Multiple sequence alignment - TraesCS7A01G435100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G435100 chr7A 100.000 2399 0 0 1 2399 628706848 628704450 0.000000e+00 4431
1 TraesCS7A01G435100 chr7D 88.394 1189 82 30 604 1768 546033179 546032023 0.000000e+00 1380
2 TraesCS7A01G435100 chr7D 85.516 504 53 13 1912 2399 546031966 546031467 2.130000e-140 508
3 TraesCS7A01G435100 chr7D 81.163 361 27 21 165 489 546033639 546033284 3.960000e-63 252
4 TraesCS7A01G435100 chr7D 83.955 268 27 9 961 1228 318251571 318251320 2.380000e-60 243
5 TraesCS7A01G435100 chr7D 76.553 499 55 34 780 1269 546039135 546038690 1.440000e-52 217
6 TraesCS7A01G435100 chr7B 89.972 1077 71 17 701 1768 590026483 590025435 0.000000e+00 1356
7 TraesCS7A01G435100 chr7B 83.029 383 46 17 2025 2396 590011158 590010784 1.780000e-86 329
8 TraesCS7A01G435100 chr7B 91.304 92 5 2 1767 1858 658638701 658638789 3.240000e-24 122
9 TraesCS7A01G435100 chrUn 91.304 92 5 2 1767 1858 377707852 377707940 3.240000e-24 122
10 TraesCS7A01G435100 chr6B 90.625 96 4 3 1760 1854 609385992 609386083 3.240000e-24 122
11 TraesCS7A01G435100 chr2A 91.304 92 4 4 1767 1858 350738133 350738220 3.240000e-24 122
12 TraesCS7A01G435100 chr1A 90.526 95 6 2 1765 1859 335022191 335022282 3.240000e-24 122
13 TraesCS7A01G435100 chr3B 89.583 96 6 3 1760 1854 10622505 10622597 4.190000e-23 119
14 TraesCS7A01G435100 chr1B 84.375 128 13 5 1766 1890 406341760 406341883 4.190000e-23 119
15 TraesCS7A01G435100 chr2B 88.776 98 7 4 1765 1862 132855536 132855629 1.510000e-22 117
16 TraesCS7A01G435100 chr6A 85.345 116 9 7 1761 1875 26813528 26813420 1.950000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G435100 chr7A 628704450 628706848 2398 True 4431.000000 4431 100.000000 1 2399 1 chr7A.!!$R1 2398
1 TraesCS7A01G435100 chr7D 546031467 546033639 2172 True 713.333333 1380 85.024333 165 2399 3 chr7D.!!$R3 2234
2 TraesCS7A01G435100 chr7B 590025435 590026483 1048 True 1356.000000 1356 89.972000 701 1768 1 chr7B.!!$R2 1067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 523 0.095935 GCACATGACAGCGATCACAC 59.904 55.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 2039 0.250901 CAGCAGGCCCACAACTAAGT 60.251 55.0 0.0 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.430473 TCATGTTTTCCAGCCCGTT 57.570 47.368 0.00 0.00 0.00 4.44
19 20 1.698506 TCATGTTTTCCAGCCCGTTT 58.301 45.000 0.00 0.00 0.00 3.60
20 21 2.865079 TCATGTTTTCCAGCCCGTTTA 58.135 42.857 0.00 0.00 0.00 2.01
21 22 2.554893 TCATGTTTTCCAGCCCGTTTAC 59.445 45.455 0.00 0.00 0.00 2.01
22 23 1.320507 TGTTTTCCAGCCCGTTTACC 58.679 50.000 0.00 0.00 0.00 2.85
23 24 1.320507 GTTTTCCAGCCCGTTTACCA 58.679 50.000 0.00 0.00 0.00 3.25
24 25 1.890489 GTTTTCCAGCCCGTTTACCAT 59.110 47.619 0.00 0.00 0.00 3.55
25 26 1.828979 TTTCCAGCCCGTTTACCATC 58.171 50.000 0.00 0.00 0.00 3.51
26 27 0.693622 TTCCAGCCCGTTTACCATCA 59.306 50.000 0.00 0.00 0.00 3.07
27 28 0.693622 TCCAGCCCGTTTACCATCAA 59.306 50.000 0.00 0.00 0.00 2.57
28 29 1.094785 CCAGCCCGTTTACCATCAAG 58.905 55.000 0.00 0.00 0.00 3.02
29 30 1.094785 CAGCCCGTTTACCATCAAGG 58.905 55.000 0.00 0.00 45.67 3.61
38 39 4.021559 CCATCAAGGTGCATGGCA 57.978 55.556 0.00 0.00 33.37 4.92
48 49 2.032170 TGCATGGCACACTTGACAC 58.968 52.632 0.00 0.00 46.40 3.67
49 50 0.466007 TGCATGGCACACTTGACACT 60.466 50.000 0.00 0.00 46.40 3.55
50 51 0.239347 GCATGGCACACTTGACACTC 59.761 55.000 0.00 0.00 46.40 3.51
51 52 0.877071 CATGGCACACTTGACACTCC 59.123 55.000 0.00 0.00 46.40 3.85
52 53 0.767375 ATGGCACACTTGACACTCCT 59.233 50.000 0.00 0.00 46.40 3.69
53 54 0.179048 TGGCACACTTGACACTCCTG 60.179 55.000 0.00 0.00 34.98 3.86
54 55 0.106708 GGCACACTTGACACTCCTGA 59.893 55.000 0.00 0.00 0.00 3.86
55 56 1.221414 GCACACTTGACACTCCTGAC 58.779 55.000 0.00 0.00 0.00 3.51
56 57 1.871080 CACACTTGACACTCCTGACC 58.129 55.000 0.00 0.00 0.00 4.02
57 58 1.138859 CACACTTGACACTCCTGACCA 59.861 52.381 0.00 0.00 0.00 4.02
58 59 2.050144 ACACTTGACACTCCTGACCAT 58.950 47.619 0.00 0.00 0.00 3.55
59 60 2.224378 ACACTTGACACTCCTGACCATG 60.224 50.000 0.00 0.00 0.00 3.66
60 61 2.037641 CACTTGACACTCCTGACCATGA 59.962 50.000 0.00 0.00 0.00 3.07
61 62 2.705658 ACTTGACACTCCTGACCATGAA 59.294 45.455 0.00 0.00 0.00 2.57
62 63 3.244353 ACTTGACACTCCTGACCATGAAG 60.244 47.826 0.00 0.00 0.00 3.02
63 64 1.625315 TGACACTCCTGACCATGAAGG 59.375 52.381 0.00 0.00 45.67 3.46
73 74 3.065575 CCATGAAGGTGCGGACTAC 57.934 57.895 7.11 0.00 0.00 2.73
74 75 0.537188 CCATGAAGGTGCGGACTACT 59.463 55.000 7.11 0.00 0.00 2.57
75 76 1.645034 CATGAAGGTGCGGACTACTG 58.355 55.000 7.11 0.00 0.00 2.74
95 96 2.869358 CAAGTCTGCAACTGTCATCG 57.131 50.000 2.88 0.00 38.58 3.84
96 97 2.138320 CAAGTCTGCAACTGTCATCGT 58.862 47.619 2.88 0.00 38.58 3.73
97 98 1.788258 AGTCTGCAACTGTCATCGTG 58.212 50.000 1.44 0.00 36.65 4.35
98 99 0.792640 GTCTGCAACTGTCATCGTGG 59.207 55.000 0.00 0.00 0.00 4.94
99 100 0.950555 TCTGCAACTGTCATCGTGGC 60.951 55.000 0.00 0.00 0.00 5.01
100 101 0.952497 CTGCAACTGTCATCGTGGCT 60.952 55.000 0.00 0.00 32.50 4.75
101 102 1.229975 TGCAACTGTCATCGTGGCTG 61.230 55.000 0.00 0.00 32.50 4.85
102 103 0.950555 GCAACTGTCATCGTGGCTGA 60.951 55.000 4.15 0.00 0.00 4.26
103 104 1.730501 CAACTGTCATCGTGGCTGAT 58.269 50.000 4.15 0.00 0.00 2.90
104 105 2.079158 CAACTGTCATCGTGGCTGATT 58.921 47.619 4.15 0.00 0.00 2.57
105 106 3.261580 CAACTGTCATCGTGGCTGATTA 58.738 45.455 4.15 0.00 0.00 1.75
106 107 3.610040 ACTGTCATCGTGGCTGATTAA 57.390 42.857 4.15 0.00 0.00 1.40
107 108 3.262420 ACTGTCATCGTGGCTGATTAAC 58.738 45.455 4.15 0.00 0.00 2.01
108 109 2.609459 CTGTCATCGTGGCTGATTAACC 59.391 50.000 0.00 0.00 0.00 2.85
109 110 2.027653 TGTCATCGTGGCTGATTAACCA 60.028 45.455 0.00 0.00 0.00 3.67
116 117 3.788227 TGGCTGATTAACCACAGTTCT 57.212 42.857 0.00 0.00 37.42 3.01
117 118 4.098914 TGGCTGATTAACCACAGTTCTT 57.901 40.909 0.00 0.00 37.42 2.52
118 119 4.072131 TGGCTGATTAACCACAGTTCTTC 58.928 43.478 0.00 0.00 37.42 2.87
119 120 4.202461 TGGCTGATTAACCACAGTTCTTCT 60.202 41.667 0.00 0.00 37.42 2.85
120 121 4.762251 GGCTGATTAACCACAGTTCTTCTT 59.238 41.667 0.00 0.00 37.42 2.52
121 122 5.106515 GGCTGATTAACCACAGTTCTTCTTC 60.107 44.000 0.00 0.00 37.42 2.87
122 123 5.703130 GCTGATTAACCACAGTTCTTCTTCT 59.297 40.000 0.00 0.00 37.42 2.85
123 124 6.205658 GCTGATTAACCACAGTTCTTCTTCTT 59.794 38.462 0.00 0.00 37.42 2.52
124 125 7.572168 GCTGATTAACCACAGTTCTTCTTCTTC 60.572 40.741 0.00 0.00 37.42 2.87
125 126 7.509546 TGATTAACCACAGTTCTTCTTCTTCT 58.490 34.615 0.00 0.00 37.42 2.85
126 127 7.993183 TGATTAACCACAGTTCTTCTTCTTCTT 59.007 33.333 0.00 0.00 37.42 2.52
127 128 7.787725 TTAACCACAGTTCTTCTTCTTCTTC 57.212 36.000 0.00 0.00 37.42 2.87
128 129 5.622346 ACCACAGTTCTTCTTCTTCTTCT 57.378 39.130 0.00 0.00 0.00 2.85
129 130 5.995446 ACCACAGTTCTTCTTCTTCTTCTT 58.005 37.500 0.00 0.00 0.00 2.52
130 131 6.052360 ACCACAGTTCTTCTTCTTCTTCTTC 58.948 40.000 0.00 0.00 0.00 2.87
131 132 6.126911 ACCACAGTTCTTCTTCTTCTTCTTCT 60.127 38.462 0.00 0.00 0.00 2.85
132 133 6.765512 CCACAGTTCTTCTTCTTCTTCTTCTT 59.234 38.462 0.00 0.00 0.00 2.52
133 134 7.042119 CCACAGTTCTTCTTCTTCTTCTTCTTC 60.042 40.741 0.00 0.00 0.00 2.87
134 135 7.710475 CACAGTTCTTCTTCTTCTTCTTCTTCT 59.290 37.037 0.00 0.00 0.00 2.85
135 136 8.264347 ACAGTTCTTCTTCTTCTTCTTCTTCTT 58.736 33.333 0.00 0.00 0.00 2.52
136 137 8.764287 CAGTTCTTCTTCTTCTTCTTCTTCTTC 58.236 37.037 0.00 0.00 0.00 2.87
137 138 8.704668 AGTTCTTCTTCTTCTTCTTCTTCTTCT 58.295 33.333 0.00 0.00 0.00 2.85
138 139 9.325198 GTTCTTCTTCTTCTTCTTCTTCTTCTT 57.675 33.333 0.00 0.00 0.00 2.52
139 140 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
140 141 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
141 142 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
142 143 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
143 144 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
144 145 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
145 146 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
146 147 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
147 148 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
148 149 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
149 150 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
150 151 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
151 152 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
152 153 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
153 154 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
154 155 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
155 156 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
156 157 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
157 158 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
158 159 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
159 160 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
160 161 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
161 162 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
162 163 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
163 164 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
164 165 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
165 166 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
166 167 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
167 168 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
168 169 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
170 171 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
173 174 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
179 180 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
186 187 8.749841 TTCTTCTTCTTCTTCTTCTTATCACG 57.250 34.615 0.00 0.00 0.00 4.35
188 189 5.411781 TCTTCTTCTTCTTCTTATCACGGC 58.588 41.667 0.00 0.00 0.00 5.68
189 190 3.770666 TCTTCTTCTTCTTATCACGGCG 58.229 45.455 4.80 4.80 0.00 6.46
193 194 0.459585 TCTTCTTATCACGGCGGCAC 60.460 55.000 13.24 0.00 0.00 5.01
203 204 0.816421 ACGGCGGCACTTAACAAAGT 60.816 50.000 13.24 0.00 0.00 2.66
247 250 0.813610 TGCGTGTGTGGAAGGTGAAG 60.814 55.000 0.00 0.00 0.00 3.02
249 252 1.507141 CGTGTGTGGAAGGTGAAGCC 61.507 60.000 0.00 0.00 37.58 4.35
253 256 1.675641 GTGGAAGGTGAAGCCGCAT 60.676 57.895 0.00 0.00 43.70 4.73
254 257 1.675310 TGGAAGGTGAAGCCGCATG 60.675 57.895 0.00 0.00 43.70 4.06
255 258 2.486966 GAAGGTGAAGCCGCATGC 59.513 61.111 7.91 7.91 43.70 4.06
256 259 2.282391 AAGGTGAAGCCGCATGCA 60.282 55.556 19.57 0.00 44.83 3.96
257 260 2.262471 GAAGGTGAAGCCGCATGCAG 62.262 60.000 19.57 7.69 44.83 4.41
258 261 2.747460 GGTGAAGCCGCATGCAGA 60.747 61.111 19.57 0.00 44.83 4.26
261 264 0.730494 GTGAAGCCGCATGCAGAAAC 60.730 55.000 19.57 6.38 44.83 2.78
274 277 5.062558 GCATGCAGAAACACATATTTTGACC 59.937 40.000 14.21 0.00 0.00 4.02
280 283 6.857964 CAGAAACACATATTTTGACCACACTC 59.142 38.462 0.00 0.00 0.00 3.51
293 308 2.885644 CACTCGATTCGGCCGGTG 60.886 66.667 27.83 19.97 0.00 4.94
298 313 2.791927 GATTCGGCCGGTGAAAGC 59.208 61.111 27.83 11.45 0.00 3.51
299 314 2.033448 ATTCGGCCGGTGAAAGCA 59.967 55.556 27.83 0.00 0.00 3.91
300 315 1.376609 GATTCGGCCGGTGAAAGCAT 61.377 55.000 27.83 4.56 0.00 3.79
301 316 1.376609 ATTCGGCCGGTGAAAGCATC 61.377 55.000 27.83 0.00 0.00 3.91
309 324 1.643832 GTGAAAGCATCGATCGGCC 59.356 57.895 16.41 3.89 0.00 6.13
310 325 1.089481 GTGAAAGCATCGATCGGCCA 61.089 55.000 16.41 2.69 0.00 5.36
323 356 3.628017 GATCGGCCATGTTTAATTTCCG 58.372 45.455 2.24 0.00 37.00 4.30
324 357 1.746220 TCGGCCATGTTTAATTTCCGG 59.254 47.619 2.24 0.00 36.40 5.14
327 360 1.801025 GCCATGTTTAATTTCCGGGCG 60.801 52.381 0.00 0.00 0.00 6.13
363 399 1.081892 AGACACACATGATTGCGAGC 58.918 50.000 0.00 0.00 0.00 5.03
400 436 1.812571 CTGCATGGAACCAACCACTAC 59.187 52.381 0.00 0.00 43.03 2.73
443 479 2.434336 GTCCAAGGCAGAAAAGGGTTTT 59.566 45.455 0.00 0.00 35.12 2.43
446 482 0.389025 AGGCAGAAAAGGGTTTTGCG 59.611 50.000 0.00 0.00 34.40 4.85
463 499 2.726691 CGGTACAGTCAAAGGCGCG 61.727 63.158 0.00 0.00 0.00 6.86
486 522 2.459245 GCACATGACAGCGATCACA 58.541 52.632 0.00 0.00 0.00 3.58
487 523 0.095935 GCACATGACAGCGATCACAC 59.904 55.000 0.00 0.00 0.00 3.82
488 524 1.431496 CACATGACAGCGATCACACA 58.569 50.000 0.00 0.00 0.00 3.72
489 525 1.127397 CACATGACAGCGATCACACAC 59.873 52.381 0.00 0.00 0.00 3.82
490 526 1.270252 ACATGACAGCGATCACACACA 60.270 47.619 0.00 0.00 0.00 3.72
491 527 1.127397 CATGACAGCGATCACACACAC 59.873 52.381 0.00 0.00 0.00 3.82
492 528 0.599991 TGACAGCGATCACACACACC 60.600 55.000 0.00 0.00 0.00 4.16
493 529 1.291877 GACAGCGATCACACACACCC 61.292 60.000 0.00 0.00 0.00 4.61
494 530 2.034879 CAGCGATCACACACACCCC 61.035 63.158 0.00 0.00 0.00 4.95
495 531 3.118454 GCGATCACACACACCCCG 61.118 66.667 0.00 0.00 0.00 5.73
496 532 2.434185 CGATCACACACACCCCGG 60.434 66.667 0.00 0.00 0.00 5.73
497 533 2.746277 GATCACACACACCCCGGC 60.746 66.667 0.00 0.00 0.00 6.13
498 534 4.344865 ATCACACACACCCCGGCC 62.345 66.667 0.00 0.00 0.00 6.13
504 540 3.953775 CACACCCCGGCCTGACTT 61.954 66.667 0.00 0.00 0.00 3.01
505 541 3.637273 ACACCCCGGCCTGACTTC 61.637 66.667 0.00 0.00 0.00 3.01
506 542 3.322466 CACCCCGGCCTGACTTCT 61.322 66.667 0.00 0.00 0.00 2.85
507 543 3.003763 ACCCCGGCCTGACTTCTC 61.004 66.667 0.00 0.00 0.00 2.87
508 544 3.787001 CCCCGGCCTGACTTCTCC 61.787 72.222 0.00 0.00 0.00 3.71
509 545 3.787001 CCCGGCCTGACTTCTCCC 61.787 72.222 0.00 0.00 0.00 4.30
510 546 4.148825 CCGGCCTGACTTCTCCCG 62.149 72.222 0.00 0.00 38.71 5.14
511 547 4.148825 CGGCCTGACTTCTCCCGG 62.149 72.222 0.00 0.00 35.54 5.73
512 548 3.003763 GGCCTGACTTCTCCCGGT 61.004 66.667 0.00 0.00 0.00 5.28
513 549 2.266055 GCCTGACTTCTCCCGGTG 59.734 66.667 0.00 0.00 0.00 4.94
514 550 2.982130 CCTGACTTCTCCCGGTGG 59.018 66.667 0.00 0.00 0.00 4.61
515 551 2.660064 CCTGACTTCTCCCGGTGGG 61.660 68.421 0.00 0.00 46.11 4.61
528 564 1.472662 CGGTGGGAGGCGGATTAGAT 61.473 60.000 0.00 0.00 0.00 1.98
531 567 2.289506 GGTGGGAGGCGGATTAGATAAC 60.290 54.545 0.00 0.00 0.00 1.89
548 585 5.615289 AGATAACTGGTTAGCACATGATCC 58.385 41.667 0.00 0.00 34.18 3.36
572 609 1.983119 GATCCCACCGGCTTGATCCA 61.983 60.000 0.00 0.00 0.00 3.41
573 610 1.355718 ATCCCACCGGCTTGATCCAT 61.356 55.000 0.00 0.00 0.00 3.41
574 611 1.526917 CCCACCGGCTTGATCCATC 60.527 63.158 0.00 0.00 0.00 3.51
575 612 1.526917 CCACCGGCTTGATCCATCC 60.527 63.158 0.00 0.00 0.00 3.51
576 613 1.224315 CACCGGCTTGATCCATCCA 59.776 57.895 0.00 0.00 0.00 3.41
597 634 9.276590 CATCCATTCATTAAGTAGATTAGCACA 57.723 33.333 0.00 0.00 0.00 4.57
601 638 5.925509 TCATTAAGTAGATTAGCACACCCC 58.074 41.667 0.00 0.00 0.00 4.95
602 639 5.665812 TCATTAAGTAGATTAGCACACCCCT 59.334 40.000 0.00 0.00 0.00 4.79
615 677 4.954933 CCCCTGTGTATCGGGTTG 57.045 61.111 0.00 0.00 40.86 3.77
623 685 1.331399 TGTATCGGGTTGGGATCGCA 61.331 55.000 8.63 8.63 0.00 5.10
633 695 2.103042 GGGATCGCACAGTGTCAGC 61.103 63.158 4.64 0.00 0.00 4.26
637 699 2.720358 ATCGCACAGTGTCAGCAGCA 62.720 55.000 1.61 0.00 0.00 4.41
642 704 3.550431 AGTGTCAGCAGCACCCGT 61.550 61.111 0.00 0.00 37.56 5.28
643 705 2.591715 GTGTCAGCAGCACCCGTT 60.592 61.111 0.00 0.00 0.00 4.44
658 720 2.271173 GTTCCGGGGGCCTGTTAG 59.729 66.667 0.84 0.00 0.00 2.34
663 725 2.992164 GGGGGCCTGTTAGCGTTA 59.008 61.111 0.84 0.00 0.00 3.18
689 751 6.816140 TGAATGAATGTTTACGCTGTCAGATA 59.184 34.615 3.32 0.00 0.00 1.98
748 821 1.409427 GCTAGTTGGTCTCGTAGCCAT 59.591 52.381 0.00 0.00 34.37 4.40
755 828 2.034179 TGGTCTCGTAGCCATTCGTATG 59.966 50.000 0.00 0.00 0.00 2.39
784 860 1.070134 TCACACTGAGTAACCTGCCAC 59.930 52.381 0.00 0.00 0.00 5.01
785 861 0.396811 ACACTGAGTAACCTGCCACC 59.603 55.000 0.00 0.00 0.00 4.61
850 926 0.757188 TCTCCTCGATCCTTGCTCCC 60.757 60.000 0.00 0.00 0.00 4.30
858 934 2.238144 CGATCCTTGCTCCCATCCATAT 59.762 50.000 0.00 0.00 0.00 1.78
861 937 3.330198 TCCTTGCTCCCATCCATATTCT 58.670 45.455 0.00 0.00 0.00 2.40
862 938 3.328931 TCCTTGCTCCCATCCATATTCTC 59.671 47.826 0.00 0.00 0.00 2.87
863 939 3.330110 CCTTGCTCCCATCCATATTCTCT 59.670 47.826 0.00 0.00 0.00 3.10
864 940 4.533707 CCTTGCTCCCATCCATATTCTCTA 59.466 45.833 0.00 0.00 0.00 2.43
890 966 0.836400 CCACACCTCACCCACTACCT 60.836 60.000 0.00 0.00 0.00 3.08
892 968 1.420138 CACACCTCACCCACTACCTTT 59.580 52.381 0.00 0.00 0.00 3.11
893 969 1.697982 ACACCTCACCCACTACCTTTC 59.302 52.381 0.00 0.00 0.00 2.62
894 970 1.003233 CACCTCACCCACTACCTTTCC 59.997 57.143 0.00 0.00 0.00 3.13
940 1026 2.941415 GCCCCAGAAGAACATACCACAG 60.941 54.545 0.00 0.00 0.00 3.66
959 1045 1.218585 CACCAGAGCAGAGCAGAGG 59.781 63.158 0.00 0.00 0.00 3.69
1014 1100 0.815734 AGGTTATGTCGTCCGGTGAG 59.184 55.000 0.00 0.00 0.00 3.51
1018 1104 0.107066 TATGTCGTCCGGTGAGGCTA 60.107 55.000 0.00 0.00 40.77 3.93
1031 1117 0.610687 GAGGCTACCACTTCTGCTGT 59.389 55.000 0.00 0.00 0.00 4.40
1041 1127 2.473664 CTTCTGCTGTTGCTGCTGCC 62.474 60.000 13.47 0.00 40.48 4.85
1045 1131 3.667282 CTGTTGCTGCTGCCGCTT 61.667 61.111 16.81 0.00 38.71 4.68
1057 1143 2.394563 GCCGCTTCTGTTCCTGAGC 61.395 63.158 0.00 0.00 0.00 4.26
1060 1146 0.037882 CGCTTCTGTTCCTGAGCTCA 60.038 55.000 17.19 17.19 0.00 4.26
1107 1193 2.577593 GACTGGACAGTACCGGCC 59.422 66.667 0.00 0.00 42.66 6.13
1235 1321 2.354773 GGAAGATACCGCGCTCCG 60.355 66.667 5.56 0.00 0.00 4.63
1236 1322 2.412112 GAAGATACCGCGCTCCGT 59.588 61.111 5.56 0.78 34.38 4.69
1344 1433 4.127171 TGTGGTCTGAGTAAGCTTGTTTC 58.873 43.478 9.86 4.54 0.00 2.78
1354 1443 6.428159 TGAGTAAGCTTGTTTCTCCTTGATTC 59.572 38.462 9.86 0.00 0.00 2.52
1432 1524 6.044871 ACAGGGATAGGAATTAAGAATGGAGG 59.955 42.308 0.00 0.00 0.00 4.30
1447 1539 1.144057 GAGGCACGTACATGGAGGG 59.856 63.158 2.09 0.00 0.00 4.30
1627 1720 6.540551 TGTTGTCACTTGTTTCATAGCTGTTA 59.459 34.615 0.00 0.00 0.00 2.41
1628 1721 6.539649 TGTCACTTGTTTCATAGCTGTTAC 57.460 37.500 0.00 0.00 0.00 2.50
1629 1722 5.176774 TGTCACTTGTTTCATAGCTGTTACG 59.823 40.000 0.00 0.00 0.00 3.18
1630 1723 5.176958 GTCACTTGTTTCATAGCTGTTACGT 59.823 40.000 0.00 0.00 0.00 3.57
1631 1724 5.756347 TCACTTGTTTCATAGCTGTTACGTT 59.244 36.000 0.00 0.00 0.00 3.99
1653 1747 4.917385 TCCTTTGTTGGATTTAGCAGCTA 58.083 39.130 0.00 0.00 0.00 3.32
1686 1780 3.649023 ACTTGGTCTGTTGGTGGTACATA 59.351 43.478 0.00 0.00 44.52 2.29
1715 1809 9.396022 ACAAACTAGTCTCTTCTTTTGATTTCA 57.604 29.630 0.00 0.00 0.00 2.69
1727 1822 7.810766 TCTTTTGATTTCAATAATTCCGCAC 57.189 32.000 0.00 0.00 35.55 5.34
1741 1836 3.490890 GCACTGCGGCCTCTTAAG 58.509 61.111 0.00 0.00 0.00 1.85
1752 1847 3.735514 CGGCCTCTTAAGAGCTAACTGAC 60.736 52.174 24.58 12.45 40.75 3.51
1768 1863 5.613358 AACTGACCTTCGCAAAAGAATAG 57.387 39.130 0.00 0.00 0.00 1.73
1769 1864 4.642429 ACTGACCTTCGCAAAAGAATAGT 58.358 39.130 0.00 0.00 0.00 2.12
1770 1865 4.691216 ACTGACCTTCGCAAAAGAATAGTC 59.309 41.667 0.00 0.00 35.56 2.59
1771 1866 4.000988 TGACCTTCGCAAAAGAATAGTCC 58.999 43.478 0.00 0.00 34.80 3.85
1772 1867 3.344515 ACCTTCGCAAAAGAATAGTCCC 58.655 45.455 0.00 0.00 0.00 4.46
1773 1868 3.009143 ACCTTCGCAAAAGAATAGTCCCT 59.991 43.478 0.00 0.00 0.00 4.20
1774 1869 3.623510 CCTTCGCAAAAGAATAGTCCCTC 59.376 47.826 0.00 0.00 0.00 4.30
1775 1870 4.508662 CTTCGCAAAAGAATAGTCCCTCT 58.491 43.478 0.00 0.00 0.00 3.69
1776 1871 3.861840 TCGCAAAAGAATAGTCCCTCTG 58.138 45.455 0.00 0.00 0.00 3.35
1777 1872 3.260884 TCGCAAAAGAATAGTCCCTCTGT 59.739 43.478 0.00 0.00 0.00 3.41
1778 1873 4.464951 TCGCAAAAGAATAGTCCCTCTGTA 59.535 41.667 0.00 0.00 0.00 2.74
1779 1874 5.046878 TCGCAAAAGAATAGTCCCTCTGTAA 60.047 40.000 0.00 0.00 0.00 2.41
1780 1875 5.642063 CGCAAAAGAATAGTCCCTCTGTAAA 59.358 40.000 0.00 0.00 0.00 2.01
1781 1876 6.183360 CGCAAAAGAATAGTCCCTCTGTAAAG 60.183 42.308 0.00 0.00 0.00 1.85
1782 1877 6.879458 GCAAAAGAATAGTCCCTCTGTAAAGA 59.121 38.462 0.00 0.00 0.00 2.52
1783 1878 7.390718 GCAAAAGAATAGTCCCTCTGTAAAGAA 59.609 37.037 0.00 0.00 0.00 2.52
1784 1879 9.284968 CAAAAGAATAGTCCCTCTGTAAAGAAA 57.715 33.333 0.00 0.00 0.00 2.52
1793 1888 9.495382 AGTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
1794 1889 9.535878 GTCCCTCTGTAAAGAAATATAAGAGTG 57.464 37.037 0.00 0.00 0.00 3.51
1795 1890 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
1796 1891 9.892130 CCCTCTGTAAAGAAATATAAGAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
1848 1943 8.608844 AATGCTCTTATATTTCTTTACGGAGG 57.391 34.615 0.00 0.00 0.00 4.30
1849 1944 6.522054 TGCTCTTATATTTCTTTACGGAGGG 58.478 40.000 0.00 0.00 0.00 4.30
1851 1946 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
1866 1961 4.663334 GGAGGGAGTAAGTTGGTTGAAAT 58.337 43.478 0.00 0.00 0.00 2.17
1868 1963 6.424032 GGAGGGAGTAAGTTGGTTGAAATAT 58.576 40.000 0.00 0.00 0.00 1.28
1870 1965 8.218488 GGAGGGAGTAAGTTGGTTGAAATATAT 58.782 37.037 0.00 0.00 0.00 0.86
1953 2061 1.578897 TAGTTGTGGGCCTGCTGATA 58.421 50.000 4.53 0.00 0.00 2.15
1954 2062 0.254178 AGTTGTGGGCCTGCTGATAG 59.746 55.000 4.53 0.00 0.00 2.08
1982 2090 6.910536 ATATCTAGGTTGAAACGAAAGCTG 57.089 37.500 0.00 0.00 36.15 4.24
1986 2094 2.362077 AGGTTGAAACGAAAGCTGCAAT 59.638 40.909 1.02 0.00 34.23 3.56
1987 2095 2.472488 GGTTGAAACGAAAGCTGCAATG 59.528 45.455 1.02 0.00 0.00 2.82
1988 2096 3.115554 GTTGAAACGAAAGCTGCAATGT 58.884 40.909 1.02 0.00 0.00 2.71
2004 2112 2.549754 CAATGTGCCTATTAAGCCCTCG 59.450 50.000 0.00 0.00 0.00 4.63
2018 2126 2.439701 CTCGTACGGGAGGGCTCA 60.440 66.667 10.34 0.00 0.00 4.26
2022 2131 2.041922 TACGGGAGGGCTCATGCT 60.042 61.111 0.00 0.00 39.59 3.79
2032 2141 2.101185 CTCATGCTCGACGCTCGT 59.899 61.111 8.07 0.00 41.35 4.18
2039 2148 1.991430 CTCGACGCTCGTGAAATGG 59.009 57.895 0.00 0.00 41.35 3.16
2048 2157 3.369546 CTCGTGAAATGGGCAACTTTT 57.630 42.857 0.00 0.00 0.00 2.27
2070 2179 1.539388 CTAAAGGTGGTGCGCAAATGA 59.461 47.619 14.00 0.00 0.00 2.57
2079 2188 3.369400 CGCAAATGAACCGGCCCA 61.369 61.111 0.00 0.00 0.00 5.36
2130 2239 4.718940 AATAAAATTGCTCCCAACCTCG 57.281 40.909 0.00 0.00 32.95 4.63
2132 2241 1.586154 AAATTGCTCCCAACCTCGCG 61.586 55.000 0.00 0.00 32.95 5.87
2161 2270 3.188786 CGACGCTAGCCAGCCAAC 61.189 66.667 9.66 0.00 45.64 3.77
2167 2276 1.338136 GCTAGCCAGCCAACCTAGGA 61.338 60.000 17.98 0.00 42.37 2.94
2186 2295 2.488153 GGAACTAAGCACGGCTGAAATT 59.512 45.455 0.00 0.00 39.62 1.82
2189 2298 3.146066 ACTAAGCACGGCTGAAATTCAA 58.854 40.909 0.00 0.00 39.62 2.69
2260 2371 7.333174 TCAACCTTTTCAACATTTCTTGGAAAC 59.667 33.333 0.00 0.00 27.73 2.78
2266 2377 6.462552 TCAACATTTCTTGGAAACATGTGA 57.537 33.333 0.00 0.00 42.32 3.58
2272 2383 7.769970 ACATTTCTTGGAAACATGTGAACAAAT 59.230 29.630 0.00 0.00 42.32 2.32
2276 2387 8.558973 TCTTGGAAACATGTGAACAAATTTTT 57.441 26.923 0.00 0.00 42.32 1.94
2302 2414 4.313277 TGCGAACAATGTTTGGAAATCA 57.687 36.364 14.57 1.64 34.12 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.352323 GGTAAACGGGCTGGAAAACATG 60.352 50.000 0.00 0.00 0.00 3.21
4 5 1.320507 TGGTAAACGGGCTGGAAAAC 58.679 50.000 0.00 0.00 0.00 2.43
6 7 1.074084 TGATGGTAAACGGGCTGGAAA 59.926 47.619 0.00 0.00 0.00 3.13
7 8 0.693622 TGATGGTAAACGGGCTGGAA 59.306 50.000 0.00 0.00 0.00 3.53
8 9 0.693622 TTGATGGTAAACGGGCTGGA 59.306 50.000 0.00 0.00 0.00 3.86
9 10 1.094785 CTTGATGGTAAACGGGCTGG 58.905 55.000 0.00 0.00 0.00 4.85
10 11 1.094785 CCTTGATGGTAAACGGGCTG 58.905 55.000 0.00 0.00 0.00 4.85
11 12 3.569873 CCTTGATGGTAAACGGGCT 57.430 52.632 0.00 0.00 0.00 5.19
21 22 4.021559 TGCCATGCACCTTGATGG 57.978 55.556 0.00 0.00 41.95 3.51
30 31 0.466007 AGTGTCAAGTGTGCCATGCA 60.466 50.000 0.00 0.00 35.60 3.96
31 32 0.239347 GAGTGTCAAGTGTGCCATGC 59.761 55.000 0.00 0.00 0.00 4.06
32 33 0.877071 GGAGTGTCAAGTGTGCCATG 59.123 55.000 0.00 0.00 0.00 3.66
33 34 0.767375 AGGAGTGTCAAGTGTGCCAT 59.233 50.000 0.00 0.00 0.00 4.40
34 35 0.179048 CAGGAGTGTCAAGTGTGCCA 60.179 55.000 0.00 0.00 0.00 4.92
35 36 0.106708 TCAGGAGTGTCAAGTGTGCC 59.893 55.000 0.00 0.00 0.00 5.01
36 37 1.221414 GTCAGGAGTGTCAAGTGTGC 58.779 55.000 0.00 0.00 0.00 4.57
37 38 1.138859 TGGTCAGGAGTGTCAAGTGTG 59.861 52.381 0.00 0.00 0.00 3.82
38 39 1.496060 TGGTCAGGAGTGTCAAGTGT 58.504 50.000 0.00 0.00 0.00 3.55
39 40 2.037641 TCATGGTCAGGAGTGTCAAGTG 59.962 50.000 0.00 0.00 0.00 3.16
40 41 2.329267 TCATGGTCAGGAGTGTCAAGT 58.671 47.619 0.00 0.00 0.00 3.16
41 42 3.332919 CTTCATGGTCAGGAGTGTCAAG 58.667 50.000 0.00 0.00 0.00 3.02
42 43 2.038952 CCTTCATGGTCAGGAGTGTCAA 59.961 50.000 0.00 0.00 30.81 3.18
43 44 1.625315 CCTTCATGGTCAGGAGTGTCA 59.375 52.381 0.00 0.00 30.81 3.58
44 45 2.393271 CCTTCATGGTCAGGAGTGTC 57.607 55.000 0.00 0.00 30.81 3.67
55 56 0.537188 AGTAGTCCGCACCTTCATGG 59.463 55.000 0.00 0.00 42.93 3.66
56 57 1.645034 CAGTAGTCCGCACCTTCATG 58.355 55.000 0.00 0.00 0.00 3.07
57 58 0.108138 GCAGTAGTCCGCACCTTCAT 60.108 55.000 0.00 0.00 0.00 2.57
58 59 1.292223 GCAGTAGTCCGCACCTTCA 59.708 57.895 0.00 0.00 0.00 3.02
59 60 0.320421 TTGCAGTAGTCCGCACCTTC 60.320 55.000 0.00 0.00 38.00 3.46
60 61 0.320771 CTTGCAGTAGTCCGCACCTT 60.321 55.000 0.00 0.00 38.00 3.50
61 62 1.293498 CTTGCAGTAGTCCGCACCT 59.707 57.895 0.00 0.00 38.00 4.00
62 63 1.004918 ACTTGCAGTAGTCCGCACC 60.005 57.895 0.00 0.00 38.00 5.01
63 64 0.038159 AGACTTGCAGTAGTCCGCAC 60.038 55.000 13.72 0.00 44.50 5.34
64 65 0.038251 CAGACTTGCAGTAGTCCGCA 60.038 55.000 13.72 0.00 44.50 5.69
65 66 2.743195 CAGACTTGCAGTAGTCCGC 58.257 57.895 13.72 0.00 44.50 5.54
76 77 2.096565 CACGATGACAGTTGCAGACTTG 60.097 50.000 0.00 0.00 36.10 3.16
77 78 2.138320 CACGATGACAGTTGCAGACTT 58.862 47.619 0.00 0.00 36.10 3.01
78 79 1.606480 CCACGATGACAGTTGCAGACT 60.606 52.381 0.00 0.00 39.89 3.24
79 80 0.792640 CCACGATGACAGTTGCAGAC 59.207 55.000 0.00 0.00 0.00 3.51
80 81 0.950555 GCCACGATGACAGTTGCAGA 60.951 55.000 0.00 0.00 31.53 4.26
81 82 0.952497 AGCCACGATGACAGTTGCAG 60.952 55.000 0.00 0.00 33.34 4.41
82 83 1.071299 AGCCACGATGACAGTTGCA 59.929 52.632 0.00 0.00 33.34 4.08
83 84 0.950555 TCAGCCACGATGACAGTTGC 60.951 55.000 0.00 0.00 0.00 4.17
84 85 1.730501 ATCAGCCACGATGACAGTTG 58.269 50.000 0.00 0.00 28.34 3.16
85 86 2.479566 AATCAGCCACGATGACAGTT 57.520 45.000 0.00 0.00 28.34 3.16
86 87 3.262420 GTTAATCAGCCACGATGACAGT 58.738 45.455 0.00 0.00 28.34 3.55
87 88 2.609459 GGTTAATCAGCCACGATGACAG 59.391 50.000 0.00 0.00 28.34 3.51
88 89 2.027653 TGGTTAATCAGCCACGATGACA 60.028 45.455 0.00 0.00 28.34 3.58
89 90 2.351726 GTGGTTAATCAGCCACGATGAC 59.648 50.000 0.00 0.00 44.80 3.06
90 91 2.627945 GTGGTTAATCAGCCACGATGA 58.372 47.619 0.00 0.00 44.80 2.92
96 97 3.788227 AGAACTGTGGTTAATCAGCCA 57.212 42.857 0.00 0.00 35.58 4.75
97 98 4.327680 AGAAGAACTGTGGTTAATCAGCC 58.672 43.478 0.00 0.00 35.58 4.85
98 99 5.703130 AGAAGAAGAACTGTGGTTAATCAGC 59.297 40.000 0.00 0.00 35.58 4.26
99 100 7.659390 AGAAGAAGAAGAACTGTGGTTAATCAG 59.341 37.037 0.00 0.00 35.58 2.90
100 101 7.509546 AGAAGAAGAAGAACTGTGGTTAATCA 58.490 34.615 0.00 0.00 35.58 2.57
101 102 7.971183 AGAAGAAGAAGAACTGTGGTTAATC 57.029 36.000 0.00 0.00 35.58 1.75
102 103 8.214364 AGAAGAAGAAGAAGAACTGTGGTTAAT 58.786 33.333 0.00 0.00 35.58 1.40
103 104 7.565680 AGAAGAAGAAGAAGAACTGTGGTTAA 58.434 34.615 0.00 0.00 35.58 2.01
104 105 7.125792 AGAAGAAGAAGAAGAACTGTGGTTA 57.874 36.000 0.00 0.00 35.58 2.85
105 106 5.995446 AGAAGAAGAAGAAGAACTGTGGTT 58.005 37.500 0.00 0.00 38.52 3.67
106 107 5.622346 AGAAGAAGAAGAAGAACTGTGGT 57.378 39.130 0.00 0.00 0.00 4.16
107 108 6.287525 AGAAGAAGAAGAAGAAGAACTGTGG 58.712 40.000 0.00 0.00 0.00 4.17
108 109 7.710475 AGAAGAAGAAGAAGAAGAAGAACTGTG 59.290 37.037 0.00 0.00 0.00 3.66
109 110 7.791029 AGAAGAAGAAGAAGAAGAAGAACTGT 58.209 34.615 0.00 0.00 0.00 3.55
110 111 8.661352 AAGAAGAAGAAGAAGAAGAAGAACTG 57.339 34.615 0.00 0.00 0.00 3.16
111 112 8.704668 AGAAGAAGAAGAAGAAGAAGAAGAACT 58.295 33.333 0.00 0.00 0.00 3.01
112 113 8.887036 AGAAGAAGAAGAAGAAGAAGAAGAAC 57.113 34.615 0.00 0.00 0.00 3.01
113 114 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
114 115 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
115 116 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
116 117 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
117 118 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
118 119 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
119 120 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
120 121 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
121 122 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
122 123 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
123 124 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
124 125 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
125 126 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
126 127 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
127 128 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
128 129 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
129 130 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
130 131 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
131 132 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
132 133 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
133 134 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
134 135 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
135 136 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
136 137 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
137 138 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
138 139 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
139 140 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
140 141 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
141 142 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
142 143 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
143 144 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
144 145 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
145 146 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
146 147 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
147 148 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
148 149 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
149 150 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
150 151 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
151 152 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
152 153 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
153 154 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
154 155 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
159 160 9.921637 GTGATAAGAAGAAGAAGAAGAAGAAGA 57.078 33.333 0.00 0.00 0.00 2.87
160 161 8.859156 CGTGATAAGAAGAAGAAGAAGAAGAAG 58.141 37.037 0.00 0.00 0.00 2.85
161 162 7.815068 CCGTGATAAGAAGAAGAAGAAGAAGAA 59.185 37.037 0.00 0.00 0.00 2.52
162 163 7.316640 CCGTGATAAGAAGAAGAAGAAGAAGA 58.683 38.462 0.00 0.00 0.00 2.87
163 164 6.035542 GCCGTGATAAGAAGAAGAAGAAGAAG 59.964 42.308 0.00 0.00 0.00 2.85
164 165 5.869888 GCCGTGATAAGAAGAAGAAGAAGAA 59.130 40.000 0.00 0.00 0.00 2.52
165 166 5.411781 GCCGTGATAAGAAGAAGAAGAAGA 58.588 41.667 0.00 0.00 0.00 2.87
166 167 4.266502 CGCCGTGATAAGAAGAAGAAGAAG 59.733 45.833 0.00 0.00 0.00 2.85
167 168 4.174009 CGCCGTGATAAGAAGAAGAAGAA 58.826 43.478 0.00 0.00 0.00 2.52
168 169 3.428999 CCGCCGTGATAAGAAGAAGAAGA 60.429 47.826 0.00 0.00 0.00 2.87
170 171 2.888594 CCGCCGTGATAAGAAGAAGAA 58.111 47.619 0.00 0.00 0.00 2.52
173 174 0.248012 TGCCGCCGTGATAAGAAGAA 59.752 50.000 0.00 0.00 0.00 2.52
179 180 1.337917 TGTTAAGTGCCGCCGTGATAA 60.338 47.619 0.00 0.00 0.00 1.75
183 184 0.385473 CTTTGTTAAGTGCCGCCGTG 60.385 55.000 0.00 0.00 0.00 4.94
193 194 7.805071 GTGATTGATGTTCTCCACTTTGTTAAG 59.195 37.037 0.00 0.00 37.40 1.85
203 204 4.305539 ACATGGTGATTGATGTTCTCCA 57.694 40.909 0.00 0.00 40.09 3.86
210 211 2.223409 CGCAGGAACATGGTGATTGATG 60.223 50.000 0.00 0.00 0.00 3.07
247 250 0.451383 TATGTGTTTCTGCATGCGGC 59.549 50.000 22.21 8.64 45.13 6.53
249 252 4.858140 TCAAAATATGTGTTTCTGCATGCG 59.142 37.500 14.09 8.20 0.00 4.73
253 256 5.068329 TGTGGTCAAAATATGTGTTTCTGCA 59.932 36.000 0.00 0.00 0.00 4.41
254 257 5.402270 GTGTGGTCAAAATATGTGTTTCTGC 59.598 40.000 0.00 0.00 0.00 4.26
255 258 6.738114 AGTGTGGTCAAAATATGTGTTTCTG 58.262 36.000 0.00 0.00 0.00 3.02
256 259 6.293407 CGAGTGTGGTCAAAATATGTGTTTCT 60.293 38.462 0.00 0.00 0.00 2.52
257 260 5.851177 CGAGTGTGGTCAAAATATGTGTTTC 59.149 40.000 0.00 0.00 0.00 2.78
258 261 5.529430 TCGAGTGTGGTCAAAATATGTGTTT 59.471 36.000 0.00 0.00 0.00 2.83
261 264 5.801350 ATCGAGTGTGGTCAAAATATGTG 57.199 39.130 0.00 0.00 0.00 3.21
274 277 2.885644 CCGGCCGAATCGAGTGTG 60.886 66.667 30.73 0.44 0.00 3.82
280 283 3.089784 CTTTCACCGGCCGAATCG 58.910 61.111 30.73 12.89 0.00 3.34
293 308 0.236711 CATGGCCGATCGATGCTTTC 59.763 55.000 18.66 0.53 0.00 2.62
298 313 4.488126 AATTAAACATGGCCGATCGATG 57.512 40.909 18.66 14.85 37.00 3.84
299 314 4.023193 GGAAATTAAACATGGCCGATCGAT 60.023 41.667 18.66 0.00 0.00 3.59
300 315 3.314080 GGAAATTAAACATGGCCGATCGA 59.686 43.478 18.66 0.00 0.00 3.59
301 316 3.628017 GGAAATTAAACATGGCCGATCG 58.372 45.455 8.51 8.51 0.00 3.69
302 317 3.550030 CCGGAAATTAAACATGGCCGATC 60.550 47.826 0.00 0.00 39.62 3.69
304 319 1.746220 CCGGAAATTAAACATGGCCGA 59.254 47.619 0.00 0.00 39.62 5.54
309 324 2.162608 TGACGCCCGGAAATTAAACATG 59.837 45.455 0.73 0.00 0.00 3.21
310 325 2.162809 GTGACGCCCGGAAATTAAACAT 59.837 45.455 0.73 0.00 0.00 2.71
327 360 2.047655 TTGCCGGGATCACGTGAC 60.048 61.111 22.71 14.46 0.00 3.67
383 419 1.804151 CGTGTAGTGGTTGGTTCCATG 59.196 52.381 0.00 0.00 39.81 3.66
385 421 0.533308 GCGTGTAGTGGTTGGTTCCA 60.533 55.000 0.00 0.00 34.85 3.53
417 453 2.586425 CTTTTCTGCCTTGGACCAAGA 58.414 47.619 31.94 14.65 43.42 3.02
443 479 1.666553 CGCCTTTGACTGTACCGCA 60.667 57.895 0.00 0.00 0.00 5.69
446 482 2.388232 CCGCGCCTTTGACTGTACC 61.388 63.158 0.00 0.00 0.00 3.34
463 499 4.450122 CGCTGTCATGTGCGTGCC 62.450 66.667 17.33 0.00 46.09 5.01
481 517 4.344865 GGCCGGGGTGTGTGTGAT 62.345 66.667 2.18 0.00 0.00 3.06
487 523 3.901797 GAAGTCAGGCCGGGGTGTG 62.902 68.421 2.18 0.00 0.00 3.82
488 524 3.637273 GAAGTCAGGCCGGGGTGT 61.637 66.667 2.18 0.00 0.00 4.16
489 525 3.316573 GAGAAGTCAGGCCGGGGTG 62.317 68.421 2.18 0.00 0.00 4.61
490 526 3.003763 GAGAAGTCAGGCCGGGGT 61.004 66.667 2.18 0.00 0.00 4.95
491 527 3.787001 GGAGAAGTCAGGCCGGGG 61.787 72.222 2.18 0.00 0.00 5.73
492 528 3.787001 GGGAGAAGTCAGGCCGGG 61.787 72.222 2.18 0.00 0.00 5.73
493 529 4.148825 CGGGAGAAGTCAGGCCGG 62.149 72.222 0.00 0.00 0.00 6.13
494 530 4.148825 CCGGGAGAAGTCAGGCCG 62.149 72.222 0.00 0.00 0.00 6.13
495 531 3.003763 ACCGGGAGAAGTCAGGCC 61.004 66.667 6.32 0.00 0.00 5.19
496 532 2.266055 CACCGGGAGAAGTCAGGC 59.734 66.667 6.32 0.00 0.00 4.85
497 533 2.982130 CCACCGGGAGAAGTCAGG 59.018 66.667 6.32 0.00 35.59 3.86
508 544 3.158648 TAATCCGCCTCCCACCGG 61.159 66.667 0.00 0.00 45.64 5.28
509 545 1.472662 ATCTAATCCGCCTCCCACCG 61.473 60.000 0.00 0.00 0.00 4.94
510 546 1.640917 TATCTAATCCGCCTCCCACC 58.359 55.000 0.00 0.00 0.00 4.61
511 547 2.633481 AGTTATCTAATCCGCCTCCCAC 59.367 50.000 0.00 0.00 0.00 4.61
512 548 2.632996 CAGTTATCTAATCCGCCTCCCA 59.367 50.000 0.00 0.00 0.00 4.37
513 549 2.028020 CCAGTTATCTAATCCGCCTCCC 60.028 54.545 0.00 0.00 0.00 4.30
514 550 2.633481 ACCAGTTATCTAATCCGCCTCC 59.367 50.000 0.00 0.00 0.00 4.30
515 551 4.338379 AACCAGTTATCTAATCCGCCTC 57.662 45.455 0.00 0.00 0.00 4.70
516 552 4.262506 GCTAACCAGTTATCTAATCCGCCT 60.263 45.833 0.00 0.00 0.00 5.52
517 553 3.995048 GCTAACCAGTTATCTAATCCGCC 59.005 47.826 0.00 0.00 0.00 6.13
520 556 7.217200 TCATGTGCTAACCAGTTATCTAATCC 58.783 38.462 0.00 0.00 0.00 3.01
528 564 4.769688 CTGGATCATGTGCTAACCAGTTA 58.230 43.478 0.00 0.00 39.68 2.24
531 567 1.945394 GCTGGATCATGTGCTAACCAG 59.055 52.381 0.00 0.00 45.01 4.00
572 609 9.277783 GTGTGCTAATCTACTTAATGAATGGAT 57.722 33.333 0.00 0.00 0.00 3.41
573 610 7.715249 GGTGTGCTAATCTACTTAATGAATGGA 59.285 37.037 0.00 0.00 0.00 3.41
574 611 7.041098 GGGTGTGCTAATCTACTTAATGAATGG 60.041 40.741 0.00 0.00 0.00 3.16
575 612 7.041098 GGGGTGTGCTAATCTACTTAATGAATG 60.041 40.741 0.00 0.00 0.00 2.67
576 613 6.998673 GGGGTGTGCTAATCTACTTAATGAAT 59.001 38.462 0.00 0.00 0.00 2.57
601 638 1.538204 CGATCCCAACCCGATACACAG 60.538 57.143 0.00 0.00 0.00 3.66
602 639 0.462375 CGATCCCAACCCGATACACA 59.538 55.000 0.00 0.00 0.00 3.72
615 677 2.103042 GCTGACACTGTGCGATCCC 61.103 63.158 7.90 0.00 0.00 3.85
623 685 2.111878 GGGTGCTGCTGACACTGT 59.888 61.111 14.32 0.00 38.14 3.55
642 704 3.723922 GCTAACAGGCCCCCGGAA 61.724 66.667 0.73 0.00 0.00 4.30
650 712 4.875544 TTCATTCATAACGCTAACAGGC 57.124 40.909 0.00 0.00 0.00 4.85
658 720 5.525536 GCGTAAACATTCATTCATAACGC 57.474 39.130 0.00 0.00 44.94 4.84
663 725 5.643348 TCTGACAGCGTAAACATTCATTCAT 59.357 36.000 0.00 0.00 0.00 2.57
689 751 2.158652 TCGGATCCTCGGTTCAGATAGT 60.159 50.000 10.75 0.00 0.00 2.12
703 766 4.222847 GGTCTGCGGGTCGGATCC 62.223 72.222 0.00 0.00 31.70 3.36
704 767 4.570663 CGGTCTGCGGGTCGGATC 62.571 72.222 0.00 0.00 31.70 3.36
748 821 3.113322 GTGTGATCGCTTAGCATACGAA 58.887 45.455 7.94 0.00 39.56 3.85
755 828 2.285827 ACTCAGTGTGATCGCTTAGC 57.714 50.000 7.94 0.00 31.04 3.09
784 860 0.882474 TGCGTGGGTTTTATTTCCGG 59.118 50.000 0.00 0.00 0.00 5.14
785 861 2.708386 TTGCGTGGGTTTTATTTCCG 57.292 45.000 0.00 0.00 0.00 4.30
850 926 3.054802 GGCAGGGGTAGAGAATATGGATG 60.055 52.174 0.00 0.00 0.00 3.51
858 934 1.198759 GGTGTGGCAGGGGTAGAGAA 61.199 60.000 0.00 0.00 0.00 2.87
861 937 1.612442 GAGGTGTGGCAGGGGTAGA 60.612 63.158 0.00 0.00 0.00 2.59
862 938 1.918293 TGAGGTGTGGCAGGGGTAG 60.918 63.158 0.00 0.00 0.00 3.18
863 939 2.205749 TGAGGTGTGGCAGGGGTA 59.794 61.111 0.00 0.00 0.00 3.69
864 940 3.570212 GTGAGGTGTGGCAGGGGT 61.570 66.667 0.00 0.00 0.00 4.95
890 966 2.335933 ACGAGGAAGGAAGGAAGGAAA 58.664 47.619 0.00 0.00 0.00 3.13
892 968 1.623811 CAACGAGGAAGGAAGGAAGGA 59.376 52.381 0.00 0.00 0.00 3.36
893 969 1.946283 GCAACGAGGAAGGAAGGAAGG 60.946 57.143 0.00 0.00 0.00 3.46
894 970 1.270839 TGCAACGAGGAAGGAAGGAAG 60.271 52.381 0.00 0.00 0.00 3.46
940 1026 1.448189 CTCTGCTCTGCTCTGGTGC 60.448 63.158 0.00 0.00 0.00 5.01
959 1045 1.632965 ATCTTACTTGGGGGTCGGGC 61.633 60.000 0.00 0.00 0.00 6.13
1014 1100 1.160137 CAACAGCAGAAGTGGTAGCC 58.840 55.000 0.00 0.00 31.49 3.93
1018 1104 1.450531 GCAGCAACAGCAGAAGTGGT 61.451 55.000 0.00 0.00 33.53 4.16
1041 1127 0.037882 TGAGCTCAGGAACAGAAGCG 60.038 55.000 13.74 0.00 0.00 4.68
1045 1131 1.474478 GACGATGAGCTCAGGAACAGA 59.526 52.381 22.96 0.00 0.00 3.41
1057 1143 2.507102 AGCGCCAACGACGATGAG 60.507 61.111 2.29 1.80 43.93 2.90
1080 1166 4.773117 GTCCAGTCCCGTCGACGC 62.773 72.222 31.73 18.46 46.92 5.19
1089 1175 2.577593 GCCGGTACTGTCCAGTCC 59.422 66.667 1.90 4.81 42.54 3.85
1092 1178 4.143333 CCGGCCGGTACTGTCCAG 62.143 72.222 36.64 6.12 0.00 3.86
1228 1314 2.586357 GGATTCCAGACGGAGCGC 60.586 66.667 0.00 0.00 44.10 5.92
1229 1315 2.107141 GGGATTCCAGACGGAGCG 59.893 66.667 4.80 0.00 44.10 5.03
1235 1321 2.290896 TGTTGTGGATGGGATTCCAGAC 60.291 50.000 0.00 0.00 46.31 3.51
1236 1322 1.991813 TGTTGTGGATGGGATTCCAGA 59.008 47.619 0.00 0.00 46.31 3.86
1344 1433 1.757118 TCTACGCCTGGAATCAAGGAG 59.243 52.381 8.12 6.90 0.00 3.69
1354 1443 0.463295 TCTAGTCCGTCTACGCCTGG 60.463 60.000 0.00 0.00 38.18 4.45
1381 1470 1.412079 CCTCACTGCCTAGATGCTCT 58.588 55.000 0.00 0.00 0.00 4.09
1391 1483 2.980233 GTGTGTGCCCTCACTGCC 60.980 66.667 0.00 0.00 43.49 4.85
1432 1524 1.518572 CGACCCTCCATGTACGTGC 60.519 63.158 9.72 0.00 0.00 5.34
1447 1539 1.532007 ACGATCGATCCTAAGCTCGAC 59.468 52.381 24.34 0.00 45.63 4.20
1560 1653 0.671251 CTCCCATCTGACCGACTAGC 59.329 60.000 0.00 0.00 0.00 3.42
1561 1654 2.060050 ACTCCCATCTGACCGACTAG 57.940 55.000 0.00 0.00 0.00 2.57
1562 1655 3.285484 GTTACTCCCATCTGACCGACTA 58.715 50.000 0.00 0.00 0.00 2.59
1563 1656 2.100989 GTTACTCCCATCTGACCGACT 58.899 52.381 0.00 0.00 0.00 4.18
1564 1657 1.822990 TGTTACTCCCATCTGACCGAC 59.177 52.381 0.00 0.00 0.00 4.79
1565 1658 2.100197 CTGTTACTCCCATCTGACCGA 58.900 52.381 0.00 0.00 0.00 4.69
1566 1659 1.471676 GCTGTTACTCCCATCTGACCG 60.472 57.143 0.00 0.00 0.00 4.79
1567 1660 1.834263 AGCTGTTACTCCCATCTGACC 59.166 52.381 0.00 0.00 0.00 4.02
1627 1720 3.886505 TGCTAAATCCAACAAAGGAACGT 59.113 39.130 0.00 0.00 41.92 3.99
1628 1721 4.475944 CTGCTAAATCCAACAAAGGAACG 58.524 43.478 0.00 0.00 41.92 3.95
1629 1722 4.021981 AGCTGCTAAATCCAACAAAGGAAC 60.022 41.667 0.00 0.00 41.92 3.62
1630 1723 4.151883 AGCTGCTAAATCCAACAAAGGAA 58.848 39.130 0.00 0.00 41.92 3.36
1631 1724 3.766545 AGCTGCTAAATCCAACAAAGGA 58.233 40.909 0.00 0.00 43.01 3.36
1653 1747 7.606456 CACCAACAGACCAAGTTATATTACAGT 59.394 37.037 0.00 0.00 0.00 3.55
1686 1780 9.620259 AATCAAAAGAAGAGACTAGTTTGTTCT 57.380 29.630 17.22 17.22 30.34 3.01
1727 1822 0.747255 TAGCTCTTAAGAGGCCGCAG 59.253 55.000 29.22 7.80 42.29 5.18
1741 1836 2.080286 TTGCGAAGGTCAGTTAGCTC 57.920 50.000 0.00 0.00 33.87 4.09
1752 1847 3.610911 AGGGACTATTCTTTTGCGAAGG 58.389 45.455 0.00 0.00 36.02 3.46
1768 1863 9.535878 CACTCTTATATTTCTTTACAGAGGGAC 57.464 37.037 0.00 0.00 32.92 4.46
1769 1864 9.268282 ACACTCTTATATTTCTTTACAGAGGGA 57.732 33.333 2.59 0.00 34.50 4.20
1770 1865 9.892130 AACACTCTTATATTTCTTTACAGAGGG 57.108 33.333 0.00 0.00 36.55 4.30
1822 1917 9.057089 CCTCCGTAAAGAAATATAAGAGCATTT 57.943 33.333 0.00 0.00 0.00 2.32
1823 1918 7.661847 CCCTCCGTAAAGAAATATAAGAGCATT 59.338 37.037 0.00 0.00 0.00 3.56
1824 1919 7.016268 TCCCTCCGTAAAGAAATATAAGAGCAT 59.984 37.037 0.00 0.00 0.00 3.79
1825 1920 6.325545 TCCCTCCGTAAAGAAATATAAGAGCA 59.674 38.462 0.00 0.00 0.00 4.26
1826 1921 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
1827 1922 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
1828 1923 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
1829 1924 9.694137 CTTACTCCCTCCGTAAAGAAATATAAG 57.306 37.037 0.00 0.00 0.00 1.73
1830 1925 9.205513 ACTTACTCCCTCCGTAAAGAAATATAA 57.794 33.333 0.00 0.00 0.00 0.98
1831 1926 8.773033 ACTTACTCCCTCCGTAAAGAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
1832 1927 7.672122 ACTTACTCCCTCCGTAAAGAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
1833 1928 7.325694 CAACTTACTCCCTCCGTAAAGAAATA 58.674 38.462 0.00 0.00 0.00 1.40
1834 1929 6.171213 CAACTTACTCCCTCCGTAAAGAAAT 58.829 40.000 0.00 0.00 0.00 2.17
1835 1930 5.511888 CCAACTTACTCCCTCCGTAAAGAAA 60.512 44.000 0.00 0.00 0.00 2.52
1836 1931 4.020839 CCAACTTACTCCCTCCGTAAAGAA 60.021 45.833 0.00 0.00 0.00 2.52
1837 1932 3.512724 CCAACTTACTCCCTCCGTAAAGA 59.487 47.826 0.00 0.00 0.00 2.52
1838 1933 3.260128 ACCAACTTACTCCCTCCGTAAAG 59.740 47.826 0.00 0.00 0.00 1.85
1839 1934 3.242011 ACCAACTTACTCCCTCCGTAAA 58.758 45.455 0.00 0.00 0.00 2.01
1840 1935 2.893424 ACCAACTTACTCCCTCCGTAA 58.107 47.619 0.00 0.00 0.00 3.18
1841 1936 2.564062 CAACCAACTTACTCCCTCCGTA 59.436 50.000 0.00 0.00 0.00 4.02
1842 1937 1.346722 CAACCAACTTACTCCCTCCGT 59.653 52.381 0.00 0.00 0.00 4.69
1843 1938 1.621814 TCAACCAACTTACTCCCTCCG 59.378 52.381 0.00 0.00 0.00 4.63
1844 1939 3.782656 TTCAACCAACTTACTCCCTCC 57.217 47.619 0.00 0.00 0.00 4.30
1918 2013 7.683463 GCCCACAACTAAGTTTTCTTTATGTGT 60.683 37.037 0.00 0.00 40.58 3.72
1921 2016 6.015434 AGGCCCACAACTAAGTTTTCTTTATG 60.015 38.462 0.00 0.00 40.91 1.90
1931 2039 0.250901 CAGCAGGCCCACAACTAAGT 60.251 55.000 0.00 0.00 0.00 2.24
1933 2041 0.698238 ATCAGCAGGCCCACAACTAA 59.302 50.000 0.00 0.00 0.00 2.24
1953 2061 7.681939 TTCGTTTCAACCTAGATATTTTGCT 57.318 32.000 0.00 0.00 0.00 3.91
1954 2062 7.008357 GCTTTCGTTTCAACCTAGATATTTTGC 59.992 37.037 0.00 0.00 0.00 3.68
1968 2076 3.114809 CACATTGCAGCTTTCGTTTCAA 58.885 40.909 0.00 0.00 0.00 2.69
1969 2077 2.730069 CACATTGCAGCTTTCGTTTCA 58.270 42.857 0.00 0.00 0.00 2.69
2004 2112 2.109181 GCATGAGCCCTCCCGTAC 59.891 66.667 0.00 0.00 33.58 3.67
2022 2131 1.445410 CCCATTTCACGAGCGTCGA 60.445 57.895 13.06 0.00 43.74 4.20
2043 2152 1.336755 CGCACCACCTTTAGCAAAAGT 59.663 47.619 0.00 0.00 40.51 2.66
2048 2157 1.103987 TTTGCGCACCACCTTTAGCA 61.104 50.000 11.12 0.00 0.00 3.49
2070 2179 3.061848 CTGCGAATTGGGCCGGTT 61.062 61.111 1.90 0.00 0.00 4.44
2114 2223 2.040544 CGCGAGGTTGGGAGCAATT 61.041 57.895 0.00 0.00 0.00 2.32
2154 2263 2.027192 TGCTTAGTTCCTAGGTTGGCTG 60.027 50.000 9.08 0.00 0.00 4.85
2159 2268 1.066358 GCCGTGCTTAGTTCCTAGGTT 60.066 52.381 9.08 0.00 0.00 3.50
2161 2270 0.824759 AGCCGTGCTTAGTTCCTAGG 59.175 55.000 0.82 0.82 33.89 3.02
2167 2276 3.146066 TGAATTTCAGCCGTGCTTAGTT 58.854 40.909 0.00 0.00 36.40 2.24
2186 2295 6.425721 AGTTGTTACTTTAAGCATAGCGTTGA 59.574 34.615 0.00 0.00 0.00 3.18
2189 2298 7.894376 TTAGTTGTTACTTTAAGCATAGCGT 57.106 32.000 0.00 0.00 35.78 5.07
2239 2350 8.117988 CACATGTTTCCAAGAAATGTTGAAAAG 58.882 33.333 0.00 0.00 29.20 2.27
2276 2387 7.439356 TGATTTCCAAACATTGTTCGCATTAAA 59.561 29.630 1.83 0.00 0.00 1.52
2281 2392 4.313277 TGATTTCCAAACATTGTTCGCA 57.687 36.364 1.83 0.00 0.00 5.10
2282 2393 6.942886 TTATGATTTCCAAACATTGTTCGC 57.057 33.333 1.83 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.