Multiple sequence alignment - TraesCS7A01G542800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G542800 chr7A 100.000 3948 0 0 1 3948 719563668 719567615 0.000000e+00 7291.0
1 TraesCS7A01G542800 chr7B 89.925 2541 204 27 1444 3948 721198074 721200598 0.000000e+00 3227.0
2 TraesCS7A01G542800 chr7B 86.087 575 46 15 712 1273 721197375 721197928 4.390000e-164 588.0
3 TraesCS7A01G542800 chr7D 92.664 2222 127 21 1737 3942 623533219 623535420 0.000000e+00 3168.0
4 TraesCS7A01G542800 chr7D 82.401 1091 95 46 711 1742 623532095 623533147 0.000000e+00 861.0
5 TraesCS7A01G542800 chr2A 91.350 474 9 10 578 1027 759977537 759978002 1.560000e-173 619.0
6 TraesCS7A01G542800 chr2A 95.570 158 2 1 77 229 759977380 759977537 8.470000e-62 248.0
7 TraesCS7A01G542800 chr4B 82.135 459 40 16 1149 1579 648972967 648973411 4.850000e-94 355.0
8 TraesCS7A01G542800 chr1B 79.348 276 23 17 1329 1579 650268266 650268532 3.160000e-36 163.0
9 TraesCS7A01G542800 chr6B 97.297 37 1 0 1532 1568 296408728 296408692 3.290000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G542800 chr7A 719563668 719567615 3947 False 7291.0 7291 100.0000 1 3948 1 chr7A.!!$F1 3947
1 TraesCS7A01G542800 chr7B 721197375 721200598 3223 False 1907.5 3227 88.0060 712 3948 2 chr7B.!!$F1 3236
2 TraesCS7A01G542800 chr7D 623532095 623535420 3325 False 2014.5 3168 87.5325 711 3942 2 chr7D.!!$F1 3231
3 TraesCS7A01G542800 chr2A 759977380 759978002 622 False 433.5 619 93.4600 77 1027 2 chr2A.!!$F1 950

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 256 0.108138 TCTCCTTCTAAGCAAGGCGC 60.108 55.0 0.0 0.0 42.63 6.53 F
1302 1357 0.109873 CTGTGCTGCTTACTGCTTGC 60.110 55.0 0.0 0.0 43.37 4.01 F
2028 2204 0.179018 AGCAAAGAAGGCACGGAACT 60.179 50.0 0.0 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2005 2181 0.385390 CCGTGCCTTCTTTGCTGTTT 59.615 50.0 0.0 0.0 0.0 2.83 R
2358 2537 0.105246 AACCCATTGCCCCTGTCAAA 60.105 50.0 0.0 0.0 0.0 2.69 R
3108 3301 0.446222 CCACTGCGATAACAAACCCG 59.554 55.0 0.0 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
229 235 7.506328 AACTAGTCCTCATTTTGTTTACCAC 57.494 36.000 0.00 0.00 0.00 4.16
230 236 6.838382 ACTAGTCCTCATTTTGTTTACCACT 58.162 36.000 0.00 0.00 0.00 4.00
231 237 7.287810 ACTAGTCCTCATTTTGTTTACCACTT 58.712 34.615 0.00 0.00 0.00 3.16
232 238 6.635030 AGTCCTCATTTTGTTTACCACTTC 57.365 37.500 0.00 0.00 0.00 3.01
233 239 6.365520 AGTCCTCATTTTGTTTACCACTTCT 58.634 36.000 0.00 0.00 0.00 2.85
234 240 6.486993 AGTCCTCATTTTGTTTACCACTTCTC 59.513 38.462 0.00 0.00 0.00 2.87
235 241 5.768164 TCCTCATTTTGTTTACCACTTCTCC 59.232 40.000 0.00 0.00 0.00 3.71
236 242 5.770162 CCTCATTTTGTTTACCACTTCTCCT 59.230 40.000 0.00 0.00 0.00 3.69
237 243 6.265422 CCTCATTTTGTTTACCACTTCTCCTT 59.735 38.462 0.00 0.00 0.00 3.36
238 244 7.272037 TCATTTTGTTTACCACTTCTCCTTC 57.728 36.000 0.00 0.00 0.00 3.46
239 245 7.060421 TCATTTTGTTTACCACTTCTCCTTCT 58.940 34.615 0.00 0.00 0.00 2.85
240 246 8.215050 TCATTTTGTTTACCACTTCTCCTTCTA 58.785 33.333 0.00 0.00 0.00 2.10
241 247 8.846211 CATTTTGTTTACCACTTCTCCTTCTAA 58.154 33.333 0.00 0.00 0.00 2.10
242 248 8.446599 TTTTGTTTACCACTTCTCCTTCTAAG 57.553 34.615 0.00 0.00 0.00 2.18
243 249 5.548406 TGTTTACCACTTCTCCTTCTAAGC 58.452 41.667 0.00 0.00 0.00 3.09
244 250 5.071250 TGTTTACCACTTCTCCTTCTAAGCA 59.929 40.000 0.00 0.00 0.00 3.91
245 251 5.818678 TTACCACTTCTCCTTCTAAGCAA 57.181 39.130 0.00 0.00 0.00 3.91
246 252 4.278975 ACCACTTCTCCTTCTAAGCAAG 57.721 45.455 0.00 0.00 0.00 4.01
247 253 3.008485 ACCACTTCTCCTTCTAAGCAAGG 59.992 47.826 0.00 0.00 44.09 3.61
248 254 3.006247 CACTTCTCCTTCTAAGCAAGGC 58.994 50.000 0.00 0.00 42.63 4.35
249 255 2.275318 CTTCTCCTTCTAAGCAAGGCG 58.725 52.381 0.00 0.00 42.63 5.52
250 256 0.108138 TCTCCTTCTAAGCAAGGCGC 60.108 55.000 0.00 0.00 42.63 6.53
265 271 6.910536 GCAAGGCGCTATAGATAAACATAT 57.089 37.500 7.64 0.00 37.77 1.78
266 272 6.938542 GCAAGGCGCTATAGATAAACATATC 58.061 40.000 7.64 0.00 37.77 1.63
267 273 6.291849 GCAAGGCGCTATAGATAAACATATCG 60.292 42.308 7.64 0.00 37.77 2.92
268 274 6.452494 AGGCGCTATAGATAAACATATCGT 57.548 37.500 7.64 0.00 0.00 3.73
269 275 6.864342 AGGCGCTATAGATAAACATATCGTT 58.136 36.000 7.64 0.00 40.50 3.85
271 277 7.817962 AGGCGCTATAGATAAACATATCGTTTT 59.182 33.333 7.64 0.00 45.79 2.43
272 278 9.079833 GGCGCTATAGATAAACATATCGTTTTA 57.920 33.333 7.64 0.00 45.79 1.52
280 286 9.864034 AGATAAACATATCGTTTTATTTGCGAG 57.136 29.630 8.06 0.00 45.79 5.03
281 287 9.103048 GATAAACATATCGTTTTATTTGCGAGG 57.897 33.333 8.06 0.00 45.79 4.63
282 288 6.671614 AACATATCGTTTTATTTGCGAGGA 57.328 33.333 0.00 0.00 38.06 3.71
283 289 6.861065 ACATATCGTTTTATTTGCGAGGAT 57.139 33.333 0.00 0.00 38.06 3.24
284 290 6.658831 ACATATCGTTTTATTTGCGAGGATG 58.341 36.000 0.00 0.00 38.06 3.51
285 291 6.260050 ACATATCGTTTTATTTGCGAGGATGT 59.740 34.615 0.00 0.00 38.81 3.06
286 292 5.560966 ATCGTTTTATTTGCGAGGATGTT 57.439 34.783 0.00 0.00 38.06 2.71
287 293 5.365403 TCGTTTTATTTGCGAGGATGTTT 57.635 34.783 0.00 0.00 0.00 2.83
288 294 5.387279 TCGTTTTATTTGCGAGGATGTTTC 58.613 37.500 0.00 0.00 0.00 2.78
289 295 5.049336 TCGTTTTATTTGCGAGGATGTTTCA 60.049 36.000 0.00 0.00 0.00 2.69
290 296 5.283717 CGTTTTATTTGCGAGGATGTTTCAG 59.716 40.000 0.00 0.00 0.00 3.02
291 297 6.378582 GTTTTATTTGCGAGGATGTTTCAGA 58.621 36.000 0.00 0.00 0.00 3.27
292 298 6.567687 TTTATTTGCGAGGATGTTTCAGAA 57.432 33.333 0.00 0.00 0.00 3.02
293 299 6.567687 TTATTTGCGAGGATGTTTCAGAAA 57.432 33.333 0.00 0.00 0.00 2.52
294 300 5.649782 ATTTGCGAGGATGTTTCAGAAAT 57.350 34.783 0.00 0.00 0.00 2.17
295 301 4.685169 TTGCGAGGATGTTTCAGAAATC 57.315 40.909 0.00 0.00 0.00 2.17
296 302 3.673902 TGCGAGGATGTTTCAGAAATCA 58.326 40.909 0.00 0.15 0.00 2.57
297 303 4.264253 TGCGAGGATGTTTCAGAAATCAT 58.736 39.130 0.00 4.97 0.00 2.45
298 304 4.701651 TGCGAGGATGTTTCAGAAATCATT 59.298 37.500 0.00 0.00 0.00 2.57
299 305 5.032863 GCGAGGATGTTTCAGAAATCATTG 58.967 41.667 0.00 0.00 0.00 2.82
300 306 5.163723 GCGAGGATGTTTCAGAAATCATTGA 60.164 40.000 0.00 0.00 0.00 2.57
301 307 6.253746 CGAGGATGTTTCAGAAATCATTGAC 58.746 40.000 0.00 1.49 0.00 3.18
302 308 6.093219 CGAGGATGTTTCAGAAATCATTGACT 59.907 38.462 0.00 5.37 0.00 3.41
303 309 7.361542 CGAGGATGTTTCAGAAATCATTGACTT 60.362 37.037 0.00 0.00 0.00 3.01
304 310 8.186709 AGGATGTTTCAGAAATCATTGACTTT 57.813 30.769 0.00 0.00 0.00 2.66
305 311 8.645110 AGGATGTTTCAGAAATCATTGACTTTT 58.355 29.630 0.00 0.00 0.00 2.27
306 312 9.912634 GGATGTTTCAGAAATCATTGACTTTTA 57.087 29.630 0.00 0.00 0.00 1.52
340 346 8.983702 AAAACAAGTACTATTTGGTTAGGTGA 57.016 30.769 0.00 0.00 34.53 4.02
341 347 9.582648 AAAACAAGTACTATTTGGTTAGGTGAT 57.417 29.630 0.00 0.00 34.53 3.06
342 348 9.582648 AAACAAGTACTATTTGGTTAGGTGATT 57.417 29.630 0.00 0.00 33.90 2.57
343 349 9.582648 AACAAGTACTATTTGGTTAGGTGATTT 57.417 29.630 0.00 0.00 0.00 2.17
344 350 9.010029 ACAAGTACTATTTGGTTAGGTGATTTG 57.990 33.333 0.00 0.00 0.00 2.32
345 351 9.010029 CAAGTACTATTTGGTTAGGTGATTTGT 57.990 33.333 0.00 0.00 0.00 2.83
346 352 9.582648 AAGTACTATTTGGTTAGGTGATTTGTT 57.417 29.630 0.00 0.00 0.00 2.83
350 356 8.520351 ACTATTTGGTTAGGTGATTTGTTAAGC 58.480 33.333 0.00 0.00 0.00 3.09
351 357 6.969993 TTTGGTTAGGTGATTTGTTAAGCT 57.030 33.333 0.00 0.00 0.00 3.74
352 358 6.969993 TTGGTTAGGTGATTTGTTAAGCTT 57.030 33.333 3.48 3.48 0.00 3.74
353 359 6.969993 TGGTTAGGTGATTTGTTAAGCTTT 57.030 33.333 3.20 0.00 0.00 3.51
354 360 6.977213 TGGTTAGGTGATTTGTTAAGCTTTC 58.023 36.000 3.20 0.00 0.00 2.62
355 361 6.547880 TGGTTAGGTGATTTGTTAAGCTTTCA 59.452 34.615 3.20 1.71 0.00 2.69
356 362 6.861572 GGTTAGGTGATTTGTTAAGCTTTCAC 59.138 38.462 15.33 15.33 34.24 3.18
357 363 7.255486 GGTTAGGTGATTTGTTAAGCTTTCACT 60.255 37.037 20.42 12.23 35.12 3.41
358 364 6.076981 AGGTGATTTGTTAAGCTTTCACTG 57.923 37.500 20.42 0.00 35.12 3.66
359 365 5.827797 AGGTGATTTGTTAAGCTTTCACTGA 59.172 36.000 20.42 6.70 35.12 3.41
360 366 6.321181 AGGTGATTTGTTAAGCTTTCACTGAA 59.679 34.615 20.42 11.16 35.12 3.02
361 367 6.978080 GGTGATTTGTTAAGCTTTCACTGAAA 59.022 34.615 20.42 4.16 35.12 2.69
362 368 7.653311 GGTGATTTGTTAAGCTTTCACTGAAAT 59.347 33.333 20.42 13.16 35.12 2.17
363 369 9.677567 GTGATTTGTTAAGCTTTCACTGAAATA 57.322 29.630 16.06 0.00 30.85 1.40
364 370 9.897744 TGATTTGTTAAGCTTTCACTGAAATAG 57.102 29.630 3.20 0.00 30.85 1.73
365 371 8.748380 ATTTGTTAAGCTTTCACTGAAATAGC 57.252 30.769 3.20 6.07 30.85 2.97
366 372 7.510549 TTGTTAAGCTTTCACTGAAATAGCT 57.489 32.000 3.20 10.90 35.55 3.32
367 373 6.902341 TGTTAAGCTTTCACTGAAATAGCTG 58.098 36.000 15.65 2.14 34.72 4.24
368 374 6.486657 TGTTAAGCTTTCACTGAAATAGCTGT 59.513 34.615 15.65 10.12 34.72 4.40
369 375 5.619625 AAGCTTTCACTGAAATAGCTGTC 57.380 39.130 15.65 0.00 34.72 3.51
370 376 4.904241 AGCTTTCACTGAAATAGCTGTCT 58.096 39.130 14.60 0.00 33.75 3.41
371 377 4.934602 AGCTTTCACTGAAATAGCTGTCTC 59.065 41.667 14.60 0.00 33.75 3.36
372 378 4.692625 GCTTTCACTGAAATAGCTGTCTCA 59.307 41.667 4.65 0.00 30.85 3.27
373 379 5.353678 GCTTTCACTGAAATAGCTGTCTCAT 59.646 40.000 4.65 0.00 30.85 2.90
374 380 6.536582 GCTTTCACTGAAATAGCTGTCTCATA 59.463 38.462 4.65 0.00 30.85 2.15
375 381 7.226325 GCTTTCACTGAAATAGCTGTCTCATAT 59.774 37.037 4.65 0.00 30.85 1.78
376 382 9.755804 CTTTCACTGAAATAGCTGTCTCATATA 57.244 33.333 4.65 0.00 30.85 0.86
377 383 9.755804 TTTCACTGAAATAGCTGTCTCATATAG 57.244 33.333 0.00 0.00 0.00 1.31
378 384 8.697507 TCACTGAAATAGCTGTCTCATATAGA 57.302 34.615 0.00 0.00 0.00 1.98
379 385 9.136323 TCACTGAAATAGCTGTCTCATATAGAA 57.864 33.333 0.00 0.00 35.47 2.10
380 386 9.755804 CACTGAAATAGCTGTCTCATATAGAAA 57.244 33.333 0.00 0.00 35.47 2.52
405 411 9.434420 AAAAATGTGAATCTGTTTTTCAAGTGA 57.566 25.926 0.00 0.00 35.03 3.41
406 412 9.434420 AAAATGTGAATCTGTTTTTCAAGTGAA 57.566 25.926 0.00 0.00 35.03 3.18
407 413 9.603921 AAATGTGAATCTGTTTTTCAAGTGAAT 57.396 25.926 0.00 0.00 35.03 2.57
408 414 9.603921 AATGTGAATCTGTTTTTCAAGTGAATT 57.396 25.926 0.00 0.00 35.03 2.17
409 415 8.633075 TGTGAATCTGTTTTTCAAGTGAATTC 57.367 30.769 0.00 0.00 35.03 2.17
410 416 8.249638 TGTGAATCTGTTTTTCAAGTGAATTCA 58.750 29.630 3.38 3.38 35.03 2.57
411 417 8.749499 GTGAATCTGTTTTTCAAGTGAATTCAG 58.251 33.333 8.80 0.00 35.03 3.02
412 418 8.685427 TGAATCTGTTTTTCAAGTGAATTCAGA 58.315 29.630 8.80 17.32 38.42 3.27
413 419 9.520204 GAATCTGTTTTTCAAGTGAATTCAGAA 57.480 29.630 8.80 6.45 38.04 3.02
432 438 9.985730 ATTCAGAATATGTTTTTCTTTTCAGCA 57.014 25.926 0.00 0.00 31.11 4.41
433 439 9.814899 TTCAGAATATGTTTTTCTTTTCAGCAA 57.185 25.926 0.00 0.00 31.11 3.91
434 440 9.814899 TCAGAATATGTTTTTCTTTTCAGCAAA 57.185 25.926 0.00 0.00 31.11 3.68
438 444 9.558396 AATATGTTTTTCTTTTCAGCAAATCCA 57.442 25.926 0.00 0.00 0.00 3.41
439 445 7.862512 ATGTTTTTCTTTTCAGCAAATCCAA 57.137 28.000 0.00 0.00 0.00 3.53
440 446 7.678947 TGTTTTTCTTTTCAGCAAATCCAAA 57.321 28.000 0.00 0.00 0.00 3.28
441 447 8.103948 TGTTTTTCTTTTCAGCAAATCCAAAA 57.896 26.923 0.00 0.00 0.00 2.44
442 448 8.738106 TGTTTTTCTTTTCAGCAAATCCAAAAT 58.262 25.926 0.00 0.00 0.00 1.82
446 452 9.558396 TTTCTTTTCAGCAAATCCAAAATATGT 57.442 25.926 0.00 0.00 0.00 2.29
447 453 8.761575 TCTTTTCAGCAAATCCAAAATATGTC 57.238 30.769 0.00 0.00 0.00 3.06
448 454 7.818930 TCTTTTCAGCAAATCCAAAATATGTCC 59.181 33.333 0.00 0.00 0.00 4.02
449 455 6.855763 TTCAGCAAATCCAAAATATGTCCT 57.144 33.333 0.00 0.00 0.00 3.85
450 456 7.953005 TTCAGCAAATCCAAAATATGTCCTA 57.047 32.000 0.00 0.00 0.00 2.94
451 457 7.572523 TCAGCAAATCCAAAATATGTCCTAG 57.427 36.000 0.00 0.00 0.00 3.02
452 458 6.039717 TCAGCAAATCCAAAATATGTCCTAGC 59.960 38.462 0.00 0.00 0.00 3.42
453 459 5.302823 AGCAAATCCAAAATATGTCCTAGCC 59.697 40.000 0.00 0.00 0.00 3.93
454 460 5.509670 GCAAATCCAAAATATGTCCTAGCCC 60.510 44.000 0.00 0.00 0.00 5.19
455 461 5.402054 AATCCAAAATATGTCCTAGCCCA 57.598 39.130 0.00 0.00 0.00 5.36
456 462 4.437682 TCCAAAATATGTCCTAGCCCAG 57.562 45.455 0.00 0.00 0.00 4.45
458 464 3.490348 CAAAATATGTCCTAGCCCAGGG 58.510 50.000 0.00 0.00 45.58 4.45
459 465 2.815357 AATATGTCCTAGCCCAGGGA 57.185 50.000 10.89 0.00 45.58 4.20
460 466 3.297994 AATATGTCCTAGCCCAGGGAT 57.702 47.619 10.89 5.16 45.58 3.85
461 467 4.435977 AATATGTCCTAGCCCAGGGATA 57.564 45.455 10.89 6.45 45.58 2.59
462 468 4.651201 ATATGTCCTAGCCCAGGGATAT 57.349 45.455 10.89 0.00 45.58 1.63
463 469 5.768454 ATATGTCCTAGCCCAGGGATATA 57.232 43.478 10.89 0.00 45.58 0.86
464 470 3.935240 TGTCCTAGCCCAGGGATATAA 57.065 47.619 10.89 0.00 45.58 0.98
465 471 4.222333 TGTCCTAGCCCAGGGATATAAA 57.778 45.455 10.89 0.00 45.58 1.40
466 472 4.572978 TGTCCTAGCCCAGGGATATAAAA 58.427 43.478 10.89 0.00 45.58 1.52
467 473 4.597507 TGTCCTAGCCCAGGGATATAAAAG 59.402 45.833 10.89 0.00 45.58 2.27
468 474 4.597940 GTCCTAGCCCAGGGATATAAAAGT 59.402 45.833 10.89 0.00 45.58 2.66
469 475 4.844655 TCCTAGCCCAGGGATATAAAAGTC 59.155 45.833 10.89 0.00 45.58 3.01
470 476 4.846940 CCTAGCCCAGGGATATAAAAGTCT 59.153 45.833 10.89 0.00 41.26 3.24
471 477 5.310857 CCTAGCCCAGGGATATAAAAGTCTT 59.689 44.000 10.89 0.00 41.26 3.01
472 478 5.311844 AGCCCAGGGATATAAAAGTCTTC 57.688 43.478 10.89 0.00 0.00 2.87
473 479 4.978388 AGCCCAGGGATATAAAAGTCTTCT 59.022 41.667 10.89 0.00 0.00 2.85
474 480 5.433381 AGCCCAGGGATATAAAAGTCTTCTT 59.567 40.000 10.89 0.00 35.14 2.52
475 481 5.532779 GCCCAGGGATATAAAAGTCTTCTTG 59.467 44.000 10.89 0.00 33.79 3.02
476 482 6.634955 GCCCAGGGATATAAAAGTCTTCTTGA 60.635 42.308 10.89 0.00 33.79 3.02
477 483 7.521669 CCCAGGGATATAAAAGTCTTCTTGAT 58.478 38.462 0.00 0.00 33.79 2.57
478 484 7.446625 CCCAGGGATATAAAAGTCTTCTTGATG 59.553 40.741 0.00 0.00 33.79 3.07
479 485 7.995488 CCAGGGATATAAAAGTCTTCTTGATGT 59.005 37.037 0.00 0.00 33.79 3.06
480 486 9.401058 CAGGGATATAAAAGTCTTCTTGATGTT 57.599 33.333 0.00 0.00 33.79 2.71
481 487 9.401058 AGGGATATAAAAGTCTTCTTGATGTTG 57.599 33.333 0.00 0.00 33.79 3.33
482 488 9.396022 GGGATATAAAAGTCTTCTTGATGTTGA 57.604 33.333 0.00 0.00 33.79 3.18
486 492 5.444663 AAAGTCTTCTTGATGTTGAAGCC 57.555 39.130 0.00 0.00 39.41 4.35
487 493 3.416156 AGTCTTCTTGATGTTGAAGCCC 58.584 45.455 0.00 0.00 39.41 5.19
488 494 3.149196 GTCTTCTTGATGTTGAAGCCCA 58.851 45.455 0.00 0.00 39.41 5.36
489 495 3.190118 GTCTTCTTGATGTTGAAGCCCAG 59.810 47.826 0.00 0.00 39.41 4.45
490 496 3.072915 TCTTCTTGATGTTGAAGCCCAGA 59.927 43.478 0.00 0.00 39.41 3.86
491 497 2.783135 TCTTGATGTTGAAGCCCAGAC 58.217 47.619 0.00 0.00 0.00 3.51
492 498 1.815003 CTTGATGTTGAAGCCCAGACC 59.185 52.381 0.00 0.00 0.00 3.85
493 499 0.321564 TGATGTTGAAGCCCAGACCG 60.322 55.000 0.00 0.00 0.00 4.79
494 500 1.002134 ATGTTGAAGCCCAGACCGG 60.002 57.895 0.00 0.00 0.00 5.28
506 512 4.642542 GACCGGCCCGCTCGTATC 62.643 72.222 0.00 0.00 0.00 2.24
508 514 4.344474 CCGGCCCGCTCGTATCTC 62.344 72.222 0.00 0.00 0.00 2.75
509 515 4.685026 CGGCCCGCTCGTATCTCG 62.685 72.222 0.00 0.00 41.41 4.04
510 516 4.344474 GGCCCGCTCGTATCTCGG 62.344 72.222 0.00 0.00 42.58 4.63
516 522 3.288290 CTCGTATCTCGGCGGCCT 61.288 66.667 18.34 0.00 40.32 5.19
517 523 2.831742 TCGTATCTCGGCGGCCTT 60.832 61.111 18.34 1.70 40.32 4.35
518 524 2.106332 CGTATCTCGGCGGCCTTT 59.894 61.111 18.34 1.33 35.71 3.11
519 525 1.949631 CGTATCTCGGCGGCCTTTC 60.950 63.158 18.34 0.88 35.71 2.62
520 526 1.143183 GTATCTCGGCGGCCTTTCA 59.857 57.895 18.34 0.00 0.00 2.69
521 527 0.461339 GTATCTCGGCGGCCTTTCAA 60.461 55.000 18.34 0.00 0.00 2.69
522 528 0.179084 TATCTCGGCGGCCTTTCAAG 60.179 55.000 18.34 6.67 0.00 3.02
536 542 5.774498 CCTTTCAAGGCAGTTTTTAGACT 57.226 39.130 0.00 0.00 39.76 3.24
537 543 6.877611 CCTTTCAAGGCAGTTTTTAGACTA 57.122 37.500 0.00 0.00 39.76 2.59
538 544 6.903419 CCTTTCAAGGCAGTTTTTAGACTAG 58.097 40.000 0.00 0.00 39.76 2.57
539 545 6.486993 CCTTTCAAGGCAGTTTTTAGACTAGT 59.513 38.462 0.00 0.00 39.76 2.57
540 546 7.308049 CCTTTCAAGGCAGTTTTTAGACTAGTC 60.308 40.741 15.41 15.41 39.76 2.59
541 547 6.420913 TCAAGGCAGTTTTTAGACTAGTCT 57.579 37.500 27.72 27.72 43.40 3.24
542 548 6.827727 TCAAGGCAGTTTTTAGACTAGTCTT 58.172 36.000 29.57 14.26 40.93 3.01
543 549 6.929606 TCAAGGCAGTTTTTAGACTAGTCTTC 59.070 38.462 29.57 14.80 40.93 2.87
544 550 6.420913 AGGCAGTTTTTAGACTAGTCTTCA 57.579 37.500 29.57 14.71 40.93 3.02
545 551 6.224584 AGGCAGTTTTTAGACTAGTCTTCAC 58.775 40.000 29.57 19.31 40.93 3.18
546 552 5.989777 GGCAGTTTTTAGACTAGTCTTCACA 59.010 40.000 29.57 9.86 40.93 3.58
547 553 6.073711 GGCAGTTTTTAGACTAGTCTTCACAC 60.074 42.308 29.57 19.93 40.93 3.82
548 554 6.479001 GCAGTTTTTAGACTAGTCTTCACACA 59.521 38.462 29.57 8.70 40.93 3.72
549 555 7.171678 GCAGTTTTTAGACTAGTCTTCACACAT 59.828 37.037 29.57 9.11 40.93 3.21
550 556 9.046296 CAGTTTTTAGACTAGTCTTCACACATT 57.954 33.333 29.57 5.74 40.93 2.71
551 557 9.614792 AGTTTTTAGACTAGTCTTCACACATTT 57.385 29.630 29.57 5.00 40.93 2.32
552 558 9.865484 GTTTTTAGACTAGTCTTCACACATTTC 57.135 33.333 29.57 7.69 40.93 2.17
553 559 9.832445 TTTTTAGACTAGTCTTCACACATTTCT 57.168 29.630 29.57 4.27 40.93 2.52
558 564 8.807118 AGACTAGTCTTCACACATTTCTAATCA 58.193 33.333 20.00 0.00 36.31 2.57
559 565 9.424319 GACTAGTCTTCACACATTTCTAATCAA 57.576 33.333 15.91 0.00 0.00 2.57
560 566 9.429359 ACTAGTCTTCACACATTTCTAATCAAG 57.571 33.333 0.00 0.00 0.00 3.02
561 567 9.645059 CTAGTCTTCACACATTTCTAATCAAGA 57.355 33.333 0.00 0.00 0.00 3.02
563 569 8.944029 AGTCTTCACACATTTCTAATCAAGATG 58.056 33.333 0.00 0.00 33.05 2.90
564 570 7.695618 GTCTTCACACATTTCTAATCAAGATGC 59.304 37.037 0.00 0.00 33.05 3.91
565 571 7.609146 TCTTCACACATTTCTAATCAAGATGCT 59.391 33.333 0.00 0.00 33.05 3.79
566 572 8.791327 TTCACACATTTCTAATCAAGATGCTA 57.209 30.769 0.00 0.00 33.05 3.49
567 573 8.201554 TCACACATTTCTAATCAAGATGCTAC 57.798 34.615 0.00 0.00 33.05 3.58
568 574 7.280876 TCACACATTTCTAATCAAGATGCTACC 59.719 37.037 0.00 0.00 33.05 3.18
569 575 7.281774 CACACATTTCTAATCAAGATGCTACCT 59.718 37.037 0.00 0.00 33.05 3.08
570 576 8.486210 ACACATTTCTAATCAAGATGCTACCTA 58.514 33.333 0.00 0.00 33.05 3.08
571 577 8.986847 CACATTTCTAATCAAGATGCTACCTAG 58.013 37.037 0.00 0.00 33.05 3.02
572 578 8.928448 ACATTTCTAATCAAGATGCTACCTAGA 58.072 33.333 0.00 0.00 33.05 2.43
573 579 9.941325 CATTTCTAATCAAGATGCTACCTAGAT 57.059 33.333 0.00 0.00 33.05 1.98
607 613 4.740741 TGCGACGATTTTTCAGAAATCA 57.259 36.364 0.00 0.00 36.66 2.57
946 987 3.883744 AAGTGCGGGACAGAAGGCG 62.884 63.158 1.61 0.00 0.00 5.52
949 990 4.388499 GCGGGACAGAAGGCGGAA 62.388 66.667 0.00 0.00 0.00 4.30
950 991 2.434359 CGGGACAGAAGGCGGAAC 60.434 66.667 0.00 0.00 0.00 3.62
1175 1222 2.781431 ATTCCGAGGGTTTGTGGCCC 62.781 60.000 0.00 0.00 46.43 5.80
1295 1350 1.660560 CCATGGCCTGTGCTGCTTAC 61.661 60.000 3.32 0.00 37.74 2.34
1296 1351 0.679002 CATGGCCTGTGCTGCTTACT 60.679 55.000 3.32 0.00 37.74 2.24
1298 1353 2.694760 GGCCTGTGCTGCTTACTGC 61.695 63.158 0.00 0.00 40.88 4.40
1299 1354 1.673665 GCCTGTGCTGCTTACTGCT 60.674 57.895 0.00 0.00 43.37 4.24
1301 1356 0.520404 CCTGTGCTGCTTACTGCTTG 59.480 55.000 0.00 0.00 43.37 4.01
1302 1357 0.109873 CTGTGCTGCTTACTGCTTGC 60.110 55.000 0.00 0.00 43.37 4.01
1303 1358 1.154338 GTGCTGCTTACTGCTTGCG 60.154 57.895 0.00 0.00 41.77 4.85
1309 1366 1.790387 CTTACTGCTTGCGACTGCC 59.210 57.895 0.00 0.00 41.78 4.85
1331 1388 1.675641 GGAGCTGAATTGCCGTGGT 60.676 57.895 0.00 0.00 0.00 4.16
1430 1495 1.787012 CAAAAGGATGCGCTTTTGCT 58.213 45.000 16.47 6.69 41.55 3.91
1431 1496 2.137523 CAAAAGGATGCGCTTTTGCTT 58.862 42.857 16.47 11.63 41.55 3.91
1432 1497 1.787012 AAAGGATGCGCTTTTGCTTG 58.213 45.000 9.73 0.00 44.80 4.01
1433 1498 0.668401 AAGGATGCGCTTTTGCTTGC 60.668 50.000 9.73 0.00 44.80 4.01
1434 1499 1.373246 GGATGCGCTTTTGCTTGCA 60.373 52.632 9.73 0.00 43.69 4.08
1436 1501 0.665369 GATGCGCTTTTGCTTGCACT 60.665 50.000 9.73 0.00 42.71 4.40
1438 1503 1.299316 GCGCTTTTGCTTGCACTGA 60.299 52.632 0.00 0.00 44.80 3.41
1439 1504 0.665369 GCGCTTTTGCTTGCACTGAT 60.665 50.000 0.00 0.00 44.80 2.90
1440 1505 1.774639 CGCTTTTGCTTGCACTGATT 58.225 45.000 0.00 0.00 44.80 2.57
1441 1506 2.921912 GCGCTTTTGCTTGCACTGATTA 60.922 45.455 0.00 0.00 44.80 1.75
1442 1507 3.504863 CGCTTTTGCTTGCACTGATTAT 58.495 40.909 0.00 0.00 44.80 1.28
1526 1612 5.937540 TCTGCAAAAACGAATGGATAGAAGA 59.062 36.000 0.00 0.00 0.00 2.87
1527 1613 6.599244 TCTGCAAAAACGAATGGATAGAAGAT 59.401 34.615 0.00 0.00 0.00 2.40
1528 1614 6.554419 TGCAAAAACGAATGGATAGAAGATG 58.446 36.000 0.00 0.00 0.00 2.90
1560 1646 3.690139 GCTAGTTTCTTAGCCTGGGAAAC 59.310 47.826 14.63 14.63 45.04 2.78
1622 1711 2.520982 CCGGGCTCGAGATACCCA 60.521 66.667 22.00 0.00 44.49 4.51
1642 1731 4.631813 CCCACTGTCTTTTCTAGCATACAC 59.368 45.833 0.00 0.00 0.00 2.90
1647 1736 6.210784 ACTGTCTTTTCTAGCATACACCTGTA 59.789 38.462 0.00 0.00 34.67 2.74
1654 1743 5.670485 TCTAGCATACACCTGTAACCATTG 58.330 41.667 0.00 0.00 33.76 2.82
1655 1744 4.301072 AGCATACACCTGTAACCATTGT 57.699 40.909 0.00 0.00 33.76 2.71
1656 1745 4.009675 AGCATACACCTGTAACCATTGTG 58.990 43.478 0.00 0.00 33.76 3.33
1697 1793 3.005791 GGTTTTCAATTGGTAGCACAGCT 59.994 43.478 5.42 0.00 43.41 4.24
1711 1808 4.202441 AGCACAGCTTTTTCTTCTTCTCA 58.798 39.130 0.00 0.00 33.89 3.27
1719 1816 8.571336 CAGCTTTTTCTTCTTCTCATTCCTTTA 58.429 33.333 0.00 0.00 0.00 1.85
1726 1823 8.154649 TCTTCTTCTCATTCCTTTAAACACAC 57.845 34.615 0.00 0.00 0.00 3.82
1756 1931 8.038351 TGTTTCGTATCCTCTGATTTCATGTAA 58.962 33.333 0.00 0.00 32.18 2.41
1816 1992 5.163673 CCTCTCTGCCTTTTATTCTCTTTGC 60.164 44.000 0.00 0.00 0.00 3.68
1891 2067 3.906218 ACATAATGCAGCTGAGGGATAGA 59.094 43.478 20.43 0.00 0.00 1.98
1965 2141 2.050836 TTTGCGGAAGAGAGCACCCA 62.051 55.000 0.00 0.00 43.69 4.51
2005 2181 2.838225 GCCGGAGCCCTAGCACTA 60.838 66.667 5.05 0.00 43.56 2.74
2021 2197 2.034558 GCACTAAACAGCAAAGAAGGCA 59.965 45.455 0.00 0.00 0.00 4.75
2028 2204 0.179018 AGCAAAGAAGGCACGGAACT 60.179 50.000 0.00 0.00 0.00 3.01
2034 2210 1.968493 AGAAGGCACGGAACTAGACAA 59.032 47.619 0.00 0.00 0.00 3.18
2038 2214 1.000506 GGCACGGAACTAGACAACTCA 59.999 52.381 0.00 0.00 0.00 3.41
2059 2235 3.428532 AGAAGCAAATTCTGGCATCAGT 58.571 40.909 0.00 0.00 46.80 3.41
2098 2274 0.905357 CCAGTGTCCGGAAGAAGGAT 59.095 55.000 5.23 0.00 40.30 3.24
2382 2561 2.121608 GGGGCAATGGGTTCCCAA 59.878 61.111 14.91 0.00 41.85 4.12
2451 2630 1.742761 GCTGCTGGCTTGATACTGAA 58.257 50.000 0.00 0.00 38.06 3.02
2452 2631 2.086869 GCTGCTGGCTTGATACTGAAA 58.913 47.619 0.00 0.00 38.06 2.69
2464 2643 6.621596 GCTTGATACTGAAATCGCAGAACTTT 60.622 38.462 0.00 0.00 43.58 2.66
2479 2658 1.347564 CTTTGCAGCATCTCTCGCG 59.652 57.895 0.00 0.00 0.00 5.87
2533 2715 0.181114 AAGCCAGCAGTGTCTTCACA 59.819 50.000 1.36 0.00 46.01 3.58
2569 2751 2.976589 TCATGCAAGATGTGTGACGAT 58.023 42.857 0.00 0.00 0.00 3.73
2653 2835 4.148825 GCTGGAGGGTGCGTCGAT 62.149 66.667 0.00 0.00 0.00 3.59
2654 2836 2.105128 CTGGAGGGTGCGTCGATC 59.895 66.667 0.00 0.00 0.00 3.69
2656 2838 1.949847 CTGGAGGGTGCGTCGATCTT 61.950 60.000 0.00 0.00 0.00 2.40
2659 2841 0.108804 GAGGGTGCGTCGATCTTGAA 60.109 55.000 0.00 0.00 0.00 2.69
2665 2847 2.475111 GTGCGTCGATCTTGAACTGAAA 59.525 45.455 0.00 0.00 0.00 2.69
2668 2850 4.213270 TGCGTCGATCTTGAACTGAAATTT 59.787 37.500 0.00 0.00 0.00 1.82
2680 2862 4.336889 ACTGAAATTTGACGAGGACTCA 57.663 40.909 0.00 0.00 0.00 3.41
2683 2865 4.065088 TGAAATTTGACGAGGACTCAAGG 58.935 43.478 0.00 0.00 0.00 3.61
2684 2866 2.770164 ATTTGACGAGGACTCAAGGG 57.230 50.000 0.00 0.00 0.00 3.95
2686 2868 0.966920 TTGACGAGGACTCAAGGGTC 59.033 55.000 0.00 0.00 35.66 4.46
2779 2961 1.684734 GAACGACCTAGGCTGGGGA 60.685 63.158 21.86 0.00 0.00 4.81
2808 2990 4.467107 GAGAGGCTCCGAGGGGGT 62.467 72.222 11.71 0.00 37.00 4.95
2843 3025 3.646162 TCAGCTAGAAGGGTTTCTGAACA 59.354 43.478 0.00 0.00 43.41 3.18
2969 3162 3.331889 AGTGATTTTGGTGTGATCCCTCT 59.668 43.478 0.00 0.00 0.00 3.69
2986 3179 4.017037 TCCCTCTTGAGGATGTAGAGAAGT 60.017 45.833 17.55 0.00 38.09 3.01
2988 3181 4.036262 CCTCTTGAGGATGTAGAGAAGTCG 59.964 50.000 11.02 0.00 38.09 4.18
3111 3304 5.482006 TCATTGTCTAATGCTATGATCGGG 58.518 41.667 0.00 0.00 42.71 5.14
3119 3313 7.387948 GTCTAATGCTATGATCGGGTTTGTTAT 59.612 37.037 0.00 0.00 0.00 1.89
3179 3374 5.405269 TGTGATACACGTTCAGAAACAGATG 59.595 40.000 0.00 0.00 37.14 2.90
3196 3391 5.830912 ACAGATGTGTGTACCATTTTTGTG 58.169 37.500 0.00 0.00 34.75 3.33
3223 3422 4.536765 AGTCAACCTGAAACTGAAATGGT 58.463 39.130 0.00 0.00 0.00 3.55
3226 3425 5.010012 GTCAACCTGAAACTGAAATGGTGAT 59.990 40.000 0.00 0.00 0.00 3.06
3228 3427 3.828451 ACCTGAAACTGAAATGGTGATGG 59.172 43.478 0.00 0.00 0.00 3.51
3229 3428 3.194116 CCTGAAACTGAAATGGTGATGGG 59.806 47.826 0.00 0.00 0.00 4.00
3230 3429 3.828451 CTGAAACTGAAATGGTGATGGGT 59.172 43.478 0.00 0.00 0.00 4.51
3231 3430 4.222336 TGAAACTGAAATGGTGATGGGTT 58.778 39.130 0.00 0.00 0.00 4.11
3232 3431 5.389520 TGAAACTGAAATGGTGATGGGTTA 58.610 37.500 0.00 0.00 0.00 2.85
3233 3432 5.476599 TGAAACTGAAATGGTGATGGGTTAG 59.523 40.000 0.00 0.00 0.00 2.34
3238 3439 0.998928 ATGGTGATGGGTTAGCCACA 59.001 50.000 4.87 3.44 36.17 4.17
3274 3475 4.077300 ACACGCATGATCCATTACATCT 57.923 40.909 0.00 0.00 0.00 2.90
3275 3476 4.060900 ACACGCATGATCCATTACATCTC 58.939 43.478 0.00 0.00 0.00 2.75
3276 3477 4.060205 CACGCATGATCCATTACATCTCA 58.940 43.478 0.00 0.00 0.00 3.27
3280 3482 5.561532 CGCATGATCCATTACATCTCAAACC 60.562 44.000 0.00 0.00 0.00 3.27
3295 3497 9.131791 ACATCTCAAACCTTTTTACATGTAGTT 57.868 29.630 5.56 3.81 0.00 2.24
3315 3519 9.727859 TGTAGTTACTACAAATTTGCCATAGAA 57.272 29.630 21.26 2.87 42.94 2.10
3359 3564 3.562343 ATGTCATCTGCAGCAGAATCT 57.438 42.857 28.78 10.30 44.04 2.40
3376 3581 8.270744 AGCAGAATCTACTGGAAATTACAGAAT 58.729 33.333 12.90 0.00 39.24 2.40
3377 3582 8.897752 GCAGAATCTACTGGAAATTACAGAATT 58.102 33.333 12.90 8.32 39.24 2.17
3494 3702 3.003275 CCTGCGAAGTTCTTTTTACAGCA 59.997 43.478 0.56 0.00 0.00 4.41
3614 3822 2.670148 GGCCCACTCCACCTTCGAT 61.670 63.158 0.00 0.00 0.00 3.59
3740 3948 2.640302 GCTGAGCTGGTCACGAGGA 61.640 63.158 5.28 0.00 0.00 3.71
3815 4023 4.142045 TGCTCCCTGATCAGCACT 57.858 55.556 17.76 0.00 40.80 4.40
3852 4060 2.498892 GCAAGTCGCAGCTTGTTTG 58.501 52.632 15.68 0.00 45.47 2.93
3866 4074 3.119708 GCTTGTTTGATTAGCACTGGGAG 60.120 47.826 0.00 0.00 35.05 4.30
3872 4080 2.906389 TGATTAGCACTGGGAGTTGAGT 59.094 45.455 0.00 0.00 0.00 3.41
3898 4106 6.113411 ACTATGGTAGCACAACAGAAATACC 58.887 40.000 0.00 0.00 34.54 2.73
3925 4133 4.759782 AGGTGGAATGATTCGTCAGTTAG 58.240 43.478 0.00 0.00 0.00 2.34
3931 4139 6.313658 TGGAATGATTCGTCAGTTAGTTCATG 59.686 38.462 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 5.534407 TGTCGTGAAACTTGAAGCTACATA 58.466 37.500 0.00 0.00 31.75 2.29
88 89 4.377021 TGTCGTGAAACTTGAAGCTACAT 58.623 39.130 0.00 0.00 31.75 2.29
229 235 2.275318 CGCCTTGCTTAGAAGGAGAAG 58.725 52.381 12.42 0.00 44.87 2.85
230 236 1.676014 GCGCCTTGCTTAGAAGGAGAA 60.676 52.381 14.41 0.00 44.87 2.87
231 237 0.108138 GCGCCTTGCTTAGAAGGAGA 60.108 55.000 14.41 0.00 44.87 3.71
232 238 2.388347 GCGCCTTGCTTAGAAGGAG 58.612 57.895 12.42 10.55 44.87 3.69
233 239 4.617875 GCGCCTTGCTTAGAAGGA 57.382 55.556 12.42 0.00 44.87 3.36
240 246 7.278868 GATATGTTTATCTATAGCGCCTTGCTT 59.721 37.037 2.29 0.00 41.70 3.91
241 247 6.758886 GATATGTTTATCTATAGCGCCTTGCT 59.241 38.462 2.29 0.00 42.88 3.91
242 248 6.291849 CGATATGTTTATCTATAGCGCCTTGC 60.292 42.308 2.29 0.00 36.95 4.01
243 249 6.752351 ACGATATGTTTATCTATAGCGCCTTG 59.248 38.462 2.29 0.00 40.99 3.61
244 250 6.864342 ACGATATGTTTATCTATAGCGCCTT 58.136 36.000 2.29 0.00 40.99 4.35
245 251 6.452494 ACGATATGTTTATCTATAGCGCCT 57.548 37.500 2.29 0.00 40.99 5.52
259 265 6.671614 TCCTCGCAAATAAAACGATATGTT 57.328 33.333 0.00 0.00 44.59 2.71
260 266 6.260050 ACATCCTCGCAAATAAAACGATATGT 59.740 34.615 0.00 0.00 37.43 2.29
261 267 6.658831 ACATCCTCGCAAATAAAACGATATG 58.341 36.000 0.00 0.00 36.22 1.78
262 268 6.861065 ACATCCTCGCAAATAAAACGATAT 57.139 33.333 0.00 0.00 34.94 1.63
263 269 6.671614 AACATCCTCGCAAATAAAACGATA 57.328 33.333 0.00 0.00 34.94 2.92
264 270 5.560966 AACATCCTCGCAAATAAAACGAT 57.439 34.783 0.00 0.00 34.94 3.73
265 271 5.049336 TGAAACATCCTCGCAAATAAAACGA 60.049 36.000 0.00 0.00 0.00 3.85
266 272 5.150683 TGAAACATCCTCGCAAATAAAACG 58.849 37.500 0.00 0.00 0.00 3.60
267 273 6.378582 TCTGAAACATCCTCGCAAATAAAAC 58.621 36.000 0.00 0.00 0.00 2.43
268 274 6.567687 TCTGAAACATCCTCGCAAATAAAA 57.432 33.333 0.00 0.00 0.00 1.52
269 275 6.567687 TTCTGAAACATCCTCGCAAATAAA 57.432 33.333 0.00 0.00 0.00 1.40
270 276 6.567687 TTTCTGAAACATCCTCGCAAATAA 57.432 33.333 0.00 0.00 0.00 1.40
271 277 6.374053 TGATTTCTGAAACATCCTCGCAAATA 59.626 34.615 4.73 0.00 0.00 1.40
272 278 5.183713 TGATTTCTGAAACATCCTCGCAAAT 59.816 36.000 4.73 0.00 0.00 2.32
273 279 4.518590 TGATTTCTGAAACATCCTCGCAAA 59.481 37.500 4.73 0.00 0.00 3.68
274 280 4.071423 TGATTTCTGAAACATCCTCGCAA 58.929 39.130 4.73 0.00 0.00 4.85
275 281 3.673902 TGATTTCTGAAACATCCTCGCA 58.326 40.909 4.73 0.00 0.00 5.10
276 282 4.889832 ATGATTTCTGAAACATCCTCGC 57.110 40.909 4.73 0.00 0.00 5.03
277 283 6.093219 AGTCAATGATTTCTGAAACATCCTCG 59.907 38.462 4.73 2.95 0.00 4.63
278 284 7.388460 AGTCAATGATTTCTGAAACATCCTC 57.612 36.000 4.73 0.00 0.00 3.71
279 285 7.771927 AAGTCAATGATTTCTGAAACATCCT 57.228 32.000 4.73 6.05 0.00 3.24
280 286 8.822652 AAAAGTCAATGATTTCTGAAACATCC 57.177 30.769 4.73 4.31 0.00 3.51
314 320 9.411189 TCACCTAACCAAATAGTACTTGTTTTT 57.589 29.630 0.00 0.00 0.00 1.94
315 321 8.983702 TCACCTAACCAAATAGTACTTGTTTT 57.016 30.769 0.00 0.00 0.00 2.43
316 322 9.582648 AATCACCTAACCAAATAGTACTTGTTT 57.417 29.630 0.00 0.10 0.00 2.83
317 323 9.582648 AAATCACCTAACCAAATAGTACTTGTT 57.417 29.630 0.00 0.55 0.00 2.83
318 324 9.010029 CAAATCACCTAACCAAATAGTACTTGT 57.990 33.333 0.00 0.00 0.00 3.16
319 325 9.010029 ACAAATCACCTAACCAAATAGTACTTG 57.990 33.333 0.00 0.00 0.00 3.16
320 326 9.582648 AACAAATCACCTAACCAAATAGTACTT 57.417 29.630 0.00 0.00 0.00 2.24
324 330 8.520351 GCTTAACAAATCACCTAACCAAATAGT 58.480 33.333 0.00 0.00 0.00 2.12
325 331 8.739972 AGCTTAACAAATCACCTAACCAAATAG 58.260 33.333 0.00 0.00 0.00 1.73
326 332 8.644374 AGCTTAACAAATCACCTAACCAAATA 57.356 30.769 0.00 0.00 0.00 1.40
327 333 7.539034 AGCTTAACAAATCACCTAACCAAAT 57.461 32.000 0.00 0.00 0.00 2.32
328 334 6.969993 AGCTTAACAAATCACCTAACCAAA 57.030 33.333 0.00 0.00 0.00 3.28
329 335 6.969993 AAGCTTAACAAATCACCTAACCAA 57.030 33.333 0.00 0.00 0.00 3.67
330 336 6.547880 TGAAAGCTTAACAAATCACCTAACCA 59.452 34.615 0.00 0.00 0.00 3.67
331 337 6.861572 GTGAAAGCTTAACAAATCACCTAACC 59.138 38.462 13.43 0.00 32.96 2.85
332 338 7.591426 CAGTGAAAGCTTAACAAATCACCTAAC 59.409 37.037 18.55 0.00 38.29 2.34
333 339 7.500892 TCAGTGAAAGCTTAACAAATCACCTAA 59.499 33.333 18.55 6.27 38.29 2.69
334 340 6.995686 TCAGTGAAAGCTTAACAAATCACCTA 59.004 34.615 18.55 8.19 38.29 3.08
335 341 5.827797 TCAGTGAAAGCTTAACAAATCACCT 59.172 36.000 18.55 7.56 38.29 4.00
336 342 6.072112 TCAGTGAAAGCTTAACAAATCACC 57.928 37.500 18.55 5.86 38.29 4.02
337 343 7.985634 TTTCAGTGAAAGCTTAACAAATCAC 57.014 32.000 14.35 15.71 37.91 3.06
338 344 9.897744 CTATTTCAGTGAAAGCTTAACAAATCA 57.102 29.630 22.03 0.00 34.92 2.57
339 345 8.854312 GCTATTTCAGTGAAAGCTTAACAAATC 58.146 33.333 22.03 0.00 34.92 2.17
340 346 8.579863 AGCTATTTCAGTGAAAGCTTAACAAAT 58.420 29.630 21.32 7.40 31.95 2.32
341 347 7.862372 CAGCTATTTCAGTGAAAGCTTAACAAA 59.138 33.333 23.50 0.00 33.06 2.83
342 348 7.013274 ACAGCTATTTCAGTGAAAGCTTAACAA 59.987 33.333 23.50 0.55 33.06 2.83
343 349 6.486657 ACAGCTATTTCAGTGAAAGCTTAACA 59.513 34.615 23.50 0.13 33.06 2.41
344 350 6.903419 ACAGCTATTTCAGTGAAAGCTTAAC 58.097 36.000 23.50 8.94 33.06 2.01
345 351 6.936900 AGACAGCTATTTCAGTGAAAGCTTAA 59.063 34.615 23.50 2.60 33.06 1.85
346 352 6.467677 AGACAGCTATTTCAGTGAAAGCTTA 58.532 36.000 23.50 11.75 33.06 3.09
347 353 5.312079 AGACAGCTATTTCAGTGAAAGCTT 58.688 37.500 23.50 16.64 33.06 3.74
348 354 4.904241 AGACAGCTATTTCAGTGAAAGCT 58.096 39.130 21.32 21.32 34.78 3.74
349 355 4.692625 TGAGACAGCTATTTCAGTGAAAGC 59.307 41.667 22.03 19.94 34.92 3.51
350 356 6.981762 ATGAGACAGCTATTTCAGTGAAAG 57.018 37.500 22.03 11.64 34.92 2.62
351 357 9.755804 CTATATGAGACAGCTATTTCAGTGAAA 57.244 33.333 20.14 20.14 35.94 2.69
352 358 9.136323 TCTATATGAGACAGCTATTTCAGTGAA 57.864 33.333 0.08 0.08 0.00 3.18
353 359 8.697507 TCTATATGAGACAGCTATTTCAGTGA 57.302 34.615 0.00 0.00 0.00 3.41
354 360 9.755804 TTTCTATATGAGACAGCTATTTCAGTG 57.244 33.333 0.00 0.00 32.31 3.66
379 385 9.434420 TCACTTGAAAAACAGATTCACATTTTT 57.566 25.926 0.00 0.00 36.57 1.94
380 386 9.434420 TTCACTTGAAAAACAGATTCACATTTT 57.566 25.926 0.00 0.00 36.57 1.82
381 387 9.603921 ATTCACTTGAAAAACAGATTCACATTT 57.396 25.926 0.00 0.00 36.57 2.32
382 388 9.603921 AATTCACTTGAAAAACAGATTCACATT 57.396 25.926 0.00 0.00 36.57 2.71
383 389 9.252962 GAATTCACTTGAAAAACAGATTCACAT 57.747 29.630 0.00 0.00 36.57 3.21
384 390 8.249638 TGAATTCACTTGAAAAACAGATTCACA 58.750 29.630 3.38 0.00 36.57 3.58
385 391 8.633075 TGAATTCACTTGAAAAACAGATTCAC 57.367 30.769 3.38 0.00 36.57 3.18
386 392 8.685427 TCTGAATTCACTTGAAAAACAGATTCA 58.315 29.630 3.38 9.92 37.03 2.57
387 393 9.520204 TTCTGAATTCACTTGAAAAACAGATTC 57.480 29.630 3.38 8.54 39.10 2.52
406 412 9.985730 TGCTGAAAAGAAAAACATATTCTGAAT 57.014 25.926 8.14 8.14 37.22 2.57
407 413 9.814899 TTGCTGAAAAGAAAAACATATTCTGAA 57.185 25.926 0.00 0.00 37.22 3.02
408 414 9.814899 TTTGCTGAAAAGAAAAACATATTCTGA 57.185 25.926 0.00 0.00 37.22 3.27
412 418 9.558396 TGGATTTGCTGAAAAGAAAAACATATT 57.442 25.926 0.00 0.00 0.00 1.28
413 419 9.558396 TTGGATTTGCTGAAAAGAAAAACATAT 57.442 25.926 0.00 0.00 0.00 1.78
414 420 8.954950 TTGGATTTGCTGAAAAGAAAAACATA 57.045 26.923 0.00 0.00 0.00 2.29
415 421 7.862512 TTGGATTTGCTGAAAAGAAAAACAT 57.137 28.000 0.00 0.00 0.00 2.71
416 422 7.678947 TTTGGATTTGCTGAAAAGAAAAACA 57.321 28.000 0.00 0.00 0.00 2.83
420 426 9.558396 ACATATTTTGGATTTGCTGAAAAGAAA 57.442 25.926 0.00 0.00 0.00 2.52
421 427 9.206870 GACATATTTTGGATTTGCTGAAAAGAA 57.793 29.630 0.00 0.00 0.00 2.52
422 428 7.818930 GGACATATTTTGGATTTGCTGAAAAGA 59.181 33.333 0.00 0.00 0.00 2.52
423 429 7.820872 AGGACATATTTTGGATTTGCTGAAAAG 59.179 33.333 0.00 0.00 0.00 2.27
424 430 7.678837 AGGACATATTTTGGATTTGCTGAAAA 58.321 30.769 0.00 0.00 0.00 2.29
425 431 7.243604 AGGACATATTTTGGATTTGCTGAAA 57.756 32.000 0.00 0.00 0.00 2.69
426 432 6.855763 AGGACATATTTTGGATTTGCTGAA 57.144 33.333 0.00 0.00 0.00 3.02
427 433 6.039717 GCTAGGACATATTTTGGATTTGCTGA 59.960 38.462 0.00 0.00 0.00 4.26
428 434 6.211515 GCTAGGACATATTTTGGATTTGCTG 58.788 40.000 0.00 0.00 0.00 4.41
429 435 5.302823 GGCTAGGACATATTTTGGATTTGCT 59.697 40.000 0.00 0.00 0.00 3.91
430 436 5.509670 GGGCTAGGACATATTTTGGATTTGC 60.510 44.000 0.00 0.00 0.00 3.68
431 437 5.598005 TGGGCTAGGACATATTTTGGATTTG 59.402 40.000 0.00 0.00 0.00 2.32
432 438 5.776358 TGGGCTAGGACATATTTTGGATTT 58.224 37.500 0.00 0.00 0.00 2.17
433 439 5.388654 CTGGGCTAGGACATATTTTGGATT 58.611 41.667 0.00 0.00 0.00 3.01
434 440 4.990526 CTGGGCTAGGACATATTTTGGAT 58.009 43.478 0.00 0.00 0.00 3.41
435 441 4.437682 CTGGGCTAGGACATATTTTGGA 57.562 45.455 0.00 0.00 0.00 3.53
447 453 4.846940 AGACTTTTATATCCCTGGGCTAGG 59.153 45.833 10.44 10.44 46.88 3.02
448 454 6.271159 AGAAGACTTTTATATCCCTGGGCTAG 59.729 42.308 8.22 0.00 0.00 3.42
449 455 6.151049 AGAAGACTTTTATATCCCTGGGCTA 58.849 40.000 8.22 2.59 0.00 3.93
450 456 4.978388 AGAAGACTTTTATATCCCTGGGCT 59.022 41.667 8.22 0.00 0.00 5.19
451 457 5.311844 AGAAGACTTTTATATCCCTGGGC 57.688 43.478 8.22 0.00 0.00 5.36
452 458 6.900194 TCAAGAAGACTTTTATATCCCTGGG 58.100 40.000 6.33 6.33 33.70 4.45
453 459 7.995488 ACATCAAGAAGACTTTTATATCCCTGG 59.005 37.037 0.00 0.00 33.70 4.45
454 460 8.970859 ACATCAAGAAGACTTTTATATCCCTG 57.029 34.615 0.00 0.00 33.70 4.45
455 461 9.401058 CAACATCAAGAAGACTTTTATATCCCT 57.599 33.333 0.00 0.00 33.70 4.20
456 462 9.396022 TCAACATCAAGAAGACTTTTATATCCC 57.604 33.333 0.00 0.00 33.70 3.85
460 466 8.730680 GGCTTCAACATCAAGAAGACTTTTATA 58.269 33.333 6.37 0.00 44.62 0.98
461 467 7.309438 GGGCTTCAACATCAAGAAGACTTTTAT 60.309 37.037 7.83 0.00 46.67 1.40
462 468 6.016276 GGGCTTCAACATCAAGAAGACTTTTA 60.016 38.462 7.83 0.00 46.67 1.52
463 469 5.221322 GGGCTTCAACATCAAGAAGACTTTT 60.221 40.000 7.83 0.00 46.67 2.27
464 470 4.279420 GGGCTTCAACATCAAGAAGACTTT 59.721 41.667 7.83 0.00 46.67 2.66
465 471 3.823304 GGGCTTCAACATCAAGAAGACTT 59.177 43.478 7.83 0.00 46.67 3.01
466 472 3.181440 TGGGCTTCAACATCAAGAAGACT 60.181 43.478 7.83 0.00 46.67 3.24
467 473 3.149196 TGGGCTTCAACATCAAGAAGAC 58.851 45.455 6.37 3.04 46.75 3.01
468 474 3.072915 TCTGGGCTTCAACATCAAGAAGA 59.927 43.478 6.37 0.00 42.95 2.87
469 475 3.190118 GTCTGGGCTTCAACATCAAGAAG 59.810 47.826 0.00 0.00 43.12 2.85
470 476 3.149196 GTCTGGGCTTCAACATCAAGAA 58.851 45.455 0.00 0.00 0.00 2.52
471 477 2.553028 GGTCTGGGCTTCAACATCAAGA 60.553 50.000 0.00 0.00 0.00 3.02
472 478 1.815003 GGTCTGGGCTTCAACATCAAG 59.185 52.381 0.00 0.00 0.00 3.02
473 479 1.881925 CGGTCTGGGCTTCAACATCAA 60.882 52.381 0.00 0.00 0.00 2.57
474 480 0.321564 CGGTCTGGGCTTCAACATCA 60.322 55.000 0.00 0.00 0.00 3.07
475 481 1.026718 CCGGTCTGGGCTTCAACATC 61.027 60.000 0.00 0.00 0.00 3.06
476 482 1.002134 CCGGTCTGGGCTTCAACAT 60.002 57.895 0.00 0.00 0.00 2.71
477 483 2.429930 CCGGTCTGGGCTTCAACA 59.570 61.111 0.00 0.00 0.00 3.33
491 497 4.344474 GAGATACGAGCGGGCCGG 62.344 72.222 29.48 13.97 0.00 6.13
492 498 4.685026 CGAGATACGAGCGGGCCG 62.685 72.222 24.35 24.35 45.77 6.13
493 499 4.344474 CCGAGATACGAGCGGGCC 62.344 72.222 0.00 0.00 45.77 5.80
499 505 2.351336 AAAGGCCGCCGAGATACGAG 62.351 60.000 3.05 0.00 45.77 4.18
500 506 2.345880 GAAAGGCCGCCGAGATACGA 62.346 60.000 3.05 0.00 45.77 3.43
501 507 1.949631 GAAAGGCCGCCGAGATACG 60.950 63.158 3.05 0.00 42.18 3.06
502 508 0.461339 TTGAAAGGCCGCCGAGATAC 60.461 55.000 3.05 0.00 0.00 2.24
503 509 0.179084 CTTGAAAGGCCGCCGAGATA 60.179 55.000 3.05 0.00 0.00 1.98
504 510 1.450312 CTTGAAAGGCCGCCGAGAT 60.450 57.895 3.05 0.00 0.00 2.75
505 511 2.047274 CTTGAAAGGCCGCCGAGA 60.047 61.111 3.05 0.00 0.00 4.04
506 512 3.127533 CCTTGAAAGGCCGCCGAG 61.128 66.667 3.05 0.00 39.76 4.63
515 521 7.442666 AGACTAGTCTAAAAACTGCCTTGAAAG 59.557 37.037 24.04 0.00 38.35 2.62
516 522 7.280356 AGACTAGTCTAAAAACTGCCTTGAAA 58.720 34.615 24.04 0.00 38.35 2.69
517 523 6.827727 AGACTAGTCTAAAAACTGCCTTGAA 58.172 36.000 24.04 0.00 38.35 2.69
518 524 6.420913 AGACTAGTCTAAAAACTGCCTTGA 57.579 37.500 24.04 0.00 38.35 3.02
519 525 6.706270 TGAAGACTAGTCTAAAAACTGCCTTG 59.294 38.462 25.42 0.00 39.39 3.61
520 526 6.706716 GTGAAGACTAGTCTAAAAACTGCCTT 59.293 38.462 25.42 5.42 39.39 4.35
521 527 6.183360 TGTGAAGACTAGTCTAAAAACTGCCT 60.183 38.462 25.42 5.96 39.39 4.75
522 528 5.989777 TGTGAAGACTAGTCTAAAAACTGCC 59.010 40.000 25.42 7.17 39.39 4.85
523 529 6.479001 TGTGTGAAGACTAGTCTAAAAACTGC 59.521 38.462 25.42 15.98 39.39 4.40
524 530 8.594881 ATGTGTGAAGACTAGTCTAAAAACTG 57.405 34.615 25.42 0.00 39.39 3.16
525 531 9.614792 AAATGTGTGAAGACTAGTCTAAAAACT 57.385 29.630 25.42 9.03 39.39 2.66
526 532 9.865484 GAAATGTGTGAAGACTAGTCTAAAAAC 57.135 33.333 25.42 19.93 39.39 2.43
527 533 9.832445 AGAAATGTGTGAAGACTAGTCTAAAAA 57.168 29.630 25.42 9.44 39.39 1.94
532 538 8.807118 TGATTAGAAATGTGTGAAGACTAGTCT 58.193 33.333 20.00 20.00 42.75 3.24
533 539 8.988064 TGATTAGAAATGTGTGAAGACTAGTC 57.012 34.615 15.41 15.41 0.00 2.59
534 540 9.429359 CTTGATTAGAAATGTGTGAAGACTAGT 57.571 33.333 0.00 0.00 0.00 2.57
535 541 9.645059 TCTTGATTAGAAATGTGTGAAGACTAG 57.355 33.333 0.00 0.00 0.00 2.57
537 543 8.944029 CATCTTGATTAGAAATGTGTGAAGACT 58.056 33.333 0.00 0.00 36.22 3.24
538 544 7.695618 GCATCTTGATTAGAAATGTGTGAAGAC 59.304 37.037 0.00 0.00 36.22 3.01
539 545 7.609146 AGCATCTTGATTAGAAATGTGTGAAGA 59.391 33.333 0.00 0.00 36.22 2.87
540 546 7.759465 AGCATCTTGATTAGAAATGTGTGAAG 58.241 34.615 0.00 0.00 36.22 3.02
541 547 7.692460 AGCATCTTGATTAGAAATGTGTGAA 57.308 32.000 0.00 0.00 36.22 3.18
542 548 7.280876 GGTAGCATCTTGATTAGAAATGTGTGA 59.719 37.037 0.00 0.00 36.22 3.58
543 549 7.281774 AGGTAGCATCTTGATTAGAAATGTGTG 59.718 37.037 0.00 0.00 36.22 3.82
544 550 7.341805 AGGTAGCATCTTGATTAGAAATGTGT 58.658 34.615 0.00 0.00 36.22 3.72
545 551 7.798596 AGGTAGCATCTTGATTAGAAATGTG 57.201 36.000 0.00 0.00 36.22 3.21
546 552 8.928448 TCTAGGTAGCATCTTGATTAGAAATGT 58.072 33.333 0.00 0.00 36.22 2.71
547 553 9.941325 ATCTAGGTAGCATCTTGATTAGAAATG 57.059 33.333 0.00 0.00 36.22 2.32
576 582 8.973378 TCTGAAAAATCGTCGCAAATAAAATTT 58.027 25.926 0.00 0.00 0.00 1.82
577 583 8.514136 TCTGAAAAATCGTCGCAAATAAAATT 57.486 26.923 0.00 0.00 0.00 1.82
589 595 6.766084 AGTCGATGATTTCTGAAAAATCGTC 58.234 36.000 29.93 26.98 43.80 4.20
590 596 6.727824 AGTCGATGATTTCTGAAAAATCGT 57.272 33.333 29.93 18.32 39.75 3.73
591 597 6.021939 GCAAGTCGATGATTTCTGAAAAATCG 60.022 38.462 27.92 27.92 39.96 3.34
607 613 3.773860 TGTGTTTGTTTGCAAGTCGAT 57.226 38.095 0.00 0.00 35.82 3.59
781 791 2.887889 CGCTTTTGGGTCACGCGAA 61.888 57.895 15.93 0.00 45.99 4.70
819 856 1.273606 GGCTTCCCTGCTTTTCCTTTC 59.726 52.381 0.00 0.00 0.00 2.62
1175 1222 3.055719 ATTGTTGTCCTGGCGCCG 61.056 61.111 23.90 16.52 0.00 6.46
1257 1312 1.557651 GTCATTCCTAACCGAGACGC 58.442 55.000 0.00 0.00 0.00 5.19
1295 1350 3.485431 CTCGGCAGTCGCAAGCAG 61.485 66.667 0.00 0.00 41.24 4.24
1298 1353 3.997064 CTCCCTCGGCAGTCGCAAG 62.997 68.421 0.00 0.00 41.24 4.01
1299 1354 4.069232 CTCCCTCGGCAGTCGCAA 62.069 66.667 0.00 0.00 41.24 4.85
1302 1357 4.504916 CAGCTCCCTCGGCAGTCG 62.505 72.222 0.00 0.00 40.90 4.18
1303 1358 1.965754 ATTCAGCTCCCTCGGCAGTC 61.966 60.000 0.00 0.00 0.00 3.51
1309 1366 2.176273 CGGCAATTCAGCTCCCTCG 61.176 63.158 0.00 0.00 34.17 4.63
1368 1425 3.111484 TGGCACCACTATCCACTATGAA 58.889 45.455 0.00 0.00 0.00 2.57
1415 1480 1.080298 GCAAGCAAAAGCGCATCCT 60.080 52.632 11.47 0.00 0.00 3.24
1417 1482 0.665369 AGTGCAAGCAAAAGCGCATC 60.665 50.000 11.47 0.00 43.35 3.91
1418 1483 0.942410 CAGTGCAAGCAAAAGCGCAT 60.942 50.000 11.47 0.00 43.35 4.73
1419 1484 1.589461 CAGTGCAAGCAAAAGCGCA 60.589 52.632 11.47 0.00 43.35 6.09
1420 1485 0.665369 ATCAGTGCAAGCAAAAGCGC 60.665 50.000 0.00 0.00 41.35 5.92
1422 1487 8.295288 AGATATATAATCAGTGCAAGCAAAAGC 58.705 33.333 0.00 0.00 0.00 3.51
1423 1488 9.608617 CAGATATATAATCAGTGCAAGCAAAAG 57.391 33.333 0.00 0.00 0.00 2.27
1428 1493 5.578336 TCGCAGATATATAATCAGTGCAAGC 59.422 40.000 0.00 0.00 0.00 4.01
1429 1494 7.543520 TCTTCGCAGATATATAATCAGTGCAAG 59.456 37.037 0.00 0.00 35.04 4.01
1430 1495 7.378181 TCTTCGCAGATATATAATCAGTGCAA 58.622 34.615 0.00 0.00 35.04 4.08
1431 1496 6.924111 TCTTCGCAGATATATAATCAGTGCA 58.076 36.000 0.00 0.00 35.04 4.57
1432 1497 8.417780 AATCTTCGCAGATATATAATCAGTGC 57.582 34.615 0.00 0.00 39.00 4.40
1471 1555 1.679139 TCAGACAAGTTTGTGCAGGG 58.321 50.000 1.62 0.00 42.43 4.45
1526 1612 5.520376 AAGAAACTAGCAGCAAACAACAT 57.480 34.783 0.00 0.00 0.00 2.71
1527 1613 4.981806 AAGAAACTAGCAGCAAACAACA 57.018 36.364 0.00 0.00 0.00 3.33
1528 1614 4.912187 GCTAAGAAACTAGCAGCAAACAAC 59.088 41.667 0.00 0.00 43.25 3.32
1606 1695 1.828660 AGTGGGTATCTCGAGCCCG 60.829 63.158 18.39 0.00 45.19 6.13
1622 1711 5.012148 ACAGGTGTATGCTAGAAAAGACAGT 59.988 40.000 0.00 0.00 0.00 3.55
1642 1731 1.933115 GCCGCCACAATGGTTACAGG 61.933 60.000 0.00 0.00 40.46 4.00
1673 1768 4.549458 CTGTGCTACCAATTGAAAACCAG 58.451 43.478 7.12 2.19 0.00 4.00
1711 1808 4.846779 ACATGCGTGTGTTTAAAGGAAT 57.153 36.364 11.65 0.00 37.14 3.01
1724 1821 2.282555 CAGAGGATACGAAACATGCGTG 59.717 50.000 3.82 3.82 42.62 5.34
1726 1823 2.809446 TCAGAGGATACGAAACATGCG 58.191 47.619 0.00 0.00 46.39 4.73
1735 1832 9.655769 CAAATTTACATGAAATCAGAGGATACG 57.344 33.333 0.00 0.00 38.17 3.06
1756 1931 5.126384 TGGTTTTCTTGTCGTCTTCCAAATT 59.874 36.000 0.00 0.00 0.00 1.82
1816 1992 5.512753 AGATGTCTGTCTGCAGTATACAG 57.487 43.478 22.05 22.05 43.05 2.74
1867 2043 1.839354 TCCCTCAGCTGCATTATGTCA 59.161 47.619 9.47 0.00 0.00 3.58
1891 2067 2.297597 CACCTTCTCGACCTTCTCTTGT 59.702 50.000 0.00 0.00 0.00 3.16
1965 2141 1.201429 ATTGACGAGGCCCTTGACCT 61.201 55.000 4.57 0.00 41.41 3.85
2005 2181 0.385390 CCGTGCCTTCTTTGCTGTTT 59.615 50.000 0.00 0.00 0.00 2.83
2021 2197 3.305471 GCTTCTGAGTTGTCTAGTTCCGT 60.305 47.826 0.00 0.00 0.00 4.69
2038 2214 3.428532 ACTGATGCCAGAATTTGCTTCT 58.571 40.909 0.00 0.00 45.34 2.85
2098 2274 0.612229 CAAGCTCTGCCAGGAGAGAA 59.388 55.000 19.10 0.00 41.95 2.87
2215 2394 3.286751 GGCACCGCAGCAACAGAA 61.287 61.111 0.00 0.00 35.83 3.02
2316 2495 3.441222 TCAGCAGGCAAAATGATAGTGTG 59.559 43.478 0.00 0.00 0.00 3.82
2321 2500 8.502105 CTGATATATCAGCAGGCAAAATGATA 57.498 34.615 25.81 4.19 46.63 2.15
2357 2536 0.542702 ACCCATTGCCCCTGTCAAAG 60.543 55.000 0.00 0.00 0.00 2.77
2358 2537 0.105246 AACCCATTGCCCCTGTCAAA 60.105 50.000 0.00 0.00 0.00 2.69
2441 2620 6.602179 CAAAGTTCTGCGATTTCAGTATCAA 58.398 36.000 0.00 0.00 35.63 2.57
2451 2630 0.953727 TGCTGCAAAGTTCTGCGATT 59.046 45.000 0.00 0.00 45.74 3.34
2452 2631 1.131883 GATGCTGCAAAGTTCTGCGAT 59.868 47.619 6.36 0.00 45.74 4.58
2464 2643 3.421687 CTCCGCGAGAGATGCTGCA 62.422 63.158 8.23 4.13 46.50 4.41
2533 2715 2.579873 CATGAAATCTGCCCGAATCCT 58.420 47.619 0.00 0.00 0.00 3.24
2569 2751 2.833794 GCGGACATGGTCAGCTTTATA 58.166 47.619 13.04 0.00 46.84 0.98
2653 2835 5.236478 GTCCTCGTCAAATTTCAGTTCAAGA 59.764 40.000 0.00 0.00 0.00 3.02
2654 2836 5.237344 AGTCCTCGTCAAATTTCAGTTCAAG 59.763 40.000 0.00 0.00 0.00 3.02
2656 2838 4.703897 AGTCCTCGTCAAATTTCAGTTCA 58.296 39.130 0.00 0.00 0.00 3.18
2659 2841 4.336889 TGAGTCCTCGTCAAATTTCAGT 57.663 40.909 0.00 0.00 0.00 3.41
2665 2847 1.978580 ACCCTTGAGTCCTCGTCAAAT 59.021 47.619 0.00 0.00 33.56 2.32
2668 2850 1.241990 CGACCCTTGAGTCCTCGTCA 61.242 60.000 0.00 0.00 32.91 4.35
2808 2990 1.329913 TAGCTGAATCCGCTCTGGCA 61.330 55.000 1.62 0.00 38.86 4.92
2969 3162 3.444034 CCACGACTTCTCTACATCCTCAA 59.556 47.826 0.00 0.00 0.00 3.02
2986 3179 5.742063 TCTACTTTCTCTGATCTACCACGA 58.258 41.667 0.00 0.00 0.00 4.35
2988 3181 7.603651 TGTTTCTACTTTCTCTGATCTACCAC 58.396 38.462 0.00 0.00 0.00 4.16
3108 3301 0.446222 CCACTGCGATAACAAACCCG 59.554 55.000 0.00 0.00 0.00 5.28
3111 3304 3.889196 TGAACCACTGCGATAACAAAC 57.111 42.857 0.00 0.00 0.00 2.93
3119 3313 6.992123 AGAATAATGATAATGAACCACTGCGA 59.008 34.615 0.00 0.00 0.00 5.10
3196 3391 5.560966 TTCAGTTTCAGGTTGACTCAAAC 57.439 39.130 0.00 0.00 0.00 2.93
3226 3425 2.524306 CTTTTCCATGTGGCTAACCCA 58.476 47.619 0.00 0.00 42.79 4.51
3228 3427 1.892474 TGCTTTTCCATGTGGCTAACC 59.108 47.619 0.00 0.00 34.44 2.85
3229 3428 3.658757 TTGCTTTTCCATGTGGCTAAC 57.341 42.857 0.00 0.00 34.44 2.34
3230 3429 4.679373 TTTTGCTTTTCCATGTGGCTAA 57.321 36.364 0.00 0.00 34.44 3.09
3231 3430 4.679373 TTTTTGCTTTTCCATGTGGCTA 57.321 36.364 0.00 0.00 34.44 3.93
3232 3431 3.557228 TTTTTGCTTTTCCATGTGGCT 57.443 38.095 0.00 0.00 34.44 4.75
3256 3457 5.446709 GTTTGAGATGTAATGGATCATGCG 58.553 41.667 0.00 0.00 0.00 4.73
3257 3458 5.533903 AGGTTTGAGATGTAATGGATCATGC 59.466 40.000 0.00 0.00 0.00 4.06
3258 3459 7.578310 AAGGTTTGAGATGTAATGGATCATG 57.422 36.000 0.00 0.00 0.00 3.07
3259 3460 8.599624 AAAAGGTTTGAGATGTAATGGATCAT 57.400 30.769 0.00 0.00 0.00 2.45
3269 3470 8.691661 ACTACATGTAAAAAGGTTTGAGATGT 57.308 30.769 7.06 6.22 31.47 3.06
3303 3507 3.781965 AGGCCCAAATTTCTATGGCAAAT 59.218 39.130 15.51 0.00 43.96 2.32
3306 3510 2.548464 AGGCCCAAATTTCTATGGCA 57.452 45.000 15.51 0.00 43.96 4.92
3308 3512 5.183904 GCACTATAGGCCCAAATTTCTATGG 59.816 44.000 0.00 6.83 36.42 2.74
3310 3514 5.952387 TGCACTATAGGCCCAAATTTCTAT 58.048 37.500 0.00 0.00 0.00 1.98
3313 3517 4.021981 GGATGCACTATAGGCCCAAATTTC 60.022 45.833 0.00 0.00 0.00 2.17
3315 3519 3.500343 GGATGCACTATAGGCCCAAATT 58.500 45.455 0.00 0.00 0.00 1.82
3376 3581 6.263617 GTGTGTTGTAGTCAGGGGAAAATTAA 59.736 38.462 0.00 0.00 0.00 1.40
3377 3582 5.766174 GTGTGTTGTAGTCAGGGGAAAATTA 59.234 40.000 0.00 0.00 0.00 1.40
3378 3583 4.583073 GTGTGTTGTAGTCAGGGGAAAATT 59.417 41.667 0.00 0.00 0.00 1.82
3614 3822 1.806461 GACACACGAGGGAGCACTCA 61.806 60.000 0.17 0.00 37.34 3.41
3649 3857 1.737793 CCAACTGCGAGTACAATTCCC 59.262 52.381 0.00 0.00 0.00 3.97
3740 3948 3.132289 TCAACGAAGTCAACCTCTTCACT 59.868 43.478 0.00 0.00 45.00 3.41
3815 4023 1.208052 GCAGACATACCAGAAGGAGCA 59.792 52.381 0.00 0.00 38.69 4.26
3852 4060 3.618690 ACTCAACTCCCAGTGCTAATC 57.381 47.619 0.00 0.00 0.00 1.75
3866 4074 5.929992 TGTTGTGCTACCATAGTTACTCAAC 59.070 40.000 0.00 0.00 36.10 3.18
3872 4080 7.767198 GGTATTTCTGTTGTGCTACCATAGTTA 59.233 37.037 0.00 0.00 31.11 2.24
3898 4106 5.449812 CTGACGAATCATTCCACCTCTTGG 61.450 50.000 0.00 0.00 39.64 3.61
3917 4125 6.727824 ATTGTACAGCATGAACTAACTGAC 57.272 37.500 0.00 0.00 39.69 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.