CLUSTAL X (1.81) multiple sequence alignment input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 GGTGCTTGATTTGTCCAGCAACCAATTGGTGGGCACCATCCCATCGTGGA chr7B_1 GGTGCTTGATTTGTCCGGCAACCAATTGGTGGGCACCATCCCATCGTGGA chr7B_1 GGTGCTTGATTTGTCTCGCAACCAATTGGTCGGCACCATTCCATCGTGGA chr7B_1 GGTGCTTGATTTGTCCCGCAACCAATTGGTCGGCACCATTCCATTGTGGA chr5D_1 GGTGCTTGATTTGTCCGGCAACCAATTGGTGGGCACCATCCCATCGTGGA chr5D_1 GGTGCTTGATTTGTCCGGCAACCAATTGGTGGGCACCATCCCATCGTGGA chr5D_1 GGTGCTTGATTTGTCCGGCAACCAATTGGTGGGCACCATCCCATCGTGGA chr5D_1 GGTGCTTGATTTGTCCCGCAACCAATTTGTCGGCACCATTCCATCGTGGA chr5B_1 GGTGCTTGATTTGTCTGGCAACCATTTAGTGGGCACCATCCCATCGTGGA chr5B_1 GGTGCTTGATTTGTCTCGCAACCAATTGGTCGGCACCAT-CCATCGTGGA chr5B_903 -------------------------------------------------- SNPs ----------------S--------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 TTGGTGAGCTTCACCACCTTTGCTACTTGGATCTTTCAAACAATTT-ATT chr7B_1 TTGGTGAGCTTCACCACCTTTGCTACTTGGATCTCTCAAACAATT-CATT chr7B_1 TTGGTGAGCTGCACCACCTTTCCTACTTGGATCTCTCAAATAATT-CATT chr7B_1 TTGGTCAGCTTCACCACCTTTGCTACTTGGATCTCTCAAACAATT-CATT chr5D_1 TTGGTGAGCTTCACCACCTTTGCTACTTGGATCTCTCAAACAATTTCATT chr5D_1 TTGGTGAGCTTCACCACCTTTGCTACTTGGATCTCTCAAACAATT-CATT chr5D_1 TTGGTGAGCTTCACCACCTTTGCTACTTGGATCTCTCAAACAATT-CATT chr5D_1 TTGGTCAGCTTCACCACCTTTGCTACTTGGATCTCTCAAACAATT-CATT chr5B_1 TTGGTGAGCTTCACCACCTTTGCTACTTGGATCTCTCAAACAATT-CATT chr5B_1 TCGGTGAGCTGCACCACCTTTCCTACTTGGATCTCTCAGATAATT-CATT chr5B_903 -------------------------------------------------- SNPs ----------------------------------S--------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 GGTTGACGACGCACCTAAGAGTTTGGCACCACTAAAGGGGCTCGCCACCG chr7B_1 GGTTGGCGATGCACCTAAGAGTTTGGCACTGCTAAAGGGGCTCGCCCCTG chr7B_1 GGTTGGCGAGGTACCTAAGAGTTTGGCACGACTAAAGGGCCTCGCCACCG chr7B_1 GGTTGGCGAGGTACCTAAGAGTTTGACACTACTAAAGGGCTTCGCCACCG chr5D_1 GGTTGGCGACGCACCTAAGAGTTTGGCACCACTAAAGGGGTTTGCCACCG chr5D_1 GGTTGGCGATGCACCTAAGAGTTTGGCACTGCTAAAGGGGCTCGCCCCTG chr5D_1 GGTTGGCGATGCACCTAAGAGTTTGGCACTGCTAAAGGGGCTCGCCCCTG chr5D_1 GGTTGGTGAGGTACCTAAGAGTTTGACACGACTAAAGGGCTTCGCCACCG chr5B_1 GGTTGGCGATGCACCTAAGAGTTTGGCACTGCTAAAGGGGCTCGCCCCTG chr5B_1 GGTTGGCGAGGTACCTAAGAGTTTGGCACGACTAAAGGGCCTCGCCACCG chr5B_903 -------------------------------------------------- SNPs -----S-------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 GCGGGCGTTCACTGGGCATGGTTTTCACTAACATGCCATCATATGTGAAG chr7B_1 ATGGGCGTTCACCGGGCATGGTTTTCACTAACATTCCATCGTATGTGAAG chr7B_1 CTGGGCATTCAGAGGGCATGACTTTCACTAACATGCCATTGTATGTGAAG chr7B_1 TTGGGCGTTCAGAGGGCATGACTTTCACTAACATGCCATTGTATGTGAAG chr5D_1 GCGGGTGTTCACTGGGCATGGTTTTCAGTAACATGCCATCATATGTGAAG chr5D_1 ATGGGCATTCATCGGGCATGGTTTTCACTAACATTCCATCGTATGTGAAG chr5D_1 ATGGGCATTCATCGGGCATGGTTTTCACTAACATTCCATCGTATGTGAAG chr5D_1 CTAGGCGTCCAGAGGGCATGACTTTCACTAACATGCCATTGTATGTGAAG chr5B_1 ATGGGCGTTCACCGGGCATGGTTTTCACTAACATTCCATCGTATGTGAAG chr5B_1 TTGGGCATTCAGAGGGCATGACTTTCACTAACATGCCATTGTATGTGAAG chr5B_903 -------------------------------------------------- SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 CATAACAGAAGCACACTTAGACGGCGACTTAGCGAGCTCCCAAATGTCAT chr7B_1 CATAACAGAAGCACACTCGGACGACGACTTAACGACCTCCCAAATGTCAT chr7B_1 CATAATAGAAGCACACTGGGACGACGACTTAACGAGCTCCCAAATGTCAT chr7B_1 CATAACAGAAGCACACTCGGACGACGACTTAACGAGCTCCTAAATGTCAT chr5D_1 CATAACAGAAGCACACTTGGACGGCGACTTAGCGAGCTCCCAAATGTCAT chr5D_1 CATAACAGAAGCACACTCGGACGACGACTTAACGAGCTCCCAAATGTCAT chr5D_1 CATAACAGAAGCACACTCGGACGACGACTTAACGAGCTCCCAAATGTCAT chr5D_1 CATAACAGAAGCACACTCGGACGACGACTTAACGAGCTCCCAAATGTCAT chr5B_1 CATAACAGAAGCACACTCGGACGGCGACTTAACGAGCTCCCAAATGTCAT chr5B_1 CATAACAGAAGCACACTCGGACGGCGACTTAATGAGCTCCCAAATGTCAT chr5B_903 -------------------------------------------------- SNPs ------------------S------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 AACAGGGACCAACAACTTTGTGACATCAGGGAGCAACAATGTTATATCCG chr7B_1 CACAGGGACCAACAACTTTGTAACATCTGGGAGCAACAATGTTTTATCGG chr7B_1 AACAGGGACCAACAATGTTGTGAGATCCGGGAGAAAGAATGTTGTATCCG chr7B_1 AACAGGGACCAACAATGTTGTGAGATTCGGGAGAAACAATGTTGTATCCG chr5D_1 AACAGGGACCAATAACTTTGTGACATTAGGGAGCAACAATGTTGTATCCG chr5D_1 CACAGGGACCAACAACTTTGTAACATCGGGGAGCAACAATGTTTTATCCG chr5D_1 CACAGGGACCAACAACTTTGTAACATCGGGGAGCAACAATGTTTTATCCG chr5D_1 AACGGGGACCAACAATGTTGTGAGATTCGGGAGAAACAATGTTGTATCAG chr5B_1 CATAGGGACAAACAACTTTGTAACATCTGGGAGCAAGAATGTTTTATCCG chr5B_1 AACAGGGACCAACAATCTTGTGAGATCCGGGAGAAACAATGTTGTATCCG chr5B_903 -------------------------------------------------- SNPs -------------------------------------------S------ forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 AGAATGACAACACTGTCATATATGGGGATGAAAACACCGTATCTGAGAAC chr7B_1 GGAATGACAACACAGTCATATTTGGGGATGAAAACACCGTATCTGGGAAC chr7B_1 GAAACGACAATACTGTCATATTTGGGGATGAAAACACCGTATCTGGGAAC chr7B_1 GAAACGATAATACTGTCATATTTGGGGATGAAAACACCGTATCTGGGAAC chr5D_1 GGAATGCCAACGATGTCATATATGGGGATGAAAACACCGTATCTGGGAAC chr5D_1 GGAATGACAACACAGTCATATTTGGGGATGAAAACACCGTATCAGGGAAC chr5D_1 GGAATGACAACACAGTCATATTTGGGGATGAAAACACCGTATCAGGGAAC chr5D_1 GAAACGACAATACTGTCATATTTGGGGATGAAAACACCGTATCTGGGAAC chr5B_1 GGAACGACAACACAGTCATATTTGGGGATGAAAACACCATATCCGGGAA- chr5B_1 GAAACGACAATACTGTCATATTTGGGGATGAAAACACCGTATCTGGGAAC chr5B_903 -------------------------------------------------- SNPs S--------------------------------------------S---- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 AACCATGCCGTATATGGGAATGAAAACATTGTATCAGGGAACAATCATGT chr7B_1 AACCATGCTATATATGGGGATGGGAACACGGTATCTGGGAACAACCATGT chr7B_1 AACCATGCGGTATATGGGAATCACAACACCGTATCCGGGAACAACCACGT chr7B_1 AACCATGCGGTATACGGGAATCACAACACCGTATCTGGGAACAACCATGT chr5D_1 AACCATGCCGTATATGGGAATGAAAACATTGTATCAGGGAACAACCATGT chr5D_1 AACCATGCTATATATGGGGATGAGAACACGGTATCTGGGAACAACCATGT chr5D_1 AACCATGCTATATATGGGGATGAAAACACGGTATCTGGGAACAACCATGT chr5D_1 AACCATGCGGTATATGGGAATCACAACACCGTATCTGGGAACAACCACGT chr5B_1 --------------------TGAAAACACCGTATCTGGGAACAACCATGT chr5B_1 AACCATGCGGTGTATGGGAATCACAACACCGTGTCCGGGAACAACCACGT chr5B_903 -------------------------------------------------- SNPs --------------------------------------------S----- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 CGTATCTGGGAGCAAGCATGTGGTATCTGGTAGCAGGCATGGCGTAACTG chr7B_1 CGTATCTGGGAGCAAGCATGTTGTATCCGGGAGTAGGCATGGCGTAACTG chr7B_1 CGTATCTGGGAGCAAGCATGTTGTATCTGGGAGCAGGCATGGTGTAACTG chr7B_1 CGTATCTGGGAGCAAGCATGTTGTATCTGGGAGCAGGCATGGTGTAACCG chr5D_1 GGTATCTGGGAGCAAGCATGTGGTATCTGGTAGCAGGCATGGTGTAACTG chr5D_1 CGTATCTGGGAGTAAGCATGTTGTATCCGGGAGTAGGCATGGCGTAACTG chr5D_1 CGTATCTGGGAGTAAGCATGTTGTATCCGGGAGTAGGCATGGCGTAACTG chr5D_1 CGTATCTGGGAGCAAGCATGTTGTATCTGGGAGCAGGCATGGTGTAACTG chr5B_1 CGTATCTGGGAGTAAGCATGTCGTATCTGGGAGCAGGCATGGCATAACTG chr5B_1 CGTATCTGGGAGCAAGCATGTTGTATCTGGGAGCAGGCATGGTGTAACTG chr5B_903 -------------------------------------------------- SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 GGAGAGGTAGTGTGGTATCC----GGCCGGATTCAAGAATGGCATATCTG chr7B_1 GGAGAAGTAGTGTGGTATCT----GGG----TTCAACAATGGCGTATCTG chr7B_1 GGAGTAGCAGTGTCGTATCT----GGG----TTCAACAATGGCGTATCTG chr7B_1 GGAGTAGCAGTGTCGTATCT----GGG----TTCAACAATGGCGTATCTG chr5D_1 GGAGAGGCAGTGTGGTATCCGGCCGGG----TTCAAGAATGGCGTATCTG chr5D_1 GGAGAAGTAGTGTGGTATCT----GGG----TTCAACAATGGCGTATCTG chr5D_1 GGAGAAGTAGTGTGGTATCT----GGG----TTCAACAATGGCGTATCTG chr5D_1 GGAGTAGCAGTGTCGTATCT----GGG----TTCAACAATGGCGTATCTG chr5B_1 GGAGAAACAGTTTCGTATCC----GGG----AGCTACAATAA-------- chr5B_1 GGAGTAGCAGTGTCGTATCT----GGG----TTCAACAATGGCGTATCTG chr5B_903 -------------------------------------------------- SNPs --------------------------SSSSS------------S------ forward_477 -------GAGGTAGTGTGGTATCCGGC----------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 GAATCAACCATGTCGTATCTGGGAGCAACAACATCGTACCTGGGATGAAC chr7B_1 GGATCAACCATGTTGTATCGGGGAGTAACAAT------------------ chr7B_1 GGATCAACCATGTCGTATCTGGGAGTAACAAT------------------ chr7B_1 GGATCAACCATGTCGTATCTGGGAGTAACAAT------------------ chr5D_1 GAATCAACCATGTCGTATCTGGTAGCAACAAC------------------ chr5D_1 GGATCAACCATGTTGTATCGGGGAGTAACAAT------------------ chr5D_1 GGATCAACCATGTTGTATCGGGGAGTAACAAT------------------ chr5D_1 GGATCAACCATGTCGTATCTGGGAGTAACAAT------------------ chr5B_1 -------------CGTATCTGGGAGTAAAAAT------------------ chr5B_1 GGATCAACCATGTCGTATCTGGGAGTAACAAT------------------ chr5B_903 -------------------------------------------------- SNPs --------------------------------SSSSSSSSSSSSSSSSSS forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 CATATTGTATCTGGGAACAACAAAGTTATATCAGGAGTTGA--------- chr7B_1 ---GTCGTATCCGGGAGCAACAATGTTGTATCTGGGA------------- chr7B_1 ---GTCGTATCTGGGAGCAACAATGTTGTATCTGGGA------------- chr7B_1 ---ATCGTATCTGGGAGCAATAATGTTGTATCTGGGA------------- chr5D_1 ---GTCGTATCTGGGAACAACAAAGTTATATCAGGAGTTGA--------- chr5D_1 ---GTCGTATCCGGGAGCAACAATGTTGTATCTGGGA------------- chr5D_1 ---GTTGTATCCGGGAGCAACAATGTTGTATCTGGGA------------- chr5D_1 ---ATCGTATCTGGGAGCAGCAATGTTGTATCTGGGATGAACCATATCGT chr5B_1 ---GTAGTATTTGGGAGCAACAATTCTGTATCTGGGAGGAACCATATTGT chr5B_1 ---GTCGTATCTGGGAGCAACAATGTTGTATCTGGGATGAACCATATCGT chr5B_903 -------------------------------------------------- SNPs SSS----------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AGTTGGGAATAACAAAGTTGTATCAGGGGCTTAATTTTATATATAATTAA chr5B_1 ATATGGGGACAACAAGGTTATAACAGGAGGTTGA---------------- chr5B_1 AGTTGGGAATAACAAAGTTGTATCAGGAGCTTAATTTTATATATAATTAA chr5B_903 -------------------------------------------------- SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GCCCTTATATATACATATTGCCTCCTCTTGAACTTCTCAACTATCCGAGG chr5B_1 -------------------------------------------------- chr5B_1 GCCCTTATATATACATATTGCCTCCTCTTGAACTTCTCAACTATGTGAGG chr5B_903 -------------------------------------------------- SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------ATGATATGATGTTGAGCCTTTGTAGTATATTTG-CTCCTAGTA chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------ATGATATGATGTTGAGGCTTTGTAGTATTTTTG-CTCCTAGTA chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AGTTGAGATGAGATTATGTTTAGCCTTTGTAGTTTGTTTTTCTGCTACTA chr5B_1 -------------------------------------------------- chr5B_1 AGTTGAGATGAGATTATGTTCAGCCTTTGTAGTTTGTTTTTCTGCTACTA chr5B_903 -------------------------------------------------- SNPs -----------------------------------S-------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 TCCGAGGCCATGAGATGATGTTCGATAAAG-------ATACGTTGCCACA chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 TCTGAGGCCATGAGATGATGTTCGATAAATAAGGTAGAAA------CACA chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TCCTAGGCCATAAGATACTATTCGATAAATAAGGTACATAAGTTGCCACA chr5B_1 -------------------------------------------------- chr5B_1 TCGTAGGCCATGAGATACTATTCGATAAATAAGGTACATAAGTTGCCACA chr5B_903 -------------------------------------------------- SNPs -----------------------------S----------S--------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 CGAGATGT-CCTGCCTATGCCTCGCATATGTTGTAATACTCAGAATCTTT chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 CGAGATGTGCCTGCCTATGCCTCGCATATGTTGTAATACTCAGAATCTTT chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CGAGATGTGCCTGCCTATGCCTCGCATATGTTGTAATAATC-GAATCTTT chr5B_1 -------------------------------------------------- chr5B_1 CGAGATGTGCCTGCCTATGCCTCGCATATGTTGTAATAATC-GAATCTTT chr5B_903 -------------------------------------------------- SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 ATGATCTAGTATATATATATATATGTATTTTTTTTTAAAAAAAGGAGGAT chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 ATGGTCTAGTATATACATGTATTGTACTATGTACCTACGTCCCGTAATAT chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATGGTCCATGTAT------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 ATGGTCCATGTAT------------------------------------- chr5B_903 -------------------------------------------------- SNPs ---S-----------S--S---SSSSS-S-S-SSS--SSSSSS-S-SS-- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 GACCCCCTGCATCTGAA--------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 AAGACGTTTTTTGTAAGCTTGTTTAGCTTGTAAAAATATCTTATATCGTG chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 -------------------------------------------------- SNPs S-SS-SS-SSS-S-S-S--------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 GGATGAAGGAGTAATATGTTATGCCAAGTTGGACGAGTAATTCCAAACGG chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 -------------------------------------------------- SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 ------------------------------------AGATGCATGCATCC chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 AGGGAGTATATGCCAAGTTGTATTGTGTACTACTGGAGGTGAGTGGTTTG chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 -------------------------------------------------- SNPs --------------------------------------S--SS--SS-SS forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 ATTTTATTGATTATTTTCGAAGATCTTATAAAGTAGAACAATAATATGCC chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 TTGTTAATTATTATTATTTGAGCTCTGATCTCTGATCTCTGAGGCGAGGA chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 -------------------------------------------------- SNPs S-S---S-S------S-SSS--S---S--SSSSS-SSS-SSSSSSSS-SS forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 ACG---------------------------------------------TC chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 GGCAATAAGCATATAAATTATTCCTTGCGCCCTCGCGCCTCGGCCTTCTC chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 -------------------------------------------------- SNPs SSS----------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 TGAGGTGAGGTTTGCTT---TTATACTTTGCTTTGATCCATCCATTAGAT chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 TGAGGTGAGGTTTGCTTGCTTTATACTTTGCTTTCATCCATCCATAC--- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 -------------------------------------------------T SNPs ----------------------------------S----------SSSS- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 ATTCCACCTCCACGTCTTAAATATTCTT---CTTCTTCCTCCTCCGGCAA chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 --TCCACGTCCACGTCTTAAATATTCTTCTTCTTCTTCCTCCTCCGGCAA chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 ATACCACGTCCACGTCTTGAATATTCTTCTTCC---TCCTCCTCCGGCAA SNPs -------S------------------------------------------ forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 ACCGGTAGATAGATCCAAGTACATTAAGATC-AATCATATTCAT----AT chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 ACCAGTAGATAGATCCAAGTATTAAGATCAAAAATCATATTCAT----AT chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 ACCATGTACATT-----------TTAAGATC-AATCATATTCATAAGTAT SNPs ---S-----------------SS--------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -----ATGAGCTCCGGAGCTGCTGCAGCCACGTACGCACGAATGCCGCCG chr7B_1_TraesCS7B01G000800 TTCATATGAGCTCCGGAGCTGCTGCAGCCACGTACGCACGAATGCCGCCG chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 TTCATATGAGCTCCGGAGCTGCTGCAGCCACGTACGCACGAATGCCGCCG chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 TTCATATGAGCTCCGCAGCTGCTGCATCCACGTACGCAGGAATGCCGCCG SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 CAGCCGCAAACAAAAACAGCAGCGGCGGCAGGAGGAGGT----------- chr7B_1_TraesCS7B01G000800 CAGCCGCAAACAAAAACAGCAGCGGCGGCAGGAGGAGGT----------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 CAGCCGCAAACAGGAACAGCAGCGGCGGCAGGAGGAGGT----------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 CCGCCGCAAACAGAAACAGCAGCGGC---AGGAGGAGGTCGGAGCCGCGC SNPs ------------S------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -CGG---ATCGCGCACCGCACCCGGGACAGCTGCGTGGCCGTCTTCTGCA chr7B_1_TraesCS7B01G000800 -CGG---ATCGCGCACCGCACCCGGGACAGCTGCGTGGCCGTCTTCTGCA chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -CGTCGCATCGCGCACCGCACCAGGGATAGCTGCGTGGCCGTCTTCTGCA chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 CCGTCGCATAGCGCACCGCACCAGGGACAGCTGCGTGGCCGTCTTCTGCA SNPs ---S------------------S--------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 GCAGGCTCTGCTCCCTCCTCCTCGCCGTCATCCTCGTGGCCGGCGTGGCG chr7B_1_TraesCS7B01G000800 GCAGGCTCTGCTCCCTCCTCCTCGCCGTCATCCTCGTGGCCGGCGTGGCG chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 GCAGGCTCTGCTCCCTCCTCCTCGCCGTCATCCTCGTGGCCGGCGTCGCC chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 GCACGCTCTGCTCCGTCCTCCTCGCCGTCATCCTCGTGGCCGGCGTCGCC SNPs ----------------------------------------------S--S forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 CTCTTCGTCGCCTGGCTCAGCCTCCGCCCACACCGCCCGCGCTTCGCCCT chr7B_1_TraesCS7B01G000800 CTCTTCGTCGCCTGGCTCAGCCTCCGCCCACACCGCCCGCGCTTCGCCCT chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 CTCTTTGTGGCCTGGCTCAGCCTCCGCCCGCACCGCCCGCGCTTCGCCCT chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 CTCTTCGTCGCCTGGCTCGGCCTCCGCCCGCACCGCCCGCGCTTCACCCT SNPs -----------------------------S-------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 CGCCTCCTTCTCCCTCTCCGGCACG------------------CAGGCCG chr7B_1_TraesCS7B01G000800 CGCCTCCTTCTCCCTCTCCGGCACG------------------CAGGCCG chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 CGCCTCCTTCTCCCTCTCCGGCACG------------------CAGGCCG chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 CTCCTCCTTCTCCCTCTCCGGCCCGGGGGGACAGGGACAGGGCCAGGCCG SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 CCTTCAAGGTGTCGGACCGCAACCCCAACCGCCACATCGGCATCTACTAC chr7B_1_TraesCS7B01G000800 CCTTCAAGGTGTCGGACCGCAACCCCAACCGCCACATCGGCATCTACTAC chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 CCTTCAACGTGTCGGACCGCAACCCCAACCGCCACATCGGCATCTACTAC chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 CCTTCAACGTGTCGGACCGCAACCCCAACCGCCACATCGGCATCTACTAC SNPs -------S------------------------------------------ forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 GACGGCGCCACGCGTGCCTCCCTCCGCTTCTACGACGCGCTCGTCGCCTC chr7B_1_TraesCS7B01G000800 GACGGCGCCACGCGTGCCTCCCTCCGCTTCTACGACGCGCTCGTCGCCTC chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 GACGGCGCCACGCGCGCCTCCCTCCGCTTCTACGACGCGCTGGTCGCCTC chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 GACGGCGCCACGCGCGCCTCCCTCCGCTTCTACGACGCGCTGGTGGCCTC SNPs --------------S--------------------------S-------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 CGGCCCGGCCTTCCCCGCCGGCTGGTACCAGCCCAACATGACCACCATCT chr7B_1_TraesCS7B01G000800 CGGCCCGGCCTTCCCCGCCGGCTGGTACCAGCCCAACATGACCACCATCT chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 CGGCCCGGCCTTCCCCGCCGGCTGGTACCAGCCCAACATGACCACCATCT chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 CGGCCCGGCCTTCCCCGCCGGCTGGTACCAGCCCAACATGACCACCATCT SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 CCATCGCCG---------------------------------ACCCCGCC chr7B_1_TraesCS7B01G000800 CCATCGCCG---------------------------------ACCCCGCC chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 CCATCGCCGGCGTGCTCGACGTCGTCGGCCCCACGCCCGCCGACCCGGCC chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 CCATCGCCGGCGTGCTCGACGTCGTCGGCCCAACGCCCGCCGACCCCGCC SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 GCCTGGCACTCCTTCTCCGCAGCGCTCCACGCCGGGCGCCTCCCGCTGCG chr7B_1_TraesCS7B01G000800 GCCTGGCACTCCTTCTCCGCAGCGCTCCACGCCGGGCGCCTCCCGCTGCG chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 GCGTGGCACTCCTTCTCCGCCGCTCTCCACGCCGGGCGCCTCCCGCTGCG chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 GCGTGGCACTCCTTCTCCGCCGCGCTCCACGCCGGGCGCCTCCCGCTGCG SNPs --S-----------------S----------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 CCTGGAGCTCGTCTTCTAAGGCGTCCGGTTCAGAGTCAGCAGCGTGTTCT chr7B_1_TraesCS7B01G000800 CCTGGAGCTCGTCTTCTAAGGCGTCCGGTTCAGAGTCAGCAGCGTGTTCT chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 CCTGGAGCTCGTCTTCTCAGGCGTCCGGTTCAGAGTCACCAGCCT----- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 CCTGGAGCTCGTCTTCTCAGGCGTCCGGTTCAGAGTCGCCAGTGTG---- SNPs -----------------S--------------------S-------SSSS forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 ACTTCCACTCCGGGCGGCAGAGGATGCATGTCAAGTGCGACCTGCTCGTG chr7B_1_TraesCS7B01G000800 ACTTCCACTCCGGGCGGCAGAGGATGCATGTCAAGTGCGACCTGCTCGTG chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -CTTCCACTCGGGGCGGCAGAGGATGCATGTCAAGTGCGACCTGCTCGTC chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 --TTCCACTCGGGTCGGCAGAGGATGCATGTCAAGTGCGACCTGCTCGTC SNPs S---------S--------------------------------------S forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 GGCGCCGACGGCAACCTGCTCAGCGAATCCGTGGGGGCATCCTGCGACAG chr7B_1_TraesCS7B01G000800 GGCGCCGACGGCAACCTGCTCAGCGAATCCGTGGGGGCATCCTGCGACAG chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 GGCGCCGACGGCAACCTGCTCCGCGAGTCCGTGGGGGCATCCTGCGACAG chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 GGCGCCGACGGCAACCTGCTCCGCGAATCCGTGGGGACATCCTGCGACAG SNPs ---------------------S---------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 ATACTTGTGA---------------------------------------- chr7B_1_TraesCS7B01G000800 ATACTTGTGAATTCT---CATGACTCATTACCTACTTAACTTACTCTAGT chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 ATACTTGTGAATTCT---CATGACTCATTAC-----GTACTTACTCTAGT chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 ATACTTGTGAATTCTTCTCATGACTCATTACAATTAGTACTTACTCTAGT SNPs -------------------------------SSSSSSS------------ forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 A-----GGAGTAGATTGTTGTTGGAGCTCGATCCATTTTTATTTGCTATA chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 AAAGTAGGAGTAGATTGTTGTTGGAGCTCGATCCATTTTTATTTGCTA-- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 A------GAGTAGATTGTTGTTGGAGGTCGATCGATTGTT---------- SNPs ------------------------------------------------SS forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 CATATACATCATAGGACCAACGAAAAGCAAATTAATTCGTCCGACCATGA chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 --------------------------------------GTCCGACCATTA SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 TTTATTTGGTCTTCCTTCCATGCATGCATGAGCACACAAATACTTGTATG chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 TCTAATTGCTCTTCCTTCCATGCATGCA----------------TGTATG SNPs -S--S---S-------------------SSSSSSSSSSSSSSSS------ forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 ATGCTGTTCGTTCGGGAAAGATACAAGGTGTTTTTCTTTTTCTTTTTTGA chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 ATGCTGTTCGTTC-----------------------TTTTTCTTTTTTCA SNPs -------------SSSSSSSSSSSSSSSSSSSSSSS------------S- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 ACCTTTATTACTTAGGTAATTATAAAAGGATCAATGTTTTTACTTCGTGC chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 ACTTTTATTACTTAGGTAATCATAAAAGGATCAAAGTTTTTACTTCCTAC SNPs --S-----------------S-------------S-----------S-S- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 ACCAACTTTCCTATTTCAAGTATATTTTGTTTTTTTTCTTTTTTCTTTTA chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 ACCAACTTTTCTGTTTCAAGTATATTTCGTCTTGTTTCTTTTTTCTTTTA SNPs ---------S--S--------------S--S--S---------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 CGAATAGATCATATCTATTATAAAGATTCACCGGAAGG------------ chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 CGAAAAGATCAGATCTATTATAAAGATTCACTGGAAGTGCAAAACACCTC SNPs ----S------S-------------------S-----S------------ forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 AAACAAATATTTATTACGTGCTTTGCAGAAATAGCAACATGAAGCGTTAT SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 TAGTGGATCATTCCGGGGAAGGGGCTNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATAGGCAG SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 TTTAGGTAGGTGTTTGCAGTCGGTTACGTAAATCTAGGATTATCGAGGAG SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 CGAGTCTTTGCCTTTACTTAGGTAATGGCCTATTGACAACACTTCTTCTT SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 TAATGTAATTGTTATACTTCTACCTGTATTCTATCTTACTTTCGCTTCCT SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 CTAGCTTATGTAAACTGGGATCAATTTATTATTCAACCCAAAGTACTTAT SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 CACTGACTTTTATTATTCTCTAAATAAATTTTCAAATTTTTGGTCTAAGT SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 TGTCTTGTATTTTCCCAAGATATAACAAAGTTATATGTCAGATCAACAAC SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 TGTATTTAGCTGGCTATGAGAAGTATGCCAAATATGTTTTTCAAATGGAT SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 TTATTCTACACCTTATATTAATATTTTCTTTACTATCTATTACTTTACAT SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 GTGCTAACTTCTAGGTTTAAATACTTTAACCTTTCAATGATTAAACAGTG SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 GACACGATACCAATAATACACAAAAAAGATATAATCTTAATTAGGTTAAT SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 AACGATATTAGGTGAATGCAATGGATTAGGTATATGCACTTTTATCTGAA SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 TATTATTTGGTATTCACTATTTAGTACACTATTCGCAATAGTATTTTACT SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 ATTCAGTACACTATTTGGAATAGTACTTCACTATTCATAGTAATATTTAT SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 TTTTTTGCTACTATTTACATGTTCTCTTATTTAGTAAACTAGTTTTTTCG SNPs -------------------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 --------------------GCTGGTGAGACTAATAGTACGCCCGATGTG chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 TAATGTCGGATATATTAGGTGCTGGCAAGGCTAATAGTACGGTACTCGGC SNPs -------------------------SS--S-----------SSSSSS-SS forward_477 -------------------------------------------------- reverse_3793 ------------------------------------------CCGATGTG input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 CGCAATGTTGTAATATCCTACTCAGTACTTACCATATTTTTTTATTATGT chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 ATTCAACATA---------------------------TTTTTTATTATGT SNPs SSSS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSS------------- forward_477 -------------------------------------------------- reverse_3793 CGCAATGTTGTA-------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 TGTTTCAGAAATAGCTAGGTCCATTCACTTGATTTGTCTTTAATTGCAAA chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 TGTTTCAAAAATAGCTAG-TCCATTTACTTGATTTGTTTTTAATTGCAAA SNPs -------S----------S------S-----------S------------ forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 CTTATGAGATTAATATCTATCGTCTTCTCAGACAGTTCCACCCAAAGGGA chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 CTTATGGGATTAATTCCTATCGTCTTCTCAGACAGTTTCACCCGAAAGGA SNPs ------S-------SS---------------------S-----S--S--- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 ACAACTCTTTATGACCACTAGGTTCTCACTAGACACCACACAAGGCTTGA chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 ACACTTCTTTACGACCACTAGGTTCTCACTAGACACCACACAAGGCTTGA SNPs ---SS------S-------------------------------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 TAGAGAACTACCGGTAGAGTTTTCTCCTATAAGATCCCTAGCAAAAGAAC chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 TAGAGAACTACCGGCAGAGTTTTC-CCTATAAAATCCCTAGCAAAAGAAC SNPs --------------S---------S-------S----------------- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 TCATCTCATAAATTCAAAAATAAAAATACTACGTGAAACACGAAATTGCT chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 TCATCCAATAAATTCAAAAATAAAAATATCAAGTGAAACACGAAACTGCT SNPs -----SS---------------------SS-S-------------S---- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 TCATTTCCACAACATAATT-ACATATGGTTTTCCCTTTCGGAAGACCCCG chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 TCATTTCCACAACATAATTTACATATGGTTTTTCCTTTTAGAGGTCCCGA SNPs --------------------------------S-----SS--S-S---SS forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 AAGGAAATAC--ATAAGCTAAGAAGGATACCATAATATTCTTGGTGATTA chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 ATGGAATGCATAATAAGCTAAGAAAGATACCTTAATATTCTTGGTGATTA SNPs -S----SSSS--------------S------S------------------ forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 CAGCGCCTTCAATAT--GGTGGCTATTCTAAAAAGTGGTGCTAGTTGTAC chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 CAGCGCCTTCAATATATGGTGGCTATTCTAAAAAGTGGTGCTAGTTATAC SNPs ----------------------------------------------S--- forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 TACTACTAAGGAGACTGAGAATGCTTTAGAGGTTGGTTCCTCCTCCTTT- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 TACTACTAAGGAGATTGAGAATGCTCTAGAGGTTGGTTCCTCCTCCTTTT SNPs --------------S----------S------------------------ forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 ----------------CCTTTGGGAGCCTTCTTTATTTTATTGCAGTACT chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 ATAGCCACGAGAGAGGCCTTTGGGAGCCTTCTTTATTTTATTGTAGTACT SNPs -------------------------------------------S------ forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 -------------------------------------------------- chr7B_1_TraesCS7B01G000800 CCATCCGTTTTAAAATGTAGTGCATATAGAATTTTTTAAAAAGTCAAACT chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr7B_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_1 -------------------------------------------------- chr5B_903 CCATCCGTTTCAAAATGTAGTGCATTTAGA--TTTTTGAAAAGTCAAACT SNPs ----------S--------------S----SS-----S------------ forward_477 -------------------------------------------------- reverse_3793 -------------------------------------------------- input_sequence_73259 ---------------------- chr7B_1_TraesCS7B01G000800 TTACAAATTTTGACCAAGTTTG chr7B_1 ---------------------- chr7B_1 ---------------------- chr7B_1 ---------------------- chr5D_1 ---------------------- chr5D_1 ---------------------- chr5D_1 ---------------------- chr5D_1 ---------------------- chr5B_1 ---------------------- chr5B_1 ---------------------- chr5B_903 TTACAAATTTTGATCAAGTTTG SNPs -------------S-------- forward_477 ---------------------- reverse_3793 ----------------------