 4.771577 TGGAATAATGACAACATGGCAGTT 59.228 37.500 0.00 0.00 39.76 3.16
2242 2395 5.948758 TGGAATAATGACAACATGGCAGTTA 59.051 36.000 0.00 0.00 39.76 2.24
2243 2396 6.435591 TGGAATAATGACAACATGGCAGTTAA 59.564 34.615 0.00 0.00 39.76 2.01
2244 2397 6.974622 GGAATAATGACAACATGGCAGTTAAG 59.025 38.462 0.00 0.00 39.76 1.85
2245 2398 3.855689 ATGACAACATGGCAGTTAAGC 57.144 42.857 0.00 0.00 39.76 3.09
2246 2399 2.580962 TGACAACATGGCAGTTAAGCA 58.419 42.857 0.00 0.00 35.83 3.91
2247 2400 2.954989 TGACAACATGGCAGTTAAGCAA 59.045 40.909 0.00 0.00 35.83 3.91
2248 2401 3.382865 TGACAACATGGCAGTTAAGCAAA 59.617 39.130 0.00 0.00 35.83 3.68
2249 2402 3.716601 ACAACATGGCAGTTAAGCAAAC 58.283 40.909 0.00 0.00 38.46 2.93
2250 2403 3.059166 CAACATGGCAGTTAAGCAAACC 58.941 45.455 0.00 0.00 39.03 3.27
2251 2404 1.269448 ACATGGCAGTTAAGCAAACCG 59.731 47.619 0.00 0.00 39.03 4.44
2252 2405 0.243636 ATGGCAGTTAAGCAAACCGC 59.756 50.000 0.00 2.46 40.21 5.68
2253 2406 1.103987 TGGCAGTTAAGCAAACCGCA 61.104 50.000 11.00 0.00 42.30 5.69
2254 2407 0.031449 GGCAGTTAAGCAAACCGCAA 59.969 50.000 11.00 0.00 42.30 4.85
2255 2408 1.336795 GGCAGTTAAGCAAACCGCAAT 60.337 47.619 11.00 0.00 42.30 3.56
2256 2409 1.720852 GCAGTTAAGCAAACCGCAATG 59.279 47.619 5.55 0.00 46.13 2.82
2257 2410 1.720852 CAGTTAAGCAAACCGCAATGC 59.279 47.619 0.00 0.00 46.13 3.56
2258 2411 1.339610 AGTTAAGCAAACCGCAATGCA 59.660 42.857 5.91 0.00 44.95 3.96
2259 2412 2.131183 GTTAAGCAAACCGCAATGCAA 58.869 42.857 5.91 0.00 44.95 4.08
2260 2413 2.515926 TAAGCAAACCGCAATGCAAA 57.484 40.000 5.91 0.00 44.95 3.68
2261 2414 0.936600 AAGCAAACCGCAATGCAAAC 59.063 45.000 5.91 0.00 44.95 2.93
2262 2415 0.879839 AGCAAACCGCAATGCAAACC 60.880 50.000 5.91 0.00 44.95 3.27
2263 2416 1.840630 GCAAACCGCAATGCAAACCC 61.841 55.000 5.91 0.00 42.12 4.11
2264 2417 0.531532 CAAACCGCAATGCAAACCCA 60.532 50.000 5.91 0.00 0.00 4.51
2265 2418 0.179000 AAACCGCAATGCAAACCCAA 59.821 45.000 5.91 0.00 0.00 4.12
2266 2419 0.249826 AACCGCAATGCAAACCCAAG 60.250 50.000 5.91 0.00 0.00 3.61
2267 2420 2.028733 CCGCAATGCAAACCCAAGC 61.029 57.895 5.91 0.00 0.00 4.01
2268 2421 2.374226 CGCAATGCAAACCCAAGCG 61.374 57.895 5.91 0.00 37.12 4.68
2269 2422 1.006337 GCAATGCAAACCCAAGCGA 60.006 52.632 0.00 0.00 0.00 4.93
2270 2423 1.010419 GCAATGCAAACCCAAGCGAG 61.010 55.000 0.00 0.00 0.00 5.03
2271 2424 0.388907 CAATGCAAACCCAAGCGAGG 60.389 55.000 0.00 0.00 0.00 4.63
2272 2425 0.827507 AATGCAAACCCAAGCGAGGT 60.828 50.000 0.00 0.00 40.14 3.85
2273 2426 0.037590 ATGCAAACCCAAGCGAGGTA 59.962 50.000 0.00 0.00 36.27 3.08
2274 2427 0.179015 TGCAAACCCAAGCGAGGTAA 60.179 50.000 0.00 0.00 36.27 2.85
2275 2428 0.955905 GCAAACCCAAGCGAGGTAAA 59.044 50.000 0.00 0.00 36.27 2.01
2276 2429 1.338655 GCAAACCCAAGCGAGGTAAAA 59.661 47.619 0.00 0.00 36.27 1.52
2277 2430 2.029380 GCAAACCCAAGCGAGGTAAAAT 60.029 45.455 0.00 0.00 36.27 1.82
2278 2431 3.554129 GCAAACCCAAGCGAGGTAAAATT 60.554 43.478 0.00 0.00 36.27 1.82
2279 2432 4.627058 CAAACCCAAGCGAGGTAAAATTT 58.373 39.130 0.00 0.00 36.27 1.82
2280 2433 3.934457 ACCCAAGCGAGGTAAAATTTG 57.066 42.857 0.00 0.00 35.24 2.32
2281 2434 3.492337 ACCCAAGCGAGGTAAAATTTGA 58.508 40.909 0.00 0.00 35.24 2.69
2282 2435 4.086457 ACCCAAGCGAGGTAAAATTTGAT 58.914 39.130 0.00 0.00 35.24 2.57
2283 2436 4.526650 ACCCAAGCGAGGTAAAATTTGATT 59.473 37.500 0.00 0.00 35.24 2.57
2284 2437 5.011635 ACCCAAGCGAGGTAAAATTTGATTT 59.988 36.000 0.00 0.00 35.24 2.17
2285 2438 6.209788 ACCCAAGCGAGGTAAAATTTGATTTA 59.790 34.615 0.00 0.00 35.24 1.40
2286 2439 7.093509 ACCCAAGCGAGGTAAAATTTGATTTAT 60.094 33.333 0.00 0.00 35.24 1.40
2287 2440 7.222611 CCCAAGCGAGGTAAAATTTGATTTATG 59.777 37.037 0.00 0.00 0.00 1.90
2288 2441 7.254084 CCAAGCGAGGTAAAATTTGATTTATGC 60.254 37.037 0.00 0.00 0.00 3.14
2289 2442 6.273071 AGCGAGGTAAAATTTGATTTATGCC 58.727 36.000 0.00 0.00 0.00 4.40
2290 2443 5.173131 GCGAGGTAAAATTTGATTTATGCCG 59.827 40.000 0.00 0.00 0.00 5.69
2291 2444 6.491394 CGAGGTAAAATTTGATTTATGCCGA 58.509 36.000 0.00 0.00 0.00 5.54
2292 2445 7.138736 CGAGGTAAAATTTGATTTATGCCGAT 58.861 34.615 0.00 0.00 0.00 4.18
2293 2446 7.323656 CGAGGTAAAATTTGATTTATGCCGATC 59.676 37.037 0.00 0.00 0.00 3.69
2294 2447 8.237811 AGGTAAAATTTGATTTATGCCGATCT 57.762 30.769 0.00 0.00 0.00 2.75
2295 2448 8.137437 AGGTAAAATTTGATTTATGCCGATCTG 58.863 33.333 0.00 0.00 0.00 2.90
2296 2449 7.920682 GGTAAAATTTGATTTATGCCGATCTGT 59.079 33.333 0.00 0.00 0.00 3.41
2297 2450 9.301153 GTAAAATTTGATTTATGCCGATCTGTT 57.699 29.630 0.00 0.00 0.00 3.16
2298 2451 7.760131 AAATTTGATTTATGCCGATCTGTTG 57.240 32.000 0.00 0.00 0.00 3.33
2299 2452 3.969117 TGATTTATGCCGATCTGTTGC 57.031 42.857 0.00 0.00 0.00 4.17
2300 2453 3.544684 TGATTTATGCCGATCTGTTGCT 58.455 40.909 0.00 0.00 0.00 3.91
2301 2454 3.561310 TGATTTATGCCGATCTGTTGCTC 59.439 43.478 0.00 0.00 0.00 4.26
2302 2455 1.953559 TTATGCCGATCTGTTGCTCC 58.046 50.000 0.00 0.00 0.00 4.70
2303 2456 0.249447 TATGCCGATCTGTTGCTCCG 60.249 55.000 0.00 0.00 0.00 4.63
2304 2457 1.960040 ATGCCGATCTGTTGCTCCGA 61.960 55.000 0.00 0.00 0.00 4.55
2305 2458 1.447838 GCCGATCTGTTGCTCCGAA 60.448 57.895 0.00 0.00 0.00 4.30
2306 2459 1.424493 GCCGATCTGTTGCTCCGAAG 61.424 60.000 0.00 0.00 0.00 3.79
2318 2471 2.115266 CCGAAGGCAAACCCAGGT 59.885 61.111 0.00 0.00 46.14 4.00
2319 2472 2.268076 CCGAAGGCAAACCCAGGTG 61.268 63.158 0.00 0.00 46.14 4.00
2320 2473 1.228124 CGAAGGCAAACCCAGGTGA 60.228 57.895 0.00 0.00 36.11 4.02
2321 2474 1.237285 CGAAGGCAAACCCAGGTGAG 61.237 60.000 0.00 0.00 36.11 3.51
2322 2475 0.895559 GAAGGCAAACCCAGGTGAGG 60.896 60.000 0.00 0.00 36.11 3.86
2323 2476 2.991540 GGCAAACCCAGGTGAGGC 60.992 66.667 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.121019 GGCGATCTGTCTACGGCT 58.879 61.111 0.00 0.00 46.12 5.52
34 35 2.904866 GCTGTTGTGGCAACCGGA 60.905 61.111 9.46 0.00 0.00 5.14
70 71 2.998480 TCCAACCGGCGCCTAGAA 60.998 61.111 26.68 1.53 0.00 2.10
335 380 1.009829 ACCATCGCTCGAAATGAAGC 58.990 50.000 0.00 0.00 0.00 3.86
374 419 3.044235 ACAAAGATCGCACTGATGTCA 57.956 42.857 0.00 0.00 37.47 3.58
404 459 8.265055 TGAATAATTAACAGAGATCGAACCCTT 58.735 33.333 0.00 0.00 0.00 3.95
552 607 1.406887 CGGTTACATGCTAGCACCCTT 60.407 52.381 22.07 7.00 0.00 3.95
572 627 8.623903 TCATCTTATCACCATAAAAATCAGCAC 58.376 33.333 0.00 0.00 0.00 4.40
574 629 8.078596 GGTCATCTTATCACCATAAAAATCAGC 58.921 37.037 0.00 0.00 0.00 4.26
612 667 8.440833 CCAAAATAGAGTAAACAAACTACGGAG 58.559 37.037 0.00 0.00 0.00 4.63
613 668 7.388500 CCCAAAATAGAGTAAACAAACTACGGA 59.612 37.037 0.00 0.00 0.00 4.69
614 669 7.361457 CCCCAAAATAGAGTAAACAAACTACGG 60.361 40.741 0.00 0.00 0.00 4.02
615 670 7.361457 CCCCCAAAATAGAGTAAACAAACTACG 60.361 40.741 0.00 0.00 0.00 3.51
616 671 7.576287 GCCCCCAAAATAGAGTAAACAAACTAC 60.576 40.741 0.00 0.00 0.00 2.73
643 698 1.888436 TAGAGTGCCCGTCTGCCTTG 61.888 60.000 0.00 0.00 0.00 3.61
653 708 6.349300 TCTTAATGAAATCAGTAGAGTGCCC 58.651 40.000 0.00 0.00 0.00 5.36
747 803 0.745845 AATCCTGCTGACATGCGTCC 60.746 55.000 0.00 0.00 41.85 4.79
748 804 0.654683 GAATCCTGCTGACATGCGTC 59.345 55.000 0.00 0.00 42.93 5.19
749 805 0.036105 TGAATCCTGCTGACATGCGT 60.036 50.000 0.00 0.00 35.36 5.24
750 806 0.656259 CTGAATCCTGCTGACATGCG 59.344 55.000 0.00 0.00 35.36 4.73
751 807 1.747709 ACTGAATCCTGCTGACATGC 58.252 50.000 0.00 0.00 0.00 4.06
752 808 5.413833 ACTTAAACTGAATCCTGCTGACATG 59.586 40.000 0.00 0.00 0.00 3.21
753 809 5.564550 ACTTAAACTGAATCCTGCTGACAT 58.435 37.500 0.00 0.00 0.00 3.06
754 810 4.973168 ACTTAAACTGAATCCTGCTGACA 58.027 39.130 0.00 0.00 0.00 3.58
755 811 5.948992 AACTTAAACTGAATCCTGCTGAC 57.051 39.130 0.00 0.00 0.00 3.51
796 852 6.892310 AGCGAAATCTGATTTTAAATTGCC 57.108 33.333 16.14 1.44 31.47 4.52
846 902 5.334337 CGACAAGCATCTCAACAGATTTTCA 60.334 40.000 0.00 0.00 37.25 2.69
869 925 1.656652 CCATCAGAAGGTAACCAGCG 58.343 55.000 0.00 0.00 37.17 5.18
873 929 3.926058 TTAGGCCATCAGAAGGTAACC 57.074 47.619 5.01 0.00 37.17 2.85
898 961 5.462068 CGAACGTGATATAGAAAAGCATGGA 59.538 40.000 0.00 0.00 0.00 3.41
900 963 6.510746 TCGAACGTGATATAGAAAAGCATG 57.489 37.500 0.00 0.00 0.00 4.06
1053 1121 0.842635 AGGGAAATGCTAGGCCAGAG 59.157 55.000 5.01 2.20 0.00 3.35
1054 1122 1.212935 GAAGGGAAATGCTAGGCCAGA 59.787 52.381 5.01 0.00 0.00 3.86
1089 1157 6.205464 CCAGTGCTAGAAAGATGAGAAAACAA 59.795 38.462 0.00 0.00 0.00 2.83
1090 1158 5.702670 CCAGTGCTAGAAAGATGAGAAAACA 59.297 40.000 0.00 0.00 0.00 2.83
1123 1195 3.495377 TGCACACAACACGTTTATCTACC 59.505 43.478 0.00 0.00 0.00 3.18
1131 1203 0.527385 GCCAATGCACACAACACGTT 60.527 50.000 0.00 0.00 37.47 3.99
1134 1206 1.666888 GCTAGCCAATGCACACAACAC 60.667 52.381 2.29 0.00 41.13 3.32
1138 1210 0.888736 AACGCTAGCCAATGCACACA 60.889 50.000 9.66 0.00 41.13 3.72
1159 1231 7.176589 AGAAATGGACAAAGGTTACACAAAA 57.823 32.000 0.00 0.00 0.00 2.44
1174 1246 4.503714 TCCTGGGATGTAAGAAATGGAC 57.496 45.455 0.00 0.00 0.00 4.02
1187 1259 4.347607 CCTGTTCTTTGATTTCCTGGGAT 58.652 43.478 0.00 0.00 0.00 3.85
1188 1260 3.766545 CCTGTTCTTTGATTTCCTGGGA 58.233 45.455 0.00 0.00 0.00 4.37
1221 1293 1.004560 TGGCAGAGGCTTCGTTGAG 60.005 57.895 0.00 0.00 40.87 3.02
1263 1335 2.473816 CGCGATCCAGTGTTCACATAT 58.526 47.619 0.00 0.00 0.00 1.78
1333 1405 9.703892 TTGAAAAACAAAGAGAAAACAAGATGA 57.296 25.926 0.00 0.00 35.39 2.92
1374 1446 0.179018 ACAGGTTTCCACTCACTGGC 60.179 55.000 0.00 0.00 40.39 4.85
1388 1467 3.054655 AGCCGGTTATCAACATTACAGGT 60.055 43.478 1.90 0.00 31.60 4.00
1434 1571 3.990469 AGTTGATGAAGAACTACGCACAG 59.010 43.478 0.00 0.00 31.72 3.66
1437 1574 3.990092 ACAGTTGATGAAGAACTACGCA 58.010 40.909 0.00 0.00 32.27 5.24
1450 1587 4.455533 TGATCAAAAGCGCTTACAGTTGAT 59.544 37.500 32.48 32.48 38.17 2.57
1452 1589 4.145876 TGATCAAAAGCGCTTACAGTTG 57.854 40.909 25.33 22.70 0.00 3.16
1488 1625 1.728971 CGCTTTGCAAGGAGTAGTCAG 59.271 52.381 13.48 0.00 0.00 3.51
1554 1692 5.973651 CGAAGCAATATGAGTAGCTTTGA 57.026 39.130 7.32 0.00 46.49 2.69
1679 1829 5.801720 ATATTGGCAGATCCATTATGGGA 57.198 39.130 11.76 0.00 46.04 4.37
1680 1830 5.953548 TCAATATTGGCAGATCCATTATGGG 59.046 40.000 15.36 0.00 46.04 4.00
1681 1831 7.470935 TTCAATATTGGCAGATCCATTATGG 57.529 36.000 15.36 4.57 46.04 2.74
1682 1832 9.366216 CAATTCAATATTGGCAGATCCATTATG 57.634 33.333 15.36 0.00 46.04 1.90
1683 1833 8.537016 CCAATTCAATATTGGCAGATCCATTAT 58.463 33.333 15.36 0.00 46.04 1.28
1684 1834 7.898918 CCAATTCAATATTGGCAGATCCATTA 58.101 34.615 15.36 0.00 46.04 1.90
1685 1835 6.765403 CCAATTCAATATTGGCAGATCCATT 58.235 36.000 15.36 0.11 46.04 3.16
1686 1836 6.354794 CCAATTCAATATTGGCAGATCCAT 57.645 37.500 15.36 0.00 46.04 3.41
1687 1837 5.794726 CCAATTCAATATTGGCAGATCCA 57.205 39.130 15.36 0.00 41.62 3.41
1826 1976 9.720769 TGAAAAGAAGAAGACGATAAAACCTAT 57.279 29.630 0.00 0.00 0.00 2.57
1827 1977 9.720769 ATGAAAAGAAGAAGACGATAAAACCTA 57.279 29.630 0.00 0.00 0.00 3.08
1828 1978 8.507249 CATGAAAAGAAGAAGACGATAAAACCT 58.493 33.333 0.00 0.00 0.00 3.50
1829 1979 8.290325 ACATGAAAAGAAGAAGACGATAAAACC 58.710 33.333 0.00 0.00 0.00 3.27
1830 1980 9.107367 CACATGAAAAGAAGAAGACGATAAAAC 57.893 33.333 0.00 0.00 0.00 2.43
1831 1981 7.803189 GCACATGAAAAGAAGAAGACGATAAAA 59.197 33.333 0.00 0.00 0.00 1.52
1832 1982 7.041440 TGCACATGAAAAGAAGAAGACGATAAA 60.041 33.333 0.00 0.00 0.00 1.40
1833 1983 6.426633 TGCACATGAAAAGAAGAAGACGATAA 59.573 34.615 0.00 0.00 0.00 1.75
1834 1984 5.931724 TGCACATGAAAAGAAGAAGACGATA 59.068 36.000 0.00 0.00 0.00 2.92
1835 1985 4.756642 TGCACATGAAAAGAAGAAGACGAT 59.243 37.500 0.00 0.00 0.00 3.73
1836 1986 4.126437 TGCACATGAAAAGAAGAAGACGA 58.874 39.130 0.00 0.00 0.00 4.20
1837 1987 4.472691 TGCACATGAAAAGAAGAAGACG 57.527 40.909 0.00 0.00 0.00 4.18
1838 1988 5.218139 CCTTGCACATGAAAAGAAGAAGAC 58.782 41.667 0.00 0.00 0.00 3.01
1839 1989 4.261741 GCCTTGCACATGAAAAGAAGAAGA 60.262 41.667 0.00 0.00 0.00 2.87
1840 1990 3.985925 GCCTTGCACATGAAAAGAAGAAG 59.014 43.478 0.00 0.00 0.00 2.85
1846 1996 2.798283 CACTTGCCTTGCACATGAAAAG 59.202 45.455 0.00 0.00 38.71 2.27
1864 2014 4.393062 CCTTAATGAAATCGACAGTGCACT 59.607 41.667 15.25 15.25 0.00 4.40
1883 2033 4.079253 CTGCTTTGGCCTTTCTTACCTTA 58.921 43.478 3.32 0.00 37.74 2.69
1887 2037 3.057946 CACTCTGCTTTGGCCTTTCTTAC 60.058 47.826 3.32 0.00 37.74 2.34
1890 2040 1.143684 TCACTCTGCTTTGGCCTTTCT 59.856 47.619 3.32 0.00 37.74 2.52
1895 2045 1.073897 AGGTCACTCTGCTTTGGCC 59.926 57.895 0.00 0.00 37.81 5.36
1898 2048 4.756642 TGTAAATCAGGTCACTCTGCTTTG 59.243 41.667 5.75 0.00 34.99 2.77
1902 2052 2.668457 CGTGTAAATCAGGTCACTCTGC 59.332 50.000 0.00 0.00 34.91 4.26
1907 2057 4.062991 AGTTTCCGTGTAAATCAGGTCAC 58.937 43.478 0.00 0.00 0.00 3.67
1910 2060 4.694037 GCTTAGTTTCCGTGTAAATCAGGT 59.306 41.667 0.00 0.00 0.00 4.00
1916 2066 2.036992 TCCGGCTTAGTTTCCGTGTAAA 59.963 45.455 0.00 0.00 43.87 2.01
1917 2067 1.617850 TCCGGCTTAGTTTCCGTGTAA 59.382 47.619 0.00 0.00 43.87 2.41
1918 2068 1.203052 CTCCGGCTTAGTTTCCGTGTA 59.797 52.381 0.00 0.00 43.87 2.90
1919 2069 0.037605 CTCCGGCTTAGTTTCCGTGT 60.038 55.000 0.00 0.00 43.87 4.49
1920 2070 0.739813 CCTCCGGCTTAGTTTCCGTG 60.740 60.000 0.00 0.00 43.87 4.94
1921 2071 1.595357 CCTCCGGCTTAGTTTCCGT 59.405 57.895 0.00 0.00 43.87 4.69
1922 2072 1.814169 GCCTCCGGCTTAGTTTCCG 60.814 63.158 0.00 0.00 46.69 4.30
1923 2073 4.220413 GCCTCCGGCTTAGTTTCC 57.780 61.111 0.00 0.00 46.69 3.13
1933 2083 0.452987 CAATCATGTGTTGCCTCCGG 59.547 55.000 0.00 0.00 0.00 5.14
1934 2084 1.452110 TCAATCATGTGTTGCCTCCG 58.548 50.000 8.19 0.00 0.00 4.63
1935 2085 5.450965 CCTTAATCAATCATGTGTTGCCTCC 60.451 44.000 8.19 0.00 0.00 4.30
1936 2086 5.450965 CCCTTAATCAATCATGTGTTGCCTC 60.451 44.000 8.19 0.00 0.00 4.70
1937 2087 4.403432 CCCTTAATCAATCATGTGTTGCCT 59.597 41.667 8.19 2.48 0.00 4.75
1938 2088 4.402155 TCCCTTAATCAATCATGTGTTGCC 59.598 41.667 8.19 0.00 0.00 4.52
1939 2089 5.343249 GTCCCTTAATCAATCATGTGTTGC 58.657 41.667 8.19 0.00 0.00 4.17
1947 2097 2.574369 ACGGTGGTCCCTTAATCAATCA 59.426 45.455 0.00 0.00 0.00 2.57
1965 2115 2.199652 ATGGTTGTGGGTTGCACGG 61.200 57.895 0.00 0.00 0.00 4.94
1966 2116 1.007502 CATGGTTGTGGGTTGCACG 60.008 57.895 0.00 0.00 0.00 5.34
1986 2139 5.008613 GTGAAGTTTGAGTTGGCTAATGTCA 59.991 40.000 0.00 0.00 0.00 3.58
1992 2145 2.489971 CGGTGAAGTTTGAGTTGGCTA 58.510 47.619 0.00 0.00 0.00 3.93
2021 2174 2.438434 CATCTCCGGGTTGTGGGC 60.438 66.667 0.00 0.00 0.00 5.36
2024 2177 0.034756 TCACACATCTCCGGGTTGTG 59.965 55.000 22.53 22.53 45.82 3.33
2032 2185 0.107945 GGGCTCACTCACACATCTCC 60.108 60.000 0.00 0.00 0.00 3.71
2064 2217 3.302740 GCCGATGACGATGCTTCTTAAAG 60.303 47.826 0.00 0.00 42.66 1.85
2065 2218 2.607635 GCCGATGACGATGCTTCTTAAA 59.392 45.455 0.00 0.00 42.66 1.52
2066 2219 2.201732 GCCGATGACGATGCTTCTTAA 58.798 47.619 0.00 0.00 42.66 1.85
2067 2220 1.136110 TGCCGATGACGATGCTTCTTA 59.864 47.619 0.00 0.00 42.66 2.10
2068 2221 0.108186 TGCCGATGACGATGCTTCTT 60.108 50.000 0.00 0.00 42.66 2.52
2069 2222 0.105593 ATGCCGATGACGATGCTTCT 59.894 50.000 0.00 0.00 42.66 2.85
2070 2223 0.940126 AATGCCGATGACGATGCTTC 59.060 50.000 0.00 0.00 42.66 3.86
2071 2224 0.940126 GAATGCCGATGACGATGCTT 59.060 50.000 0.00 0.00 42.66 3.91
2072 2225 0.105593 AGAATGCCGATGACGATGCT 59.894 50.000 0.00 0.00 42.66 3.79
2073 2226 0.940126 AAGAATGCCGATGACGATGC 59.060 50.000 0.00 0.00 42.66 3.91
2074 2227 1.190984 CGAAGAATGCCGATGACGATG 59.809 52.381 0.00 0.00 42.66 3.84
2075 2228 1.067060 TCGAAGAATGCCGATGACGAT 59.933 47.619 0.00 0.00 42.66 3.73
2076 2229 0.454196 TCGAAGAATGCCGATGACGA 59.546 50.000 0.00 0.00 42.66 4.20
2077 2230 0.572590 GTCGAAGAATGCCGATGACG 59.427 55.000 0.00 0.00 39.69 4.35
2078 2231 0.931005 GGTCGAAGAATGCCGATGAC 59.069 55.000 0.00 0.00 39.69 3.06
2079 2232 0.179084 GGGTCGAAGAATGCCGATGA 60.179 55.000 0.00 0.00 39.69 2.92
2080 2233 1.160329 GGGGTCGAAGAATGCCGATG 61.160 60.000 0.00 0.00 39.69 3.84
2081 2234 1.146263 GGGGTCGAAGAATGCCGAT 59.854 57.895 0.00 0.00 39.69 4.18
2082 2235 2.582436 GGGGTCGAAGAATGCCGA 59.418 61.111 0.00 0.00 39.69 5.54
2083 2236 2.513897 GGGGGTCGAAGAATGCCG 60.514 66.667 0.00 0.00 39.69 5.69
2098 2251 0.983378 TTTGTTTTGTGGGGTGGGGG 60.983 55.000 0.00 0.00 0.00 5.40
2099 2252 0.179234 GTTTGTTTTGTGGGGTGGGG 59.821 55.000 0.00 0.00 0.00 4.96
2100 2253 0.179234 GGTTTGTTTTGTGGGGTGGG 59.821 55.000 0.00 0.00 0.00 4.61
2101 2254 0.179097 CGGTTTGTTTTGTGGGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
2102 2255 0.818296 TCGGTTTGTTTTGTGGGGTG 59.182 50.000 0.00 0.00 0.00 4.61
2103 2256 1.205179 GTTCGGTTTGTTTTGTGGGGT 59.795 47.619 0.00 0.00 0.00 4.95
2104 2257 1.471851 GGTTCGGTTTGTTTTGTGGGG 60.472 52.381 0.00 0.00 0.00 4.96
2105 2258 1.204941 TGGTTCGGTTTGTTTTGTGGG 59.795 47.619 0.00 0.00 0.00 4.61
2106 2259 2.656560 TGGTTCGGTTTGTTTTGTGG 57.343 45.000 0.00 0.00 0.00 4.17
2107 2260 2.926838 CCTTGGTTCGGTTTGTTTTGTG 59.073 45.455 0.00 0.00 0.00 3.33
2108 2261 2.675603 GCCTTGGTTCGGTTTGTTTTGT 60.676 45.455 0.00 0.00 0.00 2.83
2109 2262 1.930503 GCCTTGGTTCGGTTTGTTTTG 59.069 47.619 0.00 0.00 0.00 2.44
2110 2263 1.828595 AGCCTTGGTTCGGTTTGTTTT 59.171 42.857 0.00 0.00 0.00 2.43
2111 2264 1.480789 AGCCTTGGTTCGGTTTGTTT 58.519 45.000 0.00 0.00 0.00 2.83
2112 2265 1.407618 GAAGCCTTGGTTCGGTTTGTT 59.592 47.619 0.00 0.00 30.55 2.83
2113 2266 1.029681 GAAGCCTTGGTTCGGTTTGT 58.970 50.000 0.00 0.00 30.55 2.83
2114 2267 0.313987 GGAAGCCTTGGTTCGGTTTG 59.686 55.000 0.52 0.00 40.44 2.93
2115 2268 1.170290 CGGAAGCCTTGGTTCGGTTT 61.170 55.000 5.69 0.00 40.44 3.27
2116 2269 1.599797 CGGAAGCCTTGGTTCGGTT 60.600 57.895 5.69 0.00 40.44 4.44
2117 2270 2.032071 CGGAAGCCTTGGTTCGGT 59.968 61.111 5.69 0.00 40.44 4.69
2135 2288 4.641645 TTGTGTGGGCGGCTCTGG 62.642 66.667 9.56 0.00 0.00 3.86
2136 2289 3.052082 CTTGTGTGGGCGGCTCTG 61.052 66.667 9.56 0.00 0.00 3.35
2154 2307 2.320745 ATTAGGTAAAACCGGCGGAG 57.679 50.000 35.78 7.40 44.90 4.63
2155 2308 2.785540 AATTAGGTAAAACCGGCGGA 57.214 45.000 35.78 7.03 44.90 5.54
2156 2309 3.853831 AAAATTAGGTAAAACCGGCGG 57.146 42.857 27.06 27.06 44.90 6.13
2157 2310 5.550232 AGTAAAATTAGGTAAAACCGGCG 57.450 39.130 0.00 0.00 44.90 6.46
2158 2311 9.292846 CAATTAGTAAAATTAGGTAAAACCGGC 57.707 33.333 0.00 0.00 44.90 6.13
2184 2337 7.367285 TGTAAAACTAGACAAATGCATGGAAC 58.633 34.615 0.00 0.00 0.00 3.62
2185 2338 7.517614 TGTAAAACTAGACAAATGCATGGAA 57.482 32.000 0.00 0.00 0.00 3.53
2186 2339 7.517614 TTGTAAAACTAGACAAATGCATGGA 57.482 32.000 0.00 0.00 32.74 3.41
2187 2340 6.308766 GCTTGTAAAACTAGACAAATGCATGG 59.691 38.462 0.00 0.00 35.24 3.66
2188 2341 6.032775 CGCTTGTAAAACTAGACAAATGCATG 59.967 38.462 0.00 0.00 35.24 4.06
2189 2342 6.072728 TCGCTTGTAAAACTAGACAAATGCAT 60.073 34.615 0.00 0.00 35.24 3.96
2190 2343 5.237561 TCGCTTGTAAAACTAGACAAATGCA 59.762 36.000 0.00 0.00 35.24 3.96
2191 2344 5.564127 GTCGCTTGTAAAACTAGACAAATGC 59.436 40.000 0.00 0.00 35.24 3.56
2192 2345 6.077838 GGTCGCTTGTAAAACTAGACAAATG 58.922 40.000 0.00 0.00 35.24 2.32
2193 2346 5.107220 CGGTCGCTTGTAAAACTAGACAAAT 60.107 40.000 0.00 0.00 35.24 2.32
2194 2347 4.209703 CGGTCGCTTGTAAAACTAGACAAA 59.790 41.667 0.00 0.00 35.24 2.83
2195 2348 3.737266 CGGTCGCTTGTAAAACTAGACAA 59.263 43.478 0.00 0.00 34.49 3.18
2196 2349 3.243501 ACGGTCGCTTGTAAAACTAGACA 60.244 43.478 0.00 0.00 0.00 3.41
2197 2350 3.120782 CACGGTCGCTTGTAAAACTAGAC 59.879 47.826 0.00 0.00 0.00 2.59
2198 2351 3.311106 CACGGTCGCTTGTAAAACTAGA 58.689 45.455 0.00 0.00 0.00 2.43
2199 2352 2.410730 CCACGGTCGCTTGTAAAACTAG 59.589 50.000 0.00 0.00 0.00 2.57
2200 2353 2.035704 TCCACGGTCGCTTGTAAAACTA 59.964 45.455 0.00 0.00 0.00 2.24
2201 2354 1.202557 TCCACGGTCGCTTGTAAAACT 60.203 47.619 0.00 0.00 0.00 2.66
2202 2355 1.219646 TCCACGGTCGCTTGTAAAAC 58.780 50.000 0.00 0.00 0.00 2.43
2203 2356 1.950828 TTCCACGGTCGCTTGTAAAA 58.049 45.000 0.00 0.00 0.00 1.52
2204 2357 2.172851 ATTCCACGGTCGCTTGTAAA 57.827 45.000 0.00 0.00 0.00 2.01
2205 2358 3.316071 TTATTCCACGGTCGCTTGTAA 57.684 42.857 0.00 0.00 0.00 2.41
2206 2359 3.119065 TCATTATTCCACGGTCGCTTGTA 60.119 43.478 0.00 0.00 0.00 2.41
2207 2360 2.006888 CATTATTCCACGGTCGCTTGT 58.993 47.619 0.00 0.00 0.00 3.16
2208 2361 2.030457 GTCATTATTCCACGGTCGCTTG 59.970 50.000 0.00 0.00 0.00 4.01
2209 2362 2.277084 GTCATTATTCCACGGTCGCTT 58.723 47.619 0.00 0.00 0.00 4.68
2210 2363 1.206132 TGTCATTATTCCACGGTCGCT 59.794 47.619 0.00 0.00 0.00 4.93
2211 2364 1.647346 TGTCATTATTCCACGGTCGC 58.353 50.000 0.00 0.00 0.00 5.19
2212 2365 2.997303 TGTTGTCATTATTCCACGGTCG 59.003 45.455 0.00 0.00 0.00 4.79
2213 2366 4.201910 CCATGTTGTCATTATTCCACGGTC 60.202 45.833 0.00 0.00 31.15 4.79
2214 2367 3.694072 CCATGTTGTCATTATTCCACGGT 59.306 43.478 0.00 0.00 31.15 4.83
2215 2368 3.489059 GCCATGTTGTCATTATTCCACGG 60.489 47.826 0.00 0.00 31.15 4.94
2216 2369 3.128415 TGCCATGTTGTCATTATTCCACG 59.872 43.478 0.00 0.00 31.15 4.94
2217 2370 4.158394 ACTGCCATGTTGTCATTATTCCAC 59.842 41.667 0.00 0.00 31.15 4.02
2218 2371 4.343231 ACTGCCATGTTGTCATTATTCCA 58.657 39.130 0.00 0.00 31.15 3.53
2219 2372 4.989279 ACTGCCATGTTGTCATTATTCC 57.011 40.909 0.00 0.00 31.15 3.01
2220 2373 6.473455 GCTTAACTGCCATGTTGTCATTATTC 59.527 38.462 0.00 0.00 31.15 1.75
2221 2374 6.071447 TGCTTAACTGCCATGTTGTCATTATT 60.071 34.615 0.00 0.00 31.15 1.40
2222 2375 5.418524 TGCTTAACTGCCATGTTGTCATTAT 59.581 36.000 0.00 0.00 31.15 1.28
2223 2376 4.764308 TGCTTAACTGCCATGTTGTCATTA 59.236 37.500 0.00 0.00 31.15 1.90
2224 2377 3.573538 TGCTTAACTGCCATGTTGTCATT 59.426 39.130 0.00 0.00 31.15 2.57
2225 2378 3.156293 TGCTTAACTGCCATGTTGTCAT 58.844 40.909 0.00 0.00 34.21 3.06
2226 2379 2.580962 TGCTTAACTGCCATGTTGTCA 58.419 42.857 0.00 0.00 0.00 3.58
2227 2380 3.641437 TTGCTTAACTGCCATGTTGTC 57.359 42.857 0.00 0.00 0.00 3.18
2228 2381 3.492482 GGTTTGCTTAACTGCCATGTTGT 60.492 43.478 0.00 0.00 36.93 3.32
2229 2382 3.059166 GGTTTGCTTAACTGCCATGTTG 58.941 45.455 0.00 0.00 36.93 3.33
2230 2383 2.288152 CGGTTTGCTTAACTGCCATGTT 60.288 45.455 0.00 0.00 36.38 2.71
2231 2384 1.269448 CGGTTTGCTTAACTGCCATGT 59.731 47.619 0.00 0.00 36.38 3.21
2232 2385 1.981254 CGGTTTGCTTAACTGCCATG 58.019 50.000 3.00 0.00 36.38 3.66
2237 2390 1.720852 GCATTGCGGTTTGCTTAACTG 59.279 47.619 0.00 6.71 46.63 3.16
2238 2391 1.339610 TGCATTGCGGTTTGCTTAACT 59.660 42.857 3.84 0.00 46.63 2.24
2239 2392 1.777101 TGCATTGCGGTTTGCTTAAC 58.223 45.000 3.84 0.00 46.63 2.01
2240 2393 2.515926 TTGCATTGCGGTTTGCTTAA 57.484 40.000 3.84 0.00 46.63 1.85
2241 2394 2.131183 GTTTGCATTGCGGTTTGCTTA 58.869 42.857 3.84 0.00 46.63 3.09
2242 2395 0.936600 GTTTGCATTGCGGTTTGCTT 59.063 45.000 3.84 0.00 46.63 3.91
2243 2396 0.879839 GGTTTGCATTGCGGTTTGCT 60.880 50.000 3.84 0.00 46.63 3.91
2244 2397 1.569003 GGTTTGCATTGCGGTTTGC 59.431 52.632 3.84 0.00 46.70 3.68
2245 2398 0.531532 TGGGTTTGCATTGCGGTTTG 60.532 50.000 3.84 0.00 0.00 2.93
2246 2399 0.179000 TTGGGTTTGCATTGCGGTTT 59.821 45.000 3.84 0.00 0.00 3.27
2247 2400 0.249826 CTTGGGTTTGCATTGCGGTT 60.250 50.000 3.84 0.00 0.00 4.44
2248 2401 1.367102 CTTGGGTTTGCATTGCGGT 59.633 52.632 3.84 0.00 0.00 5.68
2249 2402 2.028733 GCTTGGGTTTGCATTGCGG 61.029 57.895 3.84 0.00 0.00 5.69
2250 2403 2.374226 CGCTTGGGTTTGCATTGCG 61.374 57.895 3.84 0.00 36.19 4.85
2251 2404 1.006337 TCGCTTGGGTTTGCATTGC 60.006 52.632 0.46 0.46 0.00 3.56
2252 2405 0.388907 CCTCGCTTGGGTTTGCATTG 60.389 55.000 0.00 0.00 0.00 2.82
2253 2406 0.827507 ACCTCGCTTGGGTTTGCATT 60.828 50.000 0.00 0.00 32.46 3.56
2254 2407 0.037590 TACCTCGCTTGGGTTTGCAT 59.962 50.000 0.00 0.00 38.19 3.96
2255 2408 0.179015 TTACCTCGCTTGGGTTTGCA 60.179 50.000 0.00 0.00 38.19 4.08
2256 2409 0.955905 TTTACCTCGCTTGGGTTTGC 59.044 50.000 0.00 0.00 38.19 3.68
2257 2410 3.934457 ATTTTACCTCGCTTGGGTTTG 57.066 42.857 0.00 0.00 38.19 2.93
2258 2411 4.342665 TCAAATTTTACCTCGCTTGGGTTT 59.657 37.500 0.00 0.00 38.19 3.27
2259 2412 3.892588 TCAAATTTTACCTCGCTTGGGTT 59.107 39.130 0.00 0.00 38.19 4.11
2260 2413 3.492337 TCAAATTTTACCTCGCTTGGGT 58.508 40.909 0.00 0.00 40.53 4.51
2261 2414 4.718940 ATCAAATTTTACCTCGCTTGGG 57.281 40.909 0.00 0.00 0.00 4.12
2262 2415 7.254084 GCATAAATCAAATTTTACCTCGCTTGG 60.254 37.037 0.00 0.00 33.82 3.61
2263 2416 7.254084 GGCATAAATCAAATTTTACCTCGCTTG 60.254 37.037 0.00 0.00 33.82 4.01
2264 2417 6.756542 GGCATAAATCAAATTTTACCTCGCTT 59.243 34.615 0.00 0.00 33.82 4.68
2265 2418 6.273071 GGCATAAATCAAATTTTACCTCGCT 58.727 36.000 0.00 0.00 33.82 4.93
2266 2419 5.173131 CGGCATAAATCAAATTTTACCTCGC 59.827 40.000 0.00 0.00 33.82 5.03
2267 2420 6.491394 TCGGCATAAATCAAATTTTACCTCG 58.509 36.000 0.00 0.00 33.82 4.63
2268 2421 8.352942 AGATCGGCATAAATCAAATTTTACCTC 58.647 33.333 0.00 0.00 33.82 3.85
2269 2422 8.137437 CAGATCGGCATAAATCAAATTTTACCT 58.863 33.333 0.00 0.00 33.82 3.08
2270 2423 7.920682 ACAGATCGGCATAAATCAAATTTTACC 59.079 33.333 0.00 0.00 33.82 2.85
2271 2424 8.856490 ACAGATCGGCATAAATCAAATTTTAC 57.144 30.769 0.00 0.00 33.82 2.01
2272 2425 9.299963 CAACAGATCGGCATAAATCAAATTTTA 57.700 29.630 0.00 0.00 33.82 1.52
2273 2426 7.201548 GCAACAGATCGGCATAAATCAAATTTT 60.202 33.333 0.00 0.00 33.82 1.82
2274 2427 6.256321 GCAACAGATCGGCATAAATCAAATTT 59.744 34.615 0.00 0.00 36.29 1.82
2275 2428 5.750067 GCAACAGATCGGCATAAATCAAATT 59.250 36.000 0.00 0.00 0.00 1.82
2276 2429 5.068198 AGCAACAGATCGGCATAAATCAAAT 59.932 36.000 0.00 0.00 0.00 2.32
2277 2430 4.398988 AGCAACAGATCGGCATAAATCAAA 59.601 37.500 0.00 0.00 0.00 2.69
2278 2431 3.947196 AGCAACAGATCGGCATAAATCAA 59.053 39.130 0.00 0.00 0.00 2.57
2279 2432 3.544684 AGCAACAGATCGGCATAAATCA 58.455 40.909 0.00 0.00 0.00 2.57
2280 2433 3.058639 GGAGCAACAGATCGGCATAAATC 60.059 47.826 0.00 0.00 0.00 2.17
2281 2434 2.880890 GGAGCAACAGATCGGCATAAAT 59.119 45.455 0.00 0.00 0.00 1.40
2282 2435 2.288666 GGAGCAACAGATCGGCATAAA 58.711 47.619 0.00 0.00 0.00 1.40
2283 2436 1.806247 CGGAGCAACAGATCGGCATAA 60.806 52.381 0.00 0.00 0.00 1.90
2284 2437 0.249447 CGGAGCAACAGATCGGCATA 60.249 55.000 0.00 0.00 0.00 3.14
2285 2438 1.522355 CGGAGCAACAGATCGGCAT 60.522 57.895 0.00 0.00 0.00 4.40
2286 2439 2.125552 CGGAGCAACAGATCGGCA 60.126 61.111 0.00 0.00 0.00 5.69
2287 2440 1.424493 CTTCGGAGCAACAGATCGGC 61.424 60.000 0.00 0.00 0.00 5.54
2288 2441 0.807667 CCTTCGGAGCAACAGATCGG 60.808 60.000 0.00 0.00 0.00 4.18
2289 2442 1.424493 GCCTTCGGAGCAACAGATCG 61.424 60.000 0.00 0.00 0.00 3.69
2290 2443 0.391661 TGCCTTCGGAGCAACAGATC 60.392 55.000 0.00 0.00 37.28 2.75
2291 2444 0.036732 TTGCCTTCGGAGCAACAGAT 59.963 50.000 0.99 0.00 44.95 2.90
2292 2445 1.449782 TTGCCTTCGGAGCAACAGA 59.550 52.632 0.99 0.00 44.95 3.41
2293 2446 4.063529 TTGCCTTCGGAGCAACAG 57.936 55.556 0.99 0.00 44.95 3.16
2297 2450 2.282180 GGGTTTGCCTTCGGAGCA 60.282 61.111 0.00 0.00 38.81 4.26
2298 2451 2.282180 TGGGTTTGCCTTCGGAGC 60.282 61.111 0.00 0.00 34.45 4.70
2299 2452 1.675641 CCTGGGTTTGCCTTCGGAG 60.676 63.158 0.00 0.00 34.45 4.63
2300 2453 2.434331 CCTGGGTTTGCCTTCGGA 59.566 61.111 0.00 0.00 34.45 4.55
2301 2454 2.115266 ACCTGGGTTTGCCTTCGG 59.885 61.111 0.00 0.00 34.45 4.30
2302 2455 1.228124 TCACCTGGGTTTGCCTTCG 60.228 57.895 0.00 0.00 34.45 3.79
2303 2456 0.895559 CCTCACCTGGGTTTGCCTTC 60.896 60.000 0.00 0.00 34.45 3.46
2304 2457 1.153756 CCTCACCTGGGTTTGCCTT 59.846 57.895 0.00 0.00 34.45 4.35
2305 2458 2.846532 CCTCACCTGGGTTTGCCT 59.153 61.111 0.00 0.00 34.45 4.75
2306 2459 2.991540 GCCTCACCTGGGTTTGCC 60.992 66.667 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.