>input_sequence_78060
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--------------------------------------------------------------------------CCTTCC
CGTCGTCCTTGGCCTCGTGATGAGGAGCTCCACGGCTCTCATCGCCGCGGCATCGCTCGTACTGCTGCTGGTGTCGCTGG
CGGCGGCGG---ACATCCAGATACCCTACAGGGAGAGGAGCGAGGAGGAGACGCGGCGGATCTTCGTGGAGTGGAAGGCC
AAGTACGGGAGGAGCTACGACTCCATCCGCGAGGAGGAGCGCCGGTATGCGATCTTCAAGGACAACCTGCTGCGGAACAT
CGATCAGCAGAGCGCCGCCGGGATCCAGCGGCAGCTCAACAATTTCTCCGACCACACCCATGGTGAGGAGTTCAGAGCCT
TTCGCCCA---TGTTACATTCCACTAGATGGCTACGGCGACTGGACGAAGACCAAGGGAGCGTGGATTGCATACATGCTG
TTTGTTTCTACTTTCATTGTTGTTCTTGCATTTTGTAAATTGCATGCATAGTCCTGCGACTAGTATATTTCTGATGGATG
TAAATCCCCGATTGACTCAGATTTA-------------------------------------------------------
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>chr7A_1_TraesCS7A01G537400
AGGTAGCCGAGAGACTGCAACGCAGGTGGGACGCTGCATCCCAGGTAGATGCCACAGTGGCGCACACGGCTAGAGTGACT
ACGGCAGTGGCGGTGATGACGATGGCACTAGCAGTGTCCTCGAAGGACATGCATCCCAGGTCGTCGTCCAGCTTATCCAA
TAGATTTTGGTTTTAGATTAAGTTACTTCCATATAGTTTGCTTGTGATATATCCGAACTGCAATAAAATTTGGAATTTTA
ATAGTTGAAAATAGGGGAGAAATGGGTGATAGCATTTGGTGGTTAGGCATCTACTGACCACACATATGTGTGGACAATGG
GGTCGTCCATTTAGGTATTACCCTCTAAGATGCCCTGAGATTCAATATGTTGGTGCACGAGAGTGAATGACATACGTGTT
GTTGGGAGACAATGTGACGGGGATCATGAGCTAACTGCCGAGTAACATTACAATGGGGTGCACGTGTACTTCTAGTGTAG
TTTGACCGAAAATTTGGAAATTCCATTAATTTCGGTGTGTACTGAAATATTTGCTTTTCAGTCAAAATATTTCATGAATT
ATGGTAGTACCCATGAATTCCG--ATTTTTTTACCACTTTTGAC---TTTTTAAGAAATTGGTTATATCTCAATCAAATT
CAAGTGGACATTTCAGTCTATTTGCCGGGATGAAAACTGAAATCAATAAAATC-CAGTGATTTAATATATTTCTGAAACT
GAAATTCAAAACCATTGTTGTCCGTGTACTCACGGCGACTCGCTGTAGCATTTCTTAAATTTTGTTCCGCTGGATCGATC
CATGCATCCATGGTGCACATACTCGAAGAATCATA----------------------------ATGTCTGGGCTTTGATT
GCACTACTGCCCGACAGCAGATTATAGCTGGGTACAGGTCAATATTTATTTATGGAAGGCATTGATTGCACGATTGCTCC
GCTGATCGTTCTTCCCCTCGCATCTCTTTCTCACTTCCATCCCCACCTGCCACAGATCTGATCCAGTCCCCCCACCTTCC
CGTCGTCCTTGGCCTCGTGATGAGGAGCTCCACGGCTCTCATCGCCGCGGCATCGCTCGTACTGCTGCTGGTGTCGCTGG
CGGCGGCGG---ACATCCAGATACCCTACAGGGAGAGGAGCGAGGAGGAGACGCGGCGGATCTTCGTGGAGTGGAAGGCC
AAGTACGGGAGGAGCTACGACTCCATCCGCGAGGAGGAGCGCCGGTATGCGATCTTCAAGGACAACCTGCTGCGGAACAT
CGATCAGCAGAGCGCCGCCGGGATCCAGCGGCAGCTCAACAATTTCTCCGACCACACCCATGGTGAGGAGTTCAGAGCCT
TTCGCCCA---TGTTACATTCCACTAGATGGCTACGGCGACTGGACGAAGACCAAGGGAGCGTGGATTGCATACATGCTG
TTTGTTTCTACTTTCATTGTTGTTCTTGCATTTTGTAAATTGCATGCATAGTCCTGCGACTAGTATATTTCTGATGGATG
TAAATCCCCGATTGACTCAGATTTATTTGTAGATTTTTATTGGTCATCTGGAATAGGTTGTCATGTGGAAACAGTTTGTC
ATAGACACATCACACTTTTTTTTTGCGGGGTAACGAAGAGCTTTATTCATATGAAGAGGCACCGGCCATGTCAGCCATAA
GGCTGGTGACCAAGAAGCCCGGA-------GGGGAGCCCATCCAACACTCCGTTGCCTCCTTTGTGCATGCTTGTTACGC
ACAGAGGTGGGCTGGAAC---GTTTGCATGTCTCCTTACATGAATTACATCAAAAGAAACTAAAGTAGCAGCTAGCTCCT
CTATATCTAAAAGTAACGGCGCTATAACAGAGCGCGAAGTCCGGCGCGATTTTCAGAGGTTCACTACCTCCAAGCTATTT
GTCTCAATCTCCACAGGCGCAAAGCCACGGAGTGTTGCCACAATCACACCTTCACGTACAGTTGTCGCCTCCGCAATGAG
ATGATCTGTAATGCCTGGGCATGGTTTGCACCAAGCAGCAAGAAAATCTGAAGATGAACGAGCCACACCCCCAATCCCTC
CTCTATGCTCCTGCATAGAAACACCAGCGTCGGTATTGATCTTAATCAACTCTCCCTCTGGTGGTCTCCACCCATGGCCT
GGCAATATACTTGCGTGCTTGCTCGGGAGCTCCAACACCATCAGAGCATCTCTGATCATCTTAAGTGACTGAACTGGTTC
CATGCTGGCCTTGTCATGGGTAACATTGTTGCGCGAGGTCCAGATAGCACTACTAGGAAAAGGGTTACTAATGGCGCATC
AGTTTTGCCTACTAATGGCACACTACTGGTGCGCCATTAGTATCACGCCACTAGTATTTCTAACTAATGGCGCACCATCG
ATGCGCCATTAGTATCTGCGCACCATGCAGTGCGCCATTAGTATAGAACACCATGCGCCATACTAATGGTGCACTGTTGG
GTGATGCGCCATTAGTATGAATATTAGGTTTTTTTTACTTTTTAGAATTTTGCATAGGTTACAAAATATATTATT
>chr7D_331
TTGGGTATC-----------------------------------------------------------------------
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------------------TACCCTCTAAGATGCCCTTAGATTCAATATGTTGGTGCACTAGAGTGAATGACATACGTGTT
GTTGGGAGACAATGTGACGGGGATCGCGAC--AACTGCGGAGTAAAATTACAATGGGGTGCATTTGTACTTTCAGCGTAG
ATTCACCAAAATTTTGGAAATTTCATTAATTTTTTTGCATACTGAAATATTTCCTTTTCAGTCAAAATATTTCATGAATT
ATGGTAGTACCCACGAATTCAAACATTTTTTTGCTACTTCTGATTTTTTTTTAAGAAATTGGTTATATCTCGATCAAATT
CAAGTGGATATTTCAGTCTATTTGCCGGGATGAAAACTGAAATTCAGTTAAATTCAGTGATTTAATATATTTCTGAAACT
GAAATTCAAAACCGTTGTTGTCCATGTATTCACGGCGAGTAGCTGTAGCTTTTCTTAAATTTTGTTCGGCCGGATCGATC
CATGCACCGATGGTGCACATACTCGAACTATCTGCGGAAAGAAATCTGTCAAATACTGGCTTTATGGCTGGACTTTGAAT
GCACTGCTATCGGGCAGCAGATTATCGCTGGGTACAGGTCAA----TATTTATGGAAGGCATTGATTGCACGATTGCGCC
GCTGATTGTTCTTCCCCTTACATCTCTTTCTCACTTCCATCCCCGCCTTCCACAGATCTGATCCACTCCCCCCACCTTCC
CCTCGTCCTTGGCCTCGTCATGAGCACCTCCACGGCTCTCATGGCGGCGGCATCGCTGCTGCTGCTGCTGGTGTCGCTGG
CGGCGGCGGCGGACATCCAGATGGCGCACAGGGAGAGGAGCGAGGAGGAGACGCGGCGGATCTTCGTGGAGTGGAAGGCC
AAGTACGGGAGGAGCTACGACTCCATCCGCGAGGAGGAGCGCCGGTACGCGATCTTCAAGGACAACCTGCTGCGGAACAT
CGATCAGCAGAGCGCCGCCGGGATCGAGCGGCAGCTCAACAATTTCTCCGACCACACCCATGGTGAGGACTTCAGAGCCT
TTCGCGGCGCCTGTTACCTTCCACTAGATGGCTACGGCGACTGGACGAATACCAAGGGAGCGTGGATTGCATACATGCTG
TTTGTTTCTACTTTCGTTGCTGTTCTTGCATGTTGTAAATTGCGTGCATAGTCCTGC-----------------------
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>chr7B_999
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------------------------------------------------------------------------CACCTTCC
CATCGTCCTTGGCCTGGTGATGAGGAGCTCCACGGCTCTCATGGCCGCGGTATCGCTGCTACTGCTGTTGGTGTCGCTGG
CGGCGGCGGCGGACATCCAGATACGGGACAA------GAGCGAGGAGGAGACGCGGCGGATCTTCGTGGAGTG-AAGGCC
AAGTACGGGAGGAGCTACGACTCCATCCGCGAGGAGGAGCGCCGGTACGCGATCTTCAAGGACAACCTGCTGCGGAGCAT
CGACCAGCAGAGCGCCGCCGGGATCCGCTGGCAGCTCAACAATTCCTCCGACCACACCCATGGTGAGGAGTTGAGAGCCT
TTCGCCCA---TGTTACATTCCACTAGATGTCTACGGCGACTGGTCGAAGACCAAGGGAGCATGGATTGCATACATGCTG
TTTGTTTGTAGTTTCATCGTTGTTCTTGCATTTTGTAAATTGCATGCATAGTTCTGCGACTAGTATATTCCTGTTGGATG
T-AATCCTCGATTGACTCAGATTT----GTAGATTTTTGTTGGTCATCTGAAATAGCTTGTCATGTGAGAACAGTTTGTC
ATAGACACATCACA------------------------------------------------------------------
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>chr3B_1576
TTTCTT--------------------------------------------------------------------------
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--------------------TTTTGCGGGATAATGAAGAGCTTTATTCATATGATGAGGCACCAGTCCTGTCCGCCATAA
GGCTAGTGACCAGGAACCCGGGG-------GGG---TCCATCCAACACTCCGTTGCCTCCAGTGTGCAAGCTTTCTTAGC
ACATAGGTGGGCTGGAAT---GTTTGCATGTCTCCTTACATGAACAATATCAAAAGAAAACAAAGTAGCAGCTAGCTCCT
CTATATCTAACAGTAACGACGCTATGACAGAGCGCGAAGTCATGCACGATTTCCAGAGGTTCACCACCTTCAAGCTATCT
GTCTCAATCTCCACACGCGCAAAGCCGTGAAGTGTTGCCACAATCACACCTTCACGTATAGCTAGTGCCTCCGCGACGAG
AGGATCTGTATTGCCTGGGCAAGGTTTACACCAGGCAGCAATAAAACCTGAAGATGAACGAGCAACACCCCCAATCCCTC
CTCTATGCTCCTGCATAGAAATACCAGCGTTGGTGTTGATCTTAGTCAACTCTCCCTCTGGTGGTCTCCACCCATGGCCC
GGTAGTATGCTTGCGTGCTTGGTCGGGAGCTCCAACACCACAAGAGCATCTCTCATCATCTTTAGTGACTGAACCGGATC
CATACTGGCCCTGTCGTGGGTGTCATTGTTGCGAGATGTACAGAT-----------------------------------
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>chr5A_1576
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---------------TTTTTTTTTGCAGGGAATTGAGGAGCTTTATTCATACGATGATCCACCGGCCATGTCAGCCATAA
GGCTGGTGACCAGGAACCCC--------GGGGGGAGTCCATCCAACACTCTGTCACCTCCAATGTGCATGCATGTTTTGC
ACATAGGTGGGCAGGGAC---ATTGGCATGTCTCCTAACATGAAAAATATCAAAATAAGTAAAGTGAGCAACAAGCTCCT
CAATATCTAAAAGTACCGGCGCTATTACAGAGCGCGAATTCCGGCGCGATTTCCAGAGGTTGACCACTTCCAAACAGTCT
GTTTCAATTTCGACCCGCGCAAAACCACGAAGCATTGCCACCACCACACCCTCACGCACCGCAGTCGCCTCTGCCACCAG
AGGGTCTGTGATACCTGGACACGGTTTGCACCAAGCTGTGATAAAAGTCGAAGATGATCTGGCCACACCCCCAACACCTC
CTCTATGCTCGAGCATAGCAACACCAGCATCTGTATTAATTTTGATGCACTCGCCCTCCGGCGGTCTCCACCCGTGCCCT
GGCA----------------------------------------------------------------------------
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>chr3A_1577
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----------------TTTTTTTTGCGGGATAACGAAGAGCTTTATTCATATGAAGAGGCACCGGCCATGTCATCCATAA
GGCTGGTGACCAGAAACCCGGGAGGGTGGGGGGGAGCCCATCCAACACTCCGTTGCCTCCTTTGTGCATGCTTGTTGCGC
ATAGAGGTGGGCTGGAACGCGGTTTGCATGTCTCCTTACATGAACTACATCAAAAGAAACTAAAGTAGCAGCTAGCTCCT
CTATATCTAAAAGTAACGGCGCTATAACAGAGCGCGAAGTCCGGCGTGATTTCCGGAGGTTCACCACCTCCAAGCTATCT
ATCTCAATCTCCACACGCGCAAAACCACGGAGTGTTGCCACAATCACACCTTCACGTACAGCTGTCGCCTCCGCAACGAG
AGGATCTGTAATGCCTGGGCATGGTTTGCACCAAGCAGCAAGAAAACCTGAAGATGGACGAGCCACACCCCCAATCCCTC
CTCTATGCTCCTGCATAGAAATACCAGCGCCGGTGTTGATCTTAACCAACTCTCCCCCTGGTGGTCTCCACCCATGGCCT
GGCAATATACTTGTGTGCTTGCTCTGGAGCTCCAACACCATTAGAGCATCTCTGATCATCTTAAGTGACTGAACTGGTTC
CATACTGGCCTTGTCATGGGTAATATTGTTGCGTGAGGTCCAGATAGC--------------------------------
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>chr7D_1578
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-----------------TTTTTTTGCATGATAACGAAGAGCTTTATTCATATGAAGAGGCACCGGCCATGTCAGCCATAA
GGCTGGTGACCAGAAAACCC--------GGGGGGAGCCCATCCAACACTCCGTTGCCTCCTTTGTGCATGCTTGTTGCGC
ACAGAGGTGGGCTGGAAC---GTTTGCATGTCTCCTTACATGAACTACATCAAAATAAACTAAAGTAGCAGCTAGCTCCT
CTATATCTAAAAGTAACGGCGCTATAACAGAGCGCGAAGTCCGGCGCGATTTCCAGAGGTTCACTACCTCCAAGCTATCT
GTCTCAATCTCCACACGCGCAAAGCCACGGAGTGTTGCCACAATCACACCTTCACGTATAGCTGTCGCCTCCGCAGCGAG
AGGATCTGTAGTGCTTGTGCATGGTTTGCACCAAGCAGCAAGAAAATCTGAAGATGAACGAGCCACACCCCCAATCCCTC
CTCTATGCTCCTGCATAGAAATACCAGCGTCGGTATTGATCTTAATCAACTCTCCCTCTGGTGGTCTCCACCCATGGCCT
GGCAATATACTTGCGTGCTTGCTCGGGAGCTCCAACACCATAAGAGCATCTCTGATCATCTTAAGTGACTGAACTGGTTC
CATAGTGGCCTTGTCATGGGTAATATTGTTGCGCGAGGTCCAGATAGC--------------------------------
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>chr2D_1727
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-------------GGAAC---GTTTGCATGTCTCCTTACATGAACTACATCAAAATAGAACAAAGTAGCAGCTAGCTCCT
CTATATCTAATAGTAACAGCGCTATAACAGAGCGCGAAGTCCGGCGCGATTTCCAGAGGTTCACCACCTCCAAGCTATCT
GTCTCAAGCTCCACACGCGCAAAGCCACGAAGTGTTGCCACAATCACACCTTCATGTACATCTATTGCCTTCGCAACGAG
AGGATCTGTAATGCCTGGGCATGGTTTGCACCAAGCAGCAAGAAAACCTGAAGATGAACGAGCCACACCCCCAATTCCTC
CTCTATGCTCCTGCATAGAAATACTAGTGTCAGTGTTGATTTTAATCAACTCTCCCTCTGGTGGTCTCCACCCATGGCCC
GACAGTATGCTTGCATGCTTGGTCGGGAGCTCCAACACCATAAGAGCATCTATGATCATCTTGAGTGACTGAACTGGTTC
CCTACTGGCCTTGTCATGGGTAATATTGTTGCGCGAAGTCCAGAT-----------------------------------
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>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS------------------S---------------------S---------------------
-------------------------SS--SSS------S------S----------------SS-------SS--S----
S--S---S---S----------S---------SSS--SS-------------S---------------------------
-------------S------SS----------S-S----S---S---------------------------S--------
--------S----------------------------------SS-SSS--SS---------------------------
-------------S---------S----S---------S-S--------S-----------------S--S---------
------S-S------------------SS---SSS-------------------------------S----S------S-
-----S--SS-S-S-----------S----------------SSSS-------------------------------S--
------S-----------SS------------------------S---S----------------S--------------
-S----------------------------------------S--------------SS---------------------
-------------------------SS-----------------------------------------------------
-----------------------------------------------S--------------------------------
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---------------------------------------------------------------------S---S------
-S-----S----------------SSSS----------S-----------S-----S----------SS-----------
--------------S-----------------------------------------------------------------
------------S---S-----------------------------------------------------------S---
--------------------------------------------S-----------------------------------
----------------------------------------------------S-------------------------S-
---------------S---------------------------------------------S--------------S---
-S------------------------------------------------------------------------------
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-----------------------------------------S--------------------------------------
---S--------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_110
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----------CGGTGATGACGATGGCACTA--------------------------------------------------
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>reverse_1146
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-------------------------CTACAGGGAGAGGAGCGAGG-----------------------------------
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>forward_431
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-----------ATGTGACGGGGATCATGAGC-------------------------------------------------
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>reverse_2477
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----------------------------------------------------------------------------TTGG
GTGATGCGCCATTAGT-----------------------------------------------------------
