>input_sequence_83818
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---------------------------ATGTCCAAGGCACGCAACGCCTTAGTTGTCACTGGCTTGGTAATATTTGCTGG
CTCTGGCCTAGCATTTCCCTTCTACTTTGTGTAAGTTTGT---T-TTCTCATCTTTCTAGCACTGGTTGAGAAAGGTAGA
TAAACGTGTTGTGTGCATTGGCTAGCGTTTTTTTGTGTAACCTTTGTCCATTTCTTACATCCCAGGAAATCAAAGAACAG
GCCTATTATCGACTCAACGAAGCCTCTGCCACCGCAGGCTACTTTCCGAGGACCATATGTGAACACTGGATCGCGCGACA
TAGGGCCTGATCACACCGAGTACCCCAAGAAGTGA---------------------------------------------
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>chr7B_1_TraesCS7B01G034500
AGCCGTAGACAGATCGCCTTTGCTTGCCTGCAGCTCCGGTTGCCACAACAGCGGCGCCGCCGGGCCCCTGTTCTAGGCGC
C-GGTTGGAGGAGGTCACTGCAGATGTGGGATTCAGAGAATGCATAGTTCAGTTAGAATGTTGTGTTATCAGTTCCACTC
ATGAAAATGAAATTAGGGGCCTGTGCTCCTTTGGGTTTCTTGAAAAAAGAGGGGAAAAAAAGTTCAGTTAGGATTGTTGA
GATCCAGTT---TTCTTCCGTATGGAAGTTTAGGAACCCGGAGT----------------------------------CT
GAAGAAACGTTT------CTTCAGACTAAGCGAGTTACTTTACTTCTTACAGTTACAAGGCTTCATTTCGAGCGATGGTG
ATAAGCTTTCATGTTGACTGACATCAGTGCGATCT--TTGTAGTTCGTC--------GAAGGGTTCGATCTCTGTTAATT
ATTCATATATGTGATCTGGGGTCTTGGTATATAGTGTTGAAGCTGGCAATTTAGCATCCTGCTTCCTAATACTTGTTACT
GTCCTTCTGCCGATCCATTGTTAGTTAGTACTGCTATGGAGTATCCAAGGGTGCTAGCATGTAACCGTGCTGATTTTTAT
GGTGATAAGATGACCTTTTTCAACTACTCCGTAGTTTGTTTACTCTATTTTGGGGGCCAAGGCAGACGGGCACTCTACTG
ATTTCATTAAGAGAAAGAGTAGCAGGTTCAGTATTTGTCGAAAATTC-TTCTCTTGTTACTTTCTGGGTTTCAGAGTCTG
GTGGACGCATGTCAGCAGGATTCAGTTTAAGTTTGATTCGAGGCGTAAAAGGGCAATTTAAAATCAGATTTCGCTTATTA
TCATTTACTTAACGGAAATGGTGAAAATCTGTTGAGATGCTTGTCGCTG-GT------TACCTTCTGATGGCCTAATGTG
TCCATGCTTTTCTATATCACGTTCGAAGGAAAACAGAGGTTTTGTGGCACTACCTATCCTGAATTAATTCTTCTTC----
-ATCTTGACAGTTTCTAAAACAATCACATGTCCAAGGCACGCAACGCCTTAGTTGTCACTGGCTTGGTAATATTTGCTGG
CTCTGGCCTAGCATTTCCCTTCTACTTTGTGTAAGTTTGT---T-TTCTCATCTTTCTAGCACTGGTTGAGAAAGGTAGA
TAAACGTGTTGTGTGCATTGGCTAGCGTTTTTTTGTGTAACCTTTGTCCATTTCTTACATCCCAGGAAATCAAAGAACAG
GCCTATTATCGACTCAACGAAGCCTCTGCCACCGCAGGCTACTTTCCGAGGACCATATGTGAACACTGGATCGCGCGACA
TAGGGCCTGATCACACCGAGTACCCCAAGAAGTGATATGTATTTTCATCTTGTTTTCTCTTTGTTTTTCAACGGGCATGC
AGAAAGCCAG-------TGAGTGGAAACCTGTAATGTTGATAACCGGCTCGTGATGT-----------------------
-----------------------------------GCTGAACACATGCATCTGTGCGTAGTTCTTCATCAACTGTAAGCG
CTTTTGATCATTTCTTGTGCTCCACTGACTACTCCTTGCAAAGCGCTATGCCGCTGTACCTTT-TTTAGGCAATAATAAG
GAAATAAAATGTCAAAGCTACTCA------------TATTGCTTCGCACATTATAGTTTTGTTTTTAATTTAAACTTTAT
GAGACCAAATTTATAGAAAAATCAATCAACATCTAAAATACAAAATAAACACAGTATGAGAATATATATCCCATAATGGA
TCTGCCAATATTGAATTGGTATTGTGAATGTTGGTTTTTTCATATATACAACTGTTCAAACTTCACAAAAAATTTGGCAT
TATGAAATAAATTTGATTACTAGTCTTACAAAATTAACATCACTAGATCCAAAATATAGGTTTTATCGTCTTCTTCTTTT
CATGTGCAAGGCAAGTGCACTGTCGATTTCATTAAGGTAAGAAAGGCCAAAGCAGAGTGACCTGATTTACACGGAAACTA
AGCCGGAGGCAACACATGATTGATTAAGGGACCACCGTGCAA---CCCACAACCATGTTGACATTAGCCAACTCAAACTT
CACCGCCAACATTGCCCACAACCCGGAGATGTGTGAGTGAGCCCTTCGGAGACGCCCTTTAAGAAGCATCGTCATCGGCA
TTCTTCGACCCCCCCACCCCACAAAACAAACCGAACCAAGGCTTCCGCCAGAGCCGCCCACACAAGCTCCGCCGGTTTTA
CCTAATTTTACTAATTGTTCCATGCATTTGTCTAGTTTTACAAGCGACCGTGGAATAATGACAACATGGCAGTTAAGCAA
ACCGCAATGCAAACCCAAGCGAGGTAAAATTTGATTTATGCCGATCTGTTGCTCCGAAGGCAAACCCAGGTGAGGC
>chr7D_2
-GCCGTATACAGATCGCCTTTGCTTGC-TGCAGCGCCGGCCGCCACAACGGCGCCGCCGCCGGGCCCCTGCTCTAGGCAC
C-GGTTGGAGGAGGTCACTGCAGATGTGGGATTCAGAGATTGCATAGTTCAGTTAGAATGTTGTGTGATCAGTTCCACTC
ATGAAAACGAAATTCGGGGCCTGTGCTCCTTTGGGTTTCTTGAAAAAGA--A--AAAAAAAGTTCAGTTAGAATTGTTGA
GATCCAATT---TTCTTCCCTATGGAAGTTCAGGAACCTGGTGT----------------------------------CT
GAAGAAACGTTT------CTTCAGACTAAGCAAGTTACTTTACTTCTTACAGTTACAAGACTTTGTTTCGAGCGATGGTG
A--AGCTTTCATGTTGACG----TCGGTGCGGTCT--TTGTAGTTCGTTGCAGACTTGCAGGGTTCGATCTCTGTTAATT
ATTCATCTATGCGATCTGGGGTCTGGATGTATAGTGATGAAGCTGGCAATTTAGCACCCTGCTTGCTAATACTTGCTACT
GTCCTTCTGCCGATCTGTTATTAGTTACTACTGTTATGGAGTATCCTAGGATGCTAGCATGTAACCATACTGATCTGTAT
GGTGATAACATAACTTTTTTT-CAAC-----TAGTTTGTTTACTCCATTTTTGGGACAAAGGCAGGCAGGCCCTCTACTG
ATTTCATTAAGAGAAAGAGTAGCAGGTTCAATATTTG-----AATTCTTTCTCTTGTTGCTTTCTGGGTTTCAGAGTCTG
GT-----------AGCAGGATTCAGTTTAAGTTTGATTCAAGGCGTAAAAGCGAAATTTAAAATCAGCTTTTCCTTATTA
TCATTTACTTAACGGAAATGGGGAAAATCTGGTGAGATGCTTGTTGCTAAGT------TACCTTCTAACGGCCTAATGTG
CCAATACTTTTCTATATCACGTTCAAAGAAAAACAGAGGTTTTGTGGCATTACCTATCCTGAATTAATTTCTCTTGTTTT
TATCTTGGCAGTTTCTAAAACAATCACATGTCCAAGGCACGCAACGCCTTAGTTGTCACTGGGTTGGTGATCTTTGCTGG
TACTGGCCTAGCATTTCCCTTCTACTTTGTGTAAGTGAGTTTGT-TTCTCATCTTTCTAACACTGGTTGAGAAACGTAGA
TAGACATGTCGTGTGCATTGGCTGGCATTTCTTTCTGTAACCTTTATCCATTTCTTACC-CCCAGGAAATCAAAGAACAG
GCCTATTATTGATTCAACGAAGCCTCTGCCACCGCAGGCTACTTTCCGAGGACCGTATGTGAACACTGGATCGCGCGACA
TAGGGCCTGATCACACCGAGTACCCCAAGAAGTGATATGTATTTCCATCTTGTTTTCTCTTTGTTTTCAGT-GGGCATGC
AGAAAACCAG-------TGAGTGGAACCCTGTAATGCTGAT---------------------------------------
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>chr7A_54
-----------------------------------------------------GCGCCGGCAGCCCCCTGGTCTAGGCGC
CGGGTTGGAGGAGGTCACTGCAGATGTGGGATTCAGAGAATGTATAGTTCAGTTAGAATGTTGTGTT-----------TC
ATGAAAATGGAATTGGGGGCCTGCGCTCCTTTTCTCGAAAAATG------------AAATAGTTCAGTTAGAATTGTTGA
GATCCATTTAATTTTTTCCCTATGGAAGTTTTAGGAGCCCGGAGCCAGTGCACTGCCACCTCTAACCCGGAGTCCGAACT
GAAGAAACGTTTCTGTTCCTTCAGACTAAGTAAGTTAATT-----------GTTACAAGACTTTGTTTCGAGCGATGGTG
ATAAGCTTTCATGTTTCACGTTGCTGTCAATGCCATCTTGTAGTTTGTC--------AGAGGGTTCGATCTCCGTTAATT
ATTCATCTATGCTATCTGGGGTCTTGGTATATGGCGATGAAGCTGCCAATCTAGCATCCTGCTTGCTAATACTTGTTACT
GGCCTTCTGCCGATCTGTTATTAGTTACTGCTGTTATGG----------------------------TACTGATTTTTAT
GGTCATAAGATAACTTT--TT-CAAC-----TAGTTTGTTTACTCTATTTTTGGGGCGAAGGCAGACTGGCGCTCTACTG
ATTTCATTAAGAGAACGAGTAGCAGGTCCATTATTTATCCAAAATTCTTTCTCTTGTAACTTTCTGGGGTTCAGACTCAT
A----------TCAGCAGGATTCAGTTTAAGTTTAATTCGAGGCGTACAAGTGCAATTTAAAATCAGCTTTTGCTTATTA
TCATTTACTTAATGGAAAAGGGGGAAACCTA-TGAGATGCTTGTTGCTA-GTTAGGAGTACCTTCTGATGGCCTAATGTG
CCAATGCTTTGCTATATCACGTTCAAAGGAAAACAGAGGTTTTGTGGCACGACCTTACCTGAATTAATTCTTCTTCCTTT
-ATCTTGACAGTTTCTAAAACAATCACATGTCTAAGGCACGCAACGCCTTAGTTGTCACTGGCTTGGTGATCTTTGCTGG
TACCGGCCTAGCATTTCCCTTCTACTTTGTGTAAGTGAGTTTGTTTTCTCATCTTTCTAGCACTGGTTG-----------
-----------TGTGCATTGGCTGGCGTCTCTTTGCGTAACCTTTATCCATTTCTTACC-CCCAGGAAATCAAAGAACAG
GCCTATTATCGATTCAACGAAGCCTCTGCCACCGCAGGCTACTTTCCGAGGACCGTATGTGAACACTGGATCGCGCGACA
TAGGGCCTGATCACACCGAGTACCCCAAGAAGTGATATGTATTTCCATCTTGTTTTCTCTTTGTTTTTCAACGGGCATGC
AGAAAACCAGTGAGTTCTGAGTGGAACCCTGTAATGTTGATAACCGGCTCGTGATGTTGGGCAACGCAATTGCTGTGGTA
GATTAGCTTCGGTTTGAGCCTTTGAGGTGTTATGTGCAGAACACATGCATATGAGCGTAGTTCTTCCTGAACTGTAAGCG
CTTTTGATCATTTCTTGTGCTCCAGTGATTATTCCTTGCAAAGCGATGTGCTGCTGTACCTTTTTTTAGGCAATAATAAA
TAAATAAAATGCCGAAGCTACTCACACTCTGTTTCATATTACTTAGCAAATTGC--TTTTGTTTTTAAGTCAAACTTTGT
GAGACCAAATTTATAG-AAAAATATTAAACATGTAAAATACCAACTAAATCAACTATTG---------------------
-------ATATTGATTTGGTATTGTCAATGTCGGTTTTTTCATATATATAACTGATCAAACTTCACAAAAGAA-TGGCAT
TGTGAAATATATTTGATTTCTAGTCTTACCAAATTAATATCACTAGATTTTATCT---------------TTCTTTTTTT
CATGTGCAAGGCAGGTGCACTGTCGATTTCATGAAGATAGGAAAAGCAAAAACAGAATGGCCTGAAACTAGGCTGAAAAC
CATA-----CAACACACGATTGATTAAGGGACCAGAGTGCAAAAGCCCACAACCATGTCGACATCAGCCAACTCAAACTT
CACGGCCAACATTTCCGACAACCCAGAGATGTGTGGGTGAGCTCTTCGGAGACGCC------------------------
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>chr1B_111
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-------------------------------TTCGGAGAATGCATAGTTCAGTTAGAATGTTGTGTTGTCAGTTCCACTC
ATGAAAACGAAATTCGGGGCCTGTGCTCCTTTGGGTTTCCTGAAAAAAGATA--AAAGAAAGTTCGGTTAGGATTGTTGA
GATCCAATT---TTCTTCTGAATGGAAGTTTAGGAACCCGGAGT----------------------------------CT
GAAGAAACGTTG------CTTCAGACTAAGAAAGTTAGTTTGCTTCTTACAGTTACAAGACTTCATTTCGAGCAATGGTG
ATAAGCTTTCATGTTGACCGACATCAGTGCGATCT--TTGTAGTTTGTC--------GCAGGGTTCGATCTCTGTTAATT
ATTCATATATGTGATCTGGGGTCTTGGTATATAGTGTTGAAGCCGGCGATTTAGCATCCTGCTTCCTAATACTTGTTACT
GTCCTTCTGCCGATCCATTGTTAGTTAGTACTGTTATGGAGCATCCGAGGGTGCTAGCCTGTAACCATACTGATTTTTAT
GGTGATAAGATGACCTT--TTTCAAC-----TAGTTTGTTTACTCTGTTTTCAGGACAAAGGCAGCA-GGTGCTCTACTG
ACCTCATTAAGATAAAGGGTAGCAGGTTCAGTATTTGTCGAAAATTCTTTCTCTTGTTAATT------------------
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>SNPs
S------S-------------------S------S----SS--------S--------------------S---------
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--------------S-----------------------------------SSSS--------------------------
------S-------------------------------------------------------------------------
-------------------------------S---------------------------S--------------------
------------------S---------------------------------------S---------------------
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---------------------------------S------------S-------------------S-S-----------
--------------------SSSSSSSSSSS--------------------S-----S---------S---S--------
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--SSSSSSSSS----------------------------------------S---------------S---S--------
---------------------S---------S------------S---S-------------------------------
S-S---------------------S-------------------------------------------------------
--------------------------------------------------------------------S--S--------
SS----------------------------------SS------------------------------------S-----
--S--S---S-------------S------S--------------S------------SS--------------------
------------S-----------------------------------------S-------------------------
--------------------------------------------S-----------------------------------
-----S--------------------S-----------------------------------------------------
-------------------------------------S------------S--S------------S-S-----------
------------------------S---S--S-------------S-S---S---------------------------S
S----------S-S--------------------------S---S---S---SSSS------------S-S-------S-
----------------S----SS-S-S-----S--------S--S----SSS-S---SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS-------S----------S-----S----------------S-----S---------------S-SS------
-S-------S--------S----------S-------S----------SSS-SS-SSSSSSSSSSSSSSS-----S----
-------------S------------------S---S--S----S--S---S----S--S-----SSSSSSSSSS--SSS
SSSSSSSSS-------S-----------------SS----------------------S-----S---------------
---S---------S--S-------S----------S------S-------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_627
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-----------------------------------------------AGGGTGCTAGCATGTAACCG-------------
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>reverse_2177
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----------------CACAACCCGGAGATGTGTGA--------------------------------------------
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