Multiple sequence alignment - TraesCS7B01G000800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G000800 chr7B 100.000 2639 0 0 1 2639 229612 232250 0.000000e+00 4874.0
1 TraesCS7B01G000800 chr7B 89.127 561 57 2 1 561 129055 129611 0.000000e+00 695.0
2 TraesCS7B01G000800 chr7B 87.166 561 68 2 1 561 1154714 1155270 3.710000e-178 634.0
3 TraesCS7B01G000800 chr7B 86.988 561 69 2 1 561 1021081 1021637 1.720000e-176 628.0
4 TraesCS7B01G000800 chr5D 92.011 751 33 8 1 747 562414182 562413455 0.000000e+00 1029.0
5 TraesCS7B01G000800 chr5D 93.955 579 16 7 855 1421 562413182 562412611 0.000000e+00 857.0
6 TraesCS7B01G000800 chr5D 88.948 561 58 2 1 561 562487736 562487180 0.000000e+00 689.0
7 TraesCS7B01G000800 chr5D 88.948 561 58 2 1 561 562530581 562530025 0.000000e+00 689.0
8 TraesCS7B01G000800 chr5D 86.631 561 71 2 1 561 561803627 561803071 3.730000e-173 617.0
9 TraesCS7B01G000800 chr5D 92.763 304 14 4 1417 1719 562412582 562412286 1.450000e-117 433.0
10 TraesCS7B01G000800 chr5D 82.991 341 49 8 1083 1418 562429770 562429434 1.540000e-77 300.0
11 TraesCS7B01G000800 chr5D 82.530 166 17 9 578 732 561802960 561802796 4.580000e-28 135.0
12 TraesCS7B01G000800 chr5D 86.364 88 10 2 2551 2638 297989450 297989365 7.780000e-16 95.3
13 TraesCS7B01G000800 chr5D 90.000 40 4 0 1967 2006 487918357 487918396 5.000000e-03 52.8
14 TraesCS7B01G000800 chr5B 88.851 592 35 12 2072 2639 712871483 712870899 0.000000e+00 699.0
15 TraesCS7B01G000800 chr5B 86.809 561 69 3 1 561 711714995 711714440 2.880000e-174 621.0
16 TraesCS7B01G000800 chr5B 86.799 553 28 15 903 1421 712873973 712873432 2.280000e-160 575.0
17 TraesCS7B01G000800 chr5B 84.354 588 64 10 1 586 712889687 712889126 3.840000e-153 551.0
18 TraesCS7B01G000800 chr5B 90.333 300 15 9 1417 1711 712873403 712873113 5.330000e-102 381.0
19 TraesCS7B01G000800 chr5B 82.530 166 17 9 578 732 711714329 711714165 4.580000e-28 135.0
20 TraesCS7B01G000800 chr4A 90.909 77 6 1 2562 2638 632174837 632174912 4.650000e-18 102.0
21 TraesCS7B01G000800 chr2D 90.909 77 6 1 2562 2638 38626953 38627028 4.650000e-18 102.0
22 TraesCS7B01G000800 chr2D 82.609 115 8 9 748 851 591031673 591031786 1.010000e-14 91.6
23 TraesCS7B01G000800 chr2D 88.000 75 8 1 2564 2638 602654988 602654915 1.300000e-13 87.9
24 TraesCS7B01G000800 chr1B 90.909 77 6 1 2562 2638 623394020 623393945 4.650000e-18 102.0
25 TraesCS7B01G000800 chr1B 89.610 77 7 1 2562 2638 255695572 255695497 2.160000e-16 97.1
26 TraesCS7B01G000800 chr3B 91.781 73 5 1 2564 2636 161088223 161088294 1.670000e-17 100.0
27 TraesCS7B01G000800 chr3A 88.158 76 8 1 2564 2639 116644906 116644832 3.620000e-14 89.8
28 TraesCS7B01G000800 chr3A 89.130 46 3 2 1963 2007 584275677 584275633 3.670000e-04 56.5
29 TraesCS7B01G000800 chr3D 86.667 75 9 1 2564 2638 595682636 595682563 6.050000e-12 82.4
30 TraesCS7B01G000800 chr6B 100.000 30 0 0 1979 2008 626461559 626461588 3.670000e-04 56.5
31 TraesCS7B01G000800 chr4D 100.000 29 0 0 1980 2008 51986291 51986319 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G000800 chr7B 229612 232250 2638 False 4874.000000 4874 100.000000 1 2639 1 chr7B.!!$F2 2638
1 TraesCS7B01G000800 chr7B 129055 129611 556 False 695.000000 695 89.127000 1 561 1 chr7B.!!$F1 560
2 TraesCS7B01G000800 chr7B 1154714 1155270 556 False 634.000000 634 87.166000 1 561 1 chr7B.!!$F4 560
3 TraesCS7B01G000800 chr7B 1021081 1021637 556 False 628.000000 628 86.988000 1 561 1 chr7B.!!$F3 560
4 TraesCS7B01G000800 chr5D 562412286 562414182 1896 True 773.000000 1029 92.909667 1 1719 3 chr5D.!!$R6 1718
5 TraesCS7B01G000800 chr5D 562487180 562487736 556 True 689.000000 689 88.948000 1 561 1 chr5D.!!$R3 560
6 TraesCS7B01G000800 chr5D 562530025 562530581 556 True 689.000000 689 88.948000 1 561 1 chr5D.!!$R4 560
7 TraesCS7B01G000800 chr5D 561802796 561803627 831 True 376.000000 617 84.580500 1 732 2 chr5D.!!$R5 731
8 TraesCS7B01G000800 chr5B 712870899 712873973 3074 True 551.666667 699 88.661000 903 2639 3 chr5B.!!$R3 1736
9 TraesCS7B01G000800 chr5B 712889126 712889687 561 True 551.000000 551 84.354000 1 586 1 chr5B.!!$R1 585
10 TraesCS7B01G000800 chr5B 711714165 711714995 830 True 378.000000 621 84.669500 1 732 2 chr5B.!!$R2 731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 477 0.388294 GAGGTAGTGTGGTATCCGGC 59.612 60.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2031 3793 0.445829 TACAACATTGCGCACATCGG 59.554 50.0 11.12 2.25 38.94 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 3.074538 ACCACCTTTGCTACTTGGATCTT 59.925 43.478 0.00 0.00 0.00 2.40
217 219 5.179368 GTGAAGCATAACAGAAGCACACTTA 59.821 40.000 0.00 0.00 35.82 2.24
292 294 4.009675 GACATCAGGGAGCAACAATGTTA 58.990 43.478 0.00 0.00 0.00 2.41
299 301 4.102524 AGGGAGCAACAATGTTATATCCGA 59.897 41.667 13.65 0.00 0.00 4.55
344 346 3.370103 GGGGATGAAAACACCGTATCTGA 60.370 47.826 0.00 0.00 0.00 3.27
393 395 7.537596 TGAAAACATTGTATCAGGGAACAAT 57.462 32.000 0.00 0.00 44.94 2.71
471 477 0.388294 GAGGTAGTGTGGTATCCGGC 59.612 60.000 0.00 0.00 0.00 6.13
472 478 1.047034 AGGTAGTGTGGTATCCGGCC 61.047 60.000 0.00 0.00 0.00 6.13
473 479 1.066918 GTAGTGTGGTATCCGGCCG 59.933 63.158 21.04 21.04 0.00 6.13
474 480 2.129146 TAGTGTGGTATCCGGCCGG 61.129 63.158 39.13 39.13 0.00 6.13
488 494 1.037030 GGCCGGATTCAAGAATGGCA 61.037 55.000 19.59 0.00 39.98 4.92
527 533 1.621317 TCGTATCTGGGAGCAACAACA 59.379 47.619 0.00 0.00 0.00 3.33
528 534 2.236146 TCGTATCTGGGAGCAACAACAT 59.764 45.455 0.00 0.00 0.00 2.71
529 535 2.609459 CGTATCTGGGAGCAACAACATC 59.391 50.000 0.00 0.00 0.00 3.06
530 536 1.742761 ATCTGGGAGCAACAACATCG 58.257 50.000 0.00 0.00 0.00 3.84
531 537 0.396435 TCTGGGAGCAACAACATCGT 59.604 50.000 0.00 0.00 0.00 3.73
532 538 1.621317 TCTGGGAGCAACAACATCGTA 59.379 47.619 0.00 0.00 0.00 3.43
533 539 1.732259 CTGGGAGCAACAACATCGTAC 59.268 52.381 0.00 0.00 0.00 3.67
534 540 1.084289 GGGAGCAACAACATCGTACC 58.916 55.000 0.00 0.00 0.00 3.34
535 541 1.338769 GGGAGCAACAACATCGTACCT 60.339 52.381 0.00 0.00 0.00 3.08
536 542 1.732259 GGAGCAACAACATCGTACCTG 59.268 52.381 0.00 0.00 0.00 4.00
537 543 1.732259 GAGCAACAACATCGTACCTGG 59.268 52.381 0.00 0.00 0.00 4.45
538 544 0.802494 GCAACAACATCGTACCTGGG 59.198 55.000 0.00 0.00 0.00 4.45
539 545 1.609580 GCAACAACATCGTACCTGGGA 60.610 52.381 0.00 0.00 0.00 4.37
540 546 2.939640 GCAACAACATCGTACCTGGGAT 60.940 50.000 0.00 0.00 0.00 3.85
541 547 2.677836 CAACAACATCGTACCTGGGATG 59.322 50.000 9.14 9.14 44.34 3.51
542 548 2.184533 ACAACATCGTACCTGGGATGA 58.815 47.619 15.52 10.54 42.00 2.92
543 549 2.569853 ACAACATCGTACCTGGGATGAA 59.430 45.455 15.52 0.00 42.00 2.57
544 550 2.936498 CAACATCGTACCTGGGATGAAC 59.064 50.000 15.52 0.00 42.00 3.18
545 551 1.485066 ACATCGTACCTGGGATGAACC 59.515 52.381 15.52 0.00 42.00 3.62
546 552 1.484653 CATCGTACCTGGGATGAACCA 59.515 52.381 4.61 0.00 42.00 3.67
547 553 1.874129 TCGTACCTGGGATGAACCAT 58.126 50.000 0.00 0.00 40.36 3.55
614 736 9.929180 GATATGATGTTGAGCCTTTGTAGTATA 57.071 33.333 0.00 0.00 0.00 1.47
657 780 5.106791 GGCCATGAGATGATGTTCGATAAAG 60.107 44.000 0.00 0.00 0.00 1.85
661 791 8.867935 CCATGAGATGATGTTCGATAAAGATAC 58.132 37.037 0.00 0.00 0.00 2.24
778 909 1.002857 AAAAGGAGGATGACCCCCTG 58.997 55.000 0.00 0.00 36.23 4.45
779 910 1.575447 AAAGGAGGATGACCCCCTGC 61.575 60.000 0.00 0.00 41.76 4.85
780 911 2.692368 GGAGGATGACCCCCTGCA 60.692 66.667 0.00 0.00 41.19 4.41
782 913 1.453669 GAGGATGACCCCCTGCATC 59.546 63.158 0.00 0.00 40.05 3.91
784 915 1.150081 GGATGACCCCCTGCATCTG 59.850 63.158 0.00 0.00 40.49 2.90
786 917 0.548031 GATGACCCCCTGCATCTGAA 59.452 55.000 0.00 0.00 38.25 3.02
816 1066 9.562408 TGCATGCATCCATTTTATTGATTATTT 57.438 25.926 18.46 0.00 0.00 1.40
887 1185 7.437862 TGAGGTTTGCTTTTATACTTTGCTTTG 59.562 33.333 0.00 0.00 0.00 2.77
898 1196 8.537728 TTATACTTTGCTTTGATCCATCCATT 57.462 30.769 0.00 0.00 0.00 3.16
899 1197 9.639563 TTATACTTTGCTTTGATCCATCCATTA 57.360 29.630 0.00 0.00 0.00 1.90
900 1198 6.461110 ACTTTGCTTTGATCCATCCATTAG 57.539 37.500 0.00 0.00 0.00 1.73
901 1199 6.189859 ACTTTGCTTTGATCCATCCATTAGA 58.810 36.000 0.00 0.00 0.00 2.10
910 1208 6.962182 TGATCCATCCATTAGATATTCCACC 58.038 40.000 0.00 0.00 32.37 4.61
971 1272 6.214399 CAAACCGGTAGATAGATCCAAGTAC 58.786 44.000 8.00 0.00 0.00 2.73
972 1273 5.057843 ACCGGTAGATAGATCCAAGTACA 57.942 43.478 4.49 0.00 0.00 2.90
1353 1692 3.305773 CGCTTCTACGACGCGCTC 61.306 66.667 5.73 1.80 42.61 5.03
1449 1821 2.922503 TGGCACTCCTTCTCCGCA 60.923 61.111 0.00 0.00 0.00 5.69
1496 1868 1.377366 CGCCTGGAGCTCGTCTTCTA 61.377 60.000 7.83 0.00 40.39 2.10
1517 1889 1.444553 GCGTCCGGTTCAGAGTCAG 60.445 63.158 0.00 0.00 0.00 3.51
1525 1897 0.598680 GTTCAGAGTCAGCAGCGTGT 60.599 55.000 0.00 0.00 0.00 4.49
1526 1898 0.104855 TTCAGAGTCAGCAGCGTGTT 59.895 50.000 0.00 0.00 0.00 3.32
1527 1899 0.319040 TCAGAGTCAGCAGCGTGTTC 60.319 55.000 0.00 0.00 0.00 3.18
1528 1900 0.319383 CAGAGTCAGCAGCGTGTTCT 60.319 55.000 0.00 0.00 0.00 3.01
1529 1901 1.068264 CAGAGTCAGCAGCGTGTTCTA 60.068 52.381 0.00 0.00 0.00 2.10
1539 1911 1.272769 AGCGTGTTCTACTTCCACTCC 59.727 52.381 0.00 0.00 0.00 3.85
1578 1950 2.356313 AAGTGCGACCTGCTCGTG 60.356 61.111 0.00 0.00 44.92 4.35
1600 1972 4.680237 CCGACGGCAACCTGCTCA 62.680 66.667 0.00 0.00 44.28 4.26
1657 2032 7.335422 ACTTGTGAATTCTCATGACTCATTACC 59.665 37.037 22.78 0.00 33.05 2.85
1658 2033 6.950842 TGTGAATTCTCATGACTCATTACCT 58.049 36.000 7.05 0.00 33.05 3.08
1659 2034 8.078060 TGTGAATTCTCATGACTCATTACCTA 57.922 34.615 7.05 0.00 33.05 3.08
1660 2035 7.981789 TGTGAATTCTCATGACTCATTACCTAC 59.018 37.037 7.05 0.00 33.05 3.18
1661 2036 8.200792 GTGAATTCTCATGACTCATTACCTACT 58.799 37.037 7.05 0.00 33.05 2.57
1662 2037 8.762645 TGAATTCTCATGACTCATTACCTACTT 58.237 33.333 7.05 0.00 0.00 2.24
1719 2099 7.308830 GGAGCTCGATCCATTTTTATTTGCTAT 60.309 37.037 7.83 0.00 39.34 2.97
1720 2100 8.621532 AGCTCGATCCATTTTTATTTGCTATA 57.378 30.769 0.00 0.00 0.00 1.31
1721 2101 8.507249 AGCTCGATCCATTTTTATTTGCTATAC 58.493 33.333 0.00 0.00 0.00 1.47
1722 2102 8.289618 GCTCGATCCATTTTTATTTGCTATACA 58.710 33.333 0.00 0.00 0.00 2.29
1739 2119 9.487442 TTGCTATACATATACATCATAGGACCA 57.513 33.333 0.00 0.00 0.00 4.02
1740 2120 9.487442 TGCTATACATATACATCATAGGACCAA 57.513 33.333 0.00 0.00 0.00 3.67
1741 2121 9.751542 GCTATACATATACATCATAGGACCAAC 57.248 37.037 0.00 0.00 0.00 3.77
1742 2122 9.952188 CTATACATATACATCATAGGACCAACG 57.048 37.037 0.00 0.00 0.00 4.10
1743 2123 6.911250 ACATATACATCATAGGACCAACGA 57.089 37.500 0.00 0.00 0.00 3.85
1744 2124 7.297936 ACATATACATCATAGGACCAACGAA 57.702 36.000 0.00 0.00 0.00 3.85
1745 2125 7.732025 ACATATACATCATAGGACCAACGAAA 58.268 34.615 0.00 0.00 0.00 3.46
1746 2126 8.208224 ACATATACATCATAGGACCAACGAAAA 58.792 33.333 0.00 0.00 0.00 2.29
1747 2127 8.712363 CATATACATCATAGGACCAACGAAAAG 58.288 37.037 0.00 0.00 0.00 2.27
1748 2128 3.689649 ACATCATAGGACCAACGAAAAGC 59.310 43.478 0.00 0.00 0.00 3.51
1749 2129 3.410631 TCATAGGACCAACGAAAAGCA 57.589 42.857 0.00 0.00 0.00 3.91
1750 2130 3.745799 TCATAGGACCAACGAAAAGCAA 58.254 40.909 0.00 0.00 0.00 3.91
1751 2131 4.138290 TCATAGGACCAACGAAAAGCAAA 58.862 39.130 0.00 0.00 0.00 3.68
1752 2132 4.764823 TCATAGGACCAACGAAAAGCAAAT 59.235 37.500 0.00 0.00 0.00 2.32
1753 2133 5.242838 TCATAGGACCAACGAAAAGCAAATT 59.757 36.000 0.00 0.00 0.00 1.82
1754 2134 6.431543 TCATAGGACCAACGAAAAGCAAATTA 59.568 34.615 0.00 0.00 0.00 1.40
1755 2135 5.523438 AGGACCAACGAAAAGCAAATTAA 57.477 34.783 0.00 0.00 0.00 1.40
1756 2136 6.096673 AGGACCAACGAAAAGCAAATTAAT 57.903 33.333 0.00 0.00 0.00 1.40
1757 2137 6.521162 AGGACCAACGAAAAGCAAATTAATT 58.479 32.000 0.00 0.00 0.00 1.40
1758 2138 6.645003 AGGACCAACGAAAAGCAAATTAATTC 59.355 34.615 0.10 0.00 0.00 2.17
1769 2149 4.035017 GCAAATTAATTCGTCCGACCATG 58.965 43.478 0.10 0.00 0.00 3.66
1772 2152 6.494842 CAAATTAATTCGTCCGACCATGATT 58.505 36.000 0.10 0.00 0.00 2.57
1775 2155 7.979444 ATTAATTCGTCCGACCATGATTTAT 57.021 32.000 0.00 0.00 0.00 1.40
1779 2159 3.874543 TCGTCCGACCATGATTTATTTGG 59.125 43.478 0.00 0.00 36.56 3.28
1799 2179 2.029623 GTCTTCCTTCCATGCATGCAT 58.970 47.619 27.46 27.46 37.08 3.96
1834 2214 3.367932 ACTTGTATGATGCTGTTCGTTCG 59.632 43.478 0.00 0.00 0.00 3.95
1835 2215 2.267426 TGTATGATGCTGTTCGTTCGG 58.733 47.619 0.00 0.00 0.00 4.30
1836 2216 1.593006 GTATGATGCTGTTCGTTCGGG 59.407 52.381 0.00 0.00 0.00 5.14
1837 2217 0.249120 ATGATGCTGTTCGTTCGGGA 59.751 50.000 0.00 0.00 0.00 5.14
1838 2218 0.034198 TGATGCTGTTCGTTCGGGAA 59.966 50.000 0.00 0.00 0.00 3.97
1839 2219 1.153353 GATGCTGTTCGTTCGGGAAA 58.847 50.000 0.00 0.00 0.00 3.13
1840 2220 1.128692 GATGCTGTTCGTTCGGGAAAG 59.871 52.381 0.00 0.00 0.00 2.62
1841 2221 0.105224 TGCTGTTCGTTCGGGAAAGA 59.895 50.000 0.00 0.00 0.00 2.52
1842 2222 1.270625 TGCTGTTCGTTCGGGAAAGAT 60.271 47.619 0.00 0.00 0.00 2.40
1843 2223 2.028839 TGCTGTTCGTTCGGGAAAGATA 60.029 45.455 0.00 0.00 0.00 1.98
1844 2224 2.347755 GCTGTTCGTTCGGGAAAGATAC 59.652 50.000 0.00 1.88 0.00 2.24
1845 2225 3.581755 CTGTTCGTTCGGGAAAGATACA 58.418 45.455 0.00 5.48 0.00 2.29
1846 2226 3.991773 CTGTTCGTTCGGGAAAGATACAA 59.008 43.478 0.00 0.00 0.00 2.41
1847 2227 3.991773 TGTTCGTTCGGGAAAGATACAAG 59.008 43.478 0.00 0.00 0.00 3.16
1848 2228 3.241067 TCGTTCGGGAAAGATACAAGG 57.759 47.619 0.00 0.00 0.00 3.61
1849 2229 2.564062 TCGTTCGGGAAAGATACAAGGT 59.436 45.455 0.00 0.00 0.00 3.50
1850 2230 2.671396 CGTTCGGGAAAGATACAAGGTG 59.329 50.000 0.00 0.00 0.00 4.00
1851 2231 3.671716 GTTCGGGAAAGATACAAGGTGT 58.328 45.455 0.00 0.00 0.00 4.16
1852 2232 4.070009 GTTCGGGAAAGATACAAGGTGTT 58.930 43.478 0.00 0.00 0.00 3.32
1853 2233 4.360951 TCGGGAAAGATACAAGGTGTTT 57.639 40.909 0.00 0.00 0.00 2.83
1854 2234 4.721132 TCGGGAAAGATACAAGGTGTTTT 58.279 39.130 0.00 0.00 0.00 2.43
1855 2235 5.134661 TCGGGAAAGATACAAGGTGTTTTT 58.865 37.500 0.00 0.00 0.00 1.94
1856 2236 5.239963 TCGGGAAAGATACAAGGTGTTTTTC 59.760 40.000 0.00 0.00 0.00 2.29
1919 2299 8.574196 AAAAGGATCAATGTTTTTACTTCGTG 57.426 30.769 0.00 0.00 0.00 4.35
1930 2310 3.955771 TTACTTCGTGCACCAACTTTC 57.044 42.857 12.15 0.00 0.00 2.62
1933 2313 2.158871 ACTTCGTGCACCAACTTTCCTA 60.159 45.455 12.15 0.00 0.00 2.94
2030 3792 3.550436 GGCTGGTGAGACTAATAGTACGC 60.550 52.174 0.00 0.00 0.00 4.42
2031 3793 3.550436 GCTGGTGAGACTAATAGTACGCC 60.550 52.174 16.92 16.92 36.49 5.68
2032 3794 2.954318 TGGTGAGACTAATAGTACGCCC 59.046 50.000 19.29 8.59 35.72 6.13
2033 3795 2.031333 GGTGAGACTAATAGTACGCCCG 60.031 54.545 14.43 0.00 32.77 6.13
2034 3796 2.874701 GTGAGACTAATAGTACGCCCGA 59.125 50.000 0.00 0.00 0.00 5.14
2035 3797 3.501445 GTGAGACTAATAGTACGCCCGAT 59.499 47.826 0.00 0.00 0.00 4.18
2037 3799 3.484407 AGACTAATAGTACGCCCGATGT 58.516 45.455 0.00 0.00 0.00 3.06
2038 3800 3.252701 AGACTAATAGTACGCCCGATGTG 59.747 47.826 0.00 0.00 0.00 3.21
2039 3801 2.288030 ACTAATAGTACGCCCGATGTGC 60.288 50.000 0.00 0.00 0.00 4.57
2045 3807 4.892379 CGCCCGATGTGCGCAATG 62.892 66.667 14.00 1.42 46.01 2.82
2046 3808 3.814268 GCCCGATGTGCGCAATGT 61.814 61.111 14.00 0.00 39.11 2.71
2048 3810 1.514657 CCCGATGTGCGCAATGTTG 60.515 57.895 14.00 4.83 39.11 3.33
2049 3811 1.209898 CCGATGTGCGCAATGTTGT 59.790 52.632 14.00 0.00 39.11 3.32
2050 3812 0.445829 CCGATGTGCGCAATGTTGTA 59.554 50.000 14.00 0.00 39.11 2.41
2051 3813 1.135831 CCGATGTGCGCAATGTTGTAA 60.136 47.619 14.00 0.00 39.11 2.41
2052 3814 2.477694 CCGATGTGCGCAATGTTGTAAT 60.478 45.455 14.00 0.00 39.11 1.89
2053 3815 3.242576 CCGATGTGCGCAATGTTGTAATA 60.243 43.478 14.00 0.00 39.11 0.98
2054 3816 4.526625 CGATGTGCGCAATGTTGTAATAT 58.473 39.130 14.00 0.00 0.00 1.28
2055 3817 4.608470 CGATGTGCGCAATGTTGTAATATC 59.392 41.667 14.00 0.00 0.00 1.63
2056 3818 4.285807 TGTGCGCAATGTTGTAATATCC 57.714 40.909 14.00 0.00 0.00 2.59
2057 3819 3.944650 TGTGCGCAATGTTGTAATATCCT 59.055 39.130 14.00 0.00 0.00 3.24
2058 3820 5.119694 TGTGCGCAATGTTGTAATATCCTA 58.880 37.500 14.00 0.00 0.00 2.94
2059 3821 5.007234 TGTGCGCAATGTTGTAATATCCTAC 59.993 40.000 14.00 0.00 0.00 3.18
2060 3822 5.236478 GTGCGCAATGTTGTAATATCCTACT 59.764 40.000 14.00 0.00 0.00 2.57
2061 3823 5.465390 TGCGCAATGTTGTAATATCCTACTC 59.535 40.000 8.16 0.00 0.00 2.59
2062 3824 5.465390 GCGCAATGTTGTAATATCCTACTCA 59.535 40.000 0.30 0.00 0.00 3.41
2063 3825 6.346919 GCGCAATGTTGTAATATCCTACTCAG 60.347 42.308 0.30 0.00 0.00 3.35
2064 3826 6.701841 CGCAATGTTGTAATATCCTACTCAGT 59.298 38.462 0.00 0.00 0.00 3.41
2065 3827 7.865889 CGCAATGTTGTAATATCCTACTCAGTA 59.134 37.037 0.00 0.00 0.00 2.74
2066 3828 8.979574 GCAATGTTGTAATATCCTACTCAGTAC 58.020 37.037 0.00 0.00 0.00 2.73
2072 3834 9.925545 TTGTAATATCCTACTCAGTACTTACCA 57.074 33.333 0.00 0.00 0.00 3.25
2114 3876 6.823689 TGTTTCAGAAATAGCTAGGTCCATTC 59.176 38.462 0.00 2.05 0.00 2.67
2126 3888 5.163713 GCTAGGTCCATTCACTTGATTTGTC 60.164 44.000 0.00 0.00 0.00 3.18
2182 3944 1.694150 CTTCTCAGACAGTTCCACCCA 59.306 52.381 0.00 0.00 0.00 4.51
2185 3947 2.104792 TCTCAGACAGTTCCACCCAAAG 59.895 50.000 0.00 0.00 0.00 2.77
2200 3962 4.832823 CACCCAAAGGGAACAACTCTTTAT 59.167 41.667 9.50 0.00 46.25 1.40
2253 4015 2.694109 GGCTTGATAGAGAACTACCGGT 59.306 50.000 13.98 13.98 0.00 5.28
2263 4025 5.323581 AGAGAACTACCGGTAGAGTTTTCT 58.676 41.667 41.26 35.21 40.45 2.52
2294 4056 5.428131 AGATCCCTAGCAAAAGAACTCATCT 59.572 40.000 0.00 0.00 41.32 2.90
2295 4057 5.091261 TCCCTAGCAAAAGAACTCATCTC 57.909 43.478 0.00 0.00 37.42 2.75
2377 4140 9.677567 CATAATTACATATGGTTTTCCCTTTCG 57.322 33.333 7.80 0.00 39.73 3.46
2386 4149 2.072366 TTCCCTTTCGGAAGACCCC 58.928 57.895 4.56 0.00 46.27 4.95
2387 4150 1.833787 TTCCCTTTCGGAAGACCCCG 61.834 60.000 4.56 0.00 46.27 5.73
2417 4182 9.998106 GAAATACATAAGCTAAGAAGGATACCA 57.002 33.333 0.00 0.00 37.17 3.25
2480 4247 7.244192 GCTATTCTAAAAAGTGGTGCTAGTTG 58.756 38.462 0.00 0.00 0.00 3.16
2498 4265 7.768120 TGCTAGTTGTACTACTACTAAGGAGAC 59.232 40.741 12.37 2.40 36.35 3.36
2509 4276 5.955355 ACTACTAAGGAGACTGAGAATGCTT 59.045 40.000 0.00 0.00 42.17 3.91
2560 4344 6.220726 TGGGAGCCTTCTTTATTTTATTGC 57.779 37.500 0.00 0.00 0.00 3.56
2577 4361 2.851263 TGCAGTACTCCATCCGTTTT 57.149 45.000 0.00 0.00 0.00 2.43
2592 4376 7.337184 TCCATCCGTTTTAAAATGTAGTGCATA 59.663 33.333 16.89 2.08 36.67 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 6.415280 CGTCGTCAACCAATAAATTGTTTGAA 59.585 34.615 14.74 1.61 46.08 2.69
104 106 1.604693 CCAAACTCTTAGGTGCGTCGT 60.605 52.381 0.00 0.00 0.00 4.34
217 219 2.792599 CTCGCTAAGTCGCCGTCT 59.207 61.111 0.00 0.00 0.00 4.18
292 294 5.344743 ACAGTGTTGTCATTCTCGGATAT 57.655 39.130 0.00 0.00 29.46 1.63
344 346 3.476552 CCATATACGGCATGGTTGTTCT 58.523 45.455 0.00 0.00 38.53 3.01
393 395 1.775385 TGCTCCCAGATACGACATGA 58.225 50.000 0.00 0.00 0.00 3.07
471 477 4.155462 CAGATATGCCATTCTTGAATCCGG 59.845 45.833 0.00 0.00 0.00 5.14
472 478 4.155462 CCAGATATGCCATTCTTGAATCCG 59.845 45.833 0.00 0.00 0.00 4.18
473 479 5.319453 TCCAGATATGCCATTCTTGAATCC 58.681 41.667 0.00 0.00 0.00 3.01
474 480 6.889301 TTCCAGATATGCCATTCTTGAATC 57.111 37.500 0.00 0.00 0.00 2.52
475 481 7.008332 TGATTCCAGATATGCCATTCTTGAAT 58.992 34.615 12.01 12.01 37.17 2.57
488 494 5.296151 ACGACATGGTTGATTCCAGATAT 57.704 39.130 0.00 0.00 41.05 1.63
527 533 1.874129 TGGTTCATCCCAGGTACGAT 58.126 50.000 0.00 0.00 34.77 3.73
528 534 1.874129 ATGGTTCATCCCAGGTACGA 58.126 50.000 0.00 0.00 38.07 3.43
529 535 4.065088 CAATATGGTTCATCCCAGGTACG 58.935 47.826 0.00 0.00 38.07 3.67
530 536 5.048846 ACAATATGGTTCATCCCAGGTAC 57.951 43.478 0.00 0.00 38.07 3.34
531 537 6.792473 AGATACAATATGGTTCATCCCAGGTA 59.208 38.462 0.00 0.00 38.07 3.08
532 538 5.612688 AGATACAATATGGTTCATCCCAGGT 59.387 40.000 0.00 0.00 38.07 4.00
533 539 5.942236 CAGATACAATATGGTTCATCCCAGG 59.058 44.000 0.00 0.00 38.07 4.45
534 540 5.942236 CCAGATACAATATGGTTCATCCCAG 59.058 44.000 0.00 0.00 38.07 4.45
535 541 5.222109 CCCAGATACAATATGGTTCATCCCA 60.222 44.000 0.00 0.00 40.00 4.37
536 542 5.014123 TCCCAGATACAATATGGTTCATCCC 59.986 44.000 0.00 0.00 40.00 3.85
537 543 6.126863 TCCCAGATACAATATGGTTCATCC 57.873 41.667 0.00 0.00 40.00 3.51
538 544 6.998074 TGTTCCCAGATACAATATGGTTCATC 59.002 38.462 0.00 0.00 40.00 2.92
539 545 6.910191 TGTTCCCAGATACAATATGGTTCAT 58.090 36.000 0.00 0.00 40.00 2.57
540 546 6.320434 TGTTCCCAGATACAATATGGTTCA 57.680 37.500 0.00 0.00 40.00 3.18
541 547 6.601613 TGTTGTTCCCAGATACAATATGGTTC 59.398 38.462 0.00 0.00 40.00 3.62
542 548 6.489603 TGTTGTTCCCAGATACAATATGGTT 58.510 36.000 0.00 0.00 40.00 3.67
543 549 6.073447 TGTTGTTCCCAGATACAATATGGT 57.927 37.500 0.33 0.00 40.00 3.55
544 550 7.122650 ACTTTGTTGTTCCCAGATACAATATGG 59.877 37.037 0.00 0.00 41.28 2.74
545 551 8.055279 ACTTTGTTGTTCCCAGATACAATATG 57.945 34.615 0.00 0.00 36.72 1.78
546 552 8.650143 AACTTTGTTGTTCCCAGATACAATAT 57.350 30.769 0.00 0.00 36.72 1.28
547 553 9.747898 ATAACTTTGTTGTTCCCAGATACAATA 57.252 29.630 0.00 0.00 36.72 1.90
657 780 1.588404 CATCTCGTGTGGCAACGTATC 59.412 52.381 17.30 0.00 43.96 2.24
661 791 1.626654 GGACATCTCGTGTGGCAACG 61.627 60.000 13.53 13.53 42.36 4.10
764 895 1.059006 AGATGCAGGGGGTCATCCTC 61.059 60.000 0.00 0.00 39.79 3.71
766 897 1.150081 CAGATGCAGGGGGTCATCC 59.850 63.158 0.00 0.00 39.79 3.51
767 898 0.548031 TTCAGATGCAGGGGGTCATC 59.452 55.000 0.00 0.00 39.38 2.92
770 901 0.620556 TCTTTCAGATGCAGGGGGTC 59.379 55.000 0.00 0.00 0.00 4.46
772 903 1.688772 CATCTTTCAGATGCAGGGGG 58.311 55.000 0.84 0.00 44.69 5.40
789 1039 9.733556 AATAATCAATAAAATGGATGCATGCAT 57.266 25.926 32.66 32.66 40.77 3.96
830 1080 7.769044 AGACGTGGCATATTATTGTTCTACTTT 59.231 33.333 0.00 0.00 0.00 2.66
831 1081 7.224753 CAGACGTGGCATATTATTGTTCTACTT 59.775 37.037 0.00 0.00 0.00 2.24
832 1082 6.701841 CAGACGTGGCATATTATTGTTCTACT 59.298 38.462 0.00 0.00 0.00 2.57
833 1083 6.700081 TCAGACGTGGCATATTATTGTTCTAC 59.300 38.462 0.00 0.00 0.00 2.59
834 1084 6.811954 TCAGACGTGGCATATTATTGTTCTA 58.188 36.000 0.00 0.00 0.00 2.10
836 1086 5.050091 CCTCAGACGTGGCATATTATTGTTC 60.050 44.000 0.00 0.00 0.00 3.18
837 1087 4.816385 CCTCAGACGTGGCATATTATTGTT 59.184 41.667 0.00 0.00 0.00 2.83
838 1088 4.141711 ACCTCAGACGTGGCATATTATTGT 60.142 41.667 0.00 0.00 0.00 2.71
840 1090 4.100963 TCACCTCAGACGTGGCATATTATT 59.899 41.667 0.00 0.00 0.00 1.40
841 1091 3.641436 TCACCTCAGACGTGGCATATTAT 59.359 43.478 0.00 0.00 0.00 1.28
842 1092 3.028130 TCACCTCAGACGTGGCATATTA 58.972 45.455 0.00 0.00 0.00 0.98
843 1093 1.831106 TCACCTCAGACGTGGCATATT 59.169 47.619 0.00 0.00 0.00 1.28
844 1094 1.410517 CTCACCTCAGACGTGGCATAT 59.589 52.381 0.00 0.00 0.00 1.78
845 1095 0.817654 CTCACCTCAGACGTGGCATA 59.182 55.000 0.00 0.00 0.00 3.14
846 1096 1.593787 CTCACCTCAGACGTGGCAT 59.406 57.895 0.00 0.00 0.00 4.40
847 1097 2.574018 CCTCACCTCAGACGTGGCA 61.574 63.158 0.00 0.00 0.00 4.92
849 1099 0.393077 AAACCTCACCTCAGACGTGG 59.607 55.000 0.00 0.00 0.00 4.94
850 1100 1.502231 CAAACCTCACCTCAGACGTG 58.498 55.000 0.00 0.00 0.00 4.49
851 1101 0.249911 GCAAACCTCACCTCAGACGT 60.250 55.000 0.00 0.00 0.00 4.34
852 1102 0.034059 AGCAAACCTCACCTCAGACG 59.966 55.000 0.00 0.00 0.00 4.18
853 1103 2.262423 AAGCAAACCTCACCTCAGAC 57.738 50.000 0.00 0.00 0.00 3.51
887 1185 7.205515 AGGTGGAATATCTAATGGATGGATC 57.794 40.000 0.00 0.00 35.98 3.36
898 1196 4.180377 AGACGTGGAGGTGGAATATCTA 57.820 45.455 0.00 0.00 0.00 1.98
899 1197 3.033659 AGACGTGGAGGTGGAATATCT 57.966 47.619 0.00 0.00 0.00 1.98
900 1198 3.821421 AAGACGTGGAGGTGGAATATC 57.179 47.619 0.00 0.00 0.00 1.63
901 1199 5.687166 TTTAAGACGTGGAGGTGGAATAT 57.313 39.130 0.00 0.00 0.00 1.28
910 1208 8.934507 AGAAGAAGAATATTTAAGACGTGGAG 57.065 34.615 0.00 0.00 0.00 3.86
1179 1500 4.443266 AGCCAGGCGACGAAGAGC 62.443 66.667 5.55 0.00 0.00 4.09
1326 1665 2.058595 GTAGAAGCGGAGGGAGGCA 61.059 63.158 0.00 0.00 0.00 4.75
1431 1803 2.125350 GCGGAGAAGGAGTGCCAG 60.125 66.667 0.00 0.00 36.29 4.85
1496 1868 2.156051 GACTCTGAACCGGACGCCTT 62.156 60.000 9.46 0.00 0.00 4.35
1517 1889 0.790814 GTGGAAGTAGAACACGCTGC 59.209 55.000 0.00 0.00 0.00 5.25
1525 1897 1.601419 CGCCCGGAGTGGAAGTAGAA 61.601 60.000 0.73 0.00 42.00 2.10
1526 1898 2.050350 CGCCCGGAGTGGAAGTAGA 61.050 63.158 0.73 0.00 42.00 2.59
1527 1899 2.494918 CGCCCGGAGTGGAAGTAG 59.505 66.667 0.73 0.00 42.00 2.57
1663 2038 9.978336 AACAATCTACTCCTACTAGAGTAAGTT 57.022 33.333 0.00 3.85 46.12 2.66
1719 2099 8.411991 TTCGTTGGTCCTATGATGTATATGTA 57.588 34.615 0.00 0.00 0.00 2.29
1720 2100 6.911250 TCGTTGGTCCTATGATGTATATGT 57.089 37.500 0.00 0.00 0.00 2.29
1721 2101 8.601845 TTTTCGTTGGTCCTATGATGTATATG 57.398 34.615 0.00 0.00 0.00 1.78
1722 2102 7.387948 GCTTTTCGTTGGTCCTATGATGTATAT 59.612 37.037 0.00 0.00 0.00 0.86
1723 2103 6.704493 GCTTTTCGTTGGTCCTATGATGTATA 59.296 38.462 0.00 0.00 0.00 1.47
1724 2104 5.527582 GCTTTTCGTTGGTCCTATGATGTAT 59.472 40.000 0.00 0.00 0.00 2.29
1725 2105 4.873827 GCTTTTCGTTGGTCCTATGATGTA 59.126 41.667 0.00 0.00 0.00 2.29
1726 2106 3.689649 GCTTTTCGTTGGTCCTATGATGT 59.310 43.478 0.00 0.00 0.00 3.06
1727 2107 3.689161 TGCTTTTCGTTGGTCCTATGATG 59.311 43.478 0.00 0.00 0.00 3.07
1728 2108 3.950397 TGCTTTTCGTTGGTCCTATGAT 58.050 40.909 0.00 0.00 0.00 2.45
1729 2109 3.410631 TGCTTTTCGTTGGTCCTATGA 57.589 42.857 0.00 0.00 0.00 2.15
1730 2110 4.497473 TTTGCTTTTCGTTGGTCCTATG 57.503 40.909 0.00 0.00 0.00 2.23
1731 2111 5.722021 AATTTGCTTTTCGTTGGTCCTAT 57.278 34.783 0.00 0.00 0.00 2.57
1732 2112 6.636562 TTAATTTGCTTTTCGTTGGTCCTA 57.363 33.333 0.00 0.00 0.00 2.94
1733 2113 5.523438 TTAATTTGCTTTTCGTTGGTCCT 57.477 34.783 0.00 0.00 0.00 3.85
1734 2114 6.399564 CGAATTAATTTGCTTTTCGTTGGTCC 60.400 38.462 1.43 0.00 35.64 4.46
1735 2115 6.513317 CGAATTAATTTGCTTTTCGTTGGTC 58.487 36.000 1.43 0.00 35.64 4.02
1736 2116 6.446659 CGAATTAATTTGCTTTTCGTTGGT 57.553 33.333 1.43 0.00 35.64 3.67
1741 2121 5.002189 GTCGGACGAATTAATTTGCTTTTCG 59.998 40.000 14.33 9.03 43.43 3.46
1742 2122 5.285370 GGTCGGACGAATTAATTTGCTTTTC 59.715 40.000 14.33 5.52 0.00 2.29
1743 2123 5.158494 GGTCGGACGAATTAATTTGCTTTT 58.842 37.500 14.33 0.00 0.00 2.27
1744 2124 4.216687 TGGTCGGACGAATTAATTTGCTTT 59.783 37.500 14.33 0.00 0.00 3.51
1745 2125 3.754323 TGGTCGGACGAATTAATTTGCTT 59.246 39.130 14.33 0.00 0.00 3.91
1746 2126 3.340034 TGGTCGGACGAATTAATTTGCT 58.660 40.909 14.33 3.39 0.00 3.91
1747 2127 3.750639 TGGTCGGACGAATTAATTTGC 57.249 42.857 14.33 7.97 0.00 3.68
1748 2128 5.478233 TCATGGTCGGACGAATTAATTTG 57.522 39.130 13.04 13.04 0.00 2.32
1749 2129 6.693315 AATCATGGTCGGACGAATTAATTT 57.307 33.333 1.43 0.00 0.00 1.82
1750 2130 6.693315 AAATCATGGTCGGACGAATTAATT 57.307 33.333 0.00 0.00 0.00 1.40
1751 2131 7.979444 ATAAATCATGGTCGGACGAATTAAT 57.021 32.000 1.43 0.00 0.00 1.40
1752 2132 7.795482 AATAAATCATGGTCGGACGAATTAA 57.205 32.000 1.43 0.00 0.00 1.40
1753 2133 7.254966 CCAAATAAATCATGGTCGGACGAATTA 60.255 37.037 1.43 0.00 0.00 1.40
1754 2134 6.459573 CCAAATAAATCATGGTCGGACGAATT 60.460 38.462 1.43 0.00 0.00 2.17
1755 2135 5.008613 CCAAATAAATCATGGTCGGACGAAT 59.991 40.000 1.43 0.00 0.00 3.34
1756 2136 4.334203 CCAAATAAATCATGGTCGGACGAA 59.666 41.667 1.43 0.00 0.00 3.85
1757 2137 3.874543 CCAAATAAATCATGGTCGGACGA 59.125 43.478 1.43 0.00 0.00 4.20
1758 2138 3.625764 ACCAAATAAATCATGGTCGGACG 59.374 43.478 1.43 0.00 43.90 4.79
1769 2149 6.127366 TGCATGGAAGGAAGACCAAATAAATC 60.127 38.462 0.00 0.00 39.69 2.17
1772 2152 4.671831 TGCATGGAAGGAAGACCAAATAA 58.328 39.130 0.00 0.00 39.69 1.40
1775 2155 2.673775 TGCATGGAAGGAAGACCAAA 57.326 45.000 0.00 0.00 39.69 3.28
1779 2159 1.466856 TGCATGCATGGAAGGAAGAC 58.533 50.000 27.34 8.37 0.00 3.01
1804 2184 7.452880 AACAGCATCATACAAGTATTTGTGT 57.547 32.000 13.41 4.23 46.63 3.72
1805 2185 6.684131 CGAACAGCATCATACAAGTATTTGTG 59.316 38.462 13.41 0.00 46.63 3.33
1807 2187 6.775088 ACGAACAGCATCATACAAGTATTTG 58.225 36.000 0.00 0.00 40.24 2.32
1808 2188 6.985188 ACGAACAGCATCATACAAGTATTT 57.015 33.333 0.00 0.00 0.00 1.40
1809 2189 6.237835 CGAACGAACAGCATCATACAAGTATT 60.238 38.462 0.00 0.00 0.00 1.89
1810 2190 5.232202 CGAACGAACAGCATCATACAAGTAT 59.768 40.000 0.00 0.00 0.00 2.12
1811 2191 4.561213 CGAACGAACAGCATCATACAAGTA 59.439 41.667 0.00 0.00 0.00 2.24
1812 2192 3.367932 CGAACGAACAGCATCATACAAGT 59.632 43.478 0.00 0.00 0.00 3.16
1813 2193 3.242091 CCGAACGAACAGCATCATACAAG 60.242 47.826 0.00 0.00 0.00 3.16
1814 2194 2.670905 CCGAACGAACAGCATCATACAA 59.329 45.455 0.00 0.00 0.00 2.41
1834 2214 6.650427 AGAAAAACACCTTGTATCTTTCCC 57.350 37.500 0.00 0.00 0.00 3.97
1835 2215 8.942338 AAAAGAAAAACACCTTGTATCTTTCC 57.058 30.769 11.76 0.00 37.14 3.13
1905 2285 3.440872 AGTTGGTGCACGAAGTAAAAACA 59.559 39.130 19.02 0.66 41.61 2.83
1917 2297 4.846779 TGAAATAGGAAAGTTGGTGCAC 57.153 40.909 8.80 8.80 0.00 4.57
1919 2299 5.453567 ACTTGAAATAGGAAAGTTGGTGC 57.546 39.130 0.00 0.00 29.98 5.01
2002 2382 0.970937 TAGTCTCACCAGCCCTTCCG 60.971 60.000 0.00 0.00 0.00 4.30
2008 2388 3.550436 GCGTACTATTAGTCTCACCAGCC 60.550 52.174 0.00 0.00 0.00 4.85
2014 3776 3.198409 TCGGGCGTACTATTAGTCTCA 57.802 47.619 0.00 0.00 0.00 3.27
2015 3777 3.501445 ACATCGGGCGTACTATTAGTCTC 59.499 47.826 0.00 0.00 0.00 3.36
2018 3780 2.288030 GCACATCGGGCGTACTATTAGT 60.288 50.000 1.30 1.30 0.00 2.24
2030 3792 1.514657 CAACATTGCGCACATCGGG 60.515 57.895 11.12 0.00 38.94 5.14
2031 3793 0.445829 TACAACATTGCGCACATCGG 59.554 50.000 11.12 2.25 38.94 4.18
2032 3794 2.239751 TTACAACATTGCGCACATCG 57.760 45.000 11.12 0.42 42.12 3.84
2033 3795 4.911610 GGATATTACAACATTGCGCACATC 59.088 41.667 11.12 0.25 0.00 3.06
2034 3796 4.580167 AGGATATTACAACATTGCGCACAT 59.420 37.500 11.12 4.17 0.00 3.21
2035 3797 3.944650 AGGATATTACAACATTGCGCACA 59.055 39.130 11.12 1.31 0.00 4.57
2037 3799 5.364778 AGTAGGATATTACAACATTGCGCA 58.635 37.500 5.66 5.66 0.00 6.09
2038 3800 5.465390 TGAGTAGGATATTACAACATTGCGC 59.535 40.000 0.00 0.00 0.00 6.09
2039 3801 6.701841 ACTGAGTAGGATATTACAACATTGCG 59.298 38.462 0.00 0.00 0.00 4.85
2040 3802 8.979574 GTACTGAGTAGGATATTACAACATTGC 58.020 37.037 0.00 0.00 0.00 3.56
2046 3808 9.925545 TGGTAAGTACTGAGTAGGATATTACAA 57.074 33.333 0.00 0.00 29.71 2.41
2096 3858 6.349300 TCAAGTGAATGGACCTAGCTATTTC 58.651 40.000 0.00 0.00 0.00 2.17
2107 3869 9.696917 AATTAAAGACAAATCAAGTGAATGGAC 57.303 29.630 3.45 0.00 0.00 4.02
2114 3876 8.819974 AGTTTGCAATTAAAGACAAATCAAGTG 58.180 29.630 0.00 0.00 34.78 3.16
2153 3915 5.298276 GGAACTGTCTGAGAAGACGATAGAT 59.702 44.000 0.00 0.00 41.43 1.98
2154 3916 4.636648 GGAACTGTCTGAGAAGACGATAGA 59.363 45.833 0.00 0.00 41.43 1.98
2176 3938 1.133482 AGAGTTGTTCCCTTTGGGTGG 60.133 52.381 2.25 0.00 44.74 4.61
2182 3944 5.535030 GTGGTCATAAAGAGTTGTTCCCTTT 59.465 40.000 0.00 0.00 34.81 3.11
2185 3947 4.652822 AGTGGTCATAAAGAGTTGTTCCC 58.347 43.478 0.00 0.00 0.00 3.97
2263 4025 7.569111 AGTTCTTTTGCTAGGGATCTTATAGGA 59.431 37.037 0.00 0.00 0.00 2.94
2271 4033 5.679601 AGATGAGTTCTTTTGCTAGGGATC 58.320 41.667 0.00 0.00 0.00 3.36
2334 4096 8.363390 TGTAATTATGTTGTGGAAATGAAGCAA 58.637 29.630 0.00 0.00 0.00 3.91
2377 4140 2.237893 TGTATTTCCTTCGGGGTCTTCC 59.762 50.000 0.00 0.00 36.25 3.46
2380 4143 4.444449 GCTTATGTATTTCCTTCGGGGTCT 60.444 45.833 0.00 0.00 36.25 3.85
2382 4145 3.458487 AGCTTATGTATTTCCTTCGGGGT 59.542 43.478 0.00 0.00 36.25 4.95
2386 4149 7.926555 TCCTTCTTAGCTTATGTATTTCCTTCG 59.073 37.037 0.00 0.00 0.00 3.79
2387 4150 9.785982 ATCCTTCTTAGCTTATGTATTTCCTTC 57.214 33.333 0.00 0.00 0.00 3.46
2417 4182 6.149474 GGCGCTGTAATCACCAAGAATATTAT 59.851 38.462 7.64 0.00 0.00 1.28
2480 4247 9.048446 CATTCTCAGTCTCCTTAGTAGTAGTAC 57.952 40.741 0.00 0.00 0.00 2.73
2498 4265 4.583871 ACCAACCTCTAAAGCATTCTCAG 58.416 43.478 0.00 0.00 0.00 3.35
2560 4344 7.141100 ACATTTTAAAACGGATGGAGTACTG 57.859 36.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.