Multiple sequence alignment - TraesCS7A01G445500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G445500 chr7A 100.000 2653 0 0 1 2653 640544765 640542113 0.000000e+00 4900.0
1 TraesCS7A01G445500 chr7A 95.059 506 14 2 1802 2296 507687911 507687406 0.000000e+00 785.0
2 TraesCS7A01G445500 chr7A 95.391 499 12 2 1809 2297 682200205 682200702 0.000000e+00 784.0
3 TraesCS7A01G445500 chr7A 81.743 241 33 4 2057 2297 663962781 663963010 9.690000e-45 191.0
4 TraesCS7A01G445500 chr7A 85.465 172 20 5 1809 1976 602095848 602095678 9.760000e-40 174.0
5 TraesCS7A01G445500 chr7A 100.000 34 0 0 2297 2330 640542501 640542468 2.200000e-06 63.9
6 TraesCS7A01G445500 chr7A 95.000 40 1 1 2297 2336 507687437 507687399 7.930000e-06 62.1
7 TraesCS7A01G445500 chr7A 94.872 39 2 0 1962 2000 663962518 663962556 7.930000e-06 62.1
8 TraesCS7A01G445500 chr7D 91.696 1409 92 12 369 1775 553847337 553848722 0.000000e+00 1930.0
9 TraesCS7A01G445500 chr7D 94.406 143 7 1 2511 2653 553848713 553848854 4.450000e-53 219.0
10 TraesCS7A01G445500 chr7B 93.690 1252 68 10 528 1775 600833216 600831972 0.000000e+00 1864.0
11 TraesCS7A01G445500 chr7B 93.136 1151 66 7 369 1518 600839557 600838419 0.000000e+00 1676.0
12 TraesCS7A01G445500 chr7B 92.308 234 16 2 1543 1775 600838429 600838197 5.470000e-87 331.0
13 TraesCS7A01G445500 chr7B 91.342 231 15 2 16 241 600839791 600839561 7.130000e-81 311.0
14 TraesCS7A01G445500 chr7B 92.228 193 15 0 2329 2521 376674532 376674724 9.360000e-70 274.0
15 TraesCS7A01G445500 chr7B 88.571 105 10 1 2511 2615 600838206 600838104 2.770000e-25 126.0
16 TraesCS7A01G445500 chr5A 95.792 499 11 1 1809 2297 606486189 606485691 0.000000e+00 797.0
17 TraesCS7A01G445500 chr5A 94.589 499 14 2 1809 2297 606178556 606178061 0.000000e+00 760.0
18 TraesCS7A01G445500 chr5A 96.124 129 4 1 241 368 647032192 647032320 2.680000e-50 209.0
19 TraesCS7A01G445500 chr5A 81.933 238 31 5 2060 2297 669740537 669740312 9.690000e-45 191.0
20 TraesCS7A01G445500 chr5A 100.000 33 0 0 2297 2329 606178093 606178061 7.930000e-06 62.1
21 TraesCS7A01G445500 chr5A 94.737 38 2 0 1962 1999 669740803 669740766 2.850000e-05 60.2
22 TraesCS7A01G445500 chr5A 100.000 31 0 0 2299 2329 606485721 606485691 1.030000e-04 58.4
23 TraesCS7A01G445500 chr2A 95.400 500 11 2 1809 2298 750326368 750325871 0.000000e+00 785.0
24 TraesCS7A01G445500 chr2A 92.593 189 14 0 2329 2517 381721323 381721511 3.370000e-69 272.0
25 TraesCS7A01G445500 chr2A 100.000 34 0 0 2297 2330 750325904 750325871 2.200000e-06 63.9
26 TraesCS7A01G445500 chrUn 83.073 703 84 20 843 1534 103351807 103352485 8.120000e-170 606.0
27 TraesCS7A01G445500 chrUn 97.674 129 2 1 241 368 229491471 229491599 1.240000e-53 220.0
28 TraesCS7A01G445500 chrUn 97.674 129 2 1 241 368 296251207 296251079 1.240000e-53 220.0
29 TraesCS7A01G445500 chr6A 81.879 745 100 20 843 1575 29342237 29341516 1.760000e-166 595.0
30 TraesCS7A01G445500 chr5D 93.617 188 12 0 2329 2516 23838100 23837913 5.590000e-72 281.0
31 TraesCS7A01G445500 chr5D 92.670 191 14 0 2329 2519 549323135 549323325 2.600000e-70 276.0
32 TraesCS7A01G445500 chr5D 96.124 129 4 1 241 368 324470935 324470807 2.680000e-50 209.0
33 TraesCS7A01G445500 chr2D 93.085 188 13 0 2329 2516 284559988 284560175 2.600000e-70 276.0
34 TraesCS7A01G445500 chr2D 93.122 189 11 2 2329 2517 315063441 315063627 2.600000e-70 276.0
35 TraesCS7A01G445500 chr2D 91.837 196 13 2 2326 2519 515140767 515140573 1.210000e-68 270.0
36 TraesCS7A01G445500 chr2D 92.896 183 13 0 2329 2511 643768023 643768205 1.570000e-67 267.0
37 TraesCS7A01G445500 chr2D 97.674 129 2 1 241 368 382488841 382488969 1.240000e-53 220.0
38 TraesCS7A01G445500 chr2D 96.124 129 4 1 241 368 322921826 322921698 2.680000e-50 209.0
39 TraesCS7A01G445500 chr1D 92.670 191 14 0 2329 2519 442835873 442835683 2.600000e-70 276.0
40 TraesCS7A01G445500 chr1A 86.977 215 27 1 493 707 536969888 536969675 9.490000e-60 241.0
41 TraesCS7A01G445500 chr6D 97.674 129 2 1 241 368 153923449 153923321 1.240000e-53 220.0
42 TraesCS7A01G445500 chr6D 96.124 129 4 1 241 368 57923767 57923895 2.680000e-50 209.0
43 TraesCS7A01G445500 chr4D 97.674 129 2 1 241 368 123442933 123442805 1.240000e-53 220.0
44 TraesCS7A01G445500 chr3D 87.719 171 20 1 2128 2297 287479956 287479786 5.790000e-47 198.0
45 TraesCS7A01G445500 chr3D 91.489 47 1 2 1954 1997 287480209 287480163 7.930000e-06 62.1
46 TraesCS7A01G445500 chr3B 81.933 238 29 9 2060 2296 380681854 380681630 3.490000e-44 189.0
47 TraesCS7A01G445500 chr3A 91.304 46 1 2 1954 1997 377146422 377146378 2.850000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G445500 chr7A 640542113 640544765 2652 True 2481.95 4900 100.00000 1 2653 2 chr7A.!!$R3 2652
1 TraesCS7A01G445500 chr7A 507687399 507687911 512 True 423.55 785 95.02950 1802 2336 2 chr7A.!!$R2 534
2 TraesCS7A01G445500 chr7D 553847337 553848854 1517 False 1074.50 1930 93.05100 369 2653 2 chr7D.!!$F1 2284
3 TraesCS7A01G445500 chr7B 600831972 600833216 1244 True 1864.00 1864 93.69000 528 1775 1 chr7B.!!$R1 1247
4 TraesCS7A01G445500 chr7B 600838104 600839791 1687 True 611.00 1676 91.33925 16 2615 4 chr7B.!!$R2 2599
5 TraesCS7A01G445500 chrUn 103351807 103352485 678 False 606.00 606 83.07300 843 1534 1 chrUn.!!$F1 691
6 TraesCS7A01G445500 chr6A 29341516 29342237 721 True 595.00 595 81.87900 843 1575 1 chr6A.!!$R1 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
668 674 0.033366 TGGGTCCGCATGTCATATCG 59.967 55.0 0.0 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 1822 0.03254 GGTACGGCCCTGGTTATACG 59.967 60.0 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.133003 CGAATGTCAACACCCTAGATCCT 59.867 47.826 0.00 0.00 0.00 3.24
52 53 4.446371 GAATGTCAACACCCTAGATCCTG 58.554 47.826 0.00 0.00 0.00 3.86
54 55 4.055710 TGTCAACACCCTAGATCCTGTA 57.944 45.455 0.00 0.00 0.00 2.74
58 59 2.933573 ACACCCTAGATCCTGTAGACG 58.066 52.381 0.00 0.00 0.00 4.18
93 94 5.351740 TGAGACATCACTAACTCGTCTACAG 59.648 44.000 0.00 0.00 37.08 2.74
106 107 6.868622 ACTCGTCTACAGAATTAGCAAATCT 58.131 36.000 0.00 0.00 0.00 2.40
156 157 5.125900 TCATGAAATTGCAACTATGTCAGGG 59.874 40.000 0.00 0.00 0.00 4.45
157 158 4.661222 TGAAATTGCAACTATGTCAGGGA 58.339 39.130 0.00 0.00 0.00 4.20
187 193 4.578913 CACTACCGTGCCAGTGAG 57.421 61.111 0.00 0.00 43.99 3.51
190 196 0.826256 ACTACCGTGCCAGTGAGTCA 60.826 55.000 0.00 0.00 0.00 3.41
191 197 0.388649 CTACCGTGCCAGTGAGTCAC 60.389 60.000 15.78 15.78 34.10 3.67
241 247 3.451178 GTCCCAAGGAATGTAGTCTAGCA 59.549 47.826 0.00 0.00 31.38 3.49
242 248 4.081087 GTCCCAAGGAATGTAGTCTAGCAA 60.081 45.833 0.00 0.00 31.38 3.91
244 250 4.446371 CCAAGGAATGTAGTCTAGCAAGG 58.554 47.826 0.00 0.00 0.00 3.61
245 251 4.162320 CCAAGGAATGTAGTCTAGCAAGGA 59.838 45.833 0.00 0.00 0.00 3.36
249 255 5.104735 AGGAATGTAGTCTAGCAAGGAAAGG 60.105 44.000 0.00 0.00 0.00 3.11
250 256 5.104900 GGAATGTAGTCTAGCAAGGAAAGGA 60.105 44.000 0.00 0.00 0.00 3.36
251 257 6.374417 AATGTAGTCTAGCAAGGAAAGGAA 57.626 37.500 0.00 0.00 0.00 3.36
252 258 6.567602 ATGTAGTCTAGCAAGGAAAGGAAT 57.432 37.500 0.00 0.00 0.00 3.01
253 259 5.734720 TGTAGTCTAGCAAGGAAAGGAATG 58.265 41.667 0.00 0.00 0.00 2.67
254 260 5.483937 TGTAGTCTAGCAAGGAAAGGAATGA 59.516 40.000 0.00 0.00 0.00 2.57
255 261 5.096443 AGTCTAGCAAGGAAAGGAATGAG 57.904 43.478 0.00 0.00 0.00 2.90
256 262 3.625313 GTCTAGCAAGGAAAGGAATGAGC 59.375 47.826 0.00 0.00 0.00 4.26
257 263 1.457346 AGCAAGGAAAGGAATGAGCG 58.543 50.000 0.00 0.00 0.00 5.03
258 264 1.003580 AGCAAGGAAAGGAATGAGCGA 59.996 47.619 0.00 0.00 0.00 4.93
259 265 1.812571 GCAAGGAAAGGAATGAGCGAA 59.187 47.619 0.00 0.00 0.00 4.70
260 266 2.228822 GCAAGGAAAGGAATGAGCGAAA 59.771 45.455 0.00 0.00 0.00 3.46
261 267 3.305335 GCAAGGAAAGGAATGAGCGAAAA 60.305 43.478 0.00 0.00 0.00 2.29
262 268 4.479619 CAAGGAAAGGAATGAGCGAAAAG 58.520 43.478 0.00 0.00 0.00 2.27
263 269 4.021102 AGGAAAGGAATGAGCGAAAAGA 57.979 40.909 0.00 0.00 0.00 2.52
264 270 4.593956 AGGAAAGGAATGAGCGAAAAGAT 58.406 39.130 0.00 0.00 0.00 2.40
265 271 5.745227 AGGAAAGGAATGAGCGAAAAGATA 58.255 37.500 0.00 0.00 0.00 1.98
266 272 5.586643 AGGAAAGGAATGAGCGAAAAGATAC 59.413 40.000 0.00 0.00 0.00 2.24
267 273 5.354234 GGAAAGGAATGAGCGAAAAGATACA 59.646 40.000 0.00 0.00 0.00 2.29
268 274 6.038714 GGAAAGGAATGAGCGAAAAGATACAT 59.961 38.462 0.00 0.00 0.00 2.29
269 275 7.396540 AAAGGAATGAGCGAAAAGATACATT 57.603 32.000 0.00 0.00 0.00 2.71
270 276 8.506168 AAAGGAATGAGCGAAAAGATACATTA 57.494 30.769 0.00 0.00 0.00 1.90
271 277 8.506168 AAGGAATGAGCGAAAAGATACATTAA 57.494 30.769 0.00 0.00 0.00 1.40
272 278 8.682936 AGGAATGAGCGAAAAGATACATTAAT 57.317 30.769 0.00 0.00 0.00 1.40
273 279 8.562892 AGGAATGAGCGAAAAGATACATTAATG 58.437 33.333 14.01 14.01 0.00 1.90
274 280 8.345565 GGAATGAGCGAAAAGATACATTAATGT 58.654 33.333 23.80 23.80 44.48 2.71
275 281 9.722056 GAATGAGCGAAAAGATACATTAATGTT 57.278 29.630 25.31 13.48 41.97 2.71
277 283 9.722056 ATGAGCGAAAAGATACATTAATGTTTC 57.278 29.630 25.31 24.38 41.97 2.78
278 284 8.181573 TGAGCGAAAAGATACATTAATGTTTCC 58.818 33.333 25.31 14.48 41.97 3.13
279 285 8.050778 AGCGAAAAGATACATTAATGTTTCCA 57.949 30.769 25.31 8.74 41.97 3.53
280 286 7.968405 AGCGAAAAGATACATTAATGTTTCCAC 59.032 33.333 25.31 14.87 41.97 4.02
281 287 7.220108 GCGAAAAGATACATTAATGTTTCCACC 59.780 37.037 25.31 14.25 41.97 4.61
282 288 8.458843 CGAAAAGATACATTAATGTTTCCACCT 58.541 33.333 25.31 11.82 41.97 4.00
285 291 9.975218 AAAGATACATTAATGTTTCCACCTACT 57.025 29.630 25.31 7.48 41.97 2.57
286 292 9.614792 AAGATACATTAATGTTTCCACCTACTC 57.385 33.333 25.31 3.05 41.97 2.59
287 293 8.993424 AGATACATTAATGTTTCCACCTACTCT 58.007 33.333 25.31 5.14 41.97 3.24
288 294 9.262358 GATACATTAATGTTTCCACCTACTCTC 57.738 37.037 25.31 0.00 41.97 3.20
289 295 7.259088 ACATTAATGTTTCCACCTACTCTCT 57.741 36.000 15.47 0.00 37.90 3.10
290 296 7.690256 ACATTAATGTTTCCACCTACTCTCTT 58.310 34.615 15.47 0.00 37.90 2.85
291 297 8.164070 ACATTAATGTTTCCACCTACTCTCTTT 58.836 33.333 15.47 0.00 37.90 2.52
292 298 9.014297 CATTAATGTTTCCACCTACTCTCTTTT 57.986 33.333 7.32 0.00 0.00 2.27
296 302 9.892130 AATGTTTCCACCTACTCTCTTTTATAG 57.108 33.333 0.00 0.00 0.00 1.31
297 303 7.328737 TGTTTCCACCTACTCTCTTTTATAGC 58.671 38.462 0.00 0.00 0.00 2.97
298 304 7.038587 TGTTTCCACCTACTCTCTTTTATAGCA 60.039 37.037 0.00 0.00 0.00 3.49
299 305 6.466885 TCCACCTACTCTCTTTTATAGCAC 57.533 41.667 0.00 0.00 0.00 4.40
300 306 5.955959 TCCACCTACTCTCTTTTATAGCACA 59.044 40.000 0.00 0.00 0.00 4.57
301 307 6.096987 TCCACCTACTCTCTTTTATAGCACAG 59.903 42.308 0.00 0.00 0.00 3.66
302 308 6.276847 CACCTACTCTCTTTTATAGCACAGG 58.723 44.000 0.00 0.00 0.00 4.00
303 309 5.364157 ACCTACTCTCTTTTATAGCACAGGG 59.636 44.000 0.00 0.00 0.00 4.45
304 310 4.762289 ACTCTCTTTTATAGCACAGGGG 57.238 45.455 0.00 0.00 0.00 4.79
305 311 4.104831 ACTCTCTTTTATAGCACAGGGGT 58.895 43.478 0.00 0.00 0.00 4.95
320 326 4.296056 ACAGGGGTGAGTTAAGTATAGGG 58.704 47.826 0.00 0.00 0.00 3.53
321 327 4.015918 ACAGGGGTGAGTTAAGTATAGGGA 60.016 45.833 0.00 0.00 0.00 4.20
322 328 5.155905 CAGGGGTGAGTTAAGTATAGGGAT 58.844 45.833 0.00 0.00 0.00 3.85
323 329 5.012148 CAGGGGTGAGTTAAGTATAGGGATG 59.988 48.000 0.00 0.00 0.00 3.51
324 330 5.102783 AGGGGTGAGTTAAGTATAGGGATGA 60.103 44.000 0.00 0.00 0.00 2.92
325 331 5.785940 GGGGTGAGTTAAGTATAGGGATGAT 59.214 44.000 0.00 0.00 0.00 2.45
326 332 6.070710 GGGGTGAGTTAAGTATAGGGATGATC 60.071 46.154 0.00 0.00 0.00 2.92
327 333 6.070710 GGGTGAGTTAAGTATAGGGATGATCC 60.071 46.154 1.94 1.94 35.23 3.36
328 334 6.497259 GGTGAGTTAAGTATAGGGATGATCCA 59.503 42.308 14.36 0.00 38.64 3.41
329 335 7.379750 GTGAGTTAAGTATAGGGATGATCCAC 58.620 42.308 14.36 2.56 38.64 4.02
330 336 7.233757 GTGAGTTAAGTATAGGGATGATCCACT 59.766 40.741 14.36 10.37 38.64 4.00
331 337 7.451877 TGAGTTAAGTATAGGGATGATCCACTC 59.548 40.741 14.36 13.54 38.64 3.51
332 338 6.434652 AGTTAAGTATAGGGATGATCCACTCG 59.565 42.308 14.36 0.00 38.64 4.18
333 339 4.390129 AGTATAGGGATGATCCACTCGT 57.610 45.455 14.36 3.98 38.64 4.18
334 340 4.337145 AGTATAGGGATGATCCACTCGTC 58.663 47.826 14.36 0.00 38.64 4.20
335 341 1.605753 TAGGGATGATCCACTCGTCG 58.394 55.000 14.36 0.00 40.30 5.12
336 342 0.395862 AGGGATGATCCACTCGTCGT 60.396 55.000 14.36 0.00 40.30 4.34
337 343 1.133884 AGGGATGATCCACTCGTCGTA 60.134 52.381 14.36 0.00 40.30 3.43
338 344 1.679680 GGGATGATCCACTCGTCGTAA 59.320 52.381 14.36 0.00 40.30 3.18
339 345 2.100252 GGGATGATCCACTCGTCGTAAA 59.900 50.000 14.36 0.00 40.30 2.01
340 346 3.243771 GGGATGATCCACTCGTCGTAAAT 60.244 47.826 14.36 0.00 40.30 1.40
341 347 4.022589 GGGATGATCCACTCGTCGTAAATA 60.023 45.833 14.36 0.00 40.30 1.40
342 348 5.154932 GGATGATCCACTCGTCGTAAATAG 58.845 45.833 6.60 0.00 40.30 1.73
343 349 3.961182 TGATCCACTCGTCGTAAATAGC 58.039 45.455 0.00 0.00 0.00 2.97
344 350 2.463553 TCCACTCGTCGTAAATAGCG 57.536 50.000 0.00 0.00 0.00 4.26
345 351 1.064505 TCCACTCGTCGTAAATAGCGG 59.935 52.381 0.00 0.00 0.00 5.52
346 352 0.844503 CACTCGTCGTAAATAGCGGC 59.155 55.000 0.00 0.00 0.00 6.53
347 353 0.452987 ACTCGTCGTAAATAGCGGCA 59.547 50.000 1.45 0.00 33.04 5.69
348 354 0.844503 CTCGTCGTAAATAGCGGCAC 59.155 55.000 1.45 0.00 33.04 5.01
383 389 6.808321 ATCTACATACAAGTGGCTAGGAAA 57.192 37.500 0.00 0.00 0.00 3.13
417 423 5.088739 GTCTTATTTTTGTGACGATGCCTG 58.911 41.667 0.00 0.00 0.00 4.85
420 426 3.791973 TTTTTGTGACGATGCCTGTTT 57.208 38.095 0.00 0.00 0.00 2.83
464 470 7.663043 TTCCTTTGTACACCCTTTGTAATTT 57.337 32.000 0.00 0.00 42.56 1.82
499 505 4.377897 AGTCTGTTTTAAACCCTCGTCAG 58.622 43.478 5.32 0.00 0.00 3.51
501 507 4.210746 GTCTGTTTTAAACCCTCGTCAGAC 59.789 45.833 5.32 6.08 41.85 3.51
573 579 4.547671 TCCTGGTCTATCTCAACCCTAAG 58.452 47.826 0.00 0.00 34.47 2.18
586 592 1.272872 ACCCTAAGCCGGTCTTGACTA 60.273 52.381 17.89 1.35 36.25 2.59
587 593 1.829222 CCCTAAGCCGGTCTTGACTAA 59.171 52.381 17.89 1.05 36.25 2.24
595 601 3.689649 GCCGGTCTTGACTAATTTGTCAT 59.310 43.478 20.78 0.00 45.03 3.06
614 620 8.985315 TTGTCATGCTAGGAAAATAATGATCT 57.015 30.769 0.00 0.00 0.00 2.75
639 645 2.139917 CGGGATCACTCTCTACTCTCG 58.860 57.143 0.00 0.00 0.00 4.04
668 674 0.033366 TGGGTCCGCATGTCATATCG 59.967 55.000 0.00 0.00 0.00 2.92
731 738 6.294731 GCTGAAAATAAATGGTGACTGGAACT 60.295 38.462 0.00 0.00 0.00 3.01
770 777 2.230508 ACGGCTTAGTCGAAATCAGTGA 59.769 45.455 14.77 0.00 33.65 3.41
981 994 8.806146 ACCATAAATCCAGTATAAAATGGCATC 58.194 33.333 0.00 0.00 36.47 3.91
1034 1048 2.148916 AAGCAACGATCGACAAGTCA 57.851 45.000 24.34 0.00 0.00 3.41
1039 1053 2.993220 CAACGATCGACAAGTCATTCCA 59.007 45.455 24.34 0.00 0.00 3.53
1075 1089 6.799827 AGTATCTAAGATGAGGACTAGCCAT 58.200 40.000 6.07 0.00 40.02 4.40
1129 1143 3.091545 AGCATCAGGTACCCATTTGTTG 58.908 45.455 8.74 6.91 0.00 3.33
1137 1151 5.123820 CAGGTACCCATTTGTTGATGTACTG 59.876 44.000 8.74 0.00 35.46 2.74
1142 1156 3.913763 CCATTTGTTGATGTACTGCGTTG 59.086 43.478 0.00 0.00 0.00 4.10
1152 1166 4.300189 TGTACTGCGTTGCTTCAAAATT 57.700 36.364 0.00 0.00 0.00 1.82
1220 1235 3.753815 TGGTGAGATTTTGCAGATGTGA 58.246 40.909 0.00 0.00 0.00 3.58
1227 1242 6.036408 TGAGATTTTGCAGATGTGATAACGAG 59.964 38.462 0.00 0.00 0.00 4.18
1422 1440 8.745590 TCCCAAAAATGGAAACTAATTAGCTAC 58.254 33.333 12.54 1.64 0.00 3.58
1432 1450 7.095187 GGAAACTAATTAGCTACGATTGGATGG 60.095 40.741 12.54 0.00 0.00 3.51
1436 1454 4.882842 TTAGCTACGATTGGATGGCATA 57.117 40.909 0.00 0.00 0.00 3.14
1691 1711 5.891451 AGCTTTGCTTTTAGACGAAAAACT 58.109 33.333 0.00 0.00 36.59 2.66
1692 1712 7.023197 AGCTTTGCTTTTAGACGAAAAACTA 57.977 32.000 0.00 0.00 36.59 2.24
1719 1741 4.657039 TCCTTGGGGTAGTACATTGTATCC 59.343 45.833 2.06 3.94 0.00 2.59
1738 1760 2.158608 TCCGCTCATCAGATGGAGAGTA 60.159 50.000 10.67 0.00 32.87 2.59
1771 1793 4.478843 TGTGACTCGTGAGTTGTACTAC 57.521 45.455 3.69 0.00 42.66 2.73
1775 1797 4.692625 TGACTCGTGAGTTGTACTACTACC 59.307 45.833 10.02 3.33 42.66 3.18
1776 1798 4.904241 ACTCGTGAGTTGTACTACTACCT 58.096 43.478 10.02 0.00 38.83 3.08
1777 1799 4.934602 ACTCGTGAGTTGTACTACTACCTC 59.065 45.833 10.02 0.00 38.83 3.85
1778 1800 4.256920 TCGTGAGTTGTACTACTACCTCC 58.743 47.826 10.02 0.00 0.00 4.30
1779 1801 3.063180 CGTGAGTTGTACTACTACCTCCG 59.937 52.174 10.02 5.01 0.00 4.63
1780 1802 4.006319 GTGAGTTGTACTACTACCTCCGT 58.994 47.826 10.02 0.00 0.00 4.69
1781 1803 4.457257 GTGAGTTGTACTACTACCTCCGTT 59.543 45.833 10.02 0.00 0.00 4.44
1782 1804 5.048434 GTGAGTTGTACTACTACCTCCGTTT 60.048 44.000 10.02 0.00 0.00 3.60
1783 1805 6.149474 GTGAGTTGTACTACTACCTCCGTTTA 59.851 42.308 10.02 0.00 0.00 2.01
1784 1806 6.372659 TGAGTTGTACTACTACCTCCGTTTAG 59.627 42.308 10.02 0.00 0.00 1.85
1785 1807 6.241645 AGTTGTACTACTACCTCCGTTTAGT 58.758 40.000 8.27 0.00 33.11 2.24
1786 1808 6.717084 AGTTGTACTACTACCTCCGTTTAGTT 59.283 38.462 8.27 0.00 30.97 2.24
1787 1809 7.231519 AGTTGTACTACTACCTCCGTTTAGTTT 59.768 37.037 8.27 0.00 30.97 2.66
1788 1810 8.512138 GTTGTACTACTACCTCCGTTTAGTTTA 58.488 37.037 0.00 0.00 30.97 2.01
1789 1811 8.040716 TGTACTACTACCTCCGTTTAGTTTAC 57.959 38.462 0.00 0.00 30.97 2.01
1790 1812 7.663905 TGTACTACTACCTCCGTTTAGTTTACA 59.336 37.037 0.00 0.00 30.54 2.41
1791 1813 7.524717 ACTACTACCTCCGTTTAGTTTACAA 57.475 36.000 0.00 0.00 30.97 2.41
1792 1814 7.597386 ACTACTACCTCCGTTTAGTTTACAAG 58.403 38.462 0.00 0.00 30.97 3.16
1793 1815 6.410942 ACTACCTCCGTTTAGTTTACAAGT 57.589 37.500 0.00 0.00 0.00 3.16
1794 1816 6.450545 ACTACCTCCGTTTAGTTTACAAGTC 58.549 40.000 0.00 0.00 0.00 3.01
1795 1817 4.635223 ACCTCCGTTTAGTTTACAAGTCC 58.365 43.478 0.00 0.00 0.00 3.85
1796 1818 4.346127 ACCTCCGTTTAGTTTACAAGTCCT 59.654 41.667 0.00 0.00 0.00 3.85
1797 1819 5.539955 ACCTCCGTTTAGTTTACAAGTCCTA 59.460 40.000 0.00 0.00 0.00 2.94
1798 1820 5.866092 CCTCCGTTTAGTTTACAAGTCCTAC 59.134 44.000 0.00 0.00 0.00 3.18
1799 1821 5.460646 TCCGTTTAGTTTACAAGTCCTACG 58.539 41.667 0.00 0.00 0.00 3.51
1800 1822 4.090498 CCGTTTAGTTTACAAGTCCTACGC 59.910 45.833 0.00 0.00 0.00 4.42
1801 1823 4.201428 CGTTTAGTTTACAAGTCCTACGCG 60.201 45.833 3.53 3.53 0.00 6.01
1802 1824 4.503741 TTAGTTTACAAGTCCTACGCGT 57.496 40.909 19.17 19.17 0.00 6.01
1803 1825 5.621197 TTAGTTTACAAGTCCTACGCGTA 57.379 39.130 19.40 19.40 0.00 4.42
1804 1826 4.708726 AGTTTACAAGTCCTACGCGTAT 57.291 40.909 20.91 5.41 0.00 3.06
1805 1827 5.818136 AGTTTACAAGTCCTACGCGTATA 57.182 39.130 20.91 8.44 0.00 1.47
1806 1828 6.194796 AGTTTACAAGTCCTACGCGTATAA 57.805 37.500 20.91 10.57 0.00 0.98
1807 1829 6.030228 AGTTTACAAGTCCTACGCGTATAAC 58.970 40.000 20.91 19.37 0.00 1.89
1815 1837 2.074230 TACGCGTATAACCAGGGCCG 62.074 60.000 16.41 0.00 0.00 6.13
1828 1850 1.286248 AGGGCCGTACCTGAGAATTT 58.714 50.000 0.00 0.00 40.04 1.82
1841 1863 0.107165 AGAATTTAGAGGCCCGGTGC 60.107 55.000 0.00 3.09 40.16 5.01
1894 1926 5.975282 AGAAAAATACTCCCTCCGTAAGAC 58.025 41.667 0.00 0.00 43.02 3.01
1945 1977 5.671493 AGTGTCTTATATTTTGGGACGGAG 58.329 41.667 0.00 0.00 0.00 4.63
2101 2133 1.070134 AGAGAAAGGCGTGCACTTGTA 59.930 47.619 16.19 0.00 0.00 2.41
2192 2224 4.016444 TGAAGTGTTGCTTGGATATTCCC 58.984 43.478 0.00 0.00 37.59 3.97
2200 2232 5.296151 TGCTTGGATATTCCCTTGACTAG 57.704 43.478 0.00 0.00 35.03 2.57
2301 2333 2.514592 CCATACGGGCCTGCACAG 60.515 66.667 12.89 0.00 0.00 3.66
2320 2352 2.273123 CTGCACCTGCCTGCCATA 59.727 61.111 0.00 0.00 41.18 2.74
2321 2353 2.045045 TGCACCTGCCTGCCATAC 60.045 61.111 0.00 0.00 41.18 2.39
2322 2354 3.204827 GCACCTGCCTGCCATACG 61.205 66.667 0.00 0.00 34.31 3.06
2323 2355 2.514592 CACCTGCCTGCCATACGG 60.515 66.667 0.00 0.00 0.00 4.02
2333 2365 2.741092 CCATACGGGCCTGCGTAT 59.259 61.111 18.03 18.03 0.00 3.06
2334 2366 1.969085 CCATACGGGCCTGCGTATA 59.031 57.895 21.74 4.60 31.15 1.47
2335 2367 0.319083 CCATACGGGCCTGCGTATAA 59.681 55.000 21.74 2.88 31.15 0.98
2336 2368 1.425412 CATACGGGCCTGCGTATAAC 58.575 55.000 21.74 0.00 31.15 1.89
2337 2369 1.000506 CATACGGGCCTGCGTATAACT 59.999 52.381 21.74 3.74 31.15 2.24
2338 2370 1.979855 TACGGGCCTGCGTATAACTA 58.020 50.000 12.89 0.00 0.00 2.24
2339 2371 0.672342 ACGGGCCTGCGTATAACTAG 59.328 55.000 12.89 0.00 0.00 2.57
2340 2372 0.038526 CGGGCCTGCGTATAACTAGG 60.039 60.000 0.84 0.00 0.00 3.02
2341 2373 1.046204 GGGCCTGCGTATAACTAGGT 58.954 55.000 0.84 0.00 32.85 3.08
2342 2374 1.415289 GGGCCTGCGTATAACTAGGTT 59.585 52.381 0.84 0.00 32.85 3.50
2343 2375 2.480845 GGCCTGCGTATAACTAGGTTG 58.519 52.381 0.00 0.00 32.85 3.77
2344 2376 1.865340 GCCTGCGTATAACTAGGTTGC 59.135 52.381 0.00 0.00 32.85 4.17
2345 2377 2.483188 GCCTGCGTATAACTAGGTTGCT 60.483 50.000 0.00 0.00 32.85 3.91
2346 2378 3.243636 GCCTGCGTATAACTAGGTTGCTA 60.244 47.826 0.00 0.00 32.85 3.49
2347 2379 4.547532 CCTGCGTATAACTAGGTTGCTAG 58.452 47.826 0.00 0.00 0.00 3.42
2348 2380 4.037684 CCTGCGTATAACTAGGTTGCTAGT 59.962 45.833 0.00 0.00 41.46 2.57
2350 2382 5.969423 TGCGTATAACTAGGTTGCTAGTTT 58.031 37.500 1.45 0.00 44.87 2.66
2351 2383 6.400568 TGCGTATAACTAGGTTGCTAGTTTT 58.599 36.000 1.45 0.00 44.87 2.43
2352 2384 7.546358 TGCGTATAACTAGGTTGCTAGTTTTA 58.454 34.615 1.45 0.00 44.87 1.52
2353 2385 8.199449 TGCGTATAACTAGGTTGCTAGTTTTAT 58.801 33.333 1.45 0.00 44.87 1.40
2354 2386 8.697960 GCGTATAACTAGGTTGCTAGTTTTATC 58.302 37.037 1.45 0.00 44.87 1.75
2355 2387 9.189723 CGTATAACTAGGTTGCTAGTTTTATCC 57.810 37.037 1.45 0.00 44.87 2.59
2356 2388 9.486497 GTATAACTAGGTTGCTAGTTTTATCCC 57.514 37.037 1.45 0.00 44.87 3.85
2357 2389 5.369409 ACTAGGTTGCTAGTTTTATCCCC 57.631 43.478 0.00 0.00 36.85 4.81
2358 2390 3.664551 AGGTTGCTAGTTTTATCCCCC 57.335 47.619 0.00 0.00 0.00 5.40
2359 2391 3.198827 AGGTTGCTAGTTTTATCCCCCT 58.801 45.455 0.00 0.00 0.00 4.79
2360 2392 4.377134 AGGTTGCTAGTTTTATCCCCCTA 58.623 43.478 0.00 0.00 0.00 3.53
2361 2393 4.791880 AGGTTGCTAGTTTTATCCCCCTAA 59.208 41.667 0.00 0.00 0.00 2.69
2362 2394 5.435373 AGGTTGCTAGTTTTATCCCCCTAAT 59.565 40.000 0.00 0.00 0.00 1.73
2363 2395 6.622348 AGGTTGCTAGTTTTATCCCCCTAATA 59.378 38.462 0.00 0.00 0.00 0.98
2364 2396 7.297348 AGGTTGCTAGTTTTATCCCCCTAATAT 59.703 37.037 0.00 0.00 0.00 1.28
2365 2397 8.608598 GGTTGCTAGTTTTATCCCCCTAATATA 58.391 37.037 0.00 0.00 0.00 0.86
2400 2432 9.974980 AACACAAAAATTATACCGTCTGAAAAT 57.025 25.926 0.00 0.00 0.00 1.82
2401 2433 9.405587 ACACAAAAATTATACCGTCTGAAAATG 57.594 29.630 0.00 0.00 0.00 2.32
2402 2434 9.619316 CACAAAAATTATACCGTCTGAAAATGA 57.381 29.630 0.00 0.00 0.00 2.57
2409 2441 8.786826 TTATACCGTCTGAAAATGAAACATCT 57.213 30.769 0.00 0.00 0.00 2.90
2410 2442 5.362556 ACCGTCTGAAAATGAAACATCTG 57.637 39.130 0.00 0.00 0.00 2.90
2411 2443 5.063204 ACCGTCTGAAAATGAAACATCTGA 58.937 37.500 0.00 0.00 0.00 3.27
2412 2444 5.530915 ACCGTCTGAAAATGAAACATCTGAA 59.469 36.000 0.00 0.00 0.00 3.02
2413 2445 6.082338 CCGTCTGAAAATGAAACATCTGAAG 58.918 40.000 0.00 0.00 0.00 3.02
2414 2446 6.293626 CCGTCTGAAAATGAAACATCTGAAGT 60.294 38.462 0.00 0.00 0.00 3.01
2415 2447 7.134815 CGTCTGAAAATGAAACATCTGAAGTT 58.865 34.615 0.00 0.00 0.00 2.66
2416 2448 7.645340 CGTCTGAAAATGAAACATCTGAAGTTT 59.355 33.333 10.44 10.44 41.53 2.66
2417 2449 9.950680 GTCTGAAAATGAAACATCTGAAGTTTA 57.049 29.630 10.60 1.80 39.15 2.01
2465 2497 9.920946 ATATGACTTGTATTAGGTTGGTCAAAT 57.079 29.630 0.00 0.00 36.16 2.32
2466 2498 8.650143 ATGACTTGTATTAGGTTGGTCAAATT 57.350 30.769 0.00 0.00 36.16 1.82
2467 2499 7.881142 TGACTTGTATTAGGTTGGTCAAATTG 58.119 34.615 0.00 0.00 30.81 2.32
2468 2500 7.721842 TGACTTGTATTAGGTTGGTCAAATTGA 59.278 33.333 0.00 0.00 30.81 2.57
2469 2501 8.650143 ACTTGTATTAGGTTGGTCAAATTGAT 57.350 30.769 0.00 0.00 0.00 2.57
2470 2502 8.522830 ACTTGTATTAGGTTGGTCAAATTGATG 58.477 33.333 0.00 0.00 0.00 3.07
2471 2503 8.642935 TTGTATTAGGTTGGTCAAATTGATGA 57.357 30.769 0.00 0.00 0.00 2.92
2483 2515 6.591935 GTCAAATTGATGACCTAGGGATACA 58.408 40.000 14.81 8.11 43.11 2.29
2484 2516 6.483640 GTCAAATTGATGACCTAGGGATACAC 59.516 42.308 14.81 0.05 43.11 2.90
2485 2517 4.873746 ATTGATGACCTAGGGATACACG 57.126 45.455 14.81 0.00 39.74 4.49
2486 2518 1.961394 TGATGACCTAGGGATACACGC 59.039 52.381 14.81 4.90 39.74 5.34
2487 2519 1.961394 GATGACCTAGGGATACACGCA 59.039 52.381 14.81 0.00 39.74 5.24
2488 2520 2.082140 TGACCTAGGGATACACGCAT 57.918 50.000 14.81 0.00 39.74 4.73
2489 2521 1.686587 TGACCTAGGGATACACGCATG 59.313 52.381 14.81 0.00 39.74 4.06
2490 2522 0.393077 ACCTAGGGATACACGCATGC 59.607 55.000 14.81 7.91 39.74 4.06
2491 2523 0.320771 CCTAGGGATACACGCATGCC 60.321 60.000 13.15 0.00 36.70 4.40
2492 2524 0.320771 CTAGGGATACACGCATGCCC 60.321 60.000 13.15 5.95 37.12 5.36
2493 2525 2.072487 AGGGATACACGCATGCCCT 61.072 57.895 13.15 7.90 44.17 5.19
2494 2526 1.893808 GGGATACACGCATGCCCTG 60.894 63.158 13.15 10.28 35.86 4.45
2495 2527 1.153168 GGATACACGCATGCCCTGT 60.153 57.895 13.15 15.73 0.00 4.00
2496 2528 0.105964 GGATACACGCATGCCCTGTA 59.894 55.000 19.88 19.88 0.00 2.74
2497 2529 1.474320 GGATACACGCATGCCCTGTAA 60.474 52.381 20.94 9.51 0.00 2.41
2498 2530 2.285083 GATACACGCATGCCCTGTAAA 58.715 47.619 20.94 7.31 0.00 2.01
2499 2531 1.444836 TACACGCATGCCCTGTAAAC 58.555 50.000 13.15 0.00 0.00 2.01
2500 2532 0.250727 ACACGCATGCCCTGTAAACT 60.251 50.000 13.15 0.00 0.00 2.66
2501 2533 0.168788 CACGCATGCCCTGTAAACTG 59.831 55.000 13.15 0.00 0.00 3.16
2502 2534 0.036164 ACGCATGCCCTGTAAACTGA 59.964 50.000 13.15 0.00 0.00 3.41
2503 2535 0.729116 CGCATGCCCTGTAAACTGAG 59.271 55.000 13.15 0.00 0.00 3.35
2504 2536 1.675714 CGCATGCCCTGTAAACTGAGA 60.676 52.381 13.15 0.00 0.00 3.27
2505 2537 2.012673 GCATGCCCTGTAAACTGAGAG 58.987 52.381 6.36 0.00 0.00 3.20
2506 2538 2.355108 GCATGCCCTGTAAACTGAGAGA 60.355 50.000 6.36 0.00 0.00 3.10
2507 2539 3.529533 CATGCCCTGTAAACTGAGAGAG 58.470 50.000 0.00 0.00 0.00 3.20
2508 2540 2.889512 TGCCCTGTAAACTGAGAGAGA 58.110 47.619 0.00 0.00 0.00 3.10
2509 2541 2.828520 TGCCCTGTAAACTGAGAGAGAG 59.171 50.000 0.00 0.00 0.00 3.20
2510 2542 2.167487 GCCCTGTAAACTGAGAGAGAGG 59.833 54.545 0.00 0.00 0.00 3.69
2511 2543 3.436243 CCCTGTAAACTGAGAGAGAGGT 58.564 50.000 0.00 0.00 0.00 3.85
2512 2544 4.601084 CCCTGTAAACTGAGAGAGAGGTA 58.399 47.826 0.00 0.00 0.00 3.08
2513 2545 4.642885 CCCTGTAAACTGAGAGAGAGGTAG 59.357 50.000 0.00 0.00 0.00 3.18
2514 2546 5.258051 CCTGTAAACTGAGAGAGAGGTAGT 58.742 45.833 0.00 0.00 0.00 2.73
2515 2547 6.416415 CCTGTAAACTGAGAGAGAGGTAGTA 58.584 44.000 0.00 0.00 0.00 1.82
2516 2548 6.540914 CCTGTAAACTGAGAGAGAGGTAGTAG 59.459 46.154 0.00 0.00 0.00 2.57
2517 2549 7.018487 TGTAAACTGAGAGAGAGGTAGTAGT 57.982 40.000 0.00 0.00 0.00 2.73
2518 2550 8.143673 TGTAAACTGAGAGAGAGGTAGTAGTA 57.856 38.462 0.00 0.00 0.00 1.82
2519 2551 8.040132 TGTAAACTGAGAGAGAGGTAGTAGTAC 58.960 40.741 0.00 0.00 0.00 2.73
2520 2552 6.879367 AACTGAGAGAGAGGTAGTAGTACT 57.121 41.667 8.14 8.14 0.00 2.73
2521 2553 6.475596 ACTGAGAGAGAGGTAGTAGTACTC 57.524 45.833 5.96 0.00 0.00 2.59
2562 2594 0.737019 GCCACCATGCAAAATGACCG 60.737 55.000 0.00 0.00 0.00 4.79
2594 2626 4.379186 CGACCAAGTTACTATCGTCAGTGT 60.379 45.833 5.72 0.00 0.00 3.55
2607 2639 2.547855 CGTCAGTGTTGGGTCTCATTGA 60.548 50.000 0.00 0.00 0.00 2.57
2632 2664 5.412904 CCTTTAGGTAGTCAAAAGCTGGAAG 59.587 44.000 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.961838 AAATTGCCGCCCGTCGCTA 62.962 57.895 0.00 0.00 36.73 4.26
5 6 2.741116 AAACAAATTGCCGCCCGTCG 62.741 55.000 0.00 0.00 38.08 5.12
6 7 0.598942 AAAACAAATTGCCGCCCGTC 60.599 50.000 0.00 0.00 0.00 4.79
8 9 1.858719 CAAAACAAATTGCCGCCCG 59.141 52.632 0.00 0.00 0.00 6.13
34 35 4.098196 GTCTACAGGATCTAGGGTGTTGAC 59.902 50.000 10.71 10.71 38.08 3.18
51 52 7.153217 TGTCTCATCTAAATTGTCGTCTACA 57.847 36.000 0.00 0.00 35.88 2.74
52 53 7.915923 TGATGTCTCATCTAAATTGTCGTCTAC 59.084 37.037 10.40 0.00 0.00 2.59
54 55 6.754209 GTGATGTCTCATCTAAATTGTCGTCT 59.246 38.462 10.40 0.00 32.98 4.18
58 59 9.593134 AGTTAGTGATGTCTCATCTAAATTGTC 57.407 33.333 10.40 0.00 32.17 3.18
141 142 1.555075 GGACTCCCTGACATAGTTGCA 59.445 52.381 0.00 0.00 0.00 4.08
187 193 3.264947 TGCTCTGATGCATAAGTGTGAC 58.735 45.455 11.02 0.00 38.12 3.67
190 196 3.678289 TGTTGCTCTGATGCATAAGTGT 58.322 40.909 11.02 0.00 42.96 3.55
191 197 4.895224 ATGTTGCTCTGATGCATAAGTG 57.105 40.909 11.02 9.71 42.96 3.16
203 209 0.674895 GGACAGGCGAATGTTGCTCT 60.675 55.000 0.00 0.00 32.25 4.09
213 219 1.299648 CATTCCTTGGGACAGGCGA 59.700 57.895 0.00 0.00 42.39 5.54
241 247 4.398319 TCTTTTCGCTCATTCCTTTCCTT 58.602 39.130 0.00 0.00 0.00 3.36
242 248 4.021102 TCTTTTCGCTCATTCCTTTCCT 57.979 40.909 0.00 0.00 0.00 3.36
244 250 6.422776 TGTATCTTTTCGCTCATTCCTTTC 57.577 37.500 0.00 0.00 0.00 2.62
245 251 7.396540 AATGTATCTTTTCGCTCATTCCTTT 57.603 32.000 0.00 0.00 0.00 3.11
249 255 9.722056 AACATTAATGTATCTTTTCGCTCATTC 57.278 29.630 21.07 0.00 40.80 2.67
251 257 9.722056 GAAACATTAATGTATCTTTTCGCTCAT 57.278 29.630 21.07 0.00 40.80 2.90
252 258 8.181573 GGAAACATTAATGTATCTTTTCGCTCA 58.818 33.333 21.07 0.00 40.80 4.26
253 259 8.181573 TGGAAACATTAATGTATCTTTTCGCTC 58.818 33.333 21.07 8.90 40.80 5.03
254 260 7.968405 GTGGAAACATTAATGTATCTTTTCGCT 59.032 33.333 21.07 0.00 46.14 4.93
255 261 7.220108 GGTGGAAACATTAATGTATCTTTTCGC 59.780 37.037 21.07 15.54 46.14 4.70
256 262 8.458843 AGGTGGAAACATTAATGTATCTTTTCG 58.541 33.333 21.07 0.00 46.14 3.46
259 265 9.975218 AGTAGGTGGAAACATTAATGTATCTTT 57.025 29.630 21.07 11.74 46.14 2.52
260 266 9.614792 GAGTAGGTGGAAACATTAATGTATCTT 57.385 33.333 21.07 12.09 46.14 2.40
261 267 8.993424 AGAGTAGGTGGAAACATTAATGTATCT 58.007 33.333 21.07 13.23 46.14 1.98
262 268 9.262358 GAGAGTAGGTGGAAACATTAATGTATC 57.738 37.037 21.07 13.46 46.14 2.24
263 269 8.993424 AGAGAGTAGGTGGAAACATTAATGTAT 58.007 33.333 21.07 9.10 46.14 2.29
264 270 8.375493 AGAGAGTAGGTGGAAACATTAATGTA 57.625 34.615 21.07 3.08 46.14 2.29
265 271 7.259088 AGAGAGTAGGTGGAAACATTAATGT 57.741 36.000 15.47 15.47 46.14 2.71
266 272 8.567285 AAAGAGAGTAGGTGGAAACATTAATG 57.433 34.615 14.01 14.01 46.14 1.90
270 276 9.892130 CTATAAAAGAGAGTAGGTGGAAACATT 57.108 33.333 0.00 0.00 46.14 2.71
271 277 7.988028 GCTATAAAAGAGAGTAGGTGGAAACAT 59.012 37.037 0.00 0.00 46.14 2.71
272 278 7.038587 TGCTATAAAAGAGAGTAGGTGGAAACA 60.039 37.037 0.00 0.00 38.70 2.83
273 279 7.278203 GTGCTATAAAAGAGAGTAGGTGGAAAC 59.722 40.741 0.00 0.00 0.00 2.78
274 280 7.038587 TGTGCTATAAAAGAGAGTAGGTGGAAA 60.039 37.037 0.00 0.00 0.00 3.13
275 281 6.439375 TGTGCTATAAAAGAGAGTAGGTGGAA 59.561 38.462 0.00 0.00 0.00 3.53
276 282 5.955959 TGTGCTATAAAAGAGAGTAGGTGGA 59.044 40.000 0.00 0.00 0.00 4.02
277 283 6.222038 TGTGCTATAAAAGAGAGTAGGTGG 57.778 41.667 0.00 0.00 0.00 4.61
278 284 6.276847 CCTGTGCTATAAAAGAGAGTAGGTG 58.723 44.000 0.00 0.00 0.00 4.00
279 285 5.364157 CCCTGTGCTATAAAAGAGAGTAGGT 59.636 44.000 0.00 0.00 0.00 3.08
280 286 5.221541 CCCCTGTGCTATAAAAGAGAGTAGG 60.222 48.000 0.00 0.00 0.00 3.18
281 287 5.364157 ACCCCTGTGCTATAAAAGAGAGTAG 59.636 44.000 0.00 0.00 0.00 2.57
282 288 5.128827 CACCCCTGTGCTATAAAAGAGAGTA 59.871 44.000 0.00 0.00 35.31 2.59
283 289 4.080863 CACCCCTGTGCTATAAAAGAGAGT 60.081 45.833 0.00 0.00 35.31 3.24
284 290 4.162320 TCACCCCTGTGCTATAAAAGAGAG 59.838 45.833 0.00 0.00 42.46 3.20
285 291 4.101114 TCACCCCTGTGCTATAAAAGAGA 58.899 43.478 0.00 0.00 42.46 3.10
286 292 4.080863 ACTCACCCCTGTGCTATAAAAGAG 60.081 45.833 0.00 0.00 42.46 2.85
287 293 3.844211 ACTCACCCCTGTGCTATAAAAGA 59.156 43.478 0.00 0.00 42.46 2.52
288 294 4.222124 ACTCACCCCTGTGCTATAAAAG 57.778 45.455 0.00 0.00 42.46 2.27
289 295 4.650972 AACTCACCCCTGTGCTATAAAA 57.349 40.909 0.00 0.00 42.46 1.52
290 296 5.249852 ACTTAACTCACCCCTGTGCTATAAA 59.750 40.000 0.00 0.00 42.46 1.40
291 297 4.781087 ACTTAACTCACCCCTGTGCTATAA 59.219 41.667 0.00 0.00 42.46 0.98
292 298 4.359105 ACTTAACTCACCCCTGTGCTATA 58.641 43.478 0.00 0.00 42.46 1.31
293 299 3.182152 ACTTAACTCACCCCTGTGCTAT 58.818 45.455 0.00 0.00 42.46 2.97
294 300 2.616524 ACTTAACTCACCCCTGTGCTA 58.383 47.619 0.00 0.00 42.46 3.49
295 301 1.435256 ACTTAACTCACCCCTGTGCT 58.565 50.000 0.00 0.00 42.46 4.40
296 302 3.629142 ATACTTAACTCACCCCTGTGC 57.371 47.619 0.00 0.00 42.46 4.57
297 303 4.101119 CCCTATACTTAACTCACCCCTGTG 59.899 50.000 0.00 0.00 44.18 3.66
298 304 4.015918 TCCCTATACTTAACTCACCCCTGT 60.016 45.833 0.00 0.00 0.00 4.00
299 305 4.553678 TCCCTATACTTAACTCACCCCTG 58.446 47.826 0.00 0.00 0.00 4.45
300 306 4.913154 TCCCTATACTTAACTCACCCCT 57.087 45.455 0.00 0.00 0.00 4.79
301 307 5.152934 TCATCCCTATACTTAACTCACCCC 58.847 45.833 0.00 0.00 0.00 4.95
302 308 6.070710 GGATCATCCCTATACTTAACTCACCC 60.071 46.154 0.00 0.00 0.00 4.61
303 309 6.497259 TGGATCATCCCTATACTTAACTCACC 59.503 42.308 0.00 0.00 35.03 4.02
304 310 7.233757 AGTGGATCATCCCTATACTTAACTCAC 59.766 40.741 0.00 0.00 35.03 3.51
305 311 7.306013 AGTGGATCATCCCTATACTTAACTCA 58.694 38.462 0.00 0.00 35.03 3.41
306 312 7.362229 CGAGTGGATCATCCCTATACTTAACTC 60.362 44.444 0.00 3.24 35.03 3.01
307 313 6.434652 CGAGTGGATCATCCCTATACTTAACT 59.565 42.308 0.00 0.00 35.03 2.24
308 314 6.208994 ACGAGTGGATCATCCCTATACTTAAC 59.791 42.308 0.00 0.00 35.03 2.01
309 315 6.312529 ACGAGTGGATCATCCCTATACTTAA 58.687 40.000 0.00 0.00 35.03 1.85
310 316 5.888901 ACGAGTGGATCATCCCTATACTTA 58.111 41.667 0.00 0.00 35.03 2.24
311 317 4.742012 ACGAGTGGATCATCCCTATACTT 58.258 43.478 0.00 0.00 35.03 2.24
312 318 4.337145 GACGAGTGGATCATCCCTATACT 58.663 47.826 0.00 0.00 35.03 2.12
313 319 3.127203 CGACGAGTGGATCATCCCTATAC 59.873 52.174 0.00 0.00 35.03 1.47
314 320 3.244805 ACGACGAGTGGATCATCCCTATA 60.245 47.826 0.00 0.00 35.03 1.31
315 321 2.163509 CGACGAGTGGATCATCCCTAT 58.836 52.381 0.00 0.00 35.03 2.57
316 322 1.133884 ACGACGAGTGGATCATCCCTA 60.134 52.381 0.00 0.00 35.03 3.53
317 323 0.395862 ACGACGAGTGGATCATCCCT 60.396 55.000 0.00 0.00 35.03 4.20
318 324 1.315690 TACGACGAGTGGATCATCCC 58.684 55.000 0.00 0.00 35.03 3.85
319 325 3.431922 TTTACGACGAGTGGATCATCC 57.568 47.619 0.00 0.00 36.96 3.51
320 326 4.617645 GCTATTTACGACGAGTGGATCATC 59.382 45.833 0.00 0.00 0.00 2.92
321 327 4.547532 GCTATTTACGACGAGTGGATCAT 58.452 43.478 0.00 0.00 0.00 2.45
322 328 3.547413 CGCTATTTACGACGAGTGGATCA 60.547 47.826 0.00 0.00 0.00 2.92
323 329 2.971915 CGCTATTTACGACGAGTGGATC 59.028 50.000 0.00 0.00 0.00 3.36
324 330 2.287427 CCGCTATTTACGACGAGTGGAT 60.287 50.000 0.00 0.00 41.26 3.41
325 331 1.064505 CCGCTATTTACGACGAGTGGA 59.935 52.381 0.00 0.00 41.26 4.02
326 332 1.474017 CCGCTATTTACGACGAGTGG 58.526 55.000 0.00 0.00 33.52 4.00
327 333 0.844503 GCCGCTATTTACGACGAGTG 59.155 55.000 0.00 0.00 0.00 3.51
328 334 0.452987 TGCCGCTATTTACGACGAGT 59.547 50.000 0.00 0.00 0.00 4.18
329 335 0.844503 GTGCCGCTATTTACGACGAG 59.155 55.000 0.00 0.00 0.00 4.18
330 336 0.862701 CGTGCCGCTATTTACGACGA 60.863 55.000 0.00 0.00 38.72 4.20
331 337 1.135699 ACGTGCCGCTATTTACGACG 61.136 55.000 7.14 0.00 39.61 5.12
332 338 0.994263 AACGTGCCGCTATTTACGAC 59.006 50.000 7.14 0.00 39.61 4.34
333 339 2.097304 TCTAACGTGCCGCTATTTACGA 59.903 45.455 7.14 0.00 39.61 3.43
334 340 2.453080 TCTAACGTGCCGCTATTTACG 58.547 47.619 0.00 0.00 41.86 3.18
335 341 3.613737 TGTTCTAACGTGCCGCTATTTAC 59.386 43.478 0.00 0.00 0.00 2.01
336 342 3.847542 TGTTCTAACGTGCCGCTATTTA 58.152 40.909 0.00 0.00 0.00 1.40
337 343 2.690786 TGTTCTAACGTGCCGCTATTT 58.309 42.857 0.00 0.00 0.00 1.40
338 344 2.373540 TGTTCTAACGTGCCGCTATT 57.626 45.000 0.00 0.00 0.00 1.73
339 345 2.596904 ATGTTCTAACGTGCCGCTAT 57.403 45.000 0.00 0.00 0.00 2.97
340 346 2.373540 AATGTTCTAACGTGCCGCTA 57.626 45.000 0.00 0.00 0.00 4.26
341 347 2.373540 TAATGTTCTAACGTGCCGCT 57.626 45.000 0.00 0.00 0.00 5.52
342 348 2.864343 AGATAATGTTCTAACGTGCCGC 59.136 45.455 0.00 0.00 0.00 6.53
343 349 5.038683 TGTAGATAATGTTCTAACGTGCCG 58.961 41.667 0.00 0.00 30.25 5.69
344 350 7.650504 TGTATGTAGATAATGTTCTAACGTGCC 59.349 37.037 0.00 0.00 30.25 5.01
345 351 8.570096 TGTATGTAGATAATGTTCTAACGTGC 57.430 34.615 0.00 0.00 30.25 5.34
350 356 9.542462 GCCACTTGTATGTAGATAATGTTCTAA 57.458 33.333 0.00 0.00 30.25 2.10
351 357 8.924303 AGCCACTTGTATGTAGATAATGTTCTA 58.076 33.333 0.00 0.00 0.00 2.10
352 358 7.796054 AGCCACTTGTATGTAGATAATGTTCT 58.204 34.615 0.00 0.00 0.00 3.01
353 359 9.197694 CTAGCCACTTGTATGTAGATAATGTTC 57.802 37.037 0.00 0.00 0.00 3.18
354 360 8.150945 CCTAGCCACTTGTATGTAGATAATGTT 58.849 37.037 0.00 0.00 0.00 2.71
355 361 7.509318 TCCTAGCCACTTGTATGTAGATAATGT 59.491 37.037 0.00 0.00 0.00 2.71
356 362 7.896811 TCCTAGCCACTTGTATGTAGATAATG 58.103 38.462 0.00 0.00 0.00 1.90
357 363 8.492415 TTCCTAGCCACTTGTATGTAGATAAT 57.508 34.615 0.00 0.00 0.00 1.28
358 364 7.907841 TTCCTAGCCACTTGTATGTAGATAA 57.092 36.000 0.00 0.00 0.00 1.75
359 365 7.471539 GCTTTCCTAGCCACTTGTATGTAGATA 60.472 40.741 0.00 0.00 44.48 1.98
360 366 6.686632 GCTTTCCTAGCCACTTGTATGTAGAT 60.687 42.308 0.00 0.00 44.48 1.98
361 367 5.395324 GCTTTCCTAGCCACTTGTATGTAGA 60.395 44.000 0.00 0.00 44.48 2.59
362 368 4.811557 GCTTTCCTAGCCACTTGTATGTAG 59.188 45.833 0.00 0.00 44.48 2.74
363 369 4.766375 GCTTTCCTAGCCACTTGTATGTA 58.234 43.478 0.00 0.00 44.48 2.29
364 370 3.610911 GCTTTCCTAGCCACTTGTATGT 58.389 45.455 0.00 0.00 44.48 2.29
383 389 4.454504 ACAAAAATAAGACGATTGGACGCT 59.545 37.500 0.00 0.00 36.70 5.07
470 476 6.346359 CGAGGGTTTAAAACAGACTTTACTCG 60.346 42.308 5.45 7.60 32.35 4.18
499 505 2.249844 TGAAGGTTCGGGTTTGAGTC 57.750 50.000 0.00 0.00 0.00 3.36
501 507 2.351738 GCATTGAAGGTTCGGGTTTGAG 60.352 50.000 0.00 0.00 0.00 3.02
573 579 3.071479 TGACAAATTAGTCAAGACCGGC 58.929 45.455 0.00 0.00 44.92 6.13
595 601 4.997395 GCCGAGATCATTATTTTCCTAGCA 59.003 41.667 0.00 0.00 0.00 3.49
614 620 1.991339 TAGAGAGTGATCCCGGCCGA 61.991 60.000 30.73 8.21 0.00 5.54
639 645 1.521681 GCGGACCCATGTAGTCAGC 60.522 63.158 17.78 17.78 45.61 4.26
731 738 3.628487 GCCGTGGCAAACCTTGTATTATA 59.372 43.478 5.89 0.00 41.49 0.98
770 777 0.472471 ATGTCACGGTTCAGGGTGTT 59.528 50.000 0.00 0.00 35.67 3.32
981 994 3.664107 TCTGAAGGAAAACATCACGGAG 58.336 45.455 0.00 0.00 0.00 4.63
1075 1089 1.570813 CGATCGCCAAGAGCAACATA 58.429 50.000 0.26 0.00 44.04 2.29
1129 1143 3.536158 TTTGAAGCAACGCAGTACATC 57.464 42.857 0.00 0.00 45.00 3.06
1137 1151 3.308323 TGGACAAAATTTTGAAGCAACGC 59.692 39.130 32.20 12.92 40.55 4.84
1152 1166 3.198635 TGGCCATTCTTTGTTTGGACAAA 59.801 39.130 0.00 4.83 45.52 2.83
1166 1180 3.379688 GGAAGATCAGAACTTGGCCATTC 59.620 47.826 6.09 8.91 0.00 2.67
1245 1260 3.604875 TTGTCGTACAAGGGATTCCTC 57.395 47.619 0.00 0.00 44.07 3.71
1422 1440 4.516321 TCAGTTGAATATGCCATCCAATCG 59.484 41.667 0.00 0.00 0.00 3.34
1432 1450 9.608617 CTCATCACATTATTCAGTTGAATATGC 57.391 33.333 13.64 0.00 43.93 3.14
1436 1454 8.771766 CGATCTCATCACATTATTCAGTTGAAT 58.228 33.333 11.69 11.69 45.77 2.57
1488 1506 2.492881 TCTTCATACGGCTTAACGGTGA 59.507 45.455 0.00 0.00 38.39 4.02
1494 1512 5.001237 TCATCGTTCTTCATACGGCTTAA 57.999 39.130 0.00 0.00 39.38 1.85
1583 1601 8.500753 TTCAAGTGTTAACATCATATACCACC 57.499 34.615 12.26 0.00 0.00 4.61
1691 1711 6.446451 ACAATGTACTACCCCAAGGAGTATA 58.554 40.000 0.00 0.00 36.73 1.47
1692 1712 5.286221 ACAATGTACTACCCCAAGGAGTAT 58.714 41.667 0.00 0.00 36.73 2.12
1719 1741 2.030363 GGTACTCTCCATCTGATGAGCG 60.030 54.545 18.92 11.13 0.00 5.03
1738 1760 0.250901 GAGTCACAACCATGCAGGGT 60.251 55.000 19.28 19.28 45.04 4.34
1771 1793 5.866092 GGACTTGTAAACTAAACGGAGGTAG 59.134 44.000 0.00 0.00 0.00 3.18
1775 1797 5.570589 CGTAGGACTTGTAAACTAAACGGAG 59.429 44.000 0.00 0.00 0.00 4.63
1776 1798 5.460646 CGTAGGACTTGTAAACTAAACGGA 58.539 41.667 0.00 0.00 0.00 4.69
1777 1799 4.090498 GCGTAGGACTTGTAAACTAAACGG 59.910 45.833 0.00 0.00 0.00 4.44
1778 1800 4.201428 CGCGTAGGACTTGTAAACTAAACG 60.201 45.833 0.00 0.00 0.00 3.60
1779 1801 4.681483 ACGCGTAGGACTTGTAAACTAAAC 59.319 41.667 11.67 0.00 0.00 2.01
1780 1802 4.870363 ACGCGTAGGACTTGTAAACTAAA 58.130 39.130 11.67 0.00 0.00 1.85
1781 1803 4.503741 ACGCGTAGGACTTGTAAACTAA 57.496 40.909 11.67 0.00 0.00 2.24
1782 1804 5.818136 ATACGCGTAGGACTTGTAAACTA 57.182 39.130 24.78 0.00 0.00 2.24
1783 1805 4.708726 ATACGCGTAGGACTTGTAAACT 57.291 40.909 24.78 0.00 0.00 2.66
1784 1806 5.230097 GGTTATACGCGTAGGACTTGTAAAC 59.770 44.000 24.78 14.36 0.00 2.01
1785 1807 5.105957 TGGTTATACGCGTAGGACTTGTAAA 60.106 40.000 24.78 0.00 0.00 2.01
1786 1808 4.397730 TGGTTATACGCGTAGGACTTGTAA 59.602 41.667 24.78 12.90 0.00 2.41
1787 1809 3.944650 TGGTTATACGCGTAGGACTTGTA 59.055 43.478 24.78 7.25 0.00 2.41
1788 1810 2.754552 TGGTTATACGCGTAGGACTTGT 59.245 45.455 24.78 8.30 0.00 3.16
1789 1811 3.369385 CTGGTTATACGCGTAGGACTTG 58.631 50.000 24.78 15.71 0.00 3.16
1790 1812 2.360165 CCTGGTTATACGCGTAGGACTT 59.640 50.000 24.78 9.82 0.00 3.01
1791 1813 1.952296 CCTGGTTATACGCGTAGGACT 59.048 52.381 24.78 10.21 0.00 3.85
1792 1814 1.000938 CCCTGGTTATACGCGTAGGAC 60.001 57.143 24.78 22.22 0.00 3.85
1793 1815 1.321474 CCCTGGTTATACGCGTAGGA 58.679 55.000 24.78 12.19 0.00 2.94
1794 1816 0.319297 GCCCTGGTTATACGCGTAGG 60.319 60.000 24.78 19.63 0.00 3.18
1795 1817 0.319297 GGCCCTGGTTATACGCGTAG 60.319 60.000 24.78 11.28 0.00 3.51
1796 1818 1.741525 GGCCCTGGTTATACGCGTA 59.258 57.895 22.94 22.94 0.00 4.42
1797 1819 2.502577 GGCCCTGGTTATACGCGT 59.497 61.111 19.17 19.17 0.00 6.01
1798 1820 2.074230 TACGGCCCTGGTTATACGCG 62.074 60.000 3.53 3.53 0.00 6.01
1799 1821 0.598419 GTACGGCCCTGGTTATACGC 60.598 60.000 0.00 0.00 0.00 4.42
1800 1822 0.032540 GGTACGGCCCTGGTTATACG 59.967 60.000 0.00 0.00 0.00 3.06
1801 1823 1.069668 CAGGTACGGCCCTGGTTATAC 59.930 57.143 13.31 0.00 46.89 1.47
1802 1824 1.416243 CAGGTACGGCCCTGGTTATA 58.584 55.000 13.31 0.00 46.89 0.98
1803 1825 2.218066 CAGGTACGGCCCTGGTTAT 58.782 57.895 13.31 0.00 46.89 1.89
1804 1826 3.716381 CAGGTACGGCCCTGGTTA 58.284 61.111 13.31 0.00 46.89 2.85
1815 1837 3.492829 CGGGCCTCTAAATTCTCAGGTAC 60.493 52.174 0.84 0.00 0.00 3.34
1828 1850 0.913205 TATTTTGCACCGGGCCTCTA 59.087 50.000 6.32 0.00 43.89 2.43
1841 1863 3.438360 GGCCTCATTTCGTGCTATTTTG 58.562 45.455 0.00 0.00 0.00 2.44
1894 1926 7.075741 AGCAAGCTATGTTAGTTTACAAAACG 58.924 34.615 0.00 0.00 0.00 3.60
1923 1955 4.814771 CCTCCGTCCCAAAATATAAGACAC 59.185 45.833 0.00 0.00 0.00 3.67
2049 2081 7.609146 TCTCTGTCGACTTAAATAACTACTCCA 59.391 37.037 17.92 0.00 0.00 3.86
2101 2133 3.194116 CCAATGCAAGCCACTACAGAAAT 59.806 43.478 0.00 0.00 0.00 2.17
2303 2335 2.117156 GTATGGCAGGCAGGTGCAG 61.117 63.158 1.89 0.00 45.93 4.41
2304 2336 2.045045 GTATGGCAGGCAGGTGCA 60.045 61.111 1.89 0.00 45.93 4.57
2305 2337 3.204827 CGTATGGCAGGCAGGTGC 61.205 66.667 1.89 0.00 43.19 5.01
2306 2338 2.514592 CCGTATGGCAGGCAGGTG 60.515 66.667 1.89 0.00 0.00 4.00
2307 2339 3.797353 CCCGTATGGCAGGCAGGT 61.797 66.667 1.89 0.00 0.00 4.00
2319 2351 1.881973 CTAGTTATACGCAGGCCCGTA 59.118 52.381 15.28 15.28 46.28 4.02
2320 2352 0.672342 CTAGTTATACGCAGGCCCGT 59.328 55.000 11.84 11.84 44.62 5.28
2321 2353 0.038526 CCTAGTTATACGCAGGCCCG 60.039 60.000 0.00 0.00 0.00 6.13
2322 2354 1.046204 ACCTAGTTATACGCAGGCCC 58.954 55.000 0.00 0.00 31.06 5.80
2323 2355 2.480845 CAACCTAGTTATACGCAGGCC 58.519 52.381 0.00 0.00 31.06 5.19
2324 2356 1.865340 GCAACCTAGTTATACGCAGGC 59.135 52.381 0.00 0.00 31.06 4.85
2325 2357 3.454371 AGCAACCTAGTTATACGCAGG 57.546 47.619 0.00 0.00 33.24 4.85
2336 2368 4.412528 AGGGGGATAAAACTAGCAACCTAG 59.587 45.833 0.00 0.00 45.35 3.02
2337 2369 4.377134 AGGGGGATAAAACTAGCAACCTA 58.623 43.478 0.00 0.00 0.00 3.08
2338 2370 3.198827 AGGGGGATAAAACTAGCAACCT 58.801 45.455 0.00 0.00 0.00 3.50
2339 2371 3.664551 AGGGGGATAAAACTAGCAACC 57.335 47.619 0.00 0.00 0.00 3.77
2374 2406 9.974980 ATTTTCAGACGGTATAATTTTTGTGTT 57.025 25.926 0.00 0.00 0.00 3.32
2375 2407 9.405587 CATTTTCAGACGGTATAATTTTTGTGT 57.594 29.630 0.00 0.00 0.00 3.72
2376 2408 9.619316 TCATTTTCAGACGGTATAATTTTTGTG 57.381 29.630 0.00 0.00 0.00 3.33
2383 2415 9.396022 AGATGTTTCATTTTCAGACGGTATAAT 57.604 29.630 0.00 0.00 0.00 1.28
2384 2416 8.664798 CAGATGTTTCATTTTCAGACGGTATAA 58.335 33.333 0.00 0.00 0.00 0.98
2385 2417 8.038351 TCAGATGTTTCATTTTCAGACGGTATA 58.962 33.333 0.00 0.00 0.00 1.47
2386 2418 6.878923 TCAGATGTTTCATTTTCAGACGGTAT 59.121 34.615 0.00 0.00 0.00 2.73
2387 2419 6.227522 TCAGATGTTTCATTTTCAGACGGTA 58.772 36.000 0.00 0.00 0.00 4.02
2388 2420 5.063204 TCAGATGTTTCATTTTCAGACGGT 58.937 37.500 0.00 0.00 0.00 4.83
2389 2421 5.611796 TCAGATGTTTCATTTTCAGACGG 57.388 39.130 0.00 0.00 0.00 4.79
2390 2422 6.662616 ACTTCAGATGTTTCATTTTCAGACG 58.337 36.000 0.00 0.00 0.00 4.18
2391 2423 8.862550 AAACTTCAGATGTTTCATTTTCAGAC 57.137 30.769 8.32 0.00 32.91 3.51
2439 2471 9.920946 ATTTGACCAACCTAATACAAGTCATAT 57.079 29.630 0.00 0.00 33.21 1.78
2440 2472 9.747898 AATTTGACCAACCTAATACAAGTCATA 57.252 29.630 0.00 0.00 33.21 2.15
2441 2473 8.522830 CAATTTGACCAACCTAATACAAGTCAT 58.477 33.333 0.00 0.00 33.21 3.06
2442 2474 7.721842 TCAATTTGACCAACCTAATACAAGTCA 59.278 33.333 0.00 0.00 0.00 3.41
2443 2475 8.106247 TCAATTTGACCAACCTAATACAAGTC 57.894 34.615 0.00 0.00 0.00 3.01
2444 2476 8.522830 CATCAATTTGACCAACCTAATACAAGT 58.477 33.333 0.15 0.00 0.00 3.16
2445 2477 8.739039 TCATCAATTTGACCAACCTAATACAAG 58.261 33.333 0.15 0.00 0.00 3.16
2446 2478 8.519526 GTCATCAATTTGACCAACCTAATACAA 58.480 33.333 0.15 0.00 40.11 2.41
2447 2479 8.050778 GTCATCAATTTGACCAACCTAATACA 57.949 34.615 0.15 0.00 40.11 2.29
2459 2491 6.483640 GTGTATCCCTAGGTCATCAATTTGAC 59.516 42.308 8.29 2.20 44.27 3.18
2460 2492 6.591935 GTGTATCCCTAGGTCATCAATTTGA 58.408 40.000 8.29 0.75 0.00 2.69
2461 2493 5.466728 CGTGTATCCCTAGGTCATCAATTTG 59.533 44.000 8.29 0.00 0.00 2.32
2462 2494 5.611374 CGTGTATCCCTAGGTCATCAATTT 58.389 41.667 8.29 0.00 0.00 1.82
2463 2495 4.503296 GCGTGTATCCCTAGGTCATCAATT 60.503 45.833 8.29 0.00 0.00 2.32
2464 2496 3.006967 GCGTGTATCCCTAGGTCATCAAT 59.993 47.826 8.29 0.00 0.00 2.57
2465 2497 2.364324 GCGTGTATCCCTAGGTCATCAA 59.636 50.000 8.29 0.00 0.00 2.57
2466 2498 1.961394 GCGTGTATCCCTAGGTCATCA 59.039 52.381 8.29 0.00 0.00 3.07
2467 2499 1.961394 TGCGTGTATCCCTAGGTCATC 59.039 52.381 8.29 0.00 0.00 2.92
2468 2500 2.082140 TGCGTGTATCCCTAGGTCAT 57.918 50.000 8.29 1.72 0.00 3.06
2469 2501 1.686587 CATGCGTGTATCCCTAGGTCA 59.313 52.381 8.29 0.00 0.00 4.02
2470 2502 1.605712 GCATGCGTGTATCCCTAGGTC 60.606 57.143 8.29 0.00 0.00 3.85
2471 2503 0.393077 GCATGCGTGTATCCCTAGGT 59.607 55.000 8.29 0.00 0.00 3.08
2472 2504 0.320771 GGCATGCGTGTATCCCTAGG 60.321 60.000 12.44 0.06 0.00 3.02
2473 2505 0.320771 GGGCATGCGTGTATCCCTAG 60.321 60.000 12.44 0.00 34.19 3.02
2474 2506 0.762842 AGGGCATGCGTGTATCCCTA 60.763 55.000 18.19 0.00 45.03 3.53
2475 2507 2.072487 AGGGCATGCGTGTATCCCT 61.072 57.895 14.95 14.95 42.25 4.20
2476 2508 1.893808 CAGGGCATGCGTGTATCCC 60.894 63.158 12.44 11.16 37.24 3.85
2477 2509 0.105964 TACAGGGCATGCGTGTATCC 59.894 55.000 21.51 12.57 0.00 2.59
2478 2510 1.948104 TTACAGGGCATGCGTGTATC 58.052 50.000 24.34 6.60 0.00 2.24
2479 2511 2.014128 GTTTACAGGGCATGCGTGTAT 58.986 47.619 24.34 8.93 0.00 2.29
2480 2512 1.002659 AGTTTACAGGGCATGCGTGTA 59.997 47.619 21.51 21.51 0.00 2.90
2481 2513 0.250727 AGTTTACAGGGCATGCGTGT 60.251 50.000 23.22 23.22 0.00 4.49
2482 2514 0.168788 CAGTTTACAGGGCATGCGTG 59.831 55.000 12.44 14.08 0.00 5.34
2483 2515 0.036164 TCAGTTTACAGGGCATGCGT 59.964 50.000 12.44 6.78 0.00 5.24
2484 2516 0.729116 CTCAGTTTACAGGGCATGCG 59.271 55.000 12.44 0.00 0.00 4.73
2485 2517 2.012673 CTCTCAGTTTACAGGGCATGC 58.987 52.381 9.90 9.90 0.00 4.06
2486 2518 3.196469 TCTCTCTCAGTTTACAGGGCATG 59.804 47.826 0.00 0.00 0.00 4.06
2487 2519 3.445008 TCTCTCTCAGTTTACAGGGCAT 58.555 45.455 0.00 0.00 0.00 4.40
2488 2520 2.828520 CTCTCTCTCAGTTTACAGGGCA 59.171 50.000 0.00 0.00 0.00 5.36
2489 2521 2.167487 CCTCTCTCTCAGTTTACAGGGC 59.833 54.545 0.00 0.00 0.00 5.19
2490 2522 3.436243 ACCTCTCTCTCAGTTTACAGGG 58.564 50.000 0.00 0.00 0.00 4.45
2491 2523 5.258051 ACTACCTCTCTCTCAGTTTACAGG 58.742 45.833 0.00 0.00 0.00 4.00
2492 2524 7.107542 ACTACTACCTCTCTCTCAGTTTACAG 58.892 42.308 0.00 0.00 0.00 2.74
2493 2525 7.018487 ACTACTACCTCTCTCTCAGTTTACA 57.982 40.000 0.00 0.00 0.00 2.41
2494 2526 8.260114 AGTACTACTACCTCTCTCTCAGTTTAC 58.740 40.741 0.00 0.00 0.00 2.01
2495 2527 8.378115 AGTACTACTACCTCTCTCTCAGTTTA 57.622 38.462 0.00 0.00 0.00 2.01
2496 2528 7.181485 AGAGTACTACTACCTCTCTCTCAGTTT 59.819 40.741 0.00 0.00 30.98 2.66
2497 2529 6.670902 AGAGTACTACTACCTCTCTCTCAGTT 59.329 42.308 0.00 0.00 30.98 3.16
2498 2530 6.200114 AGAGTACTACTACCTCTCTCTCAGT 58.800 44.000 0.00 0.00 30.98 3.41
2499 2531 6.726490 AGAGTACTACTACCTCTCTCTCAG 57.274 45.833 0.00 0.00 30.98 3.35
2500 2532 7.840716 AGTAAGAGTACTACTACCTCTCTCTCA 59.159 40.741 0.00 0.00 38.87 3.27
2501 2533 8.242729 AGTAAGAGTACTACTACCTCTCTCTC 57.757 42.308 0.00 0.00 38.87 3.20
2502 2534 7.013655 CGAGTAAGAGTACTACTACCTCTCTCT 59.986 44.444 0.00 0.00 40.82 3.10
2503 2535 7.141363 CGAGTAAGAGTACTACTACCTCTCTC 58.859 46.154 0.00 0.15 40.82 3.20
2504 2536 6.040842 CCGAGTAAGAGTACTACTACCTCTCT 59.959 46.154 0.00 0.00 40.82 3.10
2505 2537 6.215845 CCGAGTAAGAGTACTACTACCTCTC 58.784 48.000 0.00 0.00 40.82 3.20
2506 2538 5.453198 GCCGAGTAAGAGTACTACTACCTCT 60.453 48.000 0.00 0.00 40.82 3.69
2507 2539 4.749598 GCCGAGTAAGAGTACTACTACCTC 59.250 50.000 0.00 3.88 40.82 3.85
2508 2540 4.408596 AGCCGAGTAAGAGTACTACTACCT 59.591 45.833 0.00 0.00 40.82 3.08
2509 2541 4.702831 AGCCGAGTAAGAGTACTACTACC 58.297 47.826 0.00 0.00 40.82 3.18
2510 2542 6.983890 AGTTAGCCGAGTAAGAGTACTACTAC 59.016 42.308 0.00 0.31 40.82 2.73
2511 2543 7.118496 AGTTAGCCGAGTAAGAGTACTACTA 57.882 40.000 0.00 0.00 40.82 1.82
2512 2544 5.988287 AGTTAGCCGAGTAAGAGTACTACT 58.012 41.667 0.00 0.00 40.82 2.57
2513 2545 6.538381 AGAAGTTAGCCGAGTAAGAGTACTAC 59.462 42.308 0.00 0.00 40.82 2.73
2514 2546 6.648192 AGAAGTTAGCCGAGTAAGAGTACTA 58.352 40.000 0.00 0.00 40.82 1.82
2515 2547 5.499313 AGAAGTTAGCCGAGTAAGAGTACT 58.501 41.667 0.00 0.00 43.56 2.73
2516 2548 5.220835 GGAGAAGTTAGCCGAGTAAGAGTAC 60.221 48.000 0.00 0.00 0.00 2.73
2517 2549 4.880696 GGAGAAGTTAGCCGAGTAAGAGTA 59.119 45.833 0.00 0.00 0.00 2.59
2518 2550 3.695556 GGAGAAGTTAGCCGAGTAAGAGT 59.304 47.826 0.00 0.00 0.00 3.24
2519 2551 3.949113 AGGAGAAGTTAGCCGAGTAAGAG 59.051 47.826 0.00 0.00 0.00 2.85
2520 2552 3.965694 AGGAGAAGTTAGCCGAGTAAGA 58.034 45.455 0.00 0.00 0.00 2.10
2521 2553 4.425520 CAAGGAGAAGTTAGCCGAGTAAG 58.574 47.826 0.00 0.00 0.00 2.34
2562 2594 8.047933 CGATAGTAACTTGGTCGTCTTAATTC 57.952 38.462 0.00 0.00 0.00 2.17
2617 2649 7.148171 GCAGTATTAATCTTCCAGCTTTTGACT 60.148 37.037 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.