Multiple sequence alignment - TraesCS7A01G537400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G537400 chr7A 100.000 2505 0 0 1 2505 714753060 714750556 0.000000e+00 4626.0
1 TraesCS7A01G537400 chr7A 87.372 293 12 7 2238 2505 611162496 611162788 1.870000e-81 313.0
2 TraesCS7A01G537400 chr7A 85.714 294 16 5 2237 2505 111502868 111503160 1.130000e-73 287.0
3 TraesCS7A01G537400 chr7A 89.143 175 14 4 2238 2411 175851714 175851884 1.950000e-51 213.0
4 TraesCS7A01G537400 chr7A 88.136 177 16 4 2238 2411 673070118 673070292 3.270000e-49 206.0
5 TraesCS7A01G537400 chr7A 83.333 114 19 0 1113 1226 721220729 721220842 3.410000e-19 106.0
6 TraesCS7A01G537400 chr7A 85.106 94 14 0 1112 1205 721220554 721220647 2.050000e-16 97.1
7 TraesCS7A01G537400 chr7D 88.784 1168 84 23 331 1457 620201894 620203055 0.000000e+00 1387.0
8 TraesCS7A01G537400 chr7D 96.067 661 25 1 1578 2238 611642633 611641974 0.000000e+00 1075.0
9 TraesCS7A01G537400 chr3A 93.759 673 30 4 1577 2238 745548862 745548191 0.000000e+00 1000.0
10 TraesCS7A01G537400 chr3A 93.855 179 9 2 2234 2411 159695424 159695601 4.110000e-68 268.0
11 TraesCS7A01G537400 chr7B 92.069 580 29 7 999 1574 716290408 716289842 0.000000e+00 800.0
12 TraesCS7A01G537400 chr7B 82.883 111 19 0 1116 1226 725155209 725155099 1.590000e-17 100.0
13 TraesCS7A01G537400 chr7B 81.197 117 22 0 1115 1231 682366204 682366088 7.380000e-16 95.3
14 TraesCS7A01G537400 chr3B 88.235 663 70 8 1576 2235 544794710 544795367 0.000000e+00 785.0
15 TraesCS7A01G537400 chr3B 87.640 178 18 1 2238 2411 557943595 557943418 1.170000e-48 204.0
16 TraesCS7A01G537400 chr2D 91.961 510 39 2 1727 2235 543528190 543528698 0.000000e+00 713.0
17 TraesCS7A01G537400 chr2D 75.600 250 42 12 1025 1263 605709937 605710178 3.410000e-19 106.0
18 TraesCS7A01G537400 chr5A 81.516 541 95 5 1576 2114 654172200 654172737 8.220000e-120 440.0
19 TraesCS7A01G537400 chr5A 89.630 270 8 10 2238 2505 371536248 371536499 2.400000e-85 326.0
20 TraesCS7A01G537400 chr5A 87.205 297 12 3 2234 2505 648046783 648046488 5.200000e-82 315.0
21 TraesCS7A01G537400 chr5A 86.111 252 10 2 2279 2505 135967732 135967983 5.350000e-62 248.0
22 TraesCS7A01G537400 chr5A 100.000 29 0 0 701 729 691402397 691402369 1.000000e-03 54.7
23 TraesCS7A01G537400 chr6A 87.713 293 11 2 2238 2505 444019075 444019367 4.020000e-83 318.0
24 TraesCS7A01G537400 chr6A 87.778 270 14 10 2238 2505 40821232 40820980 5.240000e-77 298.0
25 TraesCS7A01G537400 chr4A 87.031 293 12 3 2238 2505 367626246 367626537 8.700000e-80 307.0
26 TraesCS7A01G537400 chr2A 87.709 179 15 5 2237 2411 70271239 70271414 4.220000e-48 202.0
27 TraesCS7A01G537400 chr2A 86.525 141 13 6 2368 2505 360702486 360702349 1.550000e-32 150.0
28 TraesCS7A01G537400 chr2A 77.043 257 39 13 1016 1263 737046044 737046289 2.020000e-26 130.0
29 TraesCS7A01G537400 chr4B 87.429 175 20 2 2238 2411 419123936 419123763 1.520000e-47 200.0
30 TraesCS7A01G537400 chr4B 78.571 154 28 4 1108 1260 22266634 22266783 2.050000e-16 97.1
31 TraesCS7A01G537400 chr1A 87.571 177 15 4 2236 2411 574850498 574850668 5.470000e-47 198.0
32 TraesCS7A01G537400 chr2B 87.151 179 15 7 2235 2411 46647095 46647267 1.970000e-46 196.0
33 TraesCS7A01G537400 chr2B 76.800 250 39 12 1025 1263 736243756 736243997 3.380000e-24 122.0
34 TraesCS7A01G537400 chr6B 87.429 175 15 4 2238 2411 306605451 306605283 7.070000e-46 195.0
35 TraesCS7A01G537400 chrUn 82.883 111 19 0 1116 1226 213339291 213339181 1.590000e-17 100.0
36 TraesCS7A01G537400 chr3D 76.596 141 19 11 1045 1172 573263934 573263795 5.780000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G537400 chr7A 714750556 714753060 2504 True 4626 4626 100.000 1 2505 1 chr7A.!!$R1 2504
1 TraesCS7A01G537400 chr7D 620201894 620203055 1161 False 1387 1387 88.784 331 1457 1 chr7D.!!$F1 1126
2 TraesCS7A01G537400 chr7D 611641974 611642633 659 True 1075 1075 96.067 1578 2238 1 chr7D.!!$R1 660
3 TraesCS7A01G537400 chr3A 745548191 745548862 671 True 1000 1000 93.759 1577 2238 1 chr3A.!!$R1 661
4 TraesCS7A01G537400 chr7B 716289842 716290408 566 True 800 800 92.069 999 1574 1 chr7B.!!$R2 575
5 TraesCS7A01G537400 chr3B 544794710 544795367 657 False 785 785 88.235 1576 2235 1 chr3B.!!$F1 659
6 TraesCS7A01G537400 chr2D 543528190 543528698 508 False 713 713 91.961 1727 2235 1 chr2D.!!$F1 508
7 TraesCS7A01G537400 chr5A 654172200 654172737 537 False 440 440 81.516 1576 2114 1 chr5A.!!$F3 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 0.102300 CGGTGATGACGATGGCACTA 59.898 55.0 0.00 0.00 0.0 2.74 F
430 431 0.107456 ATGTGACGGGGATCATGAGC 59.893 55.0 1.26 1.26 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1108 1146 0.821711 CCTCGCTCCTCTCCCTGTAG 60.822 65.0 0.00 0.0 0.00 2.74 R
2426 2477 0.034574 ACTAATGGCGCATCACCCAA 60.035 50.0 10.83 0.0 34.25 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.927501 AGGTAGCCGAGAGACTGC 58.072 61.111 0.00 0.00 0.00 4.40
18 19 1.000771 AGGTAGCCGAGAGACTGCA 60.001 57.895 0.00 0.00 0.00 4.41
19 20 0.612174 AGGTAGCCGAGAGACTGCAA 60.612 55.000 0.00 0.00 0.00 4.08
20 21 0.458716 GGTAGCCGAGAGACTGCAAC 60.459 60.000 0.00 0.00 0.00 4.17
21 22 0.798771 GTAGCCGAGAGACTGCAACG 60.799 60.000 0.00 0.00 0.00 4.10
22 23 2.543687 TAGCCGAGAGACTGCAACGC 62.544 60.000 0.00 0.00 0.00 4.84
23 24 2.049156 CCGAGAGACTGCAACGCA 60.049 61.111 0.00 0.00 36.92 5.24
34 35 4.988598 CAACGCAGGTGGGACGCT 62.989 66.667 0.37 0.00 39.78 5.07
35 36 4.988598 AACGCAGGTGGGACGCTG 62.989 66.667 0.37 0.00 39.78 5.18
39 40 2.821366 CAGGTGGGACGCTGCATC 60.821 66.667 0.00 0.00 39.78 3.91
40 41 4.101448 AGGTGGGACGCTGCATCC 62.101 66.667 6.13 6.13 39.78 3.51
45 46 4.101448 GGACGCTGCATCCCAGGT 62.101 66.667 2.74 0.00 42.03 4.00
46 47 2.731571 GGACGCTGCATCCCAGGTA 61.732 63.158 2.74 0.00 42.03 3.08
47 48 1.227380 GACGCTGCATCCCAGGTAG 60.227 63.158 0.00 0.00 42.03 3.18
48 49 1.676678 GACGCTGCATCCCAGGTAGA 61.677 60.000 0.00 0.00 42.03 2.59
49 50 1.050988 ACGCTGCATCCCAGGTAGAT 61.051 55.000 0.00 0.00 42.03 1.98
50 51 0.602106 CGCTGCATCCCAGGTAGATG 60.602 60.000 0.00 2.07 43.31 2.90
54 55 3.713902 CATCCCAGGTAGATGCCAC 57.286 57.895 0.00 0.00 35.12 5.01
55 56 0.839277 CATCCCAGGTAGATGCCACA 59.161 55.000 0.00 0.00 35.12 4.17
56 57 1.135094 ATCCCAGGTAGATGCCACAG 58.865 55.000 0.00 0.00 0.00 3.66
57 58 0.252696 TCCCAGGTAGATGCCACAGT 60.253 55.000 0.00 0.00 0.00 3.55
58 59 0.107508 CCCAGGTAGATGCCACAGTG 60.108 60.000 0.00 0.00 0.00 3.66
59 60 0.107508 CCAGGTAGATGCCACAGTGG 60.108 60.000 16.16 16.16 41.55 4.00
76 77 3.181967 GCGCACACGGCTAGAGTG 61.182 66.667 0.30 14.67 43.04 3.51
77 78 2.566529 CGCACACGGCTAGAGTGA 59.433 61.111 20.79 0.00 42.86 3.41
78 79 1.801913 CGCACACGGCTAGAGTGAC 60.802 63.158 20.79 13.01 42.86 3.67
79 80 1.587054 GCACACGGCTAGAGTGACT 59.413 57.895 20.79 0.00 42.86 3.41
80 81 0.809385 GCACACGGCTAGAGTGACTA 59.191 55.000 20.79 0.00 42.86 2.59
81 82 1.467713 GCACACGGCTAGAGTGACTAC 60.468 57.143 20.79 7.27 42.86 2.73
82 83 1.085091 ACACGGCTAGAGTGACTACG 58.915 55.000 20.79 3.32 41.83 3.51
83 84 0.377554 CACGGCTAGAGTGACTACGG 59.622 60.000 11.85 0.00 41.83 4.02
84 85 1.355916 CGGCTAGAGTGACTACGGC 59.644 63.158 0.00 0.00 0.00 5.68
85 86 1.374343 CGGCTAGAGTGACTACGGCA 61.374 60.000 0.00 0.00 0.00 5.69
86 87 0.382515 GGCTAGAGTGACTACGGCAG 59.617 60.000 0.00 0.00 0.00 4.85
87 88 1.096416 GCTAGAGTGACTACGGCAGT 58.904 55.000 0.00 0.00 41.47 4.40
88 89 1.202200 GCTAGAGTGACTACGGCAGTG 60.202 57.143 0.00 0.00 37.72 3.66
89 90 1.402259 CTAGAGTGACTACGGCAGTGG 59.598 57.143 0.00 0.00 37.72 4.00
90 91 1.446272 GAGTGACTACGGCAGTGGC 60.446 63.158 6.62 6.62 37.72 5.01
99 100 3.127533 GGCAGTGGCGGTGATGAC 61.128 66.667 0.00 0.00 42.47 3.06
100 101 3.490759 GCAGTGGCGGTGATGACG 61.491 66.667 0.00 0.00 0.00 4.35
101 102 2.261361 CAGTGGCGGTGATGACGA 59.739 61.111 0.00 0.00 0.00 4.20
102 103 1.153568 CAGTGGCGGTGATGACGAT 60.154 57.895 0.00 0.00 0.00 3.73
103 104 1.153568 AGTGGCGGTGATGACGATG 60.154 57.895 0.00 0.00 0.00 3.84
104 105 2.173669 GTGGCGGTGATGACGATGG 61.174 63.158 0.00 0.00 0.00 3.51
105 106 3.272334 GGCGGTGATGACGATGGC 61.272 66.667 0.00 0.00 0.00 4.40
106 107 2.511373 GCGGTGATGACGATGGCA 60.511 61.111 0.00 0.00 0.00 4.92
107 108 2.813179 GCGGTGATGACGATGGCAC 61.813 63.158 0.00 0.00 0.00 5.01
108 109 1.153568 CGGTGATGACGATGGCACT 60.154 57.895 0.00 0.00 0.00 4.40
109 110 0.102300 CGGTGATGACGATGGCACTA 59.898 55.000 0.00 0.00 0.00 2.74
110 111 1.858091 GGTGATGACGATGGCACTAG 58.142 55.000 0.00 0.00 0.00 2.57
111 112 1.212616 GTGATGACGATGGCACTAGC 58.787 55.000 0.00 0.00 41.10 3.42
112 113 0.823460 TGATGACGATGGCACTAGCA 59.177 50.000 0.00 0.00 44.61 3.49
113 114 1.202452 TGATGACGATGGCACTAGCAG 60.202 52.381 0.00 0.00 44.61 4.24
114 115 0.826715 ATGACGATGGCACTAGCAGT 59.173 50.000 0.00 0.00 44.61 4.40
120 121 4.921834 GGCACTAGCAGTGTCCTC 57.078 61.111 14.87 2.26 44.65 3.71
121 122 1.153745 GGCACTAGCAGTGTCCTCG 60.154 63.158 14.87 0.00 44.65 4.63
122 123 1.595993 GGCACTAGCAGTGTCCTCGA 61.596 60.000 14.87 0.00 44.65 4.04
123 124 3.094224 GGCACTAGCAGTGTCCTCGAA 62.094 57.143 14.87 0.00 44.65 3.71
124 125 2.270275 CACTAGCAGTGTCCTCGAAG 57.730 55.000 7.80 0.00 41.19 3.79
125 126 1.135257 CACTAGCAGTGTCCTCGAAGG 60.135 57.143 7.80 0.00 41.19 3.46
126 127 1.271982 ACTAGCAGTGTCCTCGAAGGA 60.272 52.381 0.11 0.11 43.43 3.36
135 136 0.465705 TCCTCGAAGGACATGCATCC 59.534 55.000 0.00 0.00 40.06 3.51
136 137 0.533755 CCTCGAAGGACATGCATCCC 60.534 60.000 0.00 0.67 39.91 3.85
137 138 0.178767 CTCGAAGGACATGCATCCCA 59.821 55.000 15.00 0.00 39.91 4.37
138 139 0.178767 TCGAAGGACATGCATCCCAG 59.821 55.000 15.00 7.56 39.91 4.45
139 140 0.816825 CGAAGGACATGCATCCCAGG 60.817 60.000 15.00 0.00 39.91 4.45
140 141 0.257039 GAAGGACATGCATCCCAGGT 59.743 55.000 15.00 2.17 41.91 4.00
142 143 4.131376 GACATGCATCCCAGGTCG 57.869 61.111 0.00 0.00 44.17 4.79
143 144 1.221840 GACATGCATCCCAGGTCGT 59.778 57.895 0.00 0.00 44.17 4.34
144 145 0.811616 GACATGCATCCCAGGTCGTC 60.812 60.000 0.00 0.00 44.17 4.20
145 146 1.884464 CATGCATCCCAGGTCGTCG 60.884 63.158 0.00 0.00 0.00 5.12
146 147 2.359169 ATGCATCCCAGGTCGTCGT 61.359 57.895 0.00 0.00 0.00 4.34
147 148 2.202756 GCATCCCAGGTCGTCGTC 60.203 66.667 0.00 0.00 0.00 4.20
148 149 2.494918 CATCCCAGGTCGTCGTCC 59.505 66.667 0.00 0.00 0.00 4.79
149 150 2.036731 ATCCCAGGTCGTCGTCCA 59.963 61.111 11.13 0.00 0.00 4.02
150 151 2.052690 ATCCCAGGTCGTCGTCCAG 61.053 63.158 11.13 2.67 0.00 3.86
151 152 4.436998 CCCAGGTCGTCGTCCAGC 62.437 72.222 11.13 0.00 0.00 4.85
152 153 3.374402 CCAGGTCGTCGTCCAGCT 61.374 66.667 11.13 0.00 0.00 4.24
153 154 2.651361 CAGGTCGTCGTCCAGCTT 59.349 61.111 11.13 0.00 0.00 3.74
154 155 1.592400 CCAGGTCGTCGTCCAGCTTA 61.592 60.000 11.13 0.00 0.00 3.09
155 156 0.456221 CAGGTCGTCGTCCAGCTTAT 59.544 55.000 11.13 0.00 0.00 1.73
156 157 0.739561 AGGTCGTCGTCCAGCTTATC 59.260 55.000 11.13 0.00 0.00 1.75
157 158 0.248949 GGTCGTCGTCCAGCTTATCC 60.249 60.000 3.49 0.00 0.00 2.59
158 159 0.454600 GTCGTCGTCCAGCTTATCCA 59.545 55.000 0.00 0.00 0.00 3.41
159 160 1.135199 GTCGTCGTCCAGCTTATCCAA 60.135 52.381 0.00 0.00 0.00 3.53
160 161 1.754803 TCGTCGTCCAGCTTATCCAAT 59.245 47.619 0.00 0.00 0.00 3.16
161 162 2.953648 TCGTCGTCCAGCTTATCCAATA 59.046 45.455 0.00 0.00 0.00 1.90
162 163 3.004419 TCGTCGTCCAGCTTATCCAATAG 59.996 47.826 0.00 0.00 0.00 1.73
163 164 3.004419 CGTCGTCCAGCTTATCCAATAGA 59.996 47.826 0.00 0.00 0.00 1.98
164 165 4.321304 CGTCGTCCAGCTTATCCAATAGAT 60.321 45.833 0.00 0.00 39.15 1.98
165 166 5.542779 GTCGTCCAGCTTATCCAATAGATT 58.457 41.667 0.00 0.00 36.33 2.40
166 167 5.992217 GTCGTCCAGCTTATCCAATAGATTT 59.008 40.000 0.00 0.00 36.33 2.17
167 168 6.483640 GTCGTCCAGCTTATCCAATAGATTTT 59.516 38.462 0.00 0.00 36.33 1.82
168 169 6.483307 TCGTCCAGCTTATCCAATAGATTTTG 59.517 38.462 0.00 0.00 36.33 2.44
169 170 6.293626 CGTCCAGCTTATCCAATAGATTTTGG 60.294 42.308 0.00 0.00 46.28 3.28
170 171 6.547510 GTCCAGCTTATCCAATAGATTTTGGT 59.452 38.462 3.36 0.00 45.32 3.67
171 172 7.068716 GTCCAGCTTATCCAATAGATTTTGGTT 59.931 37.037 3.36 0.00 45.32 3.67
172 173 7.619302 TCCAGCTTATCCAATAGATTTTGGTTT 59.381 33.333 3.36 0.00 45.32 3.27
173 174 8.260114 CCAGCTTATCCAATAGATTTTGGTTTT 58.740 33.333 3.36 0.00 45.32 2.43
204 205 8.863872 AAGTTACTTCCATATAGTTTGCTTGT 57.136 30.769 0.00 0.00 0.00 3.16
205 206 8.268850 AGTTACTTCCATATAGTTTGCTTGTG 57.731 34.615 0.00 0.00 0.00 3.33
206 207 8.100791 AGTTACTTCCATATAGTTTGCTTGTGA 58.899 33.333 0.00 0.00 0.00 3.58
207 208 8.893727 GTTACTTCCATATAGTTTGCTTGTGAT 58.106 33.333 0.00 0.00 0.00 3.06
213 214 9.890629 TCCATATAGTTTGCTTGTGATATATCC 57.109 33.333 10.25 2.71 0.00 2.59
214 215 8.820933 CCATATAGTTTGCTTGTGATATATCCG 58.179 37.037 10.25 0.00 0.00 4.18
215 216 9.586435 CATATAGTTTGCTTGTGATATATCCGA 57.414 33.333 10.25 1.43 0.00 4.55
217 218 6.604735 AGTTTGCTTGTGATATATCCGAAC 57.395 37.500 10.25 9.74 0.00 3.95
218 219 6.349300 AGTTTGCTTGTGATATATCCGAACT 58.651 36.000 10.25 11.55 0.00 3.01
219 220 6.258727 AGTTTGCTTGTGATATATCCGAACTG 59.741 38.462 15.37 6.12 0.00 3.16
220 221 4.058124 TGCTTGTGATATATCCGAACTGC 58.942 43.478 10.25 10.34 0.00 4.40
221 222 4.058124 GCTTGTGATATATCCGAACTGCA 58.942 43.478 10.25 0.00 0.00 4.41
222 223 4.511454 GCTTGTGATATATCCGAACTGCAA 59.489 41.667 10.25 3.98 0.00 4.08
223 224 5.180117 GCTTGTGATATATCCGAACTGCAAT 59.820 40.000 10.25 0.00 0.00 3.56
224 225 6.368791 GCTTGTGATATATCCGAACTGCAATA 59.631 38.462 10.25 0.00 0.00 1.90
225 226 7.095229 GCTTGTGATATATCCGAACTGCAATAA 60.095 37.037 10.25 0.00 0.00 1.40
226 227 8.669946 TTGTGATATATCCGAACTGCAATAAA 57.330 30.769 10.25 0.00 0.00 1.40
227 228 8.669946 TGTGATATATCCGAACTGCAATAAAA 57.330 30.769 10.25 0.00 0.00 1.52
228 229 9.283768 TGTGATATATCCGAACTGCAATAAAAT 57.716 29.630 10.25 0.00 0.00 1.82
232 233 9.912634 ATATATCCGAACTGCAATAAAATTTGG 57.087 29.630 0.00 0.00 0.00 3.28
233 234 5.713792 TCCGAACTGCAATAAAATTTGGA 57.286 34.783 0.00 0.00 31.60 3.53
234 235 6.090483 TCCGAACTGCAATAAAATTTGGAA 57.910 33.333 0.00 0.00 31.21 3.53
235 236 6.696411 TCCGAACTGCAATAAAATTTGGAAT 58.304 32.000 0.00 0.00 31.21 3.01
236 237 7.158021 TCCGAACTGCAATAAAATTTGGAATT 58.842 30.769 0.00 0.00 31.21 2.17
237 238 7.659390 TCCGAACTGCAATAAAATTTGGAATTT 59.341 29.630 0.00 0.00 31.21 1.82
238 239 8.288913 CCGAACTGCAATAAAATTTGGAATTTT 58.711 29.630 13.82 13.82 35.62 1.82
264 265 8.539117 AATAGTTGAAAATAGGGGAGAAATGG 57.461 34.615 0.00 0.00 0.00 3.16
265 266 5.272402 AGTTGAAAATAGGGGAGAAATGGG 58.728 41.667 0.00 0.00 0.00 4.00
266 267 4.965283 TGAAAATAGGGGAGAAATGGGT 57.035 40.909 0.00 0.00 0.00 4.51
267 268 4.609301 TGAAAATAGGGGAGAAATGGGTG 58.391 43.478 0.00 0.00 0.00 4.61
268 269 4.293634 TGAAAATAGGGGAGAAATGGGTGA 59.706 41.667 0.00 0.00 0.00 4.02
269 270 5.043432 TGAAAATAGGGGAGAAATGGGTGAT 60.043 40.000 0.00 0.00 0.00 3.06
270 271 6.161348 TGAAAATAGGGGAGAAATGGGTGATA 59.839 38.462 0.00 0.00 0.00 2.15
271 272 5.850046 AATAGGGGAGAAATGGGTGATAG 57.150 43.478 0.00 0.00 0.00 2.08
272 273 1.777272 AGGGGAGAAATGGGTGATAGC 59.223 52.381 0.00 0.00 0.00 2.97
273 274 1.494721 GGGGAGAAATGGGTGATAGCA 59.505 52.381 0.00 0.00 0.00 3.49
274 275 2.108952 GGGGAGAAATGGGTGATAGCAT 59.891 50.000 0.00 0.00 0.00 3.79
275 276 3.437052 GGGGAGAAATGGGTGATAGCATT 60.437 47.826 0.00 0.00 0.00 3.56
276 277 4.218312 GGGAGAAATGGGTGATAGCATTT 58.782 43.478 0.00 0.00 0.00 2.32
277 278 4.038402 GGGAGAAATGGGTGATAGCATTTG 59.962 45.833 0.00 0.00 0.00 2.32
278 279 4.038402 GGAGAAATGGGTGATAGCATTTGG 59.962 45.833 0.00 0.00 0.00 3.28
279 280 4.613437 AGAAATGGGTGATAGCATTTGGT 58.387 39.130 0.00 0.00 0.00 3.67
280 281 4.403432 AGAAATGGGTGATAGCATTTGGTG 59.597 41.667 0.00 0.00 0.00 4.17
281 282 2.142356 TGGGTGATAGCATTTGGTGG 57.858 50.000 0.00 0.00 0.00 4.61
282 283 1.357420 TGGGTGATAGCATTTGGTGGT 59.643 47.619 0.00 0.00 42.23 4.16
283 284 2.225242 TGGGTGATAGCATTTGGTGGTT 60.225 45.455 0.00 0.00 39.69 3.67
284 285 3.010696 TGGGTGATAGCATTTGGTGGTTA 59.989 43.478 0.00 0.00 39.69 2.85
285 286 3.632145 GGGTGATAGCATTTGGTGGTTAG 59.368 47.826 0.00 0.00 39.69 2.34
286 287 3.632145 GGTGATAGCATTTGGTGGTTAGG 59.368 47.826 0.00 0.00 39.69 2.69
287 288 3.066760 GTGATAGCATTTGGTGGTTAGGC 59.933 47.826 0.00 0.00 39.69 3.93
288 289 2.889170 TAGCATTTGGTGGTTAGGCA 57.111 45.000 0.00 0.00 39.69 4.75
289 290 2.236489 AGCATTTGGTGGTTAGGCAT 57.764 45.000 0.00 0.00 34.12 4.40
290 291 2.102578 AGCATTTGGTGGTTAGGCATC 58.897 47.619 0.00 0.00 34.12 3.91
291 292 2.102578 GCATTTGGTGGTTAGGCATCT 58.897 47.619 0.00 0.00 0.00 2.90
292 293 3.053693 AGCATTTGGTGGTTAGGCATCTA 60.054 43.478 0.00 0.00 34.12 1.98
293 294 3.066760 GCATTTGGTGGTTAGGCATCTAC 59.933 47.826 0.00 0.00 0.00 2.59
294 295 4.526970 CATTTGGTGGTTAGGCATCTACT 58.473 43.478 0.00 0.00 0.00 2.57
295 296 3.627395 TTGGTGGTTAGGCATCTACTG 57.373 47.619 0.00 0.00 0.00 2.74
296 297 2.827755 TGGTGGTTAGGCATCTACTGA 58.172 47.619 0.00 0.00 0.00 3.41
297 298 2.500098 TGGTGGTTAGGCATCTACTGAC 59.500 50.000 0.00 0.00 0.00 3.51
298 299 2.158943 GGTGGTTAGGCATCTACTGACC 60.159 54.545 0.00 0.00 42.96 4.02
300 301 2.500098 TGGTTAGGCATCTACTGACCAC 59.500 50.000 5.14 0.00 45.99 4.16
301 302 2.500098 GGTTAGGCATCTACTGACCACA 59.500 50.000 0.00 0.00 42.40 4.17
302 303 3.522553 GTTAGGCATCTACTGACCACAC 58.477 50.000 0.00 0.00 30.62 3.82
303 304 1.644509 AGGCATCTACTGACCACACA 58.355 50.000 0.00 0.00 30.62 3.72
304 305 2.191400 AGGCATCTACTGACCACACAT 58.809 47.619 0.00 0.00 30.62 3.21
305 306 3.374764 AGGCATCTACTGACCACACATA 58.625 45.455 0.00 0.00 30.62 2.29
306 307 3.969976 AGGCATCTACTGACCACACATAT 59.030 43.478 0.00 0.00 30.62 1.78
307 308 4.060900 GGCATCTACTGACCACACATATG 58.939 47.826 0.00 0.00 0.00 1.78
308 309 4.443457 GGCATCTACTGACCACACATATGT 60.443 45.833 1.41 1.41 40.80 2.29
321 322 3.017048 ACATATGTGTGGACAATGGGG 57.983 47.619 7.78 0.00 37.14 4.96
322 323 2.311542 ACATATGTGTGGACAATGGGGT 59.688 45.455 7.78 0.00 37.14 4.95
323 324 2.799126 TATGTGTGGACAATGGGGTC 57.201 50.000 0.00 0.00 35.11 4.46
324 325 0.322456 ATGTGTGGACAATGGGGTCG 60.322 55.000 0.00 0.00 38.70 4.79
325 326 1.072505 GTGTGGACAATGGGGTCGT 59.927 57.895 0.00 0.00 38.70 4.34
326 327 0.953960 GTGTGGACAATGGGGTCGTC 60.954 60.000 0.00 0.00 38.70 4.20
328 329 3.074281 GGACAATGGGGTCGTCCA 58.926 61.111 0.04 0.00 46.98 4.02
335 336 1.591768 ATGGGGTCGTCCATTTAGGT 58.408 50.000 0.04 0.00 44.55 3.08
336 337 2.250921 TGGGGTCGTCCATTTAGGTA 57.749 50.000 0.04 0.00 39.02 3.08
337 338 2.766736 TGGGGTCGTCCATTTAGGTAT 58.233 47.619 0.04 0.00 39.02 2.73
356 357 4.020128 GGTATTACCCTCTAAGATGCCCTG 60.020 50.000 0.98 0.00 30.04 4.45
378 379 4.094739 TGAGATTCAATATGTTGGTGCACG 59.905 41.667 11.45 0.00 35.99 5.34
425 426 1.207089 GAGACAATGTGACGGGGATCA 59.793 52.381 0.00 0.00 0.00 2.92
426 427 1.839994 AGACAATGTGACGGGGATCAT 59.160 47.619 0.00 0.00 0.00 2.45
429 430 2.216046 CAATGTGACGGGGATCATGAG 58.784 52.381 0.09 0.00 0.00 2.90
430 431 0.107456 ATGTGACGGGGATCATGAGC 59.893 55.000 1.26 1.26 0.00 4.26
431 432 0.977627 TGTGACGGGGATCATGAGCT 60.978 55.000 11.34 0.00 0.00 4.09
438 439 1.544314 GGGGATCATGAGCTAACTGCC 60.544 57.143 11.34 2.17 44.23 4.85
445 446 2.649331 TGAGCTAACTGCCGAGTAAC 57.351 50.000 0.00 0.00 44.23 2.50
462 463 3.761752 AGTAACATTACAATGGGGTGCAC 59.238 43.478 8.80 8.80 40.70 4.57
463 464 1.173043 ACATTACAATGGGGTGCACG 58.827 50.000 11.45 0.00 40.70 5.34
471 472 0.321298 ATGGGGTGCACGTGTACTTC 60.321 55.000 31.14 23.51 0.00 3.01
472 473 1.370064 GGGGTGCACGTGTACTTCT 59.630 57.895 31.14 0.00 0.00 2.85
475 476 1.271656 GGGTGCACGTGTACTTCTAGT 59.728 52.381 31.14 0.00 0.00 2.57
480 481 3.817084 TGCACGTGTACTTCTAGTGTAGT 59.183 43.478 18.38 0.00 35.46 2.73
483 484 5.116680 GCACGTGTACTTCTAGTGTAGTTTG 59.883 44.000 18.38 0.00 35.46 2.93
487 488 5.855395 GTGTACTTCTAGTGTAGTTTGACCG 59.145 44.000 0.00 0.00 0.00 4.79
491 492 6.576185 ACTTCTAGTGTAGTTTGACCGAAAA 58.424 36.000 0.00 0.00 0.00 2.29
502 503 7.477144 AGTTTGACCGAAAATTTGGAAATTC 57.523 32.000 6.43 0.00 37.62 2.17
580 581 7.942341 TGAATTATGGTAGTACCCATGAATTCC 59.058 37.037 24.69 15.85 44.93 3.01
581 582 3.830744 TGGTAGTACCCATGAATTCCG 57.169 47.619 16.91 0.00 37.50 4.30
678 684 2.491693 TGCCGGGATGAAAACTGAAATC 59.508 45.455 2.18 0.00 0.00 2.17
679 685 2.491693 GCCGGGATGAAAACTGAAATCA 59.508 45.455 2.18 0.00 0.00 2.57
681 687 4.381932 GCCGGGATGAAAACTGAAATCAAT 60.382 41.667 2.18 0.00 0.00 2.57
682 688 5.163561 GCCGGGATGAAAACTGAAATCAATA 60.164 40.000 2.18 0.00 0.00 1.90
683 689 6.627065 GCCGGGATGAAAACTGAAATCAATAA 60.627 38.462 2.18 0.00 0.00 1.40
686 692 9.369904 CGGGATGAAAACTGAAATCAATAAAAT 57.630 29.630 0.00 0.00 0.00 1.82
737 744 5.521735 TGAAATTCAAAACCATTGTTGTCCG 59.478 36.000 0.00 0.00 34.13 4.79
742 749 3.974871 AAACCATTGTTGTCCGTGTAC 57.025 42.857 0.00 0.00 34.13 2.90
754 761 4.454554 GTGTACTCACGGCGACTC 57.545 61.111 16.62 0.00 34.79 3.36
781 788 8.435430 GCTGTAGCATTTCTTAAATTTTGTTCC 58.565 33.333 0.00 0.00 41.59 3.62
784 791 6.223120 AGCATTTCTTAAATTTTGTTCCGCT 58.777 32.000 0.00 0.00 0.00 5.52
821 828 1.935873 CCATGGTGCACATACTCGAAG 59.064 52.381 20.43 0.00 37.84 3.79
822 829 2.418609 CCATGGTGCACATACTCGAAGA 60.419 50.000 20.43 0.00 37.84 2.87
826 833 3.056179 TGGTGCACATACTCGAAGAATCA 60.056 43.478 20.43 0.00 34.09 2.57
827 834 4.122776 GGTGCACATACTCGAAGAATCAT 58.877 43.478 20.43 0.00 34.09 2.45
828 835 5.163457 TGGTGCACATACTCGAAGAATCATA 60.163 40.000 20.43 0.00 34.09 2.15
832 867 6.986231 TGCACATACTCGAAGAATCATAATGT 59.014 34.615 0.00 0.00 34.09 2.71
837 872 5.605534 ACTCGAAGAATCATAATGTCTGGG 58.394 41.667 0.00 0.00 34.09 4.45
844 879 6.371278 AGAATCATAATGTCTGGGCTTTGAT 58.629 36.000 0.00 0.00 0.00 2.57
851 886 2.224744 TGTCTGGGCTTTGATTGCACTA 60.225 45.455 0.00 0.00 34.45 2.74
854 889 2.161855 TGGGCTTTGATTGCACTACTG 58.838 47.619 0.00 0.00 34.45 2.74
855 890 1.135286 GGGCTTTGATTGCACTACTGC 60.135 52.381 0.00 0.00 44.52 4.40
857 892 1.135286 GCTTTGATTGCACTACTGCCC 60.135 52.381 0.00 0.00 43.51 5.36
859 894 0.323302 TTGATTGCACTACTGCCCGA 59.677 50.000 0.00 0.00 43.51 5.14
932 967 1.930100 CACGATTGCTCCGCTGATC 59.070 57.895 0.00 0.00 0.00 2.92
944 979 0.528684 CGCTGATCGTTCTTCCCCTC 60.529 60.000 0.00 0.00 0.00 4.30
945 980 0.528684 GCTGATCGTTCTTCCCCTCG 60.529 60.000 0.00 0.00 0.00 4.63
970 1005 2.573462 CTCTTTCTCACTTCCATCCCCA 59.427 50.000 0.00 0.00 0.00 4.96
974 1009 0.254178 CTCACTTCCATCCCCACCTG 59.746 60.000 0.00 0.00 0.00 4.00
991 1026 1.202663 CCTGCCACAGATCTGATCCAG 60.203 57.143 29.27 25.04 32.44 3.86
1048 1083 3.215245 AGCTCCACGGCTCTCATC 58.785 61.111 0.00 0.00 38.24 2.92
1108 1146 1.371558 GGCGGACATCCAGATACCC 59.628 63.158 0.00 0.00 35.14 3.69
1109 1147 1.122019 GGCGGACATCCAGATACCCT 61.122 60.000 0.00 0.00 35.14 4.34
1210 1248 2.913060 GAGGAGGAGCGCCGGTAT 60.913 66.667 2.29 0.00 39.96 2.73
1473 1514 6.315091 GTCCTGCGACTAGTATATTTCTGA 57.685 41.667 0.00 0.00 35.99 3.27
1481 1522 8.459635 GCGACTAGTATATTTCTGATGGATGTA 58.540 37.037 0.00 0.00 0.00 2.29
1487 1528 9.965902 AGTATATTTCTGATGGATGTAAATCCC 57.034 33.333 9.59 0.00 39.99 3.85
1504 1545 5.630415 AATCCCCGATTGACTCAGATTTA 57.370 39.130 0.00 0.00 30.42 1.40
1505 1546 5.832539 ATCCCCGATTGACTCAGATTTAT 57.167 39.130 0.00 0.00 0.00 1.40
1506 1547 5.630415 TCCCCGATTGACTCAGATTTATT 57.370 39.130 0.00 0.00 0.00 1.40
1507 1548 6.001449 TCCCCGATTGACTCAGATTTATTT 57.999 37.500 0.00 0.00 0.00 1.40
1536 1577 9.359653 AGATTTTTATTGGTCATCTGGAATAGG 57.640 33.333 0.00 0.00 0.00 2.57
1547 1588 4.220693 TCTGGAATAGGTTGTCATGTGG 57.779 45.455 0.00 0.00 0.00 4.17
1548 1589 3.843619 TCTGGAATAGGTTGTCATGTGGA 59.156 43.478 0.00 0.00 0.00 4.02
1574 1615 5.466728 ACAGTTTGTCATAGACACATCACAC 59.533 40.000 0.00 0.00 42.60 3.82
1652 1693 3.976704 CCATAAGGCTGGTGACCAA 57.023 52.632 5.53 0.00 30.80 3.67
1656 1697 2.859165 TAAGGCTGGTGACCAAGAAG 57.141 50.000 5.53 0.00 30.80 2.85
1709 1757 2.557924 CCTCCTTTGTGCATGCTTGTTA 59.442 45.455 20.33 0.00 0.00 2.41
1842 1893 2.736682 CGAAGTCCGGCGCGATTTT 61.737 57.895 12.10 0.00 33.91 1.82
1868 1919 4.489306 GGTTCACTACCTCCAAGCTATT 57.511 45.455 0.00 0.00 44.10 1.73
1885 1936 5.426504 AGCTATTTGTCTCAATCTCCACAG 58.573 41.667 0.00 0.00 0.00 3.66
1931 1982 3.181469 ACAATCACACCTTCACGTACAGT 60.181 43.478 0.00 0.00 0.00 3.55
1946 1997 2.034879 CAGTTGTCGCCTCCGCAAT 61.035 57.895 0.00 0.00 34.69 3.56
1951 2002 1.227380 GTCGCCTCCGCAATGAGAT 60.227 57.895 0.00 0.00 34.11 2.75
2151 2202 1.450312 CGGGAGCTCCAACACCATC 60.450 63.158 33.29 12.84 37.91 3.51
2193 2244 3.131709 AGTGACTGAACTGGTTCCATG 57.868 47.619 10.44 4.48 38.77 3.66
2238 2289 3.120105 CGCGAGGTCCAGATAGCA 58.880 61.111 0.00 0.00 0.00 3.49
2239 2290 1.299468 CGCGAGGTCCAGATAGCAC 60.299 63.158 0.00 0.00 0.00 4.40
2240 2291 1.729470 CGCGAGGTCCAGATAGCACT 61.729 60.000 0.00 0.00 0.00 4.40
2241 2292 1.319541 GCGAGGTCCAGATAGCACTA 58.680 55.000 0.00 0.00 0.00 2.74
2242 2293 1.001158 GCGAGGTCCAGATAGCACTAC 60.001 57.143 0.00 0.00 0.00 2.73
2243 2294 2.577700 CGAGGTCCAGATAGCACTACT 58.422 52.381 0.00 0.00 0.00 2.57
2244 2295 3.741249 CGAGGTCCAGATAGCACTACTA 58.259 50.000 0.00 0.00 34.64 1.82
2245 2296 3.749088 CGAGGTCCAGATAGCACTACTAG 59.251 52.174 0.00 0.00 33.29 2.57
2246 2297 4.076394 GAGGTCCAGATAGCACTACTAGG 58.924 52.174 0.00 0.00 33.29 3.02
2247 2298 3.722627 AGGTCCAGATAGCACTACTAGGA 59.277 47.826 0.00 0.00 33.29 2.94
2248 2299 4.168283 AGGTCCAGATAGCACTACTAGGAA 59.832 45.833 0.00 0.00 33.29 3.36
2249 2300 4.894114 GGTCCAGATAGCACTACTAGGAAA 59.106 45.833 0.00 0.00 33.29 3.13
2250 2301 5.363005 GGTCCAGATAGCACTACTAGGAAAA 59.637 44.000 0.00 0.00 33.29 2.29
2251 2302 6.461788 GGTCCAGATAGCACTACTAGGAAAAG 60.462 46.154 0.00 0.00 33.29 2.27
2252 2303 5.598830 TCCAGATAGCACTACTAGGAAAAGG 59.401 44.000 0.00 0.00 33.29 3.11
2253 2304 5.221541 CCAGATAGCACTACTAGGAAAAGGG 60.222 48.000 0.00 0.00 33.29 3.95
2254 2305 5.364157 CAGATAGCACTACTAGGAAAAGGGT 59.636 44.000 0.00 0.00 33.29 4.34
2255 2306 5.965091 AGATAGCACTACTAGGAAAAGGGTT 59.035 40.000 0.00 0.00 33.29 4.11
2256 2307 7.069578 CAGATAGCACTACTAGGAAAAGGGTTA 59.930 40.741 0.00 0.00 33.29 2.85
2257 2308 5.417754 AGCACTACTAGGAAAAGGGTTAC 57.582 43.478 0.00 0.00 0.00 2.50
2258 2309 5.092259 AGCACTACTAGGAAAAGGGTTACT 58.908 41.667 0.00 0.00 0.00 2.24
2259 2310 6.259123 AGCACTACTAGGAAAAGGGTTACTA 58.741 40.000 0.00 0.00 0.00 1.82
2260 2311 6.727697 AGCACTACTAGGAAAAGGGTTACTAA 59.272 38.462 0.00 0.00 0.00 2.24
2261 2312 7.402361 AGCACTACTAGGAAAAGGGTTACTAAT 59.598 37.037 0.00 0.00 0.00 1.73
2262 2313 7.494952 GCACTACTAGGAAAAGGGTTACTAATG 59.505 40.741 0.00 0.00 0.00 1.90
2263 2314 7.985752 CACTACTAGGAAAAGGGTTACTAATGG 59.014 40.741 0.00 0.00 0.00 3.16
2264 2315 5.752650 ACTAGGAAAAGGGTTACTAATGGC 58.247 41.667 0.00 0.00 0.00 4.40
2265 2316 3.617284 AGGAAAAGGGTTACTAATGGCG 58.383 45.455 0.00 0.00 0.00 5.69
2266 2317 2.098607 GGAAAAGGGTTACTAATGGCGC 59.901 50.000 0.00 0.00 0.00 6.53
2267 2318 2.500392 AAAGGGTTACTAATGGCGCA 57.500 45.000 10.83 0.00 0.00 6.09
2268 2319 2.729028 AAGGGTTACTAATGGCGCAT 57.271 45.000 10.83 0.00 0.00 4.73
2269 2320 2.256117 AGGGTTACTAATGGCGCATC 57.744 50.000 10.83 0.00 0.00 3.91
2270 2321 1.488812 AGGGTTACTAATGGCGCATCA 59.511 47.619 10.83 0.00 0.00 3.07
2271 2322 1.873591 GGGTTACTAATGGCGCATCAG 59.126 52.381 10.83 2.55 0.00 2.90
2272 2323 2.561569 GGTTACTAATGGCGCATCAGT 58.438 47.619 10.83 9.06 0.00 3.41
2273 2324 2.943033 GGTTACTAATGGCGCATCAGTT 59.057 45.455 10.83 0.00 0.00 3.16
2274 2325 3.377172 GGTTACTAATGGCGCATCAGTTT 59.623 43.478 10.83 0.00 0.00 2.66
2275 2326 4.142469 GGTTACTAATGGCGCATCAGTTTT 60.142 41.667 10.83 0.00 0.00 2.43
2276 2327 3.492421 ACTAATGGCGCATCAGTTTTG 57.508 42.857 10.83 0.00 0.00 2.44
2277 2328 2.187707 CTAATGGCGCATCAGTTTTGC 58.812 47.619 10.83 0.00 36.74 3.68
2278 2329 0.390209 AATGGCGCATCAGTTTTGCC 60.390 50.000 10.83 0.00 45.91 4.52
2279 2330 1.252904 ATGGCGCATCAGTTTTGCCT 61.253 50.000 10.83 0.00 45.90 4.75
2280 2331 0.607762 TGGCGCATCAGTTTTGCCTA 60.608 50.000 10.83 0.00 45.90 3.93
2281 2332 0.179163 GGCGCATCAGTTTTGCCTAC 60.179 55.000 10.83 0.00 42.44 3.18
2282 2333 0.804989 GCGCATCAGTTTTGCCTACT 59.195 50.000 0.30 0.00 36.75 2.57
2283 2334 2.006888 GCGCATCAGTTTTGCCTACTA 58.993 47.619 0.30 0.00 36.75 1.82
2284 2335 2.418628 GCGCATCAGTTTTGCCTACTAA 59.581 45.455 0.30 0.00 36.75 2.24
2285 2336 3.065371 GCGCATCAGTTTTGCCTACTAAT 59.935 43.478 0.30 0.00 36.75 1.73
2286 2337 4.591202 CGCATCAGTTTTGCCTACTAATG 58.409 43.478 0.00 0.00 36.75 1.90
2287 2338 4.496341 CGCATCAGTTTTGCCTACTAATGG 60.496 45.833 0.00 0.00 36.75 3.16
2307 2358 4.301505 CACTACTGGTGCGCCATT 57.698 55.556 21.54 17.51 45.05 3.16
2308 2359 3.451793 CACTACTGGTGCGCCATTA 57.548 52.632 21.54 17.72 45.05 1.90
2310 2361 3.760693 CTACTGGTGCGCCATTAGT 57.239 52.632 27.23 20.89 45.05 2.24
2311 2362 2.882927 CTACTGGTGCGCCATTAGTA 57.117 50.000 27.23 20.89 45.05 1.82
2312 2363 3.386768 CTACTGGTGCGCCATTAGTAT 57.613 47.619 27.23 10.73 45.05 2.12
2313 2364 2.240493 ACTGGTGCGCCATTAGTATC 57.760 50.000 21.54 0.00 45.05 2.24
2314 2365 1.484653 ACTGGTGCGCCATTAGTATCA 59.515 47.619 21.54 0.00 45.05 2.15
2315 2366 1.867233 CTGGTGCGCCATTAGTATCAC 59.133 52.381 21.54 0.00 45.05 3.06
2316 2367 0.859232 GGTGCGCCATTAGTATCACG 59.141 55.000 12.58 0.00 34.09 4.35
2317 2368 0.232303 GTGCGCCATTAGTATCACGC 59.768 55.000 4.18 0.00 46.05 5.34
2318 2369 0.878523 TGCGCCATTAGTATCACGCC 60.879 55.000 4.18 0.00 45.32 5.68
2319 2370 0.878523 GCGCCATTAGTATCACGCCA 60.879 55.000 0.00 0.00 40.43 5.69
2320 2371 0.859232 CGCCATTAGTATCACGCCAC 59.141 55.000 0.00 0.00 0.00 5.01
2321 2372 1.538204 CGCCATTAGTATCACGCCACT 60.538 52.381 0.00 0.00 0.00 4.00
2322 2373 2.287970 CGCCATTAGTATCACGCCACTA 60.288 50.000 0.00 0.00 0.00 2.74
2323 2374 3.318017 GCCATTAGTATCACGCCACTAG 58.682 50.000 0.00 0.00 0.00 2.57
2324 2375 3.243771 GCCATTAGTATCACGCCACTAGT 60.244 47.826 0.00 0.00 0.00 2.57
2325 2376 4.022589 GCCATTAGTATCACGCCACTAGTA 60.023 45.833 0.00 0.00 0.00 1.82
2326 2377 5.336531 GCCATTAGTATCACGCCACTAGTAT 60.337 44.000 0.00 0.00 0.00 2.12
2327 2378 6.688578 CCATTAGTATCACGCCACTAGTATT 58.311 40.000 0.00 0.00 0.00 1.89
2328 2379 7.152645 CCATTAGTATCACGCCACTAGTATTT 58.847 38.462 0.00 0.00 0.00 1.40
2329 2380 7.328737 CCATTAGTATCACGCCACTAGTATTTC 59.671 40.741 0.00 0.00 0.00 2.17
2330 2381 7.578310 TTAGTATCACGCCACTAGTATTTCT 57.422 36.000 0.00 0.00 0.00 2.52
2331 2382 8.681486 TTAGTATCACGCCACTAGTATTTCTA 57.319 34.615 0.00 0.00 0.00 2.10
2332 2383 7.578310 AGTATCACGCCACTAGTATTTCTAA 57.422 36.000 0.00 0.00 0.00 2.10
2333 2384 7.424001 AGTATCACGCCACTAGTATTTCTAAC 58.576 38.462 0.00 0.00 0.00 2.34
2334 2385 5.909621 TCACGCCACTAGTATTTCTAACT 57.090 39.130 0.00 0.00 0.00 2.24
2335 2386 7.578310 ATCACGCCACTAGTATTTCTAACTA 57.422 36.000 0.00 0.00 0.00 2.24
2336 2387 7.395190 TCACGCCACTAGTATTTCTAACTAA 57.605 36.000 0.00 0.00 0.00 2.24
2337 2388 8.004087 TCACGCCACTAGTATTTCTAACTAAT 57.996 34.615 0.00 0.00 0.00 1.73
2338 2389 7.919091 TCACGCCACTAGTATTTCTAACTAATG 59.081 37.037 0.00 0.00 0.00 1.90
2339 2390 7.169308 CACGCCACTAGTATTTCTAACTAATGG 59.831 40.741 6.42 6.42 45.37 3.16
2341 2392 7.639162 CCACTAGTATTTCTAACTAATGGCG 57.361 40.000 0.00 0.00 39.26 5.69
2342 2393 6.145696 CCACTAGTATTTCTAACTAATGGCGC 59.854 42.308 0.00 0.00 39.26 6.53
2343 2394 6.700081 CACTAGTATTTCTAACTAATGGCGCA 59.300 38.462 10.83 0.00 0.00 6.09
2344 2395 5.986004 AGTATTTCTAACTAATGGCGCAC 57.014 39.130 10.83 0.00 0.00 5.34
2345 2396 4.814771 AGTATTTCTAACTAATGGCGCACC 59.185 41.667 10.83 0.00 0.00 5.01
2358 2409 3.282157 GCACCATCGATGCGCCAT 61.282 61.111 20.25 0.00 32.45 4.40
2359 2410 2.837883 GCACCATCGATGCGCCATT 61.838 57.895 20.25 0.00 32.45 3.16
2360 2411 1.506309 GCACCATCGATGCGCCATTA 61.506 55.000 20.25 0.00 32.45 1.90
2361 2412 0.514255 CACCATCGATGCGCCATTAG 59.486 55.000 20.25 6.20 0.00 1.73
2362 2413 0.106708 ACCATCGATGCGCCATTAGT 59.893 50.000 20.25 6.86 0.00 2.24
2363 2414 1.343142 ACCATCGATGCGCCATTAGTA 59.657 47.619 20.25 0.00 0.00 1.82
2364 2415 2.028112 ACCATCGATGCGCCATTAGTAT 60.028 45.455 20.25 0.00 0.00 2.12
2365 2416 2.604914 CCATCGATGCGCCATTAGTATC 59.395 50.000 20.25 0.00 0.00 2.24
2366 2417 3.515630 CATCGATGCGCCATTAGTATCT 58.484 45.455 13.37 0.00 0.00 1.98
2367 2418 2.946564 TCGATGCGCCATTAGTATCTG 58.053 47.619 4.18 0.00 0.00 2.90
2368 2419 1.391485 CGATGCGCCATTAGTATCTGC 59.609 52.381 4.18 0.00 0.00 4.26
2371 2422 2.899153 CGCCATTAGTATCTGCGCA 58.101 52.632 10.98 10.98 38.69 6.09
2372 2423 0.508641 CGCCATTAGTATCTGCGCAC 59.491 55.000 5.66 0.00 38.69 5.34
2373 2424 0.868406 GCCATTAGTATCTGCGCACC 59.132 55.000 5.66 0.00 0.00 5.01
2374 2425 1.810031 GCCATTAGTATCTGCGCACCA 60.810 52.381 5.66 0.00 0.00 4.17
2375 2426 2.771089 CCATTAGTATCTGCGCACCAT 58.229 47.619 5.66 3.83 0.00 3.55
2376 2427 2.481568 CCATTAGTATCTGCGCACCATG 59.518 50.000 5.66 0.00 0.00 3.66
2377 2428 1.581934 TTAGTATCTGCGCACCATGC 58.418 50.000 5.66 5.18 40.69 4.06
2378 2429 0.463620 TAGTATCTGCGCACCATGCA 59.536 50.000 5.66 0.00 45.36 3.96
2387 2438 3.445687 CACCATGCAGTGCGCCAT 61.446 61.111 11.20 0.00 41.33 4.40
2388 2439 2.677524 ACCATGCAGTGCGCCATT 60.678 55.556 11.20 0.00 41.33 3.16
2389 2440 1.378382 ACCATGCAGTGCGCCATTA 60.378 52.632 11.20 0.00 41.33 1.90
2390 2441 1.357690 CCATGCAGTGCGCCATTAG 59.642 57.895 11.20 0.00 41.33 1.73
2391 2442 1.378882 CCATGCAGTGCGCCATTAGT 61.379 55.000 11.20 0.00 41.33 2.24
2392 2443 1.298602 CATGCAGTGCGCCATTAGTA 58.701 50.000 11.20 0.00 41.33 1.82
2393 2444 1.875514 CATGCAGTGCGCCATTAGTAT 59.124 47.619 11.20 0.00 41.33 2.12
2394 2445 2.900716 TGCAGTGCGCCATTAGTATA 57.099 45.000 11.20 0.00 41.33 1.47
2395 2446 2.754472 TGCAGTGCGCCATTAGTATAG 58.246 47.619 11.20 0.00 41.33 1.31
2396 2447 2.364002 TGCAGTGCGCCATTAGTATAGA 59.636 45.455 11.20 0.00 41.33 1.98
2397 2448 3.181470 TGCAGTGCGCCATTAGTATAGAA 60.181 43.478 11.20 0.00 41.33 2.10
2398 2449 3.184581 GCAGTGCGCCATTAGTATAGAAC 59.815 47.826 4.18 0.00 32.94 3.01
2399 2450 4.368315 CAGTGCGCCATTAGTATAGAACA 58.632 43.478 4.18 0.00 0.00 3.18
2400 2451 4.209288 CAGTGCGCCATTAGTATAGAACAC 59.791 45.833 4.18 0.00 0.00 3.32
2401 2452 3.493503 GTGCGCCATTAGTATAGAACACC 59.506 47.826 4.18 0.00 0.00 4.16
2402 2453 3.133183 TGCGCCATTAGTATAGAACACCA 59.867 43.478 4.18 0.00 0.00 4.17
2403 2454 4.202315 TGCGCCATTAGTATAGAACACCAT 60.202 41.667 4.18 0.00 0.00 3.55
2404 2455 4.152402 GCGCCATTAGTATAGAACACCATG 59.848 45.833 0.00 0.00 0.00 3.66
2405 2456 4.152402 CGCCATTAGTATAGAACACCATGC 59.848 45.833 0.00 0.00 0.00 4.06
2406 2457 4.152402 GCCATTAGTATAGAACACCATGCG 59.848 45.833 0.00 0.00 0.00 4.73
2407 2458 4.152402 CCATTAGTATAGAACACCATGCGC 59.848 45.833 0.00 0.00 0.00 6.09
2408 2459 2.240493 AGTATAGAACACCATGCGCC 57.760 50.000 4.18 0.00 0.00 6.53
2409 2460 1.484653 AGTATAGAACACCATGCGCCA 59.515 47.619 4.18 0.00 0.00 5.69
2410 2461 2.104792 AGTATAGAACACCATGCGCCAT 59.895 45.455 4.18 0.00 0.00 4.40
2411 2462 2.928801 ATAGAACACCATGCGCCATA 57.071 45.000 4.18 0.00 0.00 2.74
2412 2463 1.948104 TAGAACACCATGCGCCATAC 58.052 50.000 4.18 0.00 0.00 2.39
2413 2464 0.253044 AGAACACCATGCGCCATACT 59.747 50.000 4.18 0.00 0.00 2.12
2414 2465 1.484653 AGAACACCATGCGCCATACTA 59.515 47.619 4.18 0.00 0.00 1.82
2415 2466 2.093181 AGAACACCATGCGCCATACTAA 60.093 45.455 4.18 0.00 0.00 2.24
2416 2467 2.638480 ACACCATGCGCCATACTAAT 57.362 45.000 4.18 0.00 0.00 1.73
2417 2468 2.221169 ACACCATGCGCCATACTAATG 58.779 47.619 4.18 0.00 0.00 1.90
2428 2479 4.621068 CCATACTAATGGTGCACTGTTG 57.379 45.455 17.98 5.90 46.68 3.33
2429 2480 3.378112 CCATACTAATGGTGCACTGTTGG 59.622 47.826 17.98 15.21 46.68 3.77
2430 2481 1.909700 ACTAATGGTGCACTGTTGGG 58.090 50.000 17.98 11.06 0.00 4.12
2431 2482 1.144913 ACTAATGGTGCACTGTTGGGT 59.855 47.619 17.98 11.60 0.00 4.51
2432 2483 1.541147 CTAATGGTGCACTGTTGGGTG 59.459 52.381 17.98 0.00 39.91 4.61
2433 2484 0.106268 AATGGTGCACTGTTGGGTGA 60.106 50.000 17.98 0.00 39.34 4.02
2434 2485 0.112995 ATGGTGCACTGTTGGGTGAT 59.887 50.000 17.98 0.00 39.34 3.06
2435 2486 0.822944 TGGTGCACTGTTGGGTGATG 60.823 55.000 17.98 0.00 39.34 3.07
2436 2487 1.286880 GTGCACTGTTGGGTGATGC 59.713 57.895 10.32 0.00 39.34 3.91
2437 2488 2.260154 TGCACTGTTGGGTGATGCG 61.260 57.895 0.00 0.00 39.18 4.73
2438 2489 2.562912 CACTGTTGGGTGATGCGC 59.437 61.111 0.00 0.00 39.34 6.09
2439 2490 2.672996 ACTGTTGGGTGATGCGCC 60.673 61.111 4.18 0.00 0.00 6.53
2440 2491 2.672651 CTGTTGGGTGATGCGCCA 60.673 61.111 4.18 0.00 35.42 5.69
2441 2492 2.035469 TGTTGGGTGATGCGCCAT 59.965 55.556 4.18 0.00 35.42 4.40
2442 2493 1.597797 CTGTTGGGTGATGCGCCATT 61.598 55.000 4.18 0.00 35.42 3.16
2443 2494 0.322906 TGTTGGGTGATGCGCCATTA 60.323 50.000 4.18 0.00 35.42 1.90
2444 2495 0.381801 GTTGGGTGATGCGCCATTAG 59.618 55.000 4.18 0.00 35.42 1.73
2445 2496 0.034574 TTGGGTGATGCGCCATTAGT 60.035 50.000 4.18 0.00 35.42 2.24
2446 2497 0.833949 TGGGTGATGCGCCATTAGTA 59.166 50.000 4.18 0.00 35.42 1.82
2447 2498 1.419762 TGGGTGATGCGCCATTAGTAT 59.580 47.619 4.18 0.00 35.42 2.12
2448 2499 1.806542 GGGTGATGCGCCATTAGTATG 59.193 52.381 4.18 0.00 35.42 2.39
2449 2500 2.549992 GGGTGATGCGCCATTAGTATGA 60.550 50.000 4.18 0.00 35.42 2.15
2450 2501 3.138304 GGTGATGCGCCATTAGTATGAA 58.862 45.455 4.18 0.00 33.37 2.57
2451 2502 3.753272 GGTGATGCGCCATTAGTATGAAT 59.247 43.478 4.18 0.00 33.37 2.57
2452 2503 4.935205 GGTGATGCGCCATTAGTATGAATA 59.065 41.667 4.18 0.00 33.37 1.75
2453 2504 5.586243 GGTGATGCGCCATTAGTATGAATAT 59.414 40.000 4.18 0.00 33.37 1.28
2454 2505 6.094048 GGTGATGCGCCATTAGTATGAATATT 59.906 38.462 4.18 0.00 33.37 1.28
2455 2506 7.279981 GGTGATGCGCCATTAGTATGAATATTA 59.720 37.037 4.18 0.00 33.37 0.98
2456 2507 8.331022 GTGATGCGCCATTAGTATGAATATTAG 58.669 37.037 4.18 0.00 33.37 1.73
2457 2508 7.495606 TGATGCGCCATTAGTATGAATATTAGG 59.504 37.037 4.18 0.00 33.37 2.69
2458 2509 6.707290 TGCGCCATTAGTATGAATATTAGGT 58.293 36.000 4.18 0.00 33.37 3.08
2459 2510 7.165485 TGCGCCATTAGTATGAATATTAGGTT 58.835 34.615 4.18 0.00 33.37 3.50
2460 2511 7.663905 TGCGCCATTAGTATGAATATTAGGTTT 59.336 33.333 4.18 0.00 33.37 3.27
2461 2512 8.512138 GCGCCATTAGTATGAATATTAGGTTTT 58.488 33.333 0.00 0.00 33.37 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.612174 TTGCAGTCTCTCGGCTACCT 60.612 55.000 0.00 0.00 38.06 3.08
1 2 0.458716 GTTGCAGTCTCTCGGCTACC 60.459 60.000 0.00 0.00 37.13 3.18
3 4 1.506718 CGTTGCAGTCTCTCGGCTA 59.493 57.895 0.00 0.00 38.06 3.93
4 5 2.259818 CGTTGCAGTCTCTCGGCT 59.740 61.111 0.00 0.00 38.06 5.52
5 6 3.482783 GCGTTGCAGTCTCTCGGC 61.483 66.667 0.00 0.00 37.73 5.54
6 7 2.049156 TGCGTTGCAGTCTCTCGG 60.049 61.111 0.00 0.00 33.32 4.63
17 18 4.988598 AGCGTCCCACCTGCGTTG 62.989 66.667 0.00 0.00 0.00 4.10
18 19 4.988598 CAGCGTCCCACCTGCGTT 62.989 66.667 0.00 0.00 0.00 4.84
22 23 2.821366 GATGCAGCGTCCCACCTG 60.821 66.667 2.82 0.00 0.00 4.00
23 24 4.101448 GGATGCAGCGTCCCACCT 62.101 66.667 21.87 0.00 33.70 4.00
28 29 2.650813 CTACCTGGGATGCAGCGTCC 62.651 65.000 24.00 24.00 38.72 4.79
29 30 1.227380 CTACCTGGGATGCAGCGTC 60.227 63.158 6.00 6.00 0.00 5.19
30 31 1.050988 ATCTACCTGGGATGCAGCGT 61.051 55.000 0.00 0.00 0.00 5.07
31 32 0.602106 CATCTACCTGGGATGCAGCG 60.602 60.000 0.00 0.00 34.97 5.18
32 33 3.319135 CATCTACCTGGGATGCAGC 57.681 57.895 0.00 0.00 34.97 5.25
36 37 0.839277 TGTGGCATCTACCTGGGATG 59.161 55.000 8.17 8.17 42.25 3.51
37 38 1.135094 CTGTGGCATCTACCTGGGAT 58.865 55.000 0.00 0.00 0.00 3.85
38 39 0.252696 ACTGTGGCATCTACCTGGGA 60.253 55.000 0.00 0.00 0.00 4.37
39 40 0.107508 CACTGTGGCATCTACCTGGG 60.108 60.000 0.00 0.00 0.00 4.45
40 41 0.107508 CCACTGTGGCATCTACCTGG 60.108 60.000 14.87 0.00 0.00 4.45
41 42 3.465990 CCACTGTGGCATCTACCTG 57.534 57.895 14.87 0.00 0.00 4.00
61 62 0.809385 TAGTCACTCTAGCCGTGTGC 59.191 55.000 10.50 6.57 37.12 4.57
62 63 1.202043 CGTAGTCACTCTAGCCGTGTG 60.202 57.143 10.50 5.62 38.22 3.82
63 64 1.085091 CGTAGTCACTCTAGCCGTGT 58.915 55.000 10.50 0.00 34.14 4.49
64 65 0.377554 CCGTAGTCACTCTAGCCGTG 59.622 60.000 5.85 5.85 0.00 4.94
65 66 1.375098 GCCGTAGTCACTCTAGCCGT 61.375 60.000 0.00 0.00 0.00 5.68
66 67 1.355916 GCCGTAGTCACTCTAGCCG 59.644 63.158 0.00 0.00 0.00 5.52
67 68 0.382515 CTGCCGTAGTCACTCTAGCC 59.617 60.000 0.00 0.00 0.00 3.93
68 69 1.096416 ACTGCCGTAGTCACTCTAGC 58.904 55.000 0.00 0.00 33.17 3.42
69 70 1.402259 CCACTGCCGTAGTCACTCTAG 59.598 57.143 0.00 0.00 37.60 2.43
70 71 1.460504 CCACTGCCGTAGTCACTCTA 58.539 55.000 0.00 0.00 37.60 2.43
71 72 1.878656 GCCACTGCCGTAGTCACTCT 61.879 60.000 0.00 0.00 37.60 3.24
72 73 1.446272 GCCACTGCCGTAGTCACTC 60.446 63.158 0.00 0.00 37.60 3.51
73 74 2.657237 GCCACTGCCGTAGTCACT 59.343 61.111 0.00 0.00 37.60 3.41
74 75 2.809601 CGCCACTGCCGTAGTCAC 60.810 66.667 0.00 0.00 37.60 3.67
75 76 4.063967 CCGCCACTGCCGTAGTCA 62.064 66.667 0.00 0.00 37.60 3.41
76 77 4.065281 ACCGCCACTGCCGTAGTC 62.065 66.667 0.00 0.00 37.60 2.59
77 78 4.373116 CACCGCCACTGCCGTAGT 62.373 66.667 0.00 0.00 41.36 2.73
78 79 3.371097 ATCACCGCCACTGCCGTAG 62.371 63.158 0.00 0.00 0.00 3.51
79 80 3.387091 ATCACCGCCACTGCCGTA 61.387 61.111 0.00 0.00 0.00 4.02
81 82 4.758251 TCATCACCGCCACTGCCG 62.758 66.667 0.00 0.00 0.00 5.69
82 83 3.127533 GTCATCACCGCCACTGCC 61.128 66.667 0.00 0.00 0.00 4.85
83 84 3.490759 CGTCATCACCGCCACTGC 61.491 66.667 0.00 0.00 0.00 4.40
84 85 1.153568 ATCGTCATCACCGCCACTG 60.154 57.895 0.00 0.00 0.00 3.66
85 86 1.153568 CATCGTCATCACCGCCACT 60.154 57.895 0.00 0.00 0.00 4.00
86 87 2.173669 CCATCGTCATCACCGCCAC 61.174 63.158 0.00 0.00 0.00 5.01
87 88 2.186644 CCATCGTCATCACCGCCA 59.813 61.111 0.00 0.00 0.00 5.69
88 89 3.272334 GCCATCGTCATCACCGCC 61.272 66.667 0.00 0.00 0.00 6.13
89 90 2.511373 TGCCATCGTCATCACCGC 60.511 61.111 0.00 0.00 0.00 5.68
90 91 0.102300 TAGTGCCATCGTCATCACCG 59.898 55.000 0.00 0.00 0.00 4.94
91 92 1.858091 CTAGTGCCATCGTCATCACC 58.142 55.000 0.00 0.00 0.00 4.02
92 93 1.212616 GCTAGTGCCATCGTCATCAC 58.787 55.000 0.00 0.00 0.00 3.06
93 94 0.823460 TGCTAGTGCCATCGTCATCA 59.177 50.000 0.00 0.00 38.71 3.07
94 95 1.202463 ACTGCTAGTGCCATCGTCATC 60.202 52.381 0.00 0.00 38.71 2.92
95 96 0.826715 ACTGCTAGTGCCATCGTCAT 59.173 50.000 0.00 0.00 38.71 3.06
96 97 0.108662 CACTGCTAGTGCCATCGTCA 60.109 55.000 3.83 0.00 39.62 4.35
97 98 2.670635 CACTGCTAGTGCCATCGTC 58.329 57.895 3.83 0.00 39.62 4.20
98 99 4.919653 CACTGCTAGTGCCATCGT 57.080 55.556 3.83 0.00 39.62 3.73
105 106 3.459033 TCCTTCGAGGACACTGCTAGTG 61.459 54.545 12.81 12.81 40.06 2.74
106 107 1.178276 CCTTCGAGGACACTGCTAGT 58.822 55.000 0.00 0.00 37.67 2.57
107 108 1.464734 TCCTTCGAGGACACTGCTAG 58.535 55.000 0.00 0.00 40.06 3.42
108 109 3.664240 TCCTTCGAGGACACTGCTA 57.336 52.632 0.00 0.00 40.06 3.49
109 110 4.521559 TCCTTCGAGGACACTGCT 57.478 55.556 0.00 0.00 40.06 4.24
116 117 0.465705 GGATGCATGTCCTTCGAGGA 59.534 55.000 2.46 0.00 43.43 3.71
117 118 0.533755 GGGATGCATGTCCTTCGAGG 60.534 60.000 2.46 0.00 38.38 4.63
118 119 0.178767 TGGGATGCATGTCCTTCGAG 59.821 55.000 2.46 0.00 38.38 4.04
119 120 0.178767 CTGGGATGCATGTCCTTCGA 59.821 55.000 2.46 0.00 38.38 3.71
120 121 0.816825 CCTGGGATGCATGTCCTTCG 60.817 60.000 2.46 0.00 38.38 3.79
121 122 0.257039 ACCTGGGATGCATGTCCTTC 59.743 55.000 2.46 0.00 38.38 3.46
122 123 0.257039 GACCTGGGATGCATGTCCTT 59.743 55.000 2.46 0.00 38.38 3.36
123 124 1.918253 GACCTGGGATGCATGTCCT 59.082 57.895 2.46 0.00 38.38 3.85
124 125 1.524621 CGACCTGGGATGCATGTCC 60.525 63.158 2.46 6.30 37.56 4.02
125 126 0.811616 GACGACCTGGGATGCATGTC 60.812 60.000 2.46 3.75 0.00 3.06
126 127 1.221840 GACGACCTGGGATGCATGT 59.778 57.895 2.46 0.00 0.00 3.21
127 128 1.884464 CGACGACCTGGGATGCATG 60.884 63.158 2.46 0.00 0.00 4.06
128 129 2.298158 GACGACGACCTGGGATGCAT 62.298 60.000 0.00 0.00 0.00 3.96
129 130 2.994995 ACGACGACCTGGGATGCA 60.995 61.111 0.00 0.00 0.00 3.96
130 131 2.202756 GACGACGACCTGGGATGC 60.203 66.667 0.00 0.00 0.00 3.91
131 132 2.284798 CTGGACGACGACCTGGGATG 62.285 65.000 16.98 0.00 0.00 3.51
132 133 2.036731 TGGACGACGACCTGGGAT 59.963 61.111 16.98 0.00 0.00 3.85
133 134 2.675423 CTGGACGACGACCTGGGA 60.675 66.667 16.98 0.00 0.00 4.37
134 135 4.436998 GCTGGACGACGACCTGGG 62.437 72.222 20.69 11.15 0.00 4.45
135 136 1.592400 TAAGCTGGACGACGACCTGG 61.592 60.000 20.69 13.16 0.00 4.45
136 137 0.456221 ATAAGCTGGACGACGACCTG 59.544 55.000 16.98 16.74 0.00 4.00
137 138 0.739561 GATAAGCTGGACGACGACCT 59.260 55.000 16.98 0.00 0.00 3.85
138 139 0.248949 GGATAAGCTGGACGACGACC 60.249 60.000 9.52 9.52 0.00 4.79
139 140 0.454600 TGGATAAGCTGGACGACGAC 59.545 55.000 0.00 0.00 0.00 4.34
140 141 1.179152 TTGGATAAGCTGGACGACGA 58.821 50.000 0.00 0.00 0.00 4.20
141 142 2.225068 ATTGGATAAGCTGGACGACG 57.775 50.000 0.00 0.00 0.00 5.12
142 143 4.585955 TCTATTGGATAAGCTGGACGAC 57.414 45.455 0.00 0.00 0.00 4.34
143 144 5.808366 AATCTATTGGATAAGCTGGACGA 57.192 39.130 0.00 0.00 33.71 4.20
144 145 6.662616 CAAAATCTATTGGATAAGCTGGACG 58.337 40.000 0.00 0.00 33.71 4.79
178 179 9.953565 ACAAGCAAACTATATGGAAGTAACTTA 57.046 29.630 0.00 0.00 0.00 2.24
179 180 8.730680 CACAAGCAAACTATATGGAAGTAACTT 58.269 33.333 0.00 0.00 0.00 2.66
180 181 8.100791 TCACAAGCAAACTATATGGAAGTAACT 58.899 33.333 0.00 0.00 0.00 2.24
181 182 8.263940 TCACAAGCAAACTATATGGAAGTAAC 57.736 34.615 0.00 0.00 0.00 2.50
187 188 9.890629 GGATATATCACAAGCAAACTATATGGA 57.109 33.333 14.60 0.00 0.00 3.41
188 189 8.820933 CGGATATATCACAAGCAAACTATATGG 58.179 37.037 14.60 0.00 0.00 2.74
189 190 9.586435 TCGGATATATCACAAGCAAACTATATG 57.414 33.333 14.60 0.00 0.00 1.78
191 192 9.419297 GTTCGGATATATCACAAGCAAACTATA 57.581 33.333 14.60 0.00 0.00 1.31
192 193 8.150945 AGTTCGGATATATCACAAGCAAACTAT 58.849 33.333 14.60 0.00 0.00 2.12
193 194 7.438160 CAGTTCGGATATATCACAAGCAAACTA 59.562 37.037 14.60 0.00 0.00 2.24
194 195 6.258727 CAGTTCGGATATATCACAAGCAAACT 59.741 38.462 14.60 9.04 0.00 2.66
195 196 6.422223 CAGTTCGGATATATCACAAGCAAAC 58.578 40.000 14.60 7.28 0.00 2.93
196 197 5.007626 GCAGTTCGGATATATCACAAGCAAA 59.992 40.000 14.60 0.00 0.00 3.68
197 198 4.511454 GCAGTTCGGATATATCACAAGCAA 59.489 41.667 14.60 0.00 0.00 3.91
198 199 4.058124 GCAGTTCGGATATATCACAAGCA 58.942 43.478 14.60 0.00 0.00 3.91
199 200 4.058124 TGCAGTTCGGATATATCACAAGC 58.942 43.478 14.60 11.76 0.00 4.01
200 201 6.791887 ATTGCAGTTCGGATATATCACAAG 57.208 37.500 14.60 3.27 0.00 3.16
201 202 8.669946 TTTATTGCAGTTCGGATATATCACAA 57.330 30.769 14.60 3.59 0.00 3.33
202 203 8.669946 TTTTATTGCAGTTCGGATATATCACA 57.330 30.769 14.60 0.00 0.00 3.58
206 207 9.912634 CCAAATTTTATTGCAGTTCGGATATAT 57.087 29.630 0.00 0.00 0.00 0.86
207 208 9.126151 TCCAAATTTTATTGCAGTTCGGATATA 57.874 29.630 0.00 0.00 0.00 0.86
208 209 8.006298 TCCAAATTTTATTGCAGTTCGGATAT 57.994 30.769 0.00 0.00 0.00 1.63
209 210 7.397892 TCCAAATTTTATTGCAGTTCGGATA 57.602 32.000 0.00 0.00 0.00 2.59
210 211 6.279513 TCCAAATTTTATTGCAGTTCGGAT 57.720 33.333 0.00 0.00 0.00 4.18
211 212 5.713792 TCCAAATTTTATTGCAGTTCGGA 57.286 34.783 0.00 0.00 0.00 4.55
212 213 6.966435 ATTCCAAATTTTATTGCAGTTCGG 57.034 33.333 0.00 0.00 0.00 4.30
238 239 9.640952 CCATTTCTCCCCTATTTTCAACTATTA 57.359 33.333 0.00 0.00 0.00 0.98
239 240 7.565029 CCCATTTCTCCCCTATTTTCAACTATT 59.435 37.037 0.00 0.00 0.00 1.73
240 241 7.069344 CCCATTTCTCCCCTATTTTCAACTAT 58.931 38.462 0.00 0.00 0.00 2.12
241 242 6.011096 ACCCATTTCTCCCCTATTTTCAACTA 60.011 38.462 0.00 0.00 0.00 2.24
242 243 5.222547 ACCCATTTCTCCCCTATTTTCAACT 60.223 40.000 0.00 0.00 0.00 3.16
243 244 5.023452 ACCCATTTCTCCCCTATTTTCAAC 58.977 41.667 0.00 0.00 0.00 3.18
244 245 5.022787 CACCCATTTCTCCCCTATTTTCAA 58.977 41.667 0.00 0.00 0.00 2.69
245 246 4.293634 TCACCCATTTCTCCCCTATTTTCA 59.706 41.667 0.00 0.00 0.00 2.69
246 247 4.867086 TCACCCATTTCTCCCCTATTTTC 58.133 43.478 0.00 0.00 0.00 2.29
247 248 4.965283 TCACCCATTTCTCCCCTATTTT 57.035 40.909 0.00 0.00 0.00 1.82
248 249 5.458215 GCTATCACCCATTTCTCCCCTATTT 60.458 44.000 0.00 0.00 0.00 1.40
249 250 4.043435 GCTATCACCCATTTCTCCCCTATT 59.957 45.833 0.00 0.00 0.00 1.73
250 251 3.589288 GCTATCACCCATTTCTCCCCTAT 59.411 47.826 0.00 0.00 0.00 2.57
251 252 2.979678 GCTATCACCCATTTCTCCCCTA 59.020 50.000 0.00 0.00 0.00 3.53
252 253 1.777272 GCTATCACCCATTTCTCCCCT 59.223 52.381 0.00 0.00 0.00 4.79
253 254 1.494721 TGCTATCACCCATTTCTCCCC 59.505 52.381 0.00 0.00 0.00 4.81
254 255 3.515602 ATGCTATCACCCATTTCTCCC 57.484 47.619 0.00 0.00 0.00 4.30
255 256 4.038402 CCAAATGCTATCACCCATTTCTCC 59.962 45.833 0.00 0.00 39.04 3.71
256 257 4.646492 ACCAAATGCTATCACCCATTTCTC 59.354 41.667 0.00 0.00 39.04 2.87
257 258 4.403432 CACCAAATGCTATCACCCATTTCT 59.597 41.667 0.00 0.00 39.04 2.52
258 259 4.441913 CCACCAAATGCTATCACCCATTTC 60.442 45.833 0.00 0.00 39.04 2.17
259 260 3.451902 CCACCAAATGCTATCACCCATTT 59.548 43.478 0.00 0.00 41.05 2.32
260 261 3.033184 CCACCAAATGCTATCACCCATT 58.967 45.455 0.00 0.00 33.35 3.16
261 262 2.024080 ACCACCAAATGCTATCACCCAT 60.024 45.455 0.00 0.00 0.00 4.00
262 263 1.357420 ACCACCAAATGCTATCACCCA 59.643 47.619 0.00 0.00 0.00 4.51
263 264 2.143876 ACCACCAAATGCTATCACCC 57.856 50.000 0.00 0.00 0.00 4.61
264 265 3.632145 CCTAACCACCAAATGCTATCACC 59.368 47.826 0.00 0.00 0.00 4.02
265 266 3.066760 GCCTAACCACCAAATGCTATCAC 59.933 47.826 0.00 0.00 0.00 3.06
266 267 3.287222 GCCTAACCACCAAATGCTATCA 58.713 45.455 0.00 0.00 0.00 2.15
267 268 3.287222 TGCCTAACCACCAAATGCTATC 58.713 45.455 0.00 0.00 0.00 2.08
268 269 3.380471 TGCCTAACCACCAAATGCTAT 57.620 42.857 0.00 0.00 0.00 2.97
269 270 2.889170 TGCCTAACCACCAAATGCTA 57.111 45.000 0.00 0.00 0.00 3.49
270 271 2.102578 GATGCCTAACCACCAAATGCT 58.897 47.619 0.00 0.00 0.00 3.79
271 272 2.102578 AGATGCCTAACCACCAAATGC 58.897 47.619 0.00 0.00 0.00 3.56
272 273 4.336433 CAGTAGATGCCTAACCACCAAATG 59.664 45.833 0.00 0.00 0.00 2.32
273 274 4.227300 TCAGTAGATGCCTAACCACCAAAT 59.773 41.667 0.00 0.00 0.00 2.32
274 275 3.585289 TCAGTAGATGCCTAACCACCAAA 59.415 43.478 0.00 0.00 0.00 3.28
275 276 3.055385 GTCAGTAGATGCCTAACCACCAA 60.055 47.826 0.00 0.00 0.00 3.67
276 277 2.500098 GTCAGTAGATGCCTAACCACCA 59.500 50.000 0.00 0.00 0.00 4.17
277 278 2.158943 GGTCAGTAGATGCCTAACCACC 60.159 54.545 0.00 0.00 0.00 4.61
278 279 2.500098 TGGTCAGTAGATGCCTAACCAC 59.500 50.000 0.00 0.00 31.63 4.16
279 280 2.500098 GTGGTCAGTAGATGCCTAACCA 59.500 50.000 0.00 0.00 33.25 3.67
280 281 2.500098 TGTGGTCAGTAGATGCCTAACC 59.500 50.000 0.00 0.00 0.00 2.85
281 282 3.056107 TGTGTGGTCAGTAGATGCCTAAC 60.056 47.826 0.00 0.00 0.00 2.34
282 283 3.169908 TGTGTGGTCAGTAGATGCCTAA 58.830 45.455 0.00 0.00 0.00 2.69
283 284 2.815158 TGTGTGGTCAGTAGATGCCTA 58.185 47.619 0.00 0.00 0.00 3.93
284 285 1.644509 TGTGTGGTCAGTAGATGCCT 58.355 50.000 0.00 0.00 0.00 4.75
285 286 2.698855 ATGTGTGGTCAGTAGATGCC 57.301 50.000 0.00 0.00 0.00 4.40
286 287 4.697514 ACATATGTGTGGTCAGTAGATGC 58.302 43.478 7.78 0.00 37.14 3.91
301 302 2.311542 ACCCCATTGTCCACACATATGT 59.688 45.455 1.41 1.41 40.80 2.29
302 303 2.951642 GACCCCATTGTCCACACATATG 59.048 50.000 0.00 0.00 30.55 1.78
303 304 2.421388 CGACCCCATTGTCCACACATAT 60.421 50.000 0.00 0.00 30.55 1.78
304 305 1.065782 CGACCCCATTGTCCACACATA 60.066 52.381 0.00 0.00 30.55 2.29
305 306 0.322456 CGACCCCATTGTCCACACAT 60.322 55.000 0.00 0.00 30.55 3.21
306 307 1.072332 CGACCCCATTGTCCACACA 59.928 57.895 0.00 0.00 31.35 3.72
307 308 0.953960 GACGACCCCATTGTCCACAC 60.954 60.000 0.00 0.00 35.85 3.82
308 309 1.373435 GACGACCCCATTGTCCACA 59.627 57.895 0.00 0.00 35.85 4.17
309 310 4.296265 GACGACCCCATTGTCCAC 57.704 61.111 0.00 0.00 35.85 4.02
315 316 9.540009 GGTAATACCTAAATGGACGACCCCATT 62.540 44.444 1.41 13.03 45.21 3.16
316 317 8.160092 GGTAATACCTAAATGGACGACCCCAT 62.160 46.154 1.41 2.27 40.94 4.00
317 318 2.250921 TACCTAAATGGACGACCCCA 57.749 50.000 0.34 0.00 41.05 4.96
318 319 3.851458 AATACCTAAATGGACGACCCC 57.149 47.619 0.34 0.00 39.71 4.95
319 320 4.503817 GGGTAATACCTAAATGGACGACCC 60.504 50.000 9.58 0.00 38.64 4.46
320 321 4.346127 AGGGTAATACCTAAATGGACGACC 59.654 45.833 9.58 0.00 39.65 4.79
321 322 5.303845 AGAGGGTAATACCTAAATGGACGAC 59.696 44.000 9.58 0.00 42.10 4.34
322 323 5.461327 AGAGGGTAATACCTAAATGGACGA 58.539 41.667 9.58 0.00 42.10 4.20
323 324 5.803237 AGAGGGTAATACCTAAATGGACG 57.197 43.478 9.58 0.00 42.10 4.79
324 325 8.488308 TCTTAGAGGGTAATACCTAAATGGAC 57.512 38.462 9.58 0.00 42.10 4.02
325 326 9.101325 CATCTTAGAGGGTAATACCTAAATGGA 57.899 37.037 9.58 2.87 42.10 3.41
326 327 7.824779 GCATCTTAGAGGGTAATACCTAAATGG 59.175 40.741 9.58 0.00 42.10 3.16
327 328 7.824779 GGCATCTTAGAGGGTAATACCTAAATG 59.175 40.741 9.58 7.97 42.10 2.32
328 329 7.037514 GGGCATCTTAGAGGGTAATACCTAAAT 60.038 40.741 9.58 0.00 42.10 1.40
329 330 6.271624 GGGCATCTTAGAGGGTAATACCTAAA 59.728 42.308 9.58 0.00 42.10 1.85
330 331 5.783875 GGGCATCTTAGAGGGTAATACCTAA 59.216 44.000 9.58 0.00 42.10 2.69
331 332 5.077441 AGGGCATCTTAGAGGGTAATACCTA 59.923 44.000 9.58 0.00 42.10 3.08
332 333 4.140423 AGGGCATCTTAGAGGGTAATACCT 60.140 45.833 9.58 0.00 45.57 3.08
333 334 4.020128 CAGGGCATCTTAGAGGGTAATACC 60.020 50.000 0.00 0.00 37.60 2.73
334 335 4.838986 TCAGGGCATCTTAGAGGGTAATAC 59.161 45.833 0.00 0.00 0.00 1.89
335 336 5.087323 CTCAGGGCATCTTAGAGGGTAATA 58.913 45.833 0.00 0.00 0.00 0.98
336 337 3.906846 CTCAGGGCATCTTAGAGGGTAAT 59.093 47.826 0.00 0.00 0.00 1.89
337 338 3.052109 TCTCAGGGCATCTTAGAGGGTAA 60.052 47.826 0.00 0.00 0.00 2.85
356 357 4.332543 TCGTGCACCAACATATTGAATCTC 59.667 41.667 12.15 0.00 38.15 2.75
378 379 4.923871 ACAACACGTATGTCATTCACTCTC 59.076 41.667 0.60 0.00 38.45 3.20
425 426 2.496070 TGTTACTCGGCAGTTAGCTCAT 59.504 45.455 0.00 0.00 44.79 2.90
426 427 1.890489 TGTTACTCGGCAGTTAGCTCA 59.110 47.619 0.00 0.00 44.79 4.26
429 430 4.178540 TGTAATGTTACTCGGCAGTTAGC 58.821 43.478 4.71 0.00 37.23 3.09
430 431 6.238103 CCATTGTAATGTTACTCGGCAGTTAG 60.238 42.308 4.12 0.00 34.60 2.34
431 432 5.583061 CCATTGTAATGTTACTCGGCAGTTA 59.417 40.000 4.12 0.00 34.60 2.24
438 439 3.064820 GCACCCCATTGTAATGTTACTCG 59.935 47.826 4.12 0.00 34.60 4.18
445 446 1.135431 CACGTGCACCCCATTGTAATG 60.135 52.381 12.15 0.00 36.17 1.90
462 463 5.855395 GGTCAAACTACACTAGAAGTACACG 59.145 44.000 0.00 0.00 0.00 4.49
463 464 5.855395 CGGTCAAACTACACTAGAAGTACAC 59.145 44.000 0.00 0.00 0.00 2.90
471 472 7.041644 TCCAAATTTTCGGTCAAACTACACTAG 60.042 37.037 0.00 0.00 0.00 2.57
472 473 6.766944 TCCAAATTTTCGGTCAAACTACACTA 59.233 34.615 0.00 0.00 0.00 2.74
475 476 6.452494 TTCCAAATTTTCGGTCAAACTACA 57.548 33.333 0.00 0.00 0.00 2.74
480 481 6.349300 TGGAATTTCCAAATTTTCGGTCAAA 58.651 32.000 15.83 0.00 45.00 2.69
502 503 6.489127 TTCAGTACACACCGAAATTAATGG 57.511 37.500 0.00 0.00 0.00 3.16
512 513 5.545658 AGCAAATATTTCAGTACACACCG 57.454 39.130 0.00 0.00 0.00 4.94
513 514 7.865385 TGAAAAGCAAATATTTCAGTACACACC 59.135 33.333 0.00 0.00 39.81 4.16
514 515 8.795786 TGAAAAGCAAATATTTCAGTACACAC 57.204 30.769 0.00 0.00 39.81 3.82
590 593 9.161629 CCAATTTCTTAAAAAGTCAAAAGTGGT 57.838 29.630 9.09 0.00 35.25 4.16
626 632 7.729116 ACTGAAATGTCCACTTGAATTTGATT 58.271 30.769 0.00 0.00 0.00 2.57
643 649 3.278574 TCCCGGCAAATAGACTGAAATG 58.721 45.455 0.00 0.00 0.00 2.32
737 744 1.511464 CGAGTCGCCGTGAGTACAC 60.511 63.158 0.00 0.00 42.88 2.90
752 759 7.538678 ACAAAATTTAAGAAATGCTACAGCGAG 59.461 33.333 0.00 0.00 45.83 5.03
754 761 7.566858 ACAAAATTTAAGAAATGCTACAGCG 57.433 32.000 0.00 0.00 45.83 5.18
763 770 6.754193 TCCAGCGGAACAAAATTTAAGAAAT 58.246 32.000 0.00 0.00 0.00 2.17
800 807 1.190643 TCGAGTATGTGCACCATGGA 58.809 50.000 21.47 0.00 34.86 3.41
802 809 2.892374 TCTTCGAGTATGTGCACCATG 58.108 47.619 15.69 0.00 34.86 3.66
821 828 6.645790 ATCAAAGCCCAGACATTATGATTC 57.354 37.500 0.00 0.00 0.00 2.52
822 829 6.684613 GCAATCAAAGCCCAGACATTATGATT 60.685 38.462 0.00 0.00 36.88 2.57
826 833 4.025360 TGCAATCAAAGCCCAGACATTAT 58.975 39.130 0.00 0.00 0.00 1.28
827 834 3.193267 GTGCAATCAAAGCCCAGACATTA 59.807 43.478 0.00 0.00 0.00 1.90
828 835 2.028748 GTGCAATCAAAGCCCAGACATT 60.029 45.455 0.00 0.00 0.00 2.71
832 867 2.040278 AGTAGTGCAATCAAAGCCCAGA 59.960 45.455 0.00 0.00 0.00 3.86
854 889 1.001406 AGCTATAATCTGCTGTCGGGC 59.999 52.381 0.00 0.00 38.21 6.13
871 906 4.862641 AAATATTGACCTGTACCCAGCT 57.137 40.909 0.00 0.00 37.38 4.24
923 958 1.515954 GGGAAGAACGATCAGCGGA 59.484 57.895 0.00 0.00 46.49 5.54
932 967 0.528684 GAGATGCGAGGGGAAGAACG 60.529 60.000 0.00 0.00 0.00 3.95
944 979 2.964740 TGGAAGTGAGAAAGAGATGCG 58.035 47.619 0.00 0.00 0.00 4.73
945 980 3.876320 GGATGGAAGTGAGAAAGAGATGC 59.124 47.826 0.00 0.00 0.00 3.91
970 1005 0.835941 GGATCAGATCTGTGGCAGGT 59.164 55.000 21.92 0.00 31.51 4.00
974 1009 1.202627 GGACTGGATCAGATCTGTGGC 60.203 57.143 21.92 12.11 35.18 5.01
1007 1042 2.227089 ATCACGAGGCCAAGGACGAC 62.227 60.000 5.01 0.00 0.00 4.34
1063 1098 2.088763 CGACACCAGCAGCAGTACG 61.089 63.158 0.00 0.00 0.00 3.67
1064 1099 2.383527 GCGACACCAGCAGCAGTAC 61.384 63.158 0.00 0.00 34.19 2.73
1108 1146 0.821711 CCTCGCTCCTCTCCCTGTAG 60.822 65.000 0.00 0.00 0.00 2.74
1109 1147 1.227664 CCTCGCTCCTCTCCCTGTA 59.772 63.158 0.00 0.00 0.00 2.74
1210 1248 1.347707 AGGTTGTCCTTGAAGATCGCA 59.652 47.619 0.00 0.00 42.12 5.10
1481 1522 4.510167 AATCTGAGTCAATCGGGGATTT 57.490 40.909 0.00 0.00 34.76 2.17
1487 1528 8.648557 TCTACAAATAAATCTGAGTCAATCGG 57.351 34.615 0.00 0.00 35.40 4.18
1505 1546 9.527157 TCCAGATGACCAATAAAAATCTACAAA 57.473 29.630 0.00 0.00 0.00 2.83
1506 1547 9.527157 TTCCAGATGACCAATAAAAATCTACAA 57.473 29.630 0.00 0.00 0.00 2.41
1507 1548 9.699410 ATTCCAGATGACCAATAAAAATCTACA 57.301 29.630 0.00 0.00 0.00 2.74
1518 1559 5.044919 TGACAACCTATTCCAGATGACCAAT 60.045 40.000 0.00 0.00 0.00 3.16
1530 1571 5.473504 ACTGTTTCCACATGACAACCTATTC 59.526 40.000 0.00 0.00 30.39 1.75
1536 1577 4.743493 ACAAACTGTTTCCACATGACAAC 58.257 39.130 2.13 0.00 30.39 3.32
1547 1588 7.072030 GTGATGTGTCTATGACAAACTGTTTC 58.928 38.462 2.13 0.00 44.49 2.78
1548 1589 6.542005 TGTGATGTGTCTATGACAAACTGTTT 59.458 34.615 0.00 0.00 44.49 2.83
1709 1757 4.320456 CAGCCCACCTCTGTGCGT 62.320 66.667 0.00 0.00 41.35 5.24
1868 1919 1.338105 CGCCTGTGGAGATTGAGACAA 60.338 52.381 0.00 0.00 0.00 3.18
1931 1982 1.741401 CTCATTGCGGAGGCGACAA 60.741 57.895 0.00 0.00 44.10 3.18
1946 1997 3.072038 CCCAGGCATTACAGATCATCTCA 59.928 47.826 0.00 0.00 0.00 3.27
1951 2002 3.806941 GCCCAGGCATTACAGATCA 57.193 52.632 3.12 0.00 41.49 2.92
2193 2244 0.323360 TTACCCATGACAAGGCCAGC 60.323 55.000 5.01 0.00 0.00 4.85
2238 2289 7.365384 GCCATTAGTAACCCTTTTCCTAGTAGT 60.365 40.741 0.00 0.00 0.00 2.73
2239 2290 6.990939 GCCATTAGTAACCCTTTTCCTAGTAG 59.009 42.308 0.00 0.00 0.00 2.57
2240 2291 6.407299 CGCCATTAGTAACCCTTTTCCTAGTA 60.407 42.308 0.00 0.00 0.00 1.82
2241 2292 5.628433 CGCCATTAGTAACCCTTTTCCTAGT 60.628 44.000 0.00 0.00 0.00 2.57
2242 2293 4.814771 CGCCATTAGTAACCCTTTTCCTAG 59.185 45.833 0.00 0.00 0.00 3.02
2243 2294 4.773013 CGCCATTAGTAACCCTTTTCCTA 58.227 43.478 0.00 0.00 0.00 2.94
2244 2295 3.617284 CGCCATTAGTAACCCTTTTCCT 58.383 45.455 0.00 0.00 0.00 3.36
2245 2296 2.098607 GCGCCATTAGTAACCCTTTTCC 59.901 50.000 0.00 0.00 0.00 3.13
2246 2297 2.750712 TGCGCCATTAGTAACCCTTTTC 59.249 45.455 4.18 0.00 0.00 2.29
2247 2298 2.797786 TGCGCCATTAGTAACCCTTTT 58.202 42.857 4.18 0.00 0.00 2.27
2248 2299 2.500392 TGCGCCATTAGTAACCCTTT 57.500 45.000 4.18 0.00 0.00 3.11
2249 2300 2.092646 TGATGCGCCATTAGTAACCCTT 60.093 45.455 4.18 0.00 0.00 3.95
2250 2301 1.488812 TGATGCGCCATTAGTAACCCT 59.511 47.619 4.18 0.00 0.00 4.34
2251 2302 1.873591 CTGATGCGCCATTAGTAACCC 59.126 52.381 4.18 0.00 0.00 4.11
2252 2303 2.561569 ACTGATGCGCCATTAGTAACC 58.438 47.619 4.18 0.00 38.59 2.85
2253 2304 4.616181 AAACTGATGCGCCATTAGTAAC 57.384 40.909 4.18 0.00 39.26 2.50
2254 2305 4.674101 GCAAAACTGATGCGCCATTAGTAA 60.674 41.667 4.18 0.00 39.26 2.24
2255 2306 3.181501 GCAAAACTGATGCGCCATTAGTA 60.182 43.478 4.18 0.00 39.26 1.82
2256 2307 2.415893 GCAAAACTGATGCGCCATTAGT 60.416 45.455 4.18 8.14 41.38 2.24
2257 2308 2.187707 GCAAAACTGATGCGCCATTAG 58.812 47.619 4.18 7.47 34.31 1.73
2258 2309 1.135141 GGCAAAACTGATGCGCCATTA 60.135 47.619 4.18 0.00 44.75 1.90
2259 2310 0.390209 GGCAAAACTGATGCGCCATT 60.390 50.000 4.18 0.00 44.75 3.16
2260 2311 1.216178 GGCAAAACTGATGCGCCAT 59.784 52.632 4.18 0.00 44.75 4.40
2261 2312 0.607762 TAGGCAAAACTGATGCGCCA 60.608 50.000 4.18 0.00 45.47 5.69
2262 2313 0.179163 GTAGGCAAAACTGATGCGCC 60.179 55.000 4.18 0.00 44.75 6.53
2263 2314 0.804989 AGTAGGCAAAACTGATGCGC 59.195 50.000 0.00 0.00 44.75 6.09
2264 2315 4.496341 CCATTAGTAGGCAAAACTGATGCG 60.496 45.833 11.45 4.79 44.75 4.73
2265 2316 4.925068 CCATTAGTAGGCAAAACTGATGC 58.075 43.478 11.45 0.00 38.79 3.91
2277 2328 3.451178 ACCAGTAGTGTGCCATTAGTAGG 59.549 47.826 0.00 0.00 0.00 3.18
2278 2329 4.433615 CACCAGTAGTGTGCCATTAGTAG 58.566 47.826 0.00 0.00 41.93 2.57
2279 2330 4.465632 CACCAGTAGTGTGCCATTAGTA 57.534 45.455 0.00 0.00 41.93 1.82
2280 2331 3.334583 CACCAGTAGTGTGCCATTAGT 57.665 47.619 0.00 0.00 41.93 2.24
2297 2348 0.859232 CGTGATACTAATGGCGCACC 59.141 55.000 10.83 0.00 0.00 5.01
2298 2349 0.232303 GCGTGATACTAATGGCGCAC 59.768 55.000 10.83 0.00 43.62 5.34
2299 2350 0.878523 GGCGTGATACTAATGGCGCA 60.879 55.000 10.83 0.00 45.58 6.09
2300 2351 0.878523 TGGCGTGATACTAATGGCGC 60.879 55.000 0.00 0.00 43.46 6.53
2301 2352 0.859232 GTGGCGTGATACTAATGGCG 59.141 55.000 0.00 0.00 32.00 5.69
2302 2353 2.240493 AGTGGCGTGATACTAATGGC 57.760 50.000 0.00 0.00 0.00 4.40
2303 2354 4.585955 ACTAGTGGCGTGATACTAATGG 57.414 45.455 0.00 0.00 0.00 3.16
2304 2355 8.082852 AGAAATACTAGTGGCGTGATACTAATG 58.917 37.037 5.39 0.00 0.00 1.90
2305 2356 8.179509 AGAAATACTAGTGGCGTGATACTAAT 57.820 34.615 5.39 0.00 0.00 1.73
2306 2357 7.578310 AGAAATACTAGTGGCGTGATACTAA 57.422 36.000 5.39 0.00 0.00 2.24
2307 2358 8.562892 GTTAGAAATACTAGTGGCGTGATACTA 58.437 37.037 5.39 0.00 32.30 1.82
2308 2359 7.284944 AGTTAGAAATACTAGTGGCGTGATACT 59.715 37.037 5.39 0.00 32.30 2.12
2309 2360 7.424001 AGTTAGAAATACTAGTGGCGTGATAC 58.576 38.462 5.39 0.00 32.30 2.24
2310 2361 7.578310 AGTTAGAAATACTAGTGGCGTGATA 57.422 36.000 5.39 0.00 32.30 2.15
2311 2362 6.466885 AGTTAGAAATACTAGTGGCGTGAT 57.533 37.500 5.39 0.00 32.30 3.06
2312 2363 5.909621 AGTTAGAAATACTAGTGGCGTGA 57.090 39.130 5.39 0.00 32.30 4.35
2313 2364 7.169308 CCATTAGTTAGAAATACTAGTGGCGTG 59.831 40.741 5.39 0.00 44.05 5.34
2314 2365 7.208080 CCATTAGTTAGAAATACTAGTGGCGT 58.792 38.462 5.39 0.00 44.05 5.68
2315 2366 7.639162 CCATTAGTTAGAAATACTAGTGGCG 57.361 40.000 5.39 0.00 44.05 5.69
2318 2369 6.700081 TGCGCCATTAGTTAGAAATACTAGTG 59.300 38.462 4.18 0.00 36.28 2.74
2319 2370 6.700520 GTGCGCCATTAGTTAGAAATACTAGT 59.299 38.462 4.18 0.00 32.30 2.57
2320 2371 6.145696 GGTGCGCCATTAGTTAGAAATACTAG 59.854 42.308 12.58 0.00 31.69 2.57
2321 2372 5.987347 GGTGCGCCATTAGTTAGAAATACTA 59.013 40.000 12.58 0.00 34.09 1.82
2322 2373 4.814771 GGTGCGCCATTAGTTAGAAATACT 59.185 41.667 12.58 0.00 34.09 2.12
2323 2374 4.573201 TGGTGCGCCATTAGTTAGAAATAC 59.427 41.667 16.89 0.00 40.46 1.89
2324 2375 4.771903 TGGTGCGCCATTAGTTAGAAATA 58.228 39.130 16.89 0.00 40.46 1.40
2325 2376 3.616219 TGGTGCGCCATTAGTTAGAAAT 58.384 40.909 16.89 0.00 40.46 2.17
2326 2377 3.060736 TGGTGCGCCATTAGTTAGAAA 57.939 42.857 16.89 0.00 40.46 2.52
2327 2378 2.772077 TGGTGCGCCATTAGTTAGAA 57.228 45.000 16.89 0.00 40.46 2.10
2341 2392 1.506309 TAATGGCGCATCGATGGTGC 61.506 55.000 26.00 21.86 40.91 5.01
2342 2393 0.514255 CTAATGGCGCATCGATGGTG 59.486 55.000 26.00 14.32 0.00 4.17
2343 2394 0.106708 ACTAATGGCGCATCGATGGT 59.893 50.000 26.00 10.33 0.00 3.55
2344 2395 2.078849 TACTAATGGCGCATCGATGG 57.921 50.000 26.00 16.77 0.00 3.51
2345 2396 3.305361 CAGATACTAATGGCGCATCGATG 59.695 47.826 21.27 21.27 0.00 3.84
2346 2397 3.515630 CAGATACTAATGGCGCATCGAT 58.484 45.455 10.83 0.00 0.00 3.59
2347 2398 2.926586 GCAGATACTAATGGCGCATCGA 60.927 50.000 10.83 0.00 0.00 3.59
2348 2399 1.391485 GCAGATACTAATGGCGCATCG 59.609 52.381 10.83 0.00 0.00 3.84
2349 2400 1.391485 CGCAGATACTAATGGCGCATC 59.609 52.381 10.83 0.93 41.27 3.91
2350 2401 1.432514 CGCAGATACTAATGGCGCAT 58.567 50.000 10.83 0.00 41.27 4.73
2351 2402 2.899153 CGCAGATACTAATGGCGCA 58.101 52.632 10.83 0.00 41.27 6.09
2354 2405 0.868406 GGTGCGCAGATACTAATGGC 59.132 55.000 12.22 0.00 0.00 4.40
2355 2406 2.238942 TGGTGCGCAGATACTAATGG 57.761 50.000 12.22 0.00 0.00 3.16
2356 2407 2.096069 GCATGGTGCGCAGATACTAATG 60.096 50.000 12.22 8.31 31.71 1.90
2357 2408 2.146342 GCATGGTGCGCAGATACTAAT 58.854 47.619 12.22 0.00 31.71 1.73
2358 2409 1.581934 GCATGGTGCGCAGATACTAA 58.418 50.000 12.22 0.00 31.71 2.24
2359 2410 3.289128 GCATGGTGCGCAGATACTA 57.711 52.632 12.22 0.00 31.71 1.82
2360 2411 4.131376 GCATGGTGCGCAGATACT 57.869 55.556 12.22 0.00 31.71 2.12
2376 2427 3.026630 TCTATACTAATGGCGCACTGC 57.973 47.619 10.83 0.00 45.38 4.40
2377 2428 4.209288 GTGTTCTATACTAATGGCGCACTG 59.791 45.833 10.83 0.00 0.00 3.66
2378 2429 4.369182 GTGTTCTATACTAATGGCGCACT 58.631 43.478 10.83 0.00 0.00 4.40
2379 2430 3.493503 GGTGTTCTATACTAATGGCGCAC 59.506 47.826 10.83 0.00 0.00 5.34
2380 2431 3.133183 TGGTGTTCTATACTAATGGCGCA 59.867 43.478 10.83 0.00 0.00 6.09
2381 2432 3.724374 TGGTGTTCTATACTAATGGCGC 58.276 45.455 0.00 0.00 0.00 6.53
2382 2433 4.152402 GCATGGTGTTCTATACTAATGGCG 59.848 45.833 0.00 0.00 0.00 5.69
2383 2434 4.152402 CGCATGGTGTTCTATACTAATGGC 59.848 45.833 0.00 0.00 0.00 4.40
2384 2435 4.152402 GCGCATGGTGTTCTATACTAATGG 59.848 45.833 0.30 0.00 0.00 3.16
2385 2436 4.152402 GGCGCATGGTGTTCTATACTAATG 59.848 45.833 10.83 0.00 0.00 1.90
2386 2437 4.202315 TGGCGCATGGTGTTCTATACTAAT 60.202 41.667 10.83 0.00 0.00 1.73
2387 2438 3.133183 TGGCGCATGGTGTTCTATACTAA 59.867 43.478 10.83 0.00 0.00 2.24
2388 2439 2.696187 TGGCGCATGGTGTTCTATACTA 59.304 45.455 10.83 0.00 0.00 1.82
2389 2440 1.484653 TGGCGCATGGTGTTCTATACT 59.515 47.619 10.83 0.00 0.00 2.12
2390 2441 1.948104 TGGCGCATGGTGTTCTATAC 58.052 50.000 10.83 0.00 0.00 1.47
2391 2442 2.928801 ATGGCGCATGGTGTTCTATA 57.071 45.000 10.83 0.00 0.00 1.31
2392 2443 2.104792 AGTATGGCGCATGGTGTTCTAT 59.895 45.455 10.83 0.00 0.00 1.98
2393 2444 1.484653 AGTATGGCGCATGGTGTTCTA 59.515 47.619 10.83 0.00 0.00 2.10
2394 2445 0.253044 AGTATGGCGCATGGTGTTCT 59.747 50.000 10.83 0.00 0.00 3.01
2395 2446 1.948104 TAGTATGGCGCATGGTGTTC 58.052 50.000 10.83 0.00 0.00 3.18
2396 2447 2.411628 TTAGTATGGCGCATGGTGTT 57.588 45.000 10.83 0.00 0.00 3.32
2397 2448 2.221169 CATTAGTATGGCGCATGGTGT 58.779 47.619 10.83 0.00 0.00 4.16
2398 2449 1.536766 CCATTAGTATGGCGCATGGTG 59.463 52.381 10.83 0.00 44.64 4.17
2399 2450 1.896220 CCATTAGTATGGCGCATGGT 58.104 50.000 10.83 0.00 44.64 3.55
2408 2459 3.378112 CCCAACAGTGCACCATTAGTATG 59.622 47.826 14.63 4.99 0.00 2.39
2409 2460 3.010138 ACCCAACAGTGCACCATTAGTAT 59.990 43.478 14.63 0.00 0.00 2.12
2410 2461 2.373836 ACCCAACAGTGCACCATTAGTA 59.626 45.455 14.63 0.00 0.00 1.82
2411 2462 1.144913 ACCCAACAGTGCACCATTAGT 59.855 47.619 14.63 6.48 0.00 2.24
2412 2463 1.541147 CACCCAACAGTGCACCATTAG 59.459 52.381 14.63 5.87 0.00 1.73
2413 2464 1.143889 TCACCCAACAGTGCACCATTA 59.856 47.619 14.63 0.00 37.68 1.90
2414 2465 0.106268 TCACCCAACAGTGCACCATT 60.106 50.000 14.63 5.17 37.68 3.16
2415 2466 0.112995 ATCACCCAACAGTGCACCAT 59.887 50.000 14.63 0.00 37.68 3.55
2416 2467 0.822944 CATCACCCAACAGTGCACCA 60.823 55.000 14.63 0.00 37.68 4.17
2417 2468 1.959085 CATCACCCAACAGTGCACC 59.041 57.895 14.63 0.00 37.68 5.01
2418 2469 1.286880 GCATCACCCAACAGTGCAC 59.713 57.895 9.40 9.40 37.68 4.57
2419 2470 2.260154 CGCATCACCCAACAGTGCA 61.260 57.895 0.00 0.00 37.68 4.57
2420 2471 2.562912 CGCATCACCCAACAGTGC 59.437 61.111 0.00 0.00 37.68 4.40
2421 2472 2.562912 GCGCATCACCCAACAGTG 59.437 61.111 0.30 0.00 39.20 3.66
2422 2473 2.672996 GGCGCATCACCCAACAGT 60.673 61.111 10.83 0.00 0.00 3.55
2423 2474 1.597797 AATGGCGCATCACCCAACAG 61.598 55.000 10.83 0.00 34.25 3.16
2424 2475 0.322906 TAATGGCGCATCACCCAACA 60.323 50.000 10.83 0.00 34.25 3.33
2425 2476 0.381801 CTAATGGCGCATCACCCAAC 59.618 55.000 10.83 0.00 34.25 3.77
2426 2477 0.034574 ACTAATGGCGCATCACCCAA 60.035 50.000 10.83 0.00 34.25 4.12
2427 2478 0.833949 TACTAATGGCGCATCACCCA 59.166 50.000 10.83 0.00 35.21 4.51
2428 2479 1.806542 CATACTAATGGCGCATCACCC 59.193 52.381 10.83 0.00 0.00 4.61
2429 2480 2.766313 TCATACTAATGGCGCATCACC 58.234 47.619 10.83 0.00 33.61 4.02
2430 2481 6.668541 ATATTCATACTAATGGCGCATCAC 57.331 37.500 10.83 0.00 33.61 3.06
2431 2482 7.495606 CCTAATATTCATACTAATGGCGCATCA 59.504 37.037 10.83 0.00 33.61 3.07
2432 2483 7.495934 ACCTAATATTCATACTAATGGCGCATC 59.504 37.037 10.83 0.00 33.61 3.91
2433 2484 7.338710 ACCTAATATTCATACTAATGGCGCAT 58.661 34.615 10.83 0.00 33.61 4.73
2434 2485 6.707290 ACCTAATATTCATACTAATGGCGCA 58.293 36.000 10.83 0.00 33.61 6.09
2435 2486 7.611213 AACCTAATATTCATACTAATGGCGC 57.389 36.000 0.00 0.00 33.61 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.